28	LOC_Os05g46680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26955909	26956522	-	CDS,downstream
28	LOC_Os06g47810	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr6	28934218	28938459	-	CDS,promoter,downstream
28	LOC_Os10g09810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5319310	5325707	+	CDS,promoter,downstream
28	LOC_Os12g17280	hypothetical protein	gene	hypothetical protein	chr12	9883807	9884187	-	CDS,promoter,downstream
28	LOC_Os02g27420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	16150406	16154260	+	CDS,downstream
28	LOC_Os03g45690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25788946	25789776	+	CDS,promoter,downstream
28	LOC_Os10g36150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19249816	19253249	-	CDS
28	LOC_Os01g39660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	22370481	22372661	-	CDS,downstream
28	LOC_Os11g31680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18059892	18075080	-	CDS,promoter
28	LOC_Os08g31100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19208226	19208671	-	CDS,downstream
28	LOC_Os08g33950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21253641	21259615	-	CDS,promoter,downstream
28	LOC_Os02g29850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	17739944	17744101	+	CDS,promoter,downstream
28	LOC_Os11g37160	hypothetical protein	gene	hypothetical protein	chr11	21469799	21470917	-	CDS,promoter,downstream
28	LOC_Os09g14300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8451141	8451900	-	CDS,promoter,downstream
28	LOC_Os10g28930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15002996	15007408	+	CDS,promoter,downstream
28	LOC_Os05g45970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	26578481	26585421	-	CDS,downstream
28	LOC_Os11g14640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8247104	8248449	+	CDS,promoter,downstream
28	LOC_Os07g01390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	241350	247622	+	CDS,downstream
28	LOC_Os09g01410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	319110	321712	+	CDS,promoter
28	LOC_Os05g23910	histone-like transcription factor and archaeal histone, putative, expressed	gene	histone-like transcription factor and archaeal histone, putative, expressed	chr5	13692445	13694004	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os07g20390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11769717	11771011	-	CDS,promoter,downstream
28	LOC_Os04g38090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22487374	22491166	-	CDS,downstream
28	LOC_Os12g24730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14184274	14185744	-	CDS,promoter,downstream
28	LOC_Os06g24110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14106232	14111228	-	CDS,downstream
28	LOC_Os06g10090	hypothetical protein	gene	hypothetical protein	chr6	5136169	5137893	-	CDS
28	LOC_Os11g14330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8034645	8041864	-	CDS
28	LOC_Os02g27280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16060713	16064325	-	CDS,promoter,downstream
28	LOC_Os03g34000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19394540	19395172	-	CDS,downstream
28	LOC_Os04g12210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6717505	6729255	+	CDS,downstream
28	LOC_Os03g62710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35481173	35482825	+	CDS,promoter,downstream
28	LOC_Os09g11950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6726667	6729490	-	CDS,promoter
28	LOC_Os11g44240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	26258448	26268165	+	CDS
28	LOC_Os08g29560	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	18119476	18124874	+	CDS
28	LOC_Os03g45820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25871082	25874424	-	CDS,promoter
28	LOC_Os06g13740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	7615604	7618653	+	CDS,promoter,downstream
28	LOC_Os06g07440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	3576351	3578642	-	CDS
28	LOC_Os07g23700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13375043	13378796	-	CDS,promoter,downstream
28	LOC_Os06g29480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16901951	16902985	+	CDS,promoter,downstream
28	LOC_Os09g13140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7570498	7573210	-	CDS,promoter,downstream
28	LOC_Os02g20470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12070695	12076466	+	CDS,promoter,downstream
28	LOC_Os06g10830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	5647265	5649907	+	CDS,promoter,downstream
28	LOC_Os12g39590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	24391557	24397478	-	CDS,downstream
28	LOC_Os07g29080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17040619	17043253	-	CDS,downstream
28	LOC_Os04g49090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	29075136	29078423	-	CDS,promoter
28	LOC_Os06g28150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	15990591	15995008	+	CDS,downstream
28	LOC_Os01g24040	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13542413	13547753	+	CDS
28	LOC_Os11g35800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	20545020	20549387	+	CDS
28	LOC_Os08g33040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20509251	20517247	+	CDS,promoter,downstream
28	LOC_Os06g06200	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	2869178	2871701	-	CDS,downstream
28	LOC_Os08g22890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13770340	13771651	+	CDS,downstream
28	LOC_Os10g09050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4914689	4916712	-	CDS,promoter,downstream
28	LOC_Os01g53870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	30966603	30968936	+	CDS
28	LOC_Os12g18500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10692896	10694936	+	CDS,promoter,downstream
28	LOC_Os03g47130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	26661855	26667731	-	CDS,downstream
28	LOC_Os09g09700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5245793	5250014	+	CDS,promoter,downstream
28	LOC_Os04g29520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17366616	17369663	+	CDS
28	LOC_Os11g42640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25208459	25211594	-	CDS,promoter,downstream
28	LOC_Os09g07950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4080684	4083576	+	CDS,promoter,downstream
28	LOC_Os10g17640	hypothetical protein	gene	hypothetical protein	chr10	8845907	8846195	-	CDS,downstream
28	LOC_Os12g14280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8131146	8133967	+	CDS,promoter,downstream
28	LOC_Os02g38660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23359589	23365378	+	CDS,promoter
28	LOC_Os11g11180	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	6185942	6187435	-	CDS,promoter,downstream
28	LOC_Os11g12870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	7295387	7302113	-	CDS,promoter,downstream
28	LOC_Os12g16800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9629206	9633630	-	CDS,promoter,downstream
28	LOC_Os10g12226	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6821972	6824461	-	CDS,promoter
28	LOC_Os11g43380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25716258	25719198	-	CDS,promoter,downstream
28	LOC_Os08g19060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11377794	11380703	-	CDS,downstream
28	LOC_Os04g07980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4240461	4244154	-	CDS,promoter,downstream
28	LOC_Os02g20420	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	12039379	12052089	-	CDS,promoter
28	LOC_Os09g03170	hypothetical protein	gene	hypothetical protein	chr9	1519973	1521792	+	CDS,downstream
28	LOC_Os07g03520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	1403145	1406104	+	CDS
28	LOC_Os12g16140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9214216	9217417	+	CDS,promoter,downstream
28	LOC_Os12g13870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7854991	7856149	+	CDS,promoter,downstream
28	LOC_Os07g30580	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr7	18091515	18097625	-	CDS,promoter
28	LOC_Os11g28290	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr11	15807876	15809041	+	CDS
28	LOC_Os06g23130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13487228	13489948	+	CDS,promoter
28	LOC_Os11g09550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5107330	5109251	+	CDS,promoter
28	LOC_Os12g10060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5327482	5329764	+	CDS,promoter,downstream
28	LOC_Os12g23430	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr12	13243449	13245516	+	CDS,promoter,downstream
28	LOC_Os07g41380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24794143	24798556	-	CDS
28	LOC_Os11g08729	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4644252	4645409	+	CDS,downstream
28	LOC_Os09g24430	hypothetical protein	gene	hypothetical protein	chr9	14527585	14528404	+	CDS,downstream
28	LOC_Os12g23060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13032470	13036126	-	CDS,promoter,downstream
28	LOC_Os04g13870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7730615	7733431	+	CDS,promoter,downstream
28	LOC_Os03g46900	hypothetical protein	gene	hypothetical protein	chr3	26516418	26518643	-	CDS
28	LOC_Os07g24270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13795024	13795248	+	CDS,promoter,downstream
28	LOC_Os02g06230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3114376	3118797	-	CDS
28	LOC_Os12g28290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16722259	16727170	-	CDS,promoter
28	LOC_Os12g12150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	6660198	6663421	+	CDS,downstream
28	LOC_Os10g34290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	18219193	18222733	+	CDS
28	LOC_Os05g09470	hypothetical protein	gene	hypothetical protein	chr5	5319243	5321906	-	CDS,promoter
28	LOC_Os06g28780	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	16389087	16391530	-	CDS,promoter
28	LOC_Os07g30270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17891266	17897222	-	CDS
28	LOC_Os03g36130	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	20041297	20046102	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os09g07860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3996128	3998649	-	CDS,promoter
28	LOC_Os01g58710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33936707	33941955	+	CDS,promoter,downstream
28	LOC_Os07g09210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	4829351	4830109	+	CDS,promoter,downstream
28	LOC_Os12g19910	hypothetical protein	gene	hypothetical protein	chr12	11600851	11602795	-	CDS,promoter,downstream
28	LOC_Os03g33100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18936302	18942505	-	CDS,downstream
28	LOC_Os08g19030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11360738	11362141	-	CDS,promoter,downstream
28	LOC_Os03g25700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	14707249	14711359	+	CDS
28	LOC_Os06g17740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10291716	10293717	+	CDS,promoter,downstream
28	LOC_Os02g45960	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	27994680	28000509	+	CDS,promoter
28	LOC_Os05g17090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9755873	9758058	+	CDS,promoter,downstream
28	LOC_Os08g27130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16575355	16577224	-	CDS,promoter
28	LOC_Os07g29140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17063466	17065170	-	CDS
28	LOC_Os01g29700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	16643703	16647008	+	CDS,promoter,downstream
28	LOC_Os07g29980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17655752	17659056	+	CDS,downstream
28	LOC_Os06g35460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20660170	20664084	-	CDS
28	LOC_Os03g10610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	5417012	5418966	-	CDS,downstream
28	LOC_Os04g49640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	29411328	29415267	-	CDS,promoter
28	LOC_Os08g27980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17045010	17051339	+	CDS,downstream
28	LOC_Os08g21110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12609285	12619533	-	CDS,promoter
28	LOC_Os01g37270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20812610	20813050	-	CDS,promoter
28	LOC_Os02g04820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2222760	2224908	-	CDS
28	LOC_Os09g29000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17624640	17629210	-	CDS,promoter,downstream
28	LOC_Os03g31992	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18297675	18299050	+	CDS,promoter,downstream
28	LOC_Os09g02960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1389987	1394882	-	CDS,promoter,downstream
28	LOC_Os10g01960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	601214	604012	-	CDS,promoter,downstream
28	LOC_Os08g38930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	24598677	24600789	-	CDS,promoter
28	LOC_Os08g17030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10427752	10431132	-	CDS,downstream
28	LOC_Os12g25220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14504401	14507051	+	CDS,downstream
28	LOC_Os05g11520	zinc knuckle family protein	gene	zinc knuckle family protein	chr5	6521873	6523447	+	CDS,promoter,downstream
28	LOC_Os07g18640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11019867	11021420	+	CDS,promoter,downstream
28	LOC_Os04g43100	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	25335977	25336844	+	CDS,downstream
28	LOC_Os01g08500	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	4198413	4200316	-	CDS,promoter
28	LOC_Os11g03510	1-aminocyclopropane-1-carboxylate oxidase 1, putative	gene	1-aminocyclopropane-1-carboxylate oxidase 1, putative	chr11	1356279	1358033	+	CDS,promoter
28	LOC_Os04g09510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5085857	5087636	+	CDS,promoter,downstream
28	LOC_Os04g30300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17915952	17919575	-	CDS,downstream
28	LOC_Os12g30400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18215392	18219813	-	CDS,promoter,downstream
28	LOC_Os08g26330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16050333	16051146	+	CDS,downstream
28	LOC_Os03g42930	hypothetical protein	gene	hypothetical protein	chr3	23938210	23941234	-	CDS,promoter,downstream
28	LOC_Os12g18470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10680137	10682408	+	CDS,promoter,downstream
28	LOC_Os12g17810	hypothetical protein	gene	hypothetical protein	chr12	10197971	10200074	-	CDS,promoter
28	LOC_Os12g24400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	13914749	13917908	+	CDS,downstream
28	LOC_Os08g08940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	5195114	5198419	+	CDS,promoter,downstream
28	LOC_Os01g47790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	27344163	27351077	-	CDS,promoter
28	LOC_Os08g28630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17487893	17494112	+	CDS,promoter,downstream
28	LOC_Os08g29990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18418862	18424724	-	CDS,promoter,downstream
28	LOC_Os05g19090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11076746	11079502	-	CDS,promoter
28	LOC_Os06g14160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	7895480	7900970	-	CDS
28	LOC_Os03g36020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19978457	19979580	+	CDS,promoter
28	LOC_Os06g31640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18388291	18392841	+	CDS,promoter
28	LOC_Os02g22390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13374961	13379789	-	CDS
28	LOC_Os02g05390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	2588319	2592400	-	CDS
28	LOC_Os08g39580	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	25040551	25044663	-	CDS,promoter
28	LOC_Os04g05370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2671572	2684730	-	CDS,promoter,downstream
28	LOC_Os11g26620	hypothetical protein	gene	hypothetical protein	chr11	14789690	14793269	+	CDS,downstream
28	LOC_Os01g35960	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	19895260	19898209	-	CDS
28	LOC_Os11g05040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	2197132	2199306	-	CDS
28	LOC_Os02g36170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	21791799	21792944	-	CDS
28	LOC_Os11g16720	hypothetical protein	gene	hypothetical protein	chr11	9258914	9259701	+	CDS,promoter,downstream
28	LOC_Os07g13010	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr7	7459979	7467782	+	CDS,promoter,downstream
28	LOC_Os05g33870	ran GTPase activating protein, putative	gene	ran GTPase activating protein, putative	chr5	19918983	19919933	+	CDS,promoter
28	LOC_Os01g38930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	21868903	21870422	-	CDS,promoter,downstream
28	LOC_Os11g28400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15878788	15883808	+	CDS,promoter,downstream
28	LOC_Os11g28770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16207017	16213021	+	CDS
28	LOC_Os08g35370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22294338	22297602	-	CDS,downstream
28	LOC_Os09g13360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7710293	7712467	+	CDS,promoter
28	LOC_Os09g11870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	6650255	6655572	-	CDS
28	LOC_Os06g37760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22355360	22359553	-	CDS
28	LOC_Os11g27670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	15466758	15468853	-	CDS,promoter,downstream
28	LOC_Os12g35390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21486583	21487042	-	CDS,promoter,downstream
28	LOC_Os10g24600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12554563	12555866	+	CDS,promoter,downstream
28	LOC_Os11g19440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11176983	11178409	+	CDS,promoter,downstream
28	LOC_Os04g45850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	26964194	26965447	+	CDS,promoter
28	LOC_Os04g21270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	11984670	11990825	-	CDS
28	LOC_Os08g10710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	6306277	6310245	-	CDS,promoter
28	LOC_Os12g25320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14581131	14592397	-	CDS,promoter,downstream
28	LOC_Os06g38410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22754312	22757233	+	CDS,promoter,downstream
28	LOC_Os11g43870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	26021556	26023730	+	CDS,promoter,downstream
28	LOC_Os09g20270	hypothetical protein	gene	hypothetical protein	chr9	12156204	12159315	+	CDS,promoter
28	LOC_Os01g24890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14020254	14023132	-	CDS,downstream
28	LOC_Os06g08630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	4289192	4293413	-	CDS,downstream
28	LOC_Os04g24100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	13753270	13757249	-	CDS,promoter
28	LOC_Os09g10190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5542051	5544026	+	CDS,promoter,downstream
28	LOC_Os11g25630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14148448	14150018	+	CDS,downstream
28	LOC_Os12g05520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2526840	2530920	+	CDS,promoter
28	LOC_Os04g48920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28989431	28992356	-	CDS,promoter
28	LOC_Os12g23590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13365582	13369632	-	CDS
28	LOC_Os01g19030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10757600	10761128	-	CDS
28	LOC_Os01g27420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15301240	15307576	+	CDS,promoter
28	LOC_Os01g29720	hypothetical protein	gene	hypothetical protein	chr1	16655032	16655924	+	CDS,promoter,downstream
28	LOC_Os10g14230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	7727937	7730322	+	CDS,downstream
28	LOC_Os04g11630	hypothetical protein	gene	hypothetical protein	chr4	6368044	6371870	+	CDS,promoter
28	LOC_Os06g21068	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12172318	12174253	-	CDS,promoter,downstream
28	LOC_Os04g11220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6114988	6118030	+	CDS,promoter
28	LOC_Os10g17170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8550652	8556143	-	CDS,promoter,downstream
28	LOC_Os09g27530	hypothetical protein	gene	hypothetical protein	chr9	16729967	16730667	+	CDS,promoter,downstream
28	LOC_Os04g28900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16953442	16956370	-	CDS,promoter
28	LOC_Os08g17240	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	10553613	10555522	+	CDS,promoter,downstream
28	LOC_Os05g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13844047	13845405	+	CDS,promoter,downstream
28	LOC_Os11g19330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11068059	11071328	+	CDS,promoter,downstream
28	LOC_Os11g06940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3436849	3437722	-	CDS,downstream
28	LOC_Os06g36500	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	21435108	21441190	-	CDS,downstream
28	LOC_Os11g35630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20422002	20425919	-	CDS
28	LOC_Os01g23960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13474789	13481630	-	CDS,downstream
28	LOC_Os07g13680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7847584	7852472	+	CDS,downstream
28	LOC_Os11g11010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6071149	6072358	+	CDS,downstream
28	LOC_Os08g26450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16111363	16116336	+	CDS,downstream
28	LOC_Os05g11670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	6620859	6622768	+	CDS,promoter,downstream
28	LOC_Os09g13750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8053384	8060110	+	CDS,promoter,downstream
28	LOC_Os08g14470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	8688655	8694810	+	CDS,promoter
28	LOC_Os06g28350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	16125098	16128262	+	CDS,downstream
28	LOC_Os08g06900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3850999	3853180	-	CDS,promoter,downstream
28	LOC_Os08g38180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	24187233	24192022	+	CDS,downstream
28	LOC_Os11g27820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15550666	15551954	-	CDS,promoter,downstream
28	LOC_Os01g09520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	4856087	4862438	+	CDS
28	LOC_Os09g09910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	5384521	5388015	-	CDS,promoter
28	LOC_Os11g14930	hypothetical protein	gene	hypothetical protein	chr11	8396253	8399579	-	CDS,downstream
28	LOC_Os12g16500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	9442970	9449167	+	CDS,promoter,downstream
28	LOC_Os12g26790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15692507	15696919	-	CDS,promoter,downstream
28	LOC_Os07g35100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21020835	21026765	-	CDS,promoter,downstream
28	LOC_Os02g24649	unknown	gene	unknown	chr2	14298045	14298721	+	CDS,promoter,downstream
28	LOC_Os09g22070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13357357	13360396	+	CDS,promoter,downstream
28	LOC_Os10g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11413935	11419904	-	CDS,promoter,downstream
28	LOC_Os09g09860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5354577	5357536	+	CDS,downstream
28	LOC_Os11g16750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9270729	9273076	-	CDS,promoter
28	LOC_Os09g20060	hypothetical protein	gene	hypothetical protein	chr9	12020477	12022219	-	CDS,promoter,downstream
28	LOC_Os09g23310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13837253	13841419	+	CDS,promoter,downstream
28	LOC_Os05g17750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	10202229	10205815	+	CDS,promoter,downstream
28	LOC_Os11g23244	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12941819	12943156	-	CDS,promoter,downstream
28	LOC_Os08g26090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	15863205	15866492	-	CDS
28	LOC_Os11g25410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	14023511	14026768	+	CDS,promoter
28	LOC_Os03g13700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7409257	7414139	+	CDS
28	LOC_Os12g20040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11650125	11655086	+	CDS,promoter,downstream
28	LOC_Os01g16490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9360329	9361576	-	CDS,promoter
28	LOC_Os01g28820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16143804	16144208	+	CDS,promoter,downstream
28	LOC_Os05g16390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9278660	9284401	-	CDS,promoter,downstream
28	LOC_Os12g15206	unknown	gene	unknown	chr12	8663271	8663721	-	CDS,promoter,downstream
28	LOC_Os11g35710	cycloartenol synthase, putative, expressed	gene	cycloartenol synthase, putative, expressed	chr11	20476318	20493605	+	CDS
28	LOC_Os04g44480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26141276	26147413	+	CDS
28	LOC_Os06g22770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13256508	13261277	+	CDS,promoter,downstream
28	LOC_Os12g37820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	23193598	23194689	-	CDS,promoter,downstream
28	LOC_Os03g36239	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20094972	20107524	-	CDS
28	LOC_Os12g17350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9929934	9933040	+	CDS,downstream
28	LOC_Os04g18940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10519404	10521413	-	CDS,promoter,downstream
28	LOC_Os03g06110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3060665	3063121	-	CDS
28	LOC_Os11g13960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	7721853	7725903	-	CDS,promoter,downstream
28	LOC_Os04g27320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	15972633	15976428	+	CDS,promoter,downstream
28	LOC_Os06g14290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	7971114	7976885	+	CDS
28	LOC_Os12g32730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19741136	19744310	+	CDS,promoter,downstream
28	LOC_Os12g23400	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	13237764	13238846	+	CDS,promoter,downstream
28	LOC_Os06g29740	OsFBX197 - F-box domain containing protein	gene	OsFBX197 - F-box domain containing protein	chr6	17076764	17079195	+	CDS,promoter
28	LOC_Os04g14000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7817900	7820464	+	CDS,promoter,downstream
28	LOC_Os04g23570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13466744	13474975	-	CDS
28	LOC_Os06g38603	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22903742	22904860	+	CDS,promoter,downstream
28	LOC_Os11g17830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	9970419	9979429	-	CDS
28	LOC_Os09g11710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6532175	6533062	+	CDS,promoter,downstream
28	LOC_Os04g14700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8247634	8250779	+	CDS,downstream
28	LOC_Os11g12770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7224878	7229988	+	CDS,downstream
28	LOC_Os12g35840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21805298	21808455	-	CDS,promoter
28	LOC_Os11g35130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20129046	20132201	+	CDS,downstream
28	LOC_Os10g07110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	3737057	3738265	+	CDS,promoter,downstream
28	LOC_Os04g15740	DEFL50 - Defensin and Defensin-like DEFL family, expressed	gene	DEFL50 - Defensin and Defensin-like DEFL family, expressed	chr4	8550727	8551238	-	five_prime_UTR,CDS,downstream
28	LOC_Os07g10950	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	5999625	6003537	-	CDS
28	LOC_Os04g27260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	15932779	15935849	-	CDS,promoter,downstream
28	LOC_Os04g07720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4100548	4103650	-	CDS,promoter,downstream
28	LOC_Os06g48450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29313793	29316301	-	CDS,promoter,downstream
28	LOC_Os08g19940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11939022	11940481	-	CDS,promoter,downstream
28	LOC_Os04g20940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11740923	11747216	+	CDS
28	LOC_Os11g30700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17413280	17418089	-	CDS
28	LOC_Os01g27320	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	15244428	15250861	-	CDS,promoter,downstream
28	LOC_Os04g10190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5504415	5507369	+	CDS,promoter,downstream
28	LOC_Os02g49000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29958098	29966763	+	CDS,promoter,downstream
28	LOC_Os01g60220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	34822902	34829057	-	CDS,promoter,downstream
28	LOC_Os11g16630	hypothetical protein	gene	hypothetical protein	chr11	9217753	9221332	-	CDS,downstream
28	LOC_Os07g22740	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12833921	12835600	+	CDS,promoter,downstream
28	LOC_Os05g14440	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr5	8144522	8147159	-	CDS,downstream
28	LOC_Os04g29940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	17686248	17692175	+	CDS
28	LOC_Os05g14629	unknown	gene	unknown	chr5	8329312	8330190	-	CDS,promoter,downstream
28	LOC_Os12g31270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18793648	18793974	-	CDS,promoter,downstream
28	LOC_Os07g24280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13798396	13801921	-	CDS,promoter,downstream
28	LOC_Os04g07420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3941012	3941590	+	CDS,promoter,downstream
28	LOC_Os12g19880	hypothetical protein	gene	hypothetical protein	chr12	11580210	11580473	+	CDS,promoter,downstream
28	LOC_Os06g28360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	16130040	16132285	+	CDS,promoter,downstream
28	LOC_Os07g22880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	12895539	12899086	-	CDS,promoter,downstream
28	LOC_Os11g18810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10666561	10673291	+	CDS,promoter,downstream
28	LOC_Os07g25270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14433388	14438237	+	CDS,promoter
28	LOC_Os02g55860	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	34185762	34188116	-	CDS,promoter
28	LOC_Os04g23340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13314863	13322077	+	CDS
28	LOC_Os10g01180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	127640	128350	+	CDS,promoter
28	LOC_Os07g20430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	11793462	11802637	-	CDS,downstream
28	LOC_Os04g22110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12513595	12522178	+	CDS
28	LOC_Os12g18920	expressed protein	gene	expressed protein	chr12	10976384	10980149	-	CDS,promoter
28	LOC_Os06g39840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23662171	23667724	+	CDS,promoter
28	LOC_Os05g13800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	7649348	7655656	+	CDS,downstream
28	LOC_Os02g29770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17707787	17710889	-	CDS,promoter,downstream
28	LOC_Os11g17780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	9947219	9949273	-	CDS,promoter,downstream
28	LOC_Os12g17190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9837622	9840542	-	CDS,promoter
28	LOC_Os04g22590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12779259	12782921	+	CDS,promoter,downstream
28	LOC_Os06g45200	group 3 pollen allergen, putative	gene	group 3 pollen allergen, putative	chr6	27325494	27327706	-	CDS,promoter,downstream
28	LOC_Os04g26480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	15428347	15434880	+	CDS,promoter
28	LOC_Os03g27650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15846686	15847444	+	CDS,promoter,downstream
28	LOC_Os04g23070	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	13097225	13100950	+	CDS
28	LOC_Os07g14490	OsWAK68 - OsWAK pseudogene	gene	OsWAK68 - OsWAK pseudogene	chr7	8256202	8257257	+	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os12g24610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14076618	14082239	+	CDS,promoter,downstream
28	LOC_Os08g10990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6476460	6479360	-	CDS,promoter,downstream
28	LOC_Os01g37140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20743252	20744740	+	CDS,promoter
28	LOC_Os02g51250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31377010	31378357	+	CDS,promoter,downstream
28	LOC_Os10g02910	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	1185043	1188076	-	CDS
28	LOC_Os10g16630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8220162	8220779	+	CDS,promoter,downstream
28	LOC_Os12g30360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	18197358	18203471	-	CDS
28	LOC_Os11g25670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14180181	14185776	-	CDS,promoter,downstream
28	LOC_Os02g50610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30898909	30903290	+	CDS,promoter,downstream
28	LOC_Os06g18840	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	10703924	10706572	+	CDS,promoter
28	LOC_Os12g26444	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15445907	15450863	-	CDS,promoter
28	LOC_Os04g05190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2584804	2587628	+	CDS,downstream
28	LOC_Os01g51950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29859801	29865379	+	CDS,promoter,downstream
28	LOC_Os03g15450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	8472308	8476860	+	CDS
28	LOC_Os01g32100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17569026	17572162	-	CDS,promoter,downstream
28	LOC_Os12g16950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9709303	9709707	-	CDS,promoter,downstream
28	LOC_Os11g07080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	3523164	3526481	-	CDS,promoter
28	LOC_Os02g24980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14477072	14478682	+	CDS,promoter,downstream
28	LOC_Os07g30690	indole-3-acetate beta-glucosyltransferase, putative, expressed	gene	indole-3-acetate beta-glucosyltransferase, putative, expressed	chr7	18156310	18161401	+	three_prime_UTR,downstream
28	LOC_Os03g39400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	21891898	21898982	-	CDS
28	LOC_Os04g16314	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	8857241	8860175	+	CDS,promoter,downstream
28	LOC_Os01g04960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	2298737	2304323	+	CDS,downstream
28	LOC_Os10g05810	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr10	2934933	2938780	-	CDS,downstream
28	LOC_Os03g36290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20126850	20132053	-	CDS,promoter
28	LOC_Os12g19960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11622503	11623382	+	CDS,promoter,downstream
28	LOC_Os05g02850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1030709	1033570	+	CDS,promoter,downstream
28	LOC_Os10g17310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8634890	8637926	-	CDS,promoter,downstream
28	LOC_Os02g28400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16777308	16787072	-	CDS,promoter
28	LOC_Os08g18830	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	11236654	11241947	-	CDS,promoter,downstream
28	LOC_Os01g06770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	3208141	3214099	+	CDS
28	LOC_Os03g32830	hypothetical protein	gene	hypothetical protein	chr3	18782394	18783040	-	CDS,downstream
28	LOC_Os04g29224	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17156649	17163858	-	CDS,promoter
28	LOC_Os05g52000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29799368	29800003	-	CDS,promoter,downstream
28	LOC_Os08g10180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5900212	5903134	-	CDS,promoter,downstream
28	LOC_Os04g16710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9084111	9084764	-	CDS,promoter
28	LOC_Os06g39210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23278330	23281479	-	CDS,downstream
28	LOC_Os03g24980	SWIM zinc finger family protein, putative	gene	SWIM zinc finger family protein, putative	chr3	14254062	14257218	+	CDS,promoter,downstream
28	LOC_Os06g42300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	25403763	25408025	-	CDS,promoter
28	LOC_Os02g29790	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	17720528	17721480	+	CDS,promoter,downstream
28	LOC_Os04g22980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13030768	13035849	+	CDS,promoter,downstream
28	LOC_Os01g02250	RGA-1, putative	gene	RGA-1, putative	chr1	688792	693013	+	CDS,downstream
28	LOC_Os11g33260	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	19193716	19196477	-	CDS,downstream
28	LOC_Os08g26750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16267999	16269235	-	CDS,promoter,downstream
28	LOC_Os07g28330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16534569	16535432	-	CDS,downstream
28	LOC_Os08g15400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9369461	9373061	-	CDS,promoter,downstream
28	LOC_Os11g10820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	5958438	5965333	+	CDS,downstream
28	LOC_Os08g30940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19101431	19104316	+	CDS,promoter,downstream
28	LOC_Os11g20660	hypothetical protein	gene	hypothetical protein	chr11	11967445	11969012	-	CDS,promoter,downstream
28	LOC_Os04g16580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9011066	9013139	-	CDS,promoter,downstream
28	LOC_Os05g23330	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr5	13258030	13258971	+	CDS,downstream
28	LOC_Os11g28840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16236336	16237230	-	CDS,promoter,downstream
28	LOC_Os10g30826	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	15984065	15985840	-	CDS,promoter,downstream
28	LOC_Os04g04860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2337318	2340139	+	CDS
28	LOC_Os02g20110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11842658	11853298	+	CDS,promoter,downstream
28	LOC_Os04g15890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8615574	8623259	+	CDS,promoter,downstream
28	LOC_Os11g16360	hypothetical protein	gene	hypothetical protein	chr11	9020003	9020224	-	CDS,downstream
28	LOC_Os08g42860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27096067	27098788	-	CDS,promoter,downstream
28	LOC_Os04g12760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7052453	7058417	+	CDS,promoter,downstream
28	LOC_Os05g12360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7106604	7110740	+	CDS,promoter
28	LOC_Os12g13020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7214827	7218261	+	CDS
28	LOC_Os01g39420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	22209774	22213628	-	CDS,promoter
28	LOC_Os10g26490	hypothetical protein	gene	hypothetical protein	chr10	13718264	13721731	+	CDS
28	LOC_Os05g15970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9014718	9020798	-	CDS,promoter,downstream
28	LOC_Os12g12540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6901379	6903914	+	CDS,promoter,downstream
28	LOC_Os09g17520	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	10717518	10724105	+	CDS,promoter
28	LOC_Os06g28690	hypothetical protein	gene	hypothetical protein	chr6	16338517	16339770	+	CDS,promoter,downstream
28	LOC_Os11g18410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10384421	10387190	+	CDS,downstream
28	LOC_Os06g24310	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	14216111	14226612	-	five_prime_UTR,CDS,promoter
28	LOC_Os08g26910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16407695	16411903	+	CDS,promoter,downstream
28	LOC_Os12g08620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4377958	4382102	+	CDS,promoter
28	LOC_Os02g25410	hypothetical protein	gene	hypothetical protein	chr2	14808383	14811709	+	CDS,promoter
28	LOC_Os07g23590	hypothetical protein	gene	hypothetical protein	chr7	13336228	13336521	+	CDS,promoter
28	LOC_Os01g31180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17044480	17046299	-	CDS,promoter,downstream
28	LOC_Os11g11130	hypothetical protein	gene	hypothetical protein	chr11	6151594	6153594	-	CDS,promoter,downstream
28	LOC_Os03g02350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	821248	827403	+	CDS
28	LOC_Os08g20770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12467701	12472008	-	CDS,promoter,downstream
28	LOC_Os12g10800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	5807105	5815178	-	CDS,downstream
28	LOC_Os09g07840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3977157	3979103	+	CDS,promoter,downstream
28	LOC_Os01g35870	hypothetical protein	gene	hypothetical protein	chr1	19857921	19858394	-	CDS,promoter
28	LOC_Os08g18730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11173779	11184717	+	CDS,promoter,downstream
28	LOC_Os05g39480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23105572	23109687	+	CDS,downstream
28	LOC_Os12g26320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	15360408	15365487	-	CDS,promoter
28	LOC_Os09g17950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10985206	10985586	+	CDS,promoter,downstream
28	LOC_Os08g17130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10482033	10489311	-	CDS,promoter
28	LOC_Os05g25100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14477869	14485812	-	CDS,promoter,downstream
28	LOC_Os08g32020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19860041	19863082	+	CDS,downstream
28	LOC_Os03g30360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17311513	17315650	+	CDS,promoter,downstream
28	LOC_Os10g18650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9384185	9388606	-	CDS,promoter,downstream
28	LOC_Os12g26860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15734902	15745682	-	CDS,promoter,downstream
28	LOC_Os11g35940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20641201	20646117	+	CDS
28	LOC_Os01g10410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	5484564	5487110	-	CDS,downstream
28	LOC_Os03g02120	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr3	681778	685712	-	CDS,downstream
28	LOC_Os03g30860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17582165	17586478	+	CDS
28	LOC_Os08g15740	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	9546991	9548481	-	CDS,downstream
28	LOC_Os05g40940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23945845	23947718	-	CDS,promoter,downstream
28	LOC_Os11g16870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9353084	9359057	+	CDS,promoter
28	LOC_Os11g11150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6162651	6165205	-	CDS,promoter
28	LOC_Os04g16810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9205686	9213213	-	CDS,downstream
28	LOC_Os07g11720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6480194	6481182	-	CDS,promoter,downstream
28	LOC_Os12g32440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	19540387	19546403	-	CDS,promoter
28	LOC_Os06g25840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15092625	15096289	-	CDS,promoter,downstream
28	LOC_Os12g22830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	12883810	12886366	+	CDS,promoter,downstream
28	LOC_Os08g29270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17940100	17942425	-	CDS,promoter,downstream
28	LOC_Os05g44850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26005332	26006204	-	CDS,promoter,downstream
28	LOC_Os11g43460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25770890	25775432	+	CDS,promoter,downstream
28	LOC_Os07g24360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13859914	13863569	+	CDS,promoter,downstream
28	LOC_Os10g42980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	23094054	23095770	-	CDS,promoter
28	LOC_Os02g46060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	28059010	28063746	-	CDS
28	LOC_Os12g37190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22772471	22776157	+	CDS,promoter
28	LOC_Os03g20430	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8, putative, expressed	gene	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8, putative, expressed	chr3	11558880	11561282	+	CDS,downstream
28	LOC_Os03g35930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19934673	19935461	+	CDS,promoter,downstream
28	LOC_Os06g19510	hypothetical protein	gene	hypothetical protein	chr6	11107969	11110358	-	CDS,promoter,downstream
28	LOC_Os05g47610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	27213297	27220565	-	CDS
28	LOC_Os08g12350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7273012	7279446	+	CDS,promoter,downstream
28	LOC_Os11g23870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13051009	13055443	+	CDS,promoter
28	LOC_Os06g27600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15617541	15619052	+	CDS,promoter,downstream
28	LOC_Os03g59140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	33660583	33665223	+	CDS
28	LOC_Os01g38200	hypothetical protein	gene	hypothetical protein	chr1	21398848	21399445	-	CDS,promoter
28	LOC_Os03g56360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	32112659	32124630	-	CDS,promoter,downstream
28	LOC_Os05g26330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15259580	15261142	+	CDS,promoter,downstream
28	LOC_Os08g22840	hypothetical protein	gene	hypothetical protein	chr8	13732712	13735745	+	CDS
28	LOC_Os08g08870	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	5151900	5155806	-	CDS,promoter,downstream
28	LOC_Os07g36710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21992418	21994829	-	CDS,downstream
28	LOC_Os05g25075	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	14460309	14462934	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os06g40680	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	24244081	24251401	-	CDS,promoter
28	LOC_Os04g13960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7792580	7798654	+	CDS,promoter,downstream
28	LOC_Os11g14850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8352205	8354213	-	CDS,promoter
28	LOC_Os11g27610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15427059	15431801	+	CDS,promoter
28	LOC_Os06g48140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29120168	29123346	-	CDS,promoter,downstream
28	LOC_Os01g31160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17036687	17041231	-	CDS,promoter
28	LOC_Os12g09164	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4789962	4793210	-	CDS,promoter
28	LOC_Os02g15150	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	8446600	8448700	+	CDS,three_prime_UTR,five_prime_UTR,downstream
28	LOC_Os07g27220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15815889	15818380	+	CDS,promoter,downstream
28	LOC_Os12g25340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14612364	14615378	+	CDS,promoter,downstream
28	LOC_Os08g28520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17414593	17416664	-	CDS,promoter,downstream
28	LOC_Os02g35580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	21399799	21402998	-	CDS,downstream
28	LOC_Os04g07020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3725793	3731903	-	CDS,promoter,downstream
28	LOC_Os06g27730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15703878	15705912	+	CDS,promoter,downstream
28	LOC_Os09g10900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5985513	5988914	+	CDS
28	LOC_Os09g13080	hypothetical protein	gene	hypothetical protein	chr9	7535822	7537000	-	CDS,promoter
28	LOC_Os07g23070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13011350	13016813	+	CDS,promoter,downstream
28	LOC_Os11g12830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7274343	7276635	-	CDS,promoter
28	LOC_Os03g37450	hypothetical protein	gene	hypothetical protein	chr3	20763367	20765773	+	CDS,promoter
28	LOC_Os07g06510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	3156894	3159074	+	CDS
28	LOC_Os03g57820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	32937211	32940305	+	CDS,promoter,downstream
28	LOC_Os04g23990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	13700344	13704504	-	CDS,downstream
28	LOC_Os06g37100	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	21908548	21914703	-	CDS
28	LOC_Os01g09960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	5175246	5182614	+	CDS
28	LOC_Os09g01810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	559258	562200	+	CDS,promoter,downstream
28	LOC_Os06g31589	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18369637	18372149	-	CDS,promoter,downstream
28	LOC_Os01g24630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13867466	13873621	-	CDS
28	LOC_Os07g33260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	19871841	19877996	-	CDS,promoter,downstream
28	LOC_Os01g63750	glycine-rich protein, putative	gene	glycine-rich protein, putative	chr1	36980046	36980724	+	CDS,promoter,downstream
28	LOC_Os12g16100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9189762	9192917	+	CDS,downstream
28	LOC_Os09g22300	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	13473960	13474328	-	CDS,promoter,downstream
28	LOC_Os01g36850	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr1	20517636	20520496	-	five_prime_UTR,CDS,promoter
28	LOC_Os02g22220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13251320	13252030	-	CDS,promoter
28	LOC_Os10g10590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5866694	5869051	+	CDS,promoter,downstream
28	LOC_Os07g27080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15693349	15699047	+	CDS,promoter,downstream
28	LOC_Os10g08210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4454435	4455757	+	CDS,promoter,downstream
28	LOC_Os02g24510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14197420	14202870	-	CDS,downstream
28	LOC_Os02g26870	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	15774586	15777808	+	CDS,downstream
28	LOC_Os12g24340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13888337	13889009	+	CDS,downstream
28	LOC_Os10g40890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	21900318	21905503	+	CDS
28	LOC_Os12g01330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	185658	188403	+	CDS,promoter,downstream
28	LOC_Os11g20590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11928446	11931750	-	CDS,promoter
28	LOC_Os12g16710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9569197	9576126	-	CDS
28	LOC_Os06g24530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	14378943	14382469	+	CDS
28	LOC_Os06g32080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18654009	18660717	+	CDS,promoter,downstream
28	LOC_Os08g04510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2217932	2223891	-	CDS
28	LOC_Os09g10520	hypothetical protein	gene	hypothetical protein	chr9	5733833	5734254	-	CDS,promoter,downstream
28	LOC_Os05g41850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24443516	24449059	+	CDS,downstream
28	LOC_Os08g14130	hypothetical protein	gene	hypothetical protein	chr8	8447638	8448673	+	CDS,downstream
28	LOC_Os01g24294	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13683356	13693271	-	CDS,promoter,downstream
28	LOC_Os12g08330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4241568	4245301	-	CDS,promoter
28	LOC_Os09g06870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3289248	3291963	-	CDS,promoter
28	LOC_Os12g41080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	25400530	25404876	+	CDS,downstream
28	LOC_Os07g25010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14248223	14251895	-	CDS
28	LOC_Os06g35580	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	20762726	20764164	+	CDS
28	LOC_Os02g13930	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	7582245	7586531	-	CDS,downstream
28	LOC_Os12g43050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26702127	26708907	-	CDS,promoter,downstream
28	LOC_Os12g22140	glycerol 3-phosphate permease, putative	gene	glycerol 3-phosphate permease, putative	chr12	12448038	12452397	+	CDS,downstream
28	LOC_Os03g36970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20502112	20502705	-	CDS,promoter,downstream
28	LOC_Os04g21510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12154326	12160222	+	CDS,promoter,downstream
28	LOC_Os08g29460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18054172	18055195	+	CDS,promoter,downstream
28	LOC_Os12g30660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18388010	18388858	+	CDS,downstream
28	LOC_Os05g06590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3404845	3407659	+	CDS,promoter
28	LOC_Os04g13690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7631856	7634613	+	CDS,downstream
28	LOC_Os08g35260	hypothetical protein	gene	hypothetical protein	chr8	22245575	22247065	-	CDS,downstream
28	LOC_Os03g26580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15182748	15184443	-	CDS,promoter,downstream
28	LOC_Os08g29920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18379338	18382252	+	CDS,promoter,downstream
28	LOC_Os11g36790	OsFBO6 - F-box and other domain containing protein, expressed	gene	OsFBO6 - F-box and other domain containing protein, expressed	chr11	21253207	21258083	+	CDS,promoter
28	LOC_Os10g20619	unknown	gene	unknown	chr10	10336431	10336775	+	CDS,promoter,downstream
28	LOC_Os08g13500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8031242	8034172	+	CDS,promoter,downstream
28	LOC_Os10g20780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	10470929	10471981	-	CDS,promoter
28	LOC_Os03g34110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19435851	19436678	-	CDS,promoter,downstream
28	LOC_Os01g23310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	13089214	13093280	+	CDS,promoter,downstream
28	LOC_Os09g25510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	15299004	15302471	+	CDS,downstream
28	LOC_Os06g49720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	30078060	30080578	+	CDS,promoter,downstream
28	LOC_Os03g13680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7396783	7399813	-	CDS,promoter,downstream
28	LOC_Os07g16470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9646140	9648486	+	CDS,promoter,downstream
28	LOC_Os11g10230	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5546304	5550030	-	CDS,promoter
28	LOC_Os11g08889	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4705407	4706564	-	CDS,promoter,downstream
28	LOC_Os08g12230	expressed protein	gene	expressed protein	chr8	7202557	7204853	-	three_prime_UTR
28	LOC_Os09g16680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10214246	10216267	+	CDS,downstream
28	LOC_Os07g32220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	19139421	19142512	+	CDS,promoter,downstream
28	LOC_Os12g29874	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17835589	17837749	+	CDS,promoter
28	LOC_Os03g14349	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	7804398	7808757	-	CDS
28	LOC_Os04g19360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10761231	10767987	-	CDS,promoter,downstream
28	LOC_Os06g49600	hypothetical protein	gene	hypothetical protein	chr6	30022779	30023532	+	CDS,promoter,downstream
28	LOC_Os04g28650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	16798347	16805637	+	CDS,downstream
28	LOC_Os09g10140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5514334	5517536	-	CDS,promoter,downstream
28	LOC_Os09g16630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10196559	10196987	-	CDS,promoter,downstream
28	LOC_Os01g34530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19032365	19035175	-	CDS,promoter
28	LOC_Os08g31390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19403282	19405685	-	CDS,promoter,downstream
28	LOC_Os04g22000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12445991	12448569	+	CDS,promoter,downstream
28	LOC_Os06g38260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22635631	22637917	+	CDS,promoter,downstream
28	LOC_Os10g18960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9581668	9584041	-	CDS,promoter,downstream
28	LOC_Os11g28850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16239161	16240177	-	CDS,promoter,downstream
28	LOC_Os09g04410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2331692	2334237	+	CDS
28	LOC_Os04g18020	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	9917693	9922485	+	three_prime_UTR,promoter,downstream
28	LOC_Os10g10110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5537753	5540918	-	CDS,promoter
28	LOC_Os08g28280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17260952	17262779	-	CDS,promoter
28	LOC_Os04g53010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	31384181	31390099	+	CDS
28	LOC_Os03g04800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	2281137	2284088	-	CDS,promoter
28	LOC_Os04g12300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6785954	6786987	+	CDS,promoter,downstream
28	LOC_Os06g42710	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr6	25683526	25687067	+	CDS,downstream
28	LOC_Os08g25350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15416156	15419477	-	CDS
28	LOC_Os01g21840	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	12249961	12256693	+	CDS
28	LOC_Os11g43090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25525281	25526630	+	CDS,promoter,downstream
28	LOC_Os02g31120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18599144	18603219	-	CDS,promoter
28	LOC_Os06g35150	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr6	20471293	20474639	-	CDS
28	LOC_Os07g17140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10068912	10073780	-	CDS,downstream
28	LOC_Os05g05050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	2454258	2459686	-	CDS
28	LOC_Os06g31920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	18548049	18552657	-	CDS,promoter
28	LOC_Os11g30460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17241995	17245783	-	CDS,promoter
28	LOC_Os12g29110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17226479	17227105	-	CDS,promoter,downstream
28	LOC_Os09g06650	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3157223	3162276	+	CDS,promoter
28	LOC_Os01g63760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36981088	36984876	-	CDS,promoter
28	LOC_Os11g24990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13764773	13771911	+	CDS,downstream
28	LOC_Os01g63550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36845794	36850003	-	CDS,downstream
28	LOC_Os02g35520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	21348298	21350621	+	CDS,downstream
28	LOC_Os06g32040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	18626323	18627595	+	CDS,promoter,downstream
28	LOC_Os12g28340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16750698	16753636	-	CDS,promoter,downstream
28	LOC_Os05g24320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14012318	14013980	+	CDS,promoter,downstream
28	LOC_Os04g09360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4971625	4980154	+	CDS,downstream
28	LOC_Os07g16520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9682147	9686658	-	CDS,promoter,downstream
28	LOC_Os10g18730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9448481	9449614	+	CDS,promoter,downstream
28	LOC_Os01g32630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17886458	17891900	-	CDS,promoter
28	LOC_Os04g12280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6775131	6777425	+	CDS,promoter,downstream
28	LOC_Os02g48420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	29643259	29648155	-	CDS
28	LOC_Os07g32180	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	19112300	19116522	-	CDS,promoter
28	LOC_Os12g18420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	10654737	10657484	+	CDS,promoter,downstream
28	LOC_Os11g08450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	4456507	4458300	-	CDS
28	LOC_Os04g10080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	5439618	5440868	-	CDS,promoter,downstream
28	LOC_Os10g12160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6778795	6786622	+	CDS,downstream
28	LOC_Os11g10970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6045943	6052334	-	CDS
28	LOC_Os05g33800	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	19855127	19856483	-	CDS,promoter
28	LOC_Os05g17120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9784594	9797708	+	CDS,promoter,downstream
28	LOC_Os05g17840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10261357	10266162	+	CDS,promoter
28	LOC_Os05g24390	hypothetical protein	gene	hypothetical protein	chr5	14040647	14041532	-	CDS,promoter,downstream
28	LOC_Os05g14600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8320115	8323738	-	CDS
28	LOC_Os11g47446	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28123052	28127486	-	CDS
28	LOC_Os11g20510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11875665	11881883	+	CDS,promoter,downstream
28	LOC_Os04g04840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2324242	2324786	+	CDS,downstream
28	LOC_Os07g20240	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	11669474	11672835	+	CDS,three_prime_UTR,downstream
28	LOC_Os11g24320	OsSCP52 - Putative Serine Carboxypeptidase homologue	gene	OsSCP52 - Putative Serine Carboxypeptidase homologue	chr11	13389028	13392747	-	CDS,promoter,downstream
28	LOC_Os04g29780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	17574549	17576568	+	CDS,downstream
28	LOC_Os10g17350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8666129	8672113	+	CDS,promoter,downstream
28	LOC_Os06g48380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29254940	29260646	-	CDS,promoter,downstream
28	LOC_Os01g53960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	31021562	31027925	-	CDS,downstream
28	LOC_Os10g19290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9753459	9754976	-	CDS,promoter
28	LOC_Os03g44550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25079652	25081189	-	CDS,downstream
28	LOC_Os04g11280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6157488	6159760	-	CDS,promoter,downstream
28	LOC_Os09g20300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12177514	12179364	+	CDS,downstream
28	LOC_Os12g25460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14728807	14730304	+	CDS,promoter,downstream
28	LOC_Os12g01870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	507740	512526	+	CDS,promoter
28	LOC_Os10g17800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8934622	8935761	+	CDS,promoter,downstream
28	LOC_Os12g19990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11637944	11638874	-	CDS,promoter
28	LOC_Os12g33810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20360238	20362652	-	CDS,promoter,downstream
28	LOC_Os08g25160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15278941	15279773	-	CDS,downstream
28	LOC_Os07g17940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10610533	10610808	-	CDS,promoter,downstream
28	LOC_Os07g14040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8012134	8014444	+	CDS,downstream
28	LOC_Os05g07550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4040659	4043602	-	CDS,promoter,downstream
28	LOC_Os10g13420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7261621	7263900	+	CDS,promoter,downstream
28	LOC_Os12g42470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26354035	26354659	-	CDS,promoter
28	LOC_Os04g23260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13264302	13266537	-	CDS,downstream
28	LOC_Os11g25430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14034788	14036579	+	CDS,promoter
28	LOC_Os06g32140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	18708854	18714446	-	CDS,promoter,downstream
28	LOC_Os07g25260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14429196	14430578	-	CDS,promoter,downstream
28	LOC_Os02g24280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	14075659	14080420	-	CDS,downstream
28	LOC_Os02g26640	hypothetical protein	gene	hypothetical protein	chr2	15632827	15633604	-	CDS,promoter,downstream
28	LOC_Os07g10000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	5338910	5340205	+	CDS,promoter,downstream
28	LOC_Os09g16690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10216590	10219640	-	CDS,promoter,downstream
28	LOC_Os10g02560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	964871	968074	-	CDS,promoter,downstream
28	LOC_Os07g33170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19800536	19804358	+	CDS,promoter,downstream
28	LOC_Os01g63740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36975102	36978831	-	CDS,downstream
28	LOC_Os10g20190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10065776	10071252	-	CDS,promoter,downstream
28	LOC_Os11g18430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10394044	10395847	+	CDS,promoter,downstream
28	LOC_Os05g29140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17061771	17065997	+	CDS,promoter,downstream
28	LOC_Os08g26990	response regulator receiver domain containing protein, expressed	gene	response regulator receiver domain containing protein, expressed	chr8	16486779	16487614	+	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os12g22970	expressed protein	gene	expressed protein	chr12	12984242	12987108	+	CDS,three_prime_UTR,promoter
28	LOC_Os04g06420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3341875	3345520	-	CDS,downstream
28	LOC_Os03g43040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24008548	24011995	+	CDS,promoter
28	LOC_Os05g52070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29832457	29846986	-	CDS
28	LOC_Os02g40940	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	24801452	24805997	+	CDS,downstream
28	LOC_Os04g15610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8481652	8487750	+	CDS,downstream
28	LOC_Os09g03710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1868998	1874215	-	CDS,promoter
28	LOC_Os01g34230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18874470	18875291	+	CDS,downstream
28	LOC_Os09g18090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	11086287	11089484	+	CDS,downstream
28	LOC_Os08g16160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9846788	9849763	+	CDS,promoter,downstream
28	LOC_Os03g34140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19444581	19446846	-	CDS,promoter,downstream
28	LOC_Os10g22000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11288280	11291816	+	CDS,downstream
28	LOC_Os11g23840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13027058	13028899	-	CDS,promoter,downstream
28	LOC_Os05g17630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10142260	10149270	-	CDS,promoter,downstream
28	LOC_Os10g03210	hypothetical protein	gene	hypothetical protein	chr10	1354415	1355484	+	CDS,promoter
28	LOC_Os01g70630	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	40883523	40890416	+	CDS,promoter
28	LOC_Os02g22720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13533243	13538609	+	CDS,promoter,downstream
28	LOC_Os03g60230	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	34241086	34244994	+	CDS,downstream
28	LOC_Os10g04230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	1970082	1972750	-	CDS,promoter,downstream
28	LOC_Os06g07520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3614983	3619557	-	CDS,downstream
28	LOC_Os10g18580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9348862	9352146	+	CDS,promoter,downstream
28	LOC_Os03g15140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8267769	8272819	+	CDS,promoter,downstream
28	LOC_Os05g18040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10377639	10379099	+	CDS,promoter,downstream
28	LOC_Os07g06000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2900947	2903905	+	CDS,promoter,downstream
28	LOC_Os04g08816	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4826499	4830694	-	CDS,promoter
28	LOC_Os12g10040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5316454	5320877	+	CDS,promoter,downstream
28	LOC_Os03g34129	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19440048	19442069	-	CDS,promoter,downstream
28	LOC_Os12g29900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17845581	17846826	+	CDS,promoter,downstream
28	LOC_Os11g22480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12458362	12460719	-	CDS,promoter,downstream
28	LOC_Os03g32720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18743301	18744319	+	CDS,promoter,downstream
28	LOC_Os12g08550	expressed protein	gene	expressed protein	chr12	4332997	4337929	-	three_prime_UTR,promoter,downstream
28	LOC_Os10g14795	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7764096	7769554	-	CDS
28	LOC_Os12g14720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8421649	8430214	+	CDS,downstream
28	LOC_Os06g19854	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11335843	11345775	-	CDS,promoter
28	LOC_Os07g18900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11199333	11202113	+	CDS,promoter,downstream
28	LOC_Os01g33350	zinc-binding protein, putative, expressed	gene	zinc-binding protein, putative, expressed	chr1	18363910	18365395	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os07g19140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11328656	11333367	+	CDS,promoter
28	LOC_Os04g41270	hypothetical protein	gene	hypothetical protein	chr4	24307391	24310415	+	CDS
28	LOC_Os12g28430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16799817	16801753	+	CDS,promoter,downstream
28	LOC_Os07g23230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13093474	13094842	+	CDS,promoter,downstream
28	LOC_Os05g06570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3392810	3395856	+	CDS,downstream
28	LOC_Os12g12410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6835475	6840040	-	CDS
28	LOC_Os11g37750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	21855451	21858860	+	CDS,promoter
28	LOC_Os08g17050	hypothetical protein	gene	hypothetical protein	chr8	10441930	10442478	-	CDS,promoter
28	LOC_Os05g48350	hypothetical protein	gene	hypothetical protein	chr5	27657183	27657428	-	CDS,downstream
28	LOC_Os06g42980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25817483	25823638	-	CDS,downstream
28	LOC_Os02g25160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14623316	14625380	-	CDS,promoter,downstream
28	LOC_Os02g24840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14395944	14397155	+	CDS,promoter
28	LOC_Os11g35560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20378786	20390796	-	CDS,downstream
28	LOC_Os01g60380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34923884	34928302	+	CDS,promoter,downstream
28	LOC_Os03g13920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	7546179	7552429	-	CDS
28	LOC_Os11g20520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11885660	11888630	-	CDS,promoter
28	LOC_Os01g28330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15865843	15871940	+	CDS,promoter,downstream
28	LOC_Os12g35540	hypothetical protein	gene	hypothetical protein	chr12	21575356	21580060	+	CDS,promoter
28	LOC_Os08g19890	ZOS8-03 - C2H2 zinc finger protein	gene	ZOS8-03 - C2H2 zinc finger protein	chr8	11910498	11919328	-	CDS,promoter
28	LOC_Os07g41430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	24815593	24822318	-	CDS,promoter,downstream
28	LOC_Os02g28690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16963302	16964414	+	CDS
28	LOC_Os03g16550	hypothetical protein	gene	hypothetical protein	chr3	9122762	9123082	-	CDS,promoter,downstream
28	LOC_Os04g07960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4234910	4235290	+	CDS,promoter,downstream
28	LOC_Os11g36330	hypothetical protein	gene	hypothetical protein	chr11	20939561	20940249	+	CDS
28	LOC_Os11g21790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12035307	12039175	-	CDS,promoter,downstream
28	LOC_Os10g06440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3312338	3314612	+	CDS,promoter,downstream
28	LOC_Os09g13550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7855323	7858655	+	CDS,downstream
28	LOC_Os08g31370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	19393717	19397076	-	CDS,downstream
28	LOC_Os12g14270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8118950	8121879	-	CDS,promoter,downstream
28	LOC_Os08g20210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	12122765	12126988	+	CDS,downstream
28	LOC_Os01g19710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11176100	11179580	-	CDS,promoter,downstream
28	LOC_Os12g15670	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	8947495	8955181	-	CDS,promoter
28	LOC_Os06g32180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	18738000	18739656	-	CDS,promoter
28	LOC_Os05g49110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	28102109	28106251	-	CDS,promoter
28	LOC_Os05g39540	metal cation transporter, putative, expressed	gene	metal cation transporter, putative, expressed	chr5	23141972	23150720	+	CDS,three_prime_UTR
28	LOC_Os11g20480	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	11856556	11861210	-	CDS,promoter
28	LOC_Os03g35650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19744528	19747012	+	CDS,promoter,downstream
28	LOC_Os07g27210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15812719	15815394	-	CDS,promoter,downstream
28	LOC_Os10g04290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	2017932	2031362	+	CDS,downstream
28	LOC_Os11g25300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13949166	13950308	+	CDS,downstream
28	LOC_Os10g18840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9519581	9524461	-	CDS
28	LOC_Os10g37560	expressed protein	gene	expressed protein	chr10	20032925	20035667	-	CDS,downstream
28	LOC_Os04g07240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3836875	3839687	-	CDS,promoter,downstream
28	LOC_Os04g09840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5276668	5282823	-	CDS,promoter
28	LOC_Os10g21740	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	11087298	11088755	+	CDS,promoter,downstream
28	LOC_Os10g24230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12340098	12346415	-	CDS,promoter,downstream
28	LOC_Os06g25170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14723713	14728036	+	CDS,promoter
28	LOC_Os09g04930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2642949	2646968	+	CDS,downstream
28	LOC_Os11g18790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10658123	10663239	-	CDS
28	LOC_Os08g22790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13698324	13705853	+	CDS
28	LOC_Os11g12130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6759749	6763708	-	CDS,downstream
28	LOC_Os07g34860	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	20890088	20894310	+	CDS,promoter,downstream
28	LOC_Os07g33700	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	20135368	20141451	+	CDS
28	LOC_Os06g32740	OsSCP35 - Putative Serine Carboxypeptidase homologue	gene	OsSCP35 - Putative Serine Carboxypeptidase homologue	chr6	19038412	19042904	+	CDS
28	LOC_Os08g03080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1376080	1385199	+	CDS,promoter
28	LOC_Os03g49060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27944174	27945031	-	CDS
28	LOC_Os08g34110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	21385205	21389171	-	CDS,promoter
28	LOC_Os04g06820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3588829	3592744	-	CDS,promoter,downstream
28	LOC_Os05g51260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29335267	29338571	-	CDS,promoter,downstream
28	LOC_Os08g19460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11621927	11624356	-	CDS,promoter,downstream
28	LOC_Os04g10990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5970096	5971235	-	CDS,promoter
28	LOC_Os12g34180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20685709	20692436	-	CDS,promoter,downstream
28	LOC_Os01g04150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	1824436	1828373	-	CDS,promoter
28	LOC_Os04g21410	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	12087447	12092577	-	CDS,promoter,downstream
28	LOC_Os10g14970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7854495	7855952	+	CDS,promoter,downstream
28	LOC_Os08g31320	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	19368899	19370778	+	CDS,promoter
28	LOC_Os10g01600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	392827	397702	-	CDS,promoter,downstream
28	LOC_Os08g28290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17265658	17266197	+	CDS,promoter,downstream
28	LOC_Os06g17520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10157496	10164259	+	CDS,promoter,downstream
28	LOC_Os09g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14491085	14493131	+	CDS,downstream
28	LOC_Os11g25640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14154633	14160251	+	CDS,promoter,downstream
28	LOC_Os01g01900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	487085	491952	-	CDS,promoter,downstream
28	LOC_Os04g02960	OsSub32 - Putative Subtilisin homologue	gene	OsSub32 - Putative Subtilisin homologue	chr4	1179899	1192646	+	CDS,promoter
28	LOC_Os05g35680	hypothetical protein	gene	hypothetical protein	chr5	21132166	21133388	-	CDS,downstream
28	LOC_Os07g36000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21531750	21536682	-	CDS
28	LOC_Os07g45750	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	27308725	27315564	-	CDS
28	LOC_Os02g27350	expressed protein	gene	expressed protein	chr2	16105743	16108460	+	CDS
28	LOC_Os08g43110	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	27252778	27257301	+	CDS
28	LOC_Os02g29870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17754217	17762511	-	CDS
28	LOC_Os03g33540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19166046	19166505	-	CDS,promoter
28	LOC_Os05g10520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5717407	5722214	+	CDS,promoter
28	LOC_Os02g43060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	25925642	25928035	+	CDS,downstream
28	LOC_Os05g44670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25913371	25914910	-	CDS,downstream
28	LOC_Os09g14160	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr9	8381224	8384511	+	CDS,downstream
28	LOC_Os06g22520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13082345	13089236	-	CDS,promoter,downstream
28	LOC_Os03g08400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	4292142	4296459	-	CDS,promoter,downstream
28	LOC_Os06g27550	hypothetical protein	gene	hypothetical protein	chr6	15595294	15596839	+	CDS,promoter,downstream
28	LOC_Os11g40460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23669480	23673440	-	CDS,downstream
28	LOC_Os07g16630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9758008	9764791	+	CDS,promoter,downstream
28	LOC_Os03g41190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	22905132	22908443	+	CDS,promoter,downstream
28	LOC_Os11g06610	jasmonate-induced protein, putative	gene	jasmonate-induced protein, putative	chr11	3190193	3191111	+	CDS,promoter
28	LOC_Os03g14060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	7635548	7640684	+	CDS
28	LOC_Os06g44290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	26725078	26730902	+	CDS
28	LOC_Os09g13980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8233601	8236630	+	CDS,promoter
28	LOC_Os03g24010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13619208	13622106	-	CDS
28	LOC_Os11g17430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9708732	9713791	+	CDS
28	LOC_Os11g27210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15195177	15201300	-	CDS
28	LOC_Os05g16270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9206912	9212652	-	CDS,promoter,downstream
28	LOC_Os12g26920	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	15767690	15769491	-	CDS,promoter,downstream
28	LOC_Os07g13690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7854036	7856960	-	CDS,promoter
28	LOC_Os06g07290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3493534	3499016	+	CDS,downstream
28	LOC_Os07g24180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13737304	13738118	+	CDS,promoter,downstream
28	LOC_Os12g12429	unknown	gene	unknown	chr12	6843871	6845114	+	CDS,downstream
28	LOC_Os01g66460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	38584604	38587697	-	CDS,promoter,downstream
28	LOC_Os08g42259	hypothetical protein	gene	hypothetical protein	chr8	26682102	26684128	-	CDS
28	LOC_Os04g16550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8992376	8998465	-	CDS,promoter,downstream
28	LOC_Os01g22180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12464921	12469844	+	CDS,promoter,downstream
28	LOC_Os05g15190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8619623	8623222	+	CDS,downstream
28	LOC_Os05g19870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11574704	11581430	-	CDS,promoter,downstream
28	LOC_Os12g10430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5523867	5528355	+	CDS,promoter,downstream
28	LOC_Os07g23030	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr7	12988638	12994544	-	five_prime_UTR,three_prime_UTR,promoter,downstream
28	LOC_Os12g29100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17221061	17225626	+	CDS,promoter,downstream
28	LOC_Os04g02330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	813633	816011	-	CDS,promoter
28	LOC_Os07g33010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19716466	19722621	-	CDS,downstream
28	LOC_Os09g21990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	13310530	13312710	+	CDS,promoter
28	LOC_Os11g46910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27664575	27673381	-	CDS
28	LOC_Os03g42950	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	23945215	23952651	+	CDS,three_prime_UTR,promoter
28	LOC_Os08g34420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21602958	21607361	+	CDS,promoter,downstream
28	LOC_Os12g33370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20151941	20154556	+	CDS,promoter,downstream
28	LOC_Os01g17110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	9834434	9835185	+	CDS,promoter,downstream
28	LOC_Os02g18120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	10529626	10532251	-	CDS,promoter
28	LOC_Os04g06610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3476388	3481775	-	CDS,promoter,downstream
28	LOC_Os12g19830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11564348	11565343	-	CDS,promoter,downstream
28	LOC_Os08g11850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6948331	6952776	-	CDS,downstream
28	LOC_Os01g16740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	9502232	9509090	-	CDS,promoter
28	LOC_Os04g23190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13179477	13181910	-	CDS,promoter,downstream
28	LOC_Os10g36380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	19370557	19376321	-	CDS,promoter
28	LOC_Os12g09490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4976008	4978837	-	CDS,promoter,downstream
28	LOC_Os08g16390	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	10019622	10021128	+	CDS,promoter,downstream
28	LOC_Os06g50630	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	30644087	30651386	-	CDS,downstream
28	LOC_Os11g27900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15591757	15593934	-	CDS,promoter,downstream
28	LOC_Os11g18250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10281990	10283998	+	CDS,promoter,downstream
28	LOC_Os04g11150	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6057536	6059431	+	CDS,downstream
28	LOC_Os06g03450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1319618	1320495	+	CDS,promoter
28	LOC_Os02g18040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	10464527	10476665	+	CDS
28	LOC_Os01g16050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	9028431	9033373	-	CDS,downstream
28	LOC_Os06g16010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9108848	9111886	+	CDS,promoter,downstream
28	LOC_Os04g06100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3162920	3165986	-	CDS,downstream
28	LOC_Os10g11430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6343093	6347592	+	CDS,downstream
28	LOC_Os07g43650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26132209	26135302	+	CDS,promoter
28	LOC_Os10g26430	agenet domain containing protein	gene	agenet domain containing protein	chr10	13685159	13692168	+	CDS,promoter
28	LOC_Os12g29780	hypothetical protein	gene	hypothetical protein	chr12	17773550	17774802	+	CDS,downstream
28	LOC_Os11g18890	hypothetical protein	gene	hypothetical protein	chr11	10742373	10744461	+	CDS
28	LOC_Os04g44630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	26222651	26227248	+	CDS,promoter,downstream
28	LOC_Os09g04660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2480419	2484993	+	CDS,promoter,downstream
28	LOC_Os03g30010	hypothetical protein	gene	hypothetical protein	chr3	17118216	17120206	-	CDS,promoter,downstream
28	LOC_Os03g24990	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr3	14257472	14261289	-	CDS,promoter
28	LOC_Os11g09390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	5032384	5033196	+	CDS,promoter,downstream
28	LOC_Os10g16810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8304032	8306543	-	CDS,promoter,downstream
28	LOC_Os05g08880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4904230	4909609	+	CDS,promoter,downstream
28	LOC_Os12g26660	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	15623744	15626162	+	CDS,downstream
28	LOC_Os06g33300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19386054	19387848	-	CDS,promoter
28	LOC_Os11g29160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16439439	16440946	-	CDS,promoter,downstream
28	LOC_Os12g35140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21348979	21351408	+	CDS,promoter,downstream
28	LOC_Os08g20486	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr8	12292341	12299169	-	CDS,promoter
28	LOC_Os02g25990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15252719	15255459	-	CDS,downstream
28	LOC_Os07g20300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11711480	11712869	+	CDS,promoter,downstream
28	LOC_Os09g04030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2068645	2071391	+	CDS,promoter,downstream
28	LOC_Os03g04150	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	1897913	1901191	-	CDS,downstream
28	LOC_Os06g47730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	28880110	28886003	+	CDS
28	LOC_Os10g16600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8203605	8210272	-	CDS,promoter,downstream
28	LOC_Os05g47740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	27285470	27289692	+	CDS
28	LOC_Os06g22750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13229120	13232427	-	CDS,promoter,downstream
28	LOC_Os10g16760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	8276918	8280340	+	CDS,promoter,downstream
28	LOC_Os09g07170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3508853	3517481	+	CDS,downstream
28	LOC_Os01g50180	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	28838359	28844172	+	CDS
28	LOC_Os06g35270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20560507	20563444	-	CDS,promoter,downstream
28	LOC_Os06g29600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	16974086	16978325	+	CDS
28	LOC_Os11g05710	hypothetical protein	gene	hypothetical protein	chr11	2614264	2616447	+	CDS,downstream
28	LOC_Os02g43450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26212956	26220376	-	CDS
28	LOC_Os10g09350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5062816	5068904	+	CDS,promoter,downstream
28	LOC_Os07g04090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	1735294	1736757	-	CDS,promoter,downstream
28	LOC_Os11g03940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	1571289	1583920	-	CDS
28	LOC_Os05g24120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13852592	13858176	+	CDS,promoter,downstream
28	LOC_Os01g26190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14840129	14843240	-	CDS,promoter,downstream
28	LOC_Os01g41590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23546200	23548050	-	CDS,promoter
28	LOC_Os05g27410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15879476	15881652	+	CDS,downstream
28	LOC_Os09g02750	expressed protein	gene	expressed protein	chr9	1239588	1242978	-	CDS,downstream
28	LOC_Os11g26480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14711632	14713257	-	CDS,promoter,downstream
28	LOC_Os01g33370	zinc-binding protein, putative, expressed	gene	zinc-binding protein, putative, expressed	chr1	18373719	18375622	-	five_prime_UTR,CDS,downstream
28	LOC_Os01g23930	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13460418	13466453	-	CDS
28	LOC_Os07g17540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10366025	10368902	+	CDS,promoter
28	LOC_Os03g23250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13450192	13456855	+	CDS,promoter
28	LOC_Os11g20640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	11955448	11961986	-	CDS,downstream
28	LOC_Os11g31670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18057324	18058964	-	CDS,promoter,downstream
28	LOC_Os01g14490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8114555	8119284	-	CDS
28	LOC_Os07g24520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13953119	13959760	+	CDS,promoter,downstream
28	LOC_Os06g31450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18302436	18305855	+	CDS,promoter
28	LOC_Os05g15440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8728748	8730848	+	CDS,promoter,downstream
28	LOC_Os03g43550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24313652	24318094	-	CDS,promoter,downstream
28	LOC_Os10g01950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	597116	600886	-	CDS,promoter,downstream
28	LOC_Os11g18480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10414379	10416504	-	CDS,promoter,downstream
28	LOC_Os10g05270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	2605761	2608093	+	CDS,promoter,downstream
28	LOC_Os01g28660	hypothetical protein	gene	hypothetical protein	chr1	16032064	16037872	+	CDS,promoter,downstream
28	LOC_Os03g62820	hypothetical protein	gene	hypothetical protein	chr3	35531884	35533016	+	CDS,promoter
28	LOC_Os09g09120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4876438	4879470	-	CDS,promoter,downstream
28	LOC_Os07g24420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13904794	13906616	-	CDS,promoter,downstream
28	LOC_Os11g45610	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	27126691	27131503	+	CDS,three_prime_UTR
28	LOC_Os08g41130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	25985496	25988207	+	CDS,promoter
28	LOC_Os04g56880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33719516	33720903	-	CDS,promoter,downstream
28	LOC_Os06g45030	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	27241826	27246641	-	three_prime_UTR,promoter
28	LOC_Os09g11220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6217761	6224987	-	CDS,downstream
28	LOC_Os07g32110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	19074501	19077547	-	CDS
28	LOC_Os09g08350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4318738	4321411	+	CDS,promoter
28	LOC_Os02g43390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26172135	26181051	-	CDS,promoter
28	LOC_Os05g17100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9761200	9767920	-	CDS,promoter,downstream
28	LOC_Os02g17670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10173442	10174404	+	CDS,promoter,downstream
28	LOC_Os02g28670	hypothetical protein	gene	hypothetical protein	chr2	16956356	16957998	+	CDS,promoter
28	LOC_Os08g07360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	4117580	4122762	-	CDS,promoter,downstream
28	LOC_Os01g20200	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	11485240	11488569	-	CDS,promoter
28	LOC_Os01g51735	expressed protein	gene	expressed protein	chr1	29749748	29750391	-	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os06g15310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8682143	8689046	-	CDS,promoter,downstream
28	LOC_Os04g14890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8368422	8376366	-	CDS,promoter
28	LOC_Os12g22470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12677469	12681434	+	CDS,promoter,downstream
28	LOC_Os07g34250	peptidase aspartic family protein, putative, expressed	gene	peptidase aspartic family protein, putative, expressed	chr7	20497990	20502169	-	CDS,promoter
28	LOC_Os12g20400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	11907351	11910719	-	CDS,promoter,downstream
28	LOC_Os05g30290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17494097	17496783	+	CDS,promoter
28	LOC_Os04g05800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2970832	2976989	+	CDS,promoter
28	LOC_Os02g51220	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	31333448	31336859	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os03g36180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20070772	20071966	+	CDS,promoter,downstream
28	LOC_Os08g13150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7808212	7814400	-	CDS
28	LOC_Os08g24530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14810918	14814664	-	CDS,promoter,downstream
28	LOC_Os06g43460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26114047	26120202	-	CDS
28	LOC_Os03g35610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19731677	19732769	-	CDS,promoter,downstream
28	LOC_Os06g31900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18530650	18533003	-	CDS,downstream
28	LOC_Os03g31890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	18241397	18244323	+	CDS,downstream
28	LOC_Os09g30494	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	18625362	18630489	+	CDS,promoter
28	LOC_Os05g20090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11741169	11749640	-	CDS,promoter,downstream
28	LOC_Os08g34670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	21775149	21778009	+	CDS,downstream
28	LOC_Os05g17200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	9848828	9851150	-	CDS,promoter,downstream
28	LOC_Os12g08500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4309820	4312490	+	CDS,promoter,downstream
28	LOC_Os04g18660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10322954	10326020	-	CDS,promoter
28	LOC_Os01g66930	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	38870335	38873451	-	three_prime_UTR,promoter
28	LOC_Os06g17370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10064914	10068955	-	CDS,promoter
28	LOC_Os07g35830	unknown	gene	unknown	chr7	21451198	21451747	-	CDS,promoter,downstream
28	LOC_Os08g11560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6770043	6771300	+	CDS,promoter
28	LOC_Os04g44960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26413594	26419749	+	CDS
28	LOC_Os07g04080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	1732192	1734984	-	CDS,promoter,downstream
28	LOC_Os03g13710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	7417022	7424574	-	CDS,downstream
28	LOC_Os06g19710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11254679	11258527	+	CDS,downstream
28	LOC_Os07g22810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	12866320	12867255	+	CDS,promoter,downstream
28	LOC_Os06g25750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15040783	15042089	+	CDS,promoter,downstream
28	LOC_Os01g02610	protein kinase domain containing protein	gene	protein kinase domain containing protein	chr1	869318	873817	-	CDS
28	LOC_Os02g28250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16704090	16707184	-	CDS,downstream
28	LOC_Os09g20610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12420501	12422187	-	CDS
28	LOC_Os08g32480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20103994	20106742	-	CDS,downstream
28	LOC_Os06g22630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	13155319	13156061	-	CDS,promoter,downstream
28	LOC_Os01g31020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16960244	16972708	+	CDS
28	LOC_Os05g34429	unknown	gene	unknown	chr5	20337659	20338091	-	CDS,downstream
28	LOC_Os02g05170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	2470500	2473035	+	CDS,promoter,downstream
28	LOC_Os04g06144	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3189066	3201684	-	CDS,promoter
28	LOC_Os02g27570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16318446	16323865	-	CDS,promoter
28	LOC_Os07g06355	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3090815	3093756	+	CDS,downstream
28	LOC_Os06g21740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12560467	12567386	-	CDS
28	LOC_Os03g52550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30138422	30141347	-	CDS,promoter
28	LOC_Os11g11380	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	6310874	6314604	-	CDS
28	LOC_Os12g18970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11007853	11009024	-	CDS,promoter,downstream
28	LOC_Os08g32800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20327341	20332823	+	CDS,downstream
28	LOC_Os05g50870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29114633	29116007	+	CDS,downstream
28	LOC_Os06g22180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12868288	12871551	+	CDS,promoter
28	LOC_Os12g43250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26812941	26814767	-	CDS,promoter,downstream
28	LOC_Os05g47710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	27269629	27274752	+	CDS,downstream
28	LOC_Os07g02510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	879424	883646	-	CDS,promoter,downstream
28	LOC_Os08g24280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14651444	14654272	+	CDS,promoter,downstream
28	LOC_Os09g01800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	551885	554493	-	CDS,promoter,downstream
28	LOC_Os12g36130	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	22116085	22117073	+	CDS,promoter,downstream
28	LOC_Os12g19680	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	11466091	11468302	-	five_prime_UTR,promoter,downstream
28	LOC_Os07g30890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	18285205	18288434	+	CDS
28	LOC_Os03g05950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2972311	2973398	+	CDS,promoter,downstream
28	LOC_Os03g43210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24093322	24096519	+	CDS,promoter,downstream
28	LOC_Os07g11990	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	6646242	6647633	-	CDS,downstream
28	LOC_Os06g25270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14779779	14782975	-	CDS,promoter
28	LOC_Os10g11480	hypothetical protein	gene	hypothetical protein	chr10	6377158	6377849	+	CDS,downstream
28	LOC_Os08g30670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18899245	18908883	+	CDS
28	LOC_Os04g09710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5198339	5201266	-	CDS,promoter,downstream
28	LOC_Os12g26580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15548602	15552973	-	CDS,promoter,downstream
28	LOC_Os08g25640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15597831	15602353	-	CDS,promoter
28	LOC_Os06g25520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14921637	14925142	+	CDS,promoter
28	LOC_Os11g29770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16807185	16808579	-	CDS,promoter,downstream
28	LOC_Os12g23730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	13460427	13464649	-	CDS,promoter,downstream
28	LOC_Os02g18730	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	10925193	10928745	+	CDS,downstream
28	LOC_Os08g38200	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed	gene	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed	chr8	24201728	24207786	-	five_prime_UTR,CDS,three_prime_UTR,promoter
28	LOC_Os04g21250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11970830	11974562	-	CDS,promoter,downstream
28	LOC_Os03g32890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18809862	18811694	-	CDS,promoter,downstream
28	LOC_Os07g29000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17010434	17013325	+	CDS,downstream
28	LOC_Os02g25180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14638828	14645653	+	CDS,promoter,downstream
28	LOC_Os04g07120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	3775979	3777052	-	CDS,promoter
28	LOC_Os03g37860	hypothetical protein	gene	hypothetical protein	chr3	21018459	21020423	-	CDS,downstream
28	LOC_Os02g06740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	3392271	3397700	+	CDS,downstream
28	LOC_Os05g18390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10610724	10611140	+	CDS,promoter,downstream
28	LOC_Os08g19190	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11472493	11474205	-	CDS,promoter,downstream
28	LOC_Os04g16530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8978507	8984919	-	CDS,promoter,downstream
28	LOC_Os02g15720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	8856564	8862454	+	CDS
28	LOC_Os09g10080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5491541	5494479	-	CDS,promoter,downstream
28	LOC_Os11g45690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	27162352	27168508	-	CDS,promoter
28	LOC_Os09g02980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	1397351	1398655	+	CDS,promoter,downstream
28	LOC_Os07g15860	hypothetical protein	gene	hypothetical protein	chr7	9214121	9215180	+	CDS,downstream
28	LOC_Os01g46110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	26212168	26217200	-	CDS,promoter
28	LOC_Os04g38129	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22508632	22511386	-	CDS,promoter,downstream
28	LOC_Os11g14340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8045005	8050018	+	CDS,downstream
28	LOC_Os09g03860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1951557	1957218	-	CDS,downstream
28	LOC_Os06g37030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	21846367	21852018	-	CDS
28	LOC_Os06g15939	ligA, putative	gene	ligA, putative	chr6	9064268	9066419	+	CDS,promoter
28	LOC_Os06g17820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10328408	10334563	-	CDS,downstream
28	LOC_Os03g46800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	26464868	26467219	-	CDS,promoter,downstream
28	LOC_Os12g06680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	3248860	3255073	-	CDS,downstream
28	LOC_Os04g06580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3458596	3459066	+	CDS,promoter,downstream
28	LOC_Os05g18260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10504649	10506530	-	CDS,promoter,downstream
28	LOC_Os05g23370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13285176	13295120	+	CDS,promoter,downstream
28	LOC_Os12g33500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20206419	20208226	+	CDS,promoter,downstream
28	LOC_Os08g35770	hypothetical protein	gene	hypothetical protein	chr8	22561300	22561611	+	CDS,downstream
28	LOC_Os07g22270	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr7	12481299	12485845	-	CDS,promoter,downstream
28	LOC_Os09g10550	hypothetical protein	gene	hypothetical protein	chr9	5758676	5760466	-	CDS,promoter
28	LOC_Os09g09430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5073754	5075376	-	CDS,downstream
28	LOC_Os10g40160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	21428786	21431711	-	CDS,promoter,downstream
28	LOC_Os12g33890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20400074	20402999	+	CDS,promoter,downstream
28	LOC_Os09g08240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4267223	4270181	-	CDS,promoter
28	LOC_Os08g10890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6415362	6422026	+	CDS,promoter,downstream
28	LOC_Os12g29700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17711461	17716647	+	CDS
28	LOC_Os02g32360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	19106054	19113843	+	CDS
28	LOC_Os06g29060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16563220	16565521	-	CDS,promoter
28	LOC_Os11g39790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23247825	23253949	-	CDS,promoter,downstream
28	LOC_Os01g48580	ubiquitin-conjugating enzyme E2, putative	gene	ubiquitin-conjugating enzyme E2, putative	chr1	27856904	27861087	+	CDS,downstream
28	LOC_Os07g26320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	15129115	15130816	+	CDS,downstream
28	LOC_Os10g07608	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4228975	4232091	-	CDS
28	LOC_Os04g12130	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6673330	6677230	-	CDS
28	LOC_Os02g25650	hypothetical protein	gene	hypothetical protein	chr2	14994734	14998249	-	CDS,downstream
28	LOC_Os05g07480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3998662	3999290	-	CDS,promoter,downstream
28	LOC_Os01g38450	hypothetical protein	gene	hypothetical protein	chr1	21608677	21610002	+	CDS,promoter,downstream
28	LOC_Os11g06250	hypothetical protein	gene	hypothetical protein	chr11	2984965	2985838	-	CDS,promoter
28	LOC_Os01g21510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12021537	12026264	-	CDS,promoter,downstream
28	LOC_Os03g12310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	6479424	6486514	+	CDS
28	LOC_Os10g04210	hypothetical protein	gene	hypothetical protein	chr10	1960747	1962867	+	CDS,downstream
28	LOC_Os06g29890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17213893	17216129	-	CDS,promoter,downstream
28	LOC_Os04g20620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11529129	11534785	+	CDS,downstream
28	LOC_Os03g59894	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34086200	34089537	+	CDS,promoter,downstream
28	LOC_Os04g38060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22465151	22467950	+	CDS,downstream
28	LOC_Os06g17920	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr6	10404660	10414296	+	CDS,downstream
28	LOC_Os05g18190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10452091	10452516	+	CDS,promoter,downstream
28	LOC_Os04g07230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3831667	3832888	+	CDS,promoter,downstream
28	LOC_Os09g11820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	6610010	6615959	-	CDS
28	LOC_Os11g31790	hypothetical protein	gene	hypothetical protein	chr11	18189770	18191896	+	CDS,promoter
28	LOC_Os11g08630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	4585475	4586054	-	CDS,promoter,downstream
28	LOC_Os04g53040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	31401481	31412679	+	CDS
28	LOC_Os02g20650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	12167600	12171826	+	CDS,promoter,downstream
28	LOC_Os01g32070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17550575	17552682	-	CDS,promoter,downstream
28	LOC_Os10g24550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12528989	12529778	+	CDS,promoter,downstream
28	LOC_Os09g22390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13526084	13527210	+	CDS,promoter
28	LOC_Os05g18370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10584530	10587052	-	CDS,downstream
28	LOC_Os12g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13704466	13708312	+	CDS,downstream
28	LOC_Os09g13070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7531372	7533451	-	CDS,promoter,downstream
28	LOC_Os07g09200	expressed protein	gene	expressed protein	chr7	4827911	4829019	+	three_prime_UTR,downstream
28	LOC_Os11g19270	hypothetical protein	gene	hypothetical protein	chr11	11040841	11041153	-	CDS,promoter
28	LOC_Os04g04710	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	2256159	2258969	-	CDS,promoter,downstream
28	LOC_Os10g10744	hypothetical protein	gene	hypothetical protein	chr10	5959567	5959968	-	CDS,promoter
28	LOC_Os11g08610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	4572750	4579634	-	CDS,downstream
28	LOC_Os07g27510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	16074440	16078247	+	CDS
28	LOC_Os02g14580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	8041112	8048125	+	CDS
28	LOC_Os02g24400	hypothetical protein	gene	hypothetical protein	chr2	14143743	14145052	+	CDS,promoter,downstream
28	LOC_Os11g26040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14431436	14435263	+	CDS,downstream
28	LOC_Os05g51280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29351620	29354736	-	CDS,downstream
28	LOC_Os11g12140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6763995	6765300	-	CDS,promoter,downstream
28	LOC_Os08g40320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25525528	25528318	-	CDS,promoter
28	LOC_Os01g34490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19015307	19019506	-	CDS,downstream
28	LOC_Os11g26320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14601918	14605148	-	CDS,promoter,downstream
28	LOC_Os07g22240	hypothetical protein	gene	hypothetical protein	chr7	12452198	12453855	-	CDS,promoter,downstream
28	LOC_Os04g27790	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr4	16247999	16252939	+	CDS
28	LOC_Os12g35170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21357803	21359748	-	CDS,promoter,downstream
28	LOC_Os12g08490	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	4303876	4307854	+	CDS,downstream
28	LOC_Os05g26040	pumilio-family RNA binding repeat containing protein, expressed	gene	pumilio-family RNA binding repeat containing protein, expressed	chr5	15078830	15090045	+	CDS
28	LOC_Os08g35390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22306467	22312274	-	CDS
28	LOC_Os05g27200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15760233	15764008	-	CDS,promoter,downstream
28	LOC_Os02g24050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13931004	13932354	-	CDS,promoter,downstream
28	LOC_Os09g15120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9175901	9178868	+	CDS,downstream
28	LOC_Os05g18210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10475699	10477096	+	CDS,promoter,downstream
28	LOC_Os02g12970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	6861021	6865151	-	CDS,downstream
28	LOC_Os06g50733	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	30694832	30695432	-	CDS,promoter
28	LOC_Os08g05060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	2596088	2601611	-	CDS,promoter,downstream
28	LOC_Os05g31350	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	18162790	18164201	-	CDS,promoter,downstream
28	LOC_Os10g01770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	499340	506183	-	CDS,promoter,downstream
28	LOC_Os06g48470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29321136	29327225	-	CDS,promoter,downstream
28	LOC_Os08g25000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	15159539	15160159	-	CDS,promoter
28	LOC_Os06g26130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15288366	15291158	+	CDS,promoter
28	LOC_Os01g35490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19638785	19640174	-	CDS,promoter,downstream
28	LOC_Os03g38530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	21383693	21388334	+	CDS,promoter
28	LOC_Os09g18220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11164051	11167208	+	CDS,promoter
28	LOC_Os11g18270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10289942	10291306	-	CDS,promoter,downstream
28	LOC_Os10g05380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2648860	2653402	-	CDS,promoter,downstream
28	LOC_Os05g14060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7855924	7858685	+	CDS,promoter
28	LOC_Os08g12479	unknown	gene	unknown	chr8	7380869	7382131	+	CDS,downstream
28	LOC_Os12g29850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17817886	17823808	+	CDS,downstream
28	LOC_Os02g49110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30026085	30027236	-	CDS,promoter,downstream
28	LOC_Os09g04280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	2274989	2278117	-	CDS,promoter,downstream
28	LOC_Os06g16530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9484777	9485259	+	CDS,promoter,downstream
28	LOC_Os05g23690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13542099	13543540	-	CDS
28	LOC_Os04g43870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25796361	25801697	-	CDS,promoter
28	LOC_Os06g26320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15408152	15409670	-	CDS,promoter,downstream
28	LOC_Os06g35840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	20909428	20913730	-	CDS
28	LOC_Os01g31520	hypothetical protein	gene	hypothetical protein	chr1	17239177	17239445	+	CDS,promoter,downstream
28	LOC_Os02g56290	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	34447368	34451852	+	CDS
28	LOC_Os06g31160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18101446	18105488	+	CDS,promoter,downstream
28	LOC_Os02g24890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14425304	14429616	+	CDS,downstream
28	LOC_Os02g07570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	3916725	3922880	-	CDS
28	LOC_Os07g24290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13809495	13811243	-	CDS,promoter,downstream
28	LOC_Os04g18244	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10075698	10085612	-	CDS,promoter,downstream
28	LOC_Os07g18170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10768591	10772101	-	CDS,downstream
28	LOC_Os10g20410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10192178	10195343	-	CDS,downstream
28	LOC_Os07g11540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6349478	6352312	-	CDS
28	LOC_Os09g07980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4099944	4104937	-	CDS,promoter
28	LOC_Os01g15700	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	8828544	8833069	+	CDS
28	LOC_Os02g34180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	20435190	20441348	-	CDS
28	LOC_Os08g40350	expressed protein	gene	expressed protein	chr8	25541380	25546076	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g17030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9323163	9324095	-	CDS,promoter,downstream
28	LOC_Os07g03720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	1516533	1520755	+	CDS,promoter
28	LOC_Os05g12780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	7332091	7335075	-	CDS,downstream
28	LOC_Os04g21180	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11912367	11916239	-	CDS,promoter
28	LOC_Os10g42999	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	23097925	23104202	+	CDS,downstream
28	LOC_Os03g37742	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	20926036	20927214	-	CDS,downstream
28	LOC_Os10g31220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	16300321	16304620	+	CDS,downstream
28	LOC_Os08g24480	HAT family dimerisation domain containing protein, identical, putative	gene	HAT family dimerisation domain containing protein, identical, putative	chr8	14784245	14786683	-	CDS,downstream
28	LOC_Os11g35570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20391935	20393172	-	CDS,promoter,downstream
28	LOC_Os07g41480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	24852307	24856138	-	CDS
28	LOC_Os11g27780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15523872	15525111	-	CDS,promoter,downstream
28	LOC_Os04g54530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32250871	32252443	+	CDS
28	LOC_Os09g09080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4852608	4855383	-	CDS,promoter,downstream
28	LOC_Os10g02790	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr10	1113833	1115593	+	CDS,downstream
28	LOC_Os01g02629	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	883161	886787	-	CDS,promoter,downstream
28	LOC_Os06g38820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	23043215	23047155	+	CDS,downstream
28	LOC_Os12g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10641530	10647056	-	CDS,promoter,downstream
28	LOC_Os03g25890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14805303	14809345	+	CDS,promoter
28	LOC_Os04g18510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10221917	10222318	-	CDS,promoter
28	LOC_Os07g20460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11811800	11819651	-	CDS,promoter,downstream
28	LOC_Os12g29640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17670317	17673638	-	CDS,promoter
28	LOC_Os06g22370	hypothetical protein	gene	hypothetical protein	chr6	12987185	12989509	+	CDS
28	LOC_Os12g20370	hypothetical protein	gene	hypothetical protein	chr12	11889952	11892524	-	CDS,promoter,downstream
28	LOC_Os02g15570	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	8741014	8742325	-	CDS,promoter
28	LOC_Os06g28030	hypothetical protein	gene	hypothetical protein	chr6	15905024	15906173	-	CDS,promoter,downstream
28	LOC_Os09g06880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3296737	3300226	-	CDS,promoter,downstream
28	LOC_Os11g45000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26773942	26776809	-	CDS,downstream
28	LOC_Os06g19330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10989198	10992085	-	CDS,promoter
28	LOC_Os08g23090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13905372	13907128	-	CDS,promoter
28	LOC_Os08g26900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16401531	16407430	+	CDS,downstream
28	LOC_Os10g08002	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4317013	4321807	-	CDS,downstream
28	LOC_Os11g19000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10830941	10831558	+	CDS,promoter,downstream
28	LOC_Os10g20920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10521846	10524380	+	CDS,promoter,downstream
28	LOC_Os06g42360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25457243	25457692	+	CDS,promoter,downstream
28	LOC_Os07g47020	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	28092034	28094960	-	CDS,promoter,downstream
28	LOC_Os01g35290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	19534405	19538112	+	CDS,promoter
28	LOC_Os01g60480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34970039	34974519	+	CDS,downstream
28	LOC_Os01g03800	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr1	1592624	1595159	+	CDS,promoter
28	LOC_Os04g04510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2153833	2156781	-	CDS
28	LOC_Os11g28590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16020221	16020948	-	CDS,promoter
28	LOC_Os07g32740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	19560051	19562113	+	CDS,downstream
28	LOC_Os07g05970	ligA, putative	gene	ligA, putative	chr7	2894355	2895129	-	CDS,promoter,downstream
28	LOC_Os08g12370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7284733	7289283	-	CDS,promoter,downstream
28	LOC_Os07g22430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12605763	12612590	-	CDS,promoter,downstream
28	LOC_Os01g31880	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17466856	17467455	-	CDS,promoter,downstream
28	LOC_Os03g23060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	13326971	13330822	+	CDS,downstream
28	LOC_Os02g21590	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	12820861	12827682	+	CDS,promoter,downstream
28	LOC_Os02g53930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	33009988	33012249	-	CDS,downstream
28	LOC_Os02g21420	hypothetical protein	gene	hypothetical protein	chr2	12717115	12717819	+	CDS,downstream
28	LOC_Os03g58660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	33402144	33409719	+	CDS,promoter
28	LOC_Os12g29940	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	17863508	17865991	+	CDS,promoter
28	LOC_Os02g37840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22836926	22839072	+	CDS,promoter
28	LOC_Os06g24080	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	14092462	14093030	+	CDS,promoter,downstream
28	LOC_Os09g02110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	787457	791800	+	CDS,downstream
28	LOC_Os06g27520	hypothetical protein	gene	hypothetical protein	chr6	15583221	15584729	+	CDS,promoter,downstream
28	LOC_Os12g27700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16330720	16333695	+	CDS,promoter,downstream
28	LOC_Os12g16880	PROLM27 - Prolamin precursor, expressed	gene	PROLM27 - Prolamin precursor, expressed	chr12	9684324	9685019	+	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os04g04120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	1892286	1899326	-	CDS,promoter,downstream
28	LOC_Os03g33950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19371798	19374360	+	CDS,promoter,downstream
28	LOC_Os05g24400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14045190	14046967	-	CDS,promoter,downstream
28	LOC_Os03g33980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19388332	19390907	+	CDS,promoter,downstream
28	LOC_Os09g03360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1629869	1631312	+	CDS,promoter,downstream
28	LOC_Os04g19430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10816716	10821488	+	CDS,promoter
28	LOC_Os11g35250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20197042	20197650	+	CDS,promoter,downstream
28	LOC_Os04g21750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12296619	12302551	+	CDS,promoter,downstream
28	LOC_Os05g48720	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr5	27861504	27864216	-	CDS,promoter
28	LOC_Os11g12700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7163990	7167256	-	CDS,promoter,downstream
28	LOC_Os11g46180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27498154	27498519	-	CDS,promoter,downstream
28	LOC_Os09g38950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22361130	22366210	+	CDS,promoter
28	LOC_Os11g28690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16124282	16127221	+	CDS,promoter,downstream
28	LOC_Os10g08810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4783414	4784566	+	CDS,promoter
28	LOC_Os04g29440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17331484	17336046	-	CDS,promoter
28	LOC_Os07g03940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	1657046	1661268	+	CDS,downstream
28	LOC_Os07g43604	hypothetical protein	gene	hypothetical protein	chr7	26101437	26103697	-	three_prime_UTR,downstream
28	LOC_Os11g14610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8220588	8229052	+	CDS,promoter,downstream
28	LOC_Os04g39530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	23350279	23352347	-	CDS,downstream
28	LOC_Os04g24970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14379223	14383365	+	CDS,promoter,downstream
28	LOC_Os01g54830	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	31532296	31539010	-	CDS,promoter,downstream
28	LOC_Os10g33740	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr10	17749235	17753871	-	CDS,downstream
28	LOC_Os12g22050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12406492	12411346	+	CDS,promoter
28	LOC_Os05g17250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9867525	9870229	+	CDS,promoter,downstream
28	LOC_Os10g13410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7258785	7261470	+	CDS,downstream
28	LOC_Os08g23610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	14288071	14290902	+	CDS,promoter,downstream
28	LOC_Os10g27260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14304819	14320802	-	CDS,promoter
28	LOC_Os04g22690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12848918	12857563	-	CDS,promoter,downstream
28	LOC_Os10g33570	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	17630001	17634196	+	CDS,promoter
28	LOC_Os11g41690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24563690	24567175	+	CDS,promoter,downstream
28	LOC_Os08g44890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28186710	28191443	-	CDS,promoter
28	LOC_Os08g30160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18543733	18544252	+	CDS,promoter,downstream
28	LOC_Os12g33380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20155037	20157470	-	CDS,promoter
28	LOC_Os08g17010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10420313	10423589	+	CDS,promoter,downstream
28	LOC_Os10g01780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	508602	509610	-	CDS,promoter,downstream
28	LOC_Os01g19100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	10788085	10792497	+	CDS,promoter,downstream
28	LOC_Os07g41530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24893103	24896214	+	CDS,promoter
28	LOC_Os01g02280	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr1	706340	713322	+	CDS
28	LOC_Os03g19750	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	11097798	11099871	+	CDS
28	LOC_Os12g04950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	2136931	2138890	-	CDS,downstream
28	LOC_Os08g24500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14793642	14795414	-	CDS,promoter,downstream
28	LOC_Os10g18610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9367756	9370040	-	CDS,promoter,downstream
28	LOC_Os08g07570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4253524	4255334	-	CDS,promoter,downstream
28	LOC_Os10g24470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12489285	12491288	-	CDS,promoter,downstream
28	LOC_Os12g35400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21495264	21499408	-	CDS,downstream
28	LOC_Os03g32210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18425095	18426944	-	CDS,promoter
28	LOC_Os01g33460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18424399	18429721	+	CDS
28	LOC_Os07g26120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	14998426	15004473	+	CDS
28	LOC_Os07g24480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13941503	13944525	+	CDS,promoter,downstream
28	LOC_Os06g37140	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	21935888	21942008	-	CDS
28	LOC_Os12g12040	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6595058	6597584	-	CDS,promoter,downstream
28	LOC_Os09g03300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1585681	1599315	+	CDS,promoter,downstream
28	LOC_Os04g08680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4707816	4709852	-	CDS,promoter,downstream
28	LOC_Os06g27840	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	15768343	15775360	-	CDS,promoter
28	LOC_Os06g37999	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22468699	22469523	-	CDS,promoter,downstream
28	LOC_Os11g22580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12522917	12531017	+	CDS
28	LOC_Os10g42900	peptide transporter PTR2, putative, expressed	gene	peptide transporter PTR2, putative, expressed	chr10	23057470	23060637	+	three_prime_UTR,downstream
28	LOC_Os04g03340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1426720	1428944	+	CDS
28	LOC_Os10g13980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7616567	7622662	+	CDS,promoter,downstream
28	LOC_Os05g02080	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	612964	619232	+	CDS,downstream
28	LOC_Os05g26450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15320631	15323028	-	CDS,promoter,downstream
28	LOC_Os08g05330	hypothetical protein	gene	hypothetical protein	chr8	2799882	2800136	-	CDS,promoter,downstream
28	LOC_Os11g02980	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	1038154	1039779	+	CDS,downstream
28	LOC_Os05g48550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	27754850	27758393	-	CDS,promoter
28	LOC_Os02g14100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7695473	7700292	-	CDS,promoter
28	LOC_Os10g22760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	11758542	11759946	+	CDS,downstream
28	LOC_Os04g54700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32323475	32329617	-	CDS,downstream
28	LOC_Os04g18140	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr4	10019347	10021324	+	CDS,promoter
28	LOC_Os08g25300	hypothetical protein	gene	hypothetical protein	chr8	15379696	15381183	+	CDS,downstream
28	LOC_Os06g19040	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	10825032	10829372	+	CDS,downstream
28	LOC_Os07g36360	OsFBO19 - F-box and other domain containing protein, expressed	gene	OsFBO19 - F-box and other domain containing protein, expressed	chr7	21738679	21742527	-	CDS,promoter
28	LOC_Os08g30270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	18616822	18619764	-	CDS
28	LOC_Os07g28370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16572412	16580592	+	CDS,promoter,downstream
28	LOC_Os05g47720	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	27277387	27280100	+	CDS,promoter
28	LOC_Os07g35820	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	21447094	21447450	-	CDS,promoter,downstream
28	LOC_Os05g17440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	10013098	10013322	+	CDS,promoter,downstream
28	LOC_Os03g43540	hypothetical protein	gene	hypothetical protein	chr3	24307018	24311620	-	CDS,downstream
28	LOC_Os01g42570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	24202612	24203359	-	CDS,promoter,downstream
28	LOC_Os10g09800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5316782	5318724	+	CDS,promoter,downstream
28	LOC_Os06g25680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	15005066	15007362	-	CDS,downstream
28	LOC_Os06g16850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9755316	9758917	-	CDS,promoter,downstream
28	LOC_Os03g21310	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	gene	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	chr3	12189283	12197854	+	CDS,downstream
28	LOC_Os04g10840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5875849	5878773	+	CDS,promoter,downstream
28	LOC_Os03g39356	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21873359	21876031	-	CDS,promoter,downstream
28	LOC_Os05g17110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9771589	9776785	+	CDS,promoter
28	LOC_Os05g03370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	1385074	1388650	+	CDS
28	LOC_Os12g05700	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr12	2628448	2631699	+	CDS,downstream
28	LOC_Os08g19740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	11815542	11816466	-	CDS,promoter,downstream
28	LOC_Os08g30990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19127357	19134918	+	CDS,downstream
28	LOC_Os01g31510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17231694	17235678	-	CDS,promoter,downstream
28	LOC_Os04g04940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2375060	2379760	-	CDS,promoter,downstream
28	LOC_Os11g17700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9870550	9879195	-	CDS,promoter,downstream
28	LOC_Os07g18790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11118662	11122149	+	CDS,promoter,downstream
28	LOC_Os09g01910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	609374	612420	-	CDS,promoter
28	LOC_Os09g40014	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22958069	22961703	+	CDS,promoter,downstream
28	LOC_Os07g28630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16756295	16759600	-	CDS,promoter
28	LOC_Os09g02100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	774719	778050	-	CDS,promoter
28	LOC_Os03g49120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	27969057	27975017	+	CDS
28	LOC_Os06g28540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16240812	16242447	-	CDS,downstream
28	LOC_Os08g29690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18225896	18231178	-	CDS,promoter,downstream
28	LOC_Os09g20380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	12239307	12242725	-	CDS
28	LOC_Os02g08450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	4549904	4552374	-	CDS
28	LOC_Os04g09930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5334203	5338522	+	CDS
28	LOC_Os12g33360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20143588	20148961	+	CDS
28	LOC_Os12g25080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14403113	14406579	+	CDS
28	LOC_Os04g27270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	15941310	15944896	-	CDS,promoter,downstream
28	LOC_Os06g10740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	5607405	5610438	+	CDS
28	LOC_Os11g02890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	985513	990125	+	CDS,promoter,downstream
28	LOC_Os04g31650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	18788706	18791971	-	CDS
28	LOC_Os08g11740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6885256	6886365	+	CDS,promoter
28	LOC_Os04g34880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21006308	21007468	+	CDS
28	LOC_Os08g16990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	10402234	10406295	+	CDS,promoter,downstream
28	LOC_Os06g34290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19951463	19953431	-	CDS,downstream
28	LOC_Os08g27410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16726527	16730021	+	CDS,promoter
28	LOC_Os06g37850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22404668	22406765	-	CDS,promoter,downstream
28	LOC_Os04g25540	ribosomal protein L27, putative, expressed	gene	ribosomal protein L27, putative, expressed	chr4	14795417	14796438	+	CDS,promoter
28	LOC_Os11g45010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26776993	26778747	-	CDS,promoter
28	LOC_Os06g32050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18629533	18636202	-	CDS,promoter
28	LOC_Os02g04910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2266955	2273441	-	CDS
28	LOC_Os03g12490	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	6601163	6605281	-	CDS,promoter
28	LOC_Os04g08776	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4778007	4779269	+	CDS,promoter,downstream
28	LOC_Os04g19290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10722030	10726831	+	CDS,promoter
28	LOC_Os04g43590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25608017	25613290	-	CDS,downstream
28	LOC_Os07g06040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	2928530	2931622	-	CDS,promoter
28	LOC_Os03g53130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	30461521	30467474	-	CDS,promoter
28	LOC_Os12g25550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14783018	14787008	-	CDS,promoter,downstream
28	LOC_Os01g32044	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17538774	17541231	+	CDS,promoter
28	LOC_Os08g28050	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	17094140	17094737	-	CDS,promoter
28	LOC_Os12g33110	hypothetical protein	gene	hypothetical protein	chr12	20011516	20012263	-	CDS,promoter
28	LOC_Os11g45240	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr11	26902172	26910126	-	CDS
28	LOC_Os06g22510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13078439	13081872	+	CDS,downstream
28	LOC_Os04g20310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11349496	11351598	+	CDS,promoter,downstream
28	LOC_Os05g35100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	20777291	20780643	-	CDS,promoter,downstream
28	LOC_Os12g19140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11106360	11110460	-	CDS,downstream
28	LOC_Os06g27740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15708167	15714161	+	CDS,promoter,downstream
28	LOC_Os06g48490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	29333887	29336235	+	CDS,promoter,downstream
28	LOC_Os12g40250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	24874566	24877838	-	CDS,promoter,downstream
28	LOC_Os04g06320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	3301811	3303664	-	CDS,promoter,downstream
28	LOC_Os11g20220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11670991	11674448	+	CDS,downstream
28	LOC_Os10g35890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19112153	19116580	-	CDS
28	LOC_Os08g06990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	3891921	3899665	+	CDS,promoter,downstream
28	LOC_Os04g28730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	16848896	16849183	-	CDS,promoter,downstream
28	LOC_Os03g58730	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr3	33440737	33443900	-	CDS,three_prime_UTR,promoter
28	LOC_Os12g12840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7077310	7080597	-	CDS
28	LOC_Os01g46100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	26206929	26210615	-	CDS,downstream
28	LOC_Os04g45760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26899913	26901415	+	CDS,downstream
28	LOC_Os04g05330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2644716	2650241	-	CDS,promoter,downstream
28	LOC_Os05g03090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	1214161	1221962	-	CDS,promoter,downstream
28	LOC_Os07g22280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12486460	12490558	-	CDS,promoter,downstream
28	LOC_Os01g02270	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	699533	704670	-	CDS,promoter
28	LOC_Os10g10380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5720635	5726497	+	CDS,promoter,downstream
28	LOC_Os01g06760	verticillium wilt disease resistance protein Ve2, putative	gene	verticillium wilt disease resistance protein Ve2, putative	chr1	3200223	3203252	+	CDS,downstream
28	LOC_Os02g18060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10480997	10482329	+	CDS,promoter,downstream
28	LOC_Os09g22320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13482895	13489070	-	CDS
28	LOC_Os09g21940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13281343	13283825	+	CDS,promoter,downstream
28	LOC_Os09g08940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4752271	4756768	-	CDS,promoter
28	LOC_Os03g46080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	26055764	26060404	-	CDS,downstream
28	LOC_Os12g25530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14777267	14780349	-	CDS,promoter,downstream
28	LOC_Os01g22200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12482055	12484513	+	CDS,promoter
28	LOC_Os06g34140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19884352	19891327	+	CDS
28	LOC_Os03g35700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19772144	19773361	+	CDS,promoter,downstream
28	LOC_Os10g17380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8688140	8689210	-	CDS,promoter,downstream
28	LOC_Os08g36120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22758413	22759697	+	CDS
28	LOC_Os05g26270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15224320	15226894	-	CDS,promoter,downstream
28	LOC_Os12g24930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14316298	14318104	+	CDS,promoter,downstream
28	LOC_Os03g01950	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr3	591297	597042	-	CDS,promoter
28	LOC_Os04g20090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11180481	11183460	-	CDS,promoter,downstream
28	LOC_Os12g17050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9751892	9753206	-	CDS,promoter,downstream
28	LOC_Os07g41670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	24969683	24971857	-	CDS,downstream
28	LOC_Os06g22480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13063019	13066085	+	CDS,promoter,downstream
28	LOC_Os12g18440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10662049	10662468	+	CDS,promoter,downstream
28	LOC_Os04g34070	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	20458075	20462297	-	CDS
28	LOC_Os02g34350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	20543527	20548844	-	CDS,promoter
28	LOC_Os05g19610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	11421539	11426298	-	CDS,downstream
28	LOC_Os07g24590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13990392	13996196	-	CDS,promoter,downstream
28	LOC_Os11g20650	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr11	11963279	11964723	+	CDS,promoter,downstream
28	LOC_Os09g09420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	5056137	5064493	+	CDS
28	LOC_Os08g05130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2652083	2655026	-	CDS,promoter,downstream
28	LOC_Os09g07720	hypothetical protein	gene	hypothetical protein	chr9	3894347	3894769	-	CDS,promoter
28	LOC_Os03g41400	EBNA-1, putative	gene	EBNA-1, putative	chr3	23043880	23045430	+	CDS,promoter
28	LOC_Os05g35180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	20823789	20829002	+	CDS
28	LOC_Os03g43070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24026436	24029274	+	CDS,downstream
28	LOC_Os02g56730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34769347	34772576	+	CDS,downstream
28	LOC_Os01g40900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23131420	23134193	-	CDS,promoter,downstream
28	LOC_Os12g35960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21947961	21948917	-	CDS,downstream
28	LOC_Os12g07240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	3562173	3562925	-	CDS
28	LOC_Os04g05460	hypothetical protein	gene	hypothetical protein	chr4	2742751	2746591	-	CDS
28	LOC_Os01g14200	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	7952423	7963300	+	CDS,promoter
28	LOC_Os04g23240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13248312	13253162	+	CDS,downstream
28	LOC_Os01g35504	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19644154	19649919	-	CDS,promoter,downstream
28	LOC_Os01g38400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21569164	21570078	+	CDS,promoter,downstream
28	LOC_Os06g14730	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	8297393	8299635	+	CDS
28	LOC_Os09g09660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5201340	5204432	+	CDS,promoter,downstream
28	LOC_Os10g17724	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8886436	8892895	+	CDS,promoter,downstream
28	LOC_Os10g24510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12509399	12513913	-	CDS,promoter
28	LOC_Os06g28870	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16460788	16461818	+	CDS,promoter,downstream
28	LOC_Os01g35480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19627399	19633494	-	CDS,promoter,downstream
28	LOC_Os05g24520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14089945	14094554	+	CDS,downstream
28	LOC_Os02g40920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	24789250	24792587	+	CDS,promoter,downstream
28	LOC_Os04g11690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6408379	6410172	-	CDS,promoter,downstream
28	LOC_Os04g58150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	34447166	34453215	+	CDS,downstream
28	LOC_Os07g09220	IPP transferase, putative, expressed	gene	IPP transferase, putative, expressed	chr7	4832926	4833810	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os08g26380	hypothetical protein	gene	hypothetical protein	chr8	16076043	16076498	+	CDS,promoter,downstream
28	LOC_Os12g28320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	16743089	16747037	-	CDS,promoter,downstream
28	LOC_Os01g59220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34206904	34214134	+	CDS,promoter,downstream
28	LOC_Os06g25770	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	15051431	15056560	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os07g11350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6248097	6251426	-	CDS
28	LOC_Os08g28930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17684462	17690944	+	CDS,promoter,downstream
28	LOC_Os11g18290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10294759	10301160	-	CDS,promoter
28	LOC_Os03g49040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27930068	27933648	+	CDS,promoter
28	LOC_Os03g41926	unknown	gene	unknown	chr3	23287447	23288140	-	CDS,promoter,downstream
28	LOC_Os05g16720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9504850	9511568	-	CDS,promoter,downstream
28	LOC_Os07g24820	thionin-like peptide, putative	gene	thionin-like peptide, putative	chr7	14105662	14106228	+	CDS,promoter,downstream
28	LOC_Os12g42720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26509863	26515155	-	CDS,promoter
28	LOC_Os03g26560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15167048	15169909	+	CDS,promoter,downstream
28	LOC_Os03g56560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	32213263	32216191	+	CDS,promoter,downstream
28	LOC_Os01g39200	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	22052584	22057456	+	CDS,promoter,downstream
28	LOC_Os10g13390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7245529	7248453	+	CDS,promoter,downstream
28	LOC_Os04g23280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13279407	13282966	-	CDS,downstream
28	LOC_Os11g09520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5099589	5101256	-	CDS,downstream
28	LOC_Os07g17990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10649092	10649835	-	CDS,promoter
28	LOC_Os08g14540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8741684	8744139	+	CDS,promoter,downstream
28	LOC_Os05g20380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11949684	11950969	+	CDS,downstream
28	LOC_Os10g31350	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr10	16374014	16377021	+	CDS,downstream
28	LOC_Os11g17840	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr11	9982534	9985629	+	CDS,downstream
28	LOC_Os07g34210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20463964	20467296	-	CDS,promoter
28	LOC_Os10g07574	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	4116799	4127390	-	CDS
28	LOC_Os10g37610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20054889	20057648	+	CDS
28	LOC_Os02g27640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16371367	16374250	-	CDS,promoter
28	LOC_Os09g24390	zinc knuckle family protein	gene	zinc knuckle family protein	chr9	14494773	14499151	+	CDS,promoter,downstream
28	LOC_Os02g32220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19028471	19029896	-	CDS,promoter
28	LOC_Os06g15850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8998301	9003291	+	CDS,promoter,downstream
28	LOC_Os03g39210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21773841	21777910	-	CDS,promoter,downstream
28	LOC_Os12g13330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7434390	7436724	+	CDS,promoter
28	LOC_Os07g10670	hypothetical protein	gene	hypothetical protein	chr7	5794385	5795008	-	CDS,promoter,downstream
28	LOC_Os07g49340	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr7	29551918	29554650	+	CDS,promoter,downstream
28	LOC_Os07g24410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13898378	13899657	+	CDS,promoter,downstream
28	LOC_Os12g42940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	26647548	26649730	+	CDS
28	LOC_Os02g25250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14695953	14698849	+	CDS,promoter,downstream
28	LOC_Os11g33454	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19336169	19337404	-	CDS,downstream
28	LOC_Os09g06270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2942022	2945045	-	CDS,promoter,downstream
28	LOC_Os02g05100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2433691	2435973	+	CDS,promoter,downstream
28	LOC_Os09g07600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3807109	3811110	+	CDS
28	LOC_Os04g06630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3487240	3491434	+	CDS,promoter,downstream
28	LOC_Os09g24038	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14301055	14301843	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os06g24120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14111613	14112140	-	CDS,downstream
28	LOC_Os07g11640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6426046	6430634	-	CDS,promoter
28	LOC_Os05g09230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5157467	5160825	-	CDS,promoter
28	LOC_Os05g20579	unknown	gene	unknown	chr5	12074199	12074618	-	CDS,promoter,downstream
28	LOC_Os07g18450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10911641	10915198	+	CDS,promoter
28	LOC_Os08g32730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20267009	20270793	+	CDS,downstream
28	LOC_Os01g24390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13746314	13747611	-	CDS,promoter,downstream
28	LOC_Os01g01560	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	283911	291118	-	five_prime_UTR,CDS,promoter
28	LOC_Os12g10610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5656694	5658431	-	CDS,downstream
28	LOC_Os06g42530	hypothetical protein	gene	hypothetical protein	chr6	25578746	25580894	-	CDS,promoter
28	LOC_Os07g45020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26861598	26867690	+	CDS,promoter,downstream
28	LOC_Os01g27920	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	15608510	15608953	+	CDS,promoter,downstream
28	LOC_Os01g36700	hypothetical protein	gene	hypothetical protein	chr1	20376748	20377505	+	CDS,promoter,downstream
28	LOC_Os03g36140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20047750	20049377	-	CDS,promoter,downstream
28	LOC_Os08g04880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2488861	2491944	-	CDS,promoter
28	LOC_Os09g13350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7705313	7708603	+	CDS,downstream
28	LOC_Os09g17450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10665321	10671026	+	CDS,promoter,downstream
28	LOC_Os05g23160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13157183	13157811	-	CDS,promoter,downstream
28	LOC_Os12g25990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15087992	15092943	+	CDS,promoter,downstream
28	LOC_Os08g20922	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12530378	12534427	-	CDS,promoter,downstream
28	LOC_Os11g31760	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr11	18162464	18169290	-	CDS
28	LOC_Os01g13820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	7748404	7753414	-	CDS
28	LOC_Os09g16930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	10352825	10356205	-	CDS,promoter,downstream
28	LOC_Os04g01370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	271681	276473	+	CDS,promoter,downstream
28	LOC_Os01g18480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10388361	10395260	+	CDS,downstream
28	LOC_Os03g39598	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	21989097	21992472	-	CDS,promoter
28	LOC_Os01g31380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17165509	17166345	-	CDS,promoter,downstream
28	LOC_Os12g20070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11670435	11671562	+	CDS,promoter,downstream
28	LOC_Os10g10140	hypothetical protein	gene	hypothetical protein	chr10	5575142	5580434	+	CDS,downstream
28	LOC_Os04g29890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17647393	17651579	+	CDS,downstream
28	LOC_Os08g25330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	15405097	15409671	-	CDS,promoter,downstream
28	LOC_Os05g17370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9964847	9968123	-	CDS
28	LOC_Os04g27900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16306421	16306903	+	CDS,promoter,downstream
28	LOC_Os05g03230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1306905	1308243	+	CDS
28	LOC_Os05g28600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16682094	16684518	+	CDS,promoter,downstream
28	LOC_Os06g35100	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	20426189	20427164	+	CDS,promoter,downstream
28	LOC_Os09g03590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1768286	1772977	-	CDS,promoter
28	LOC_Os03g45519	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25684179	25691725	-	CDS,promoter
28	LOC_Os10g14980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7856855	7858824	-	CDS,promoter,downstream
28	LOC_Os08g25580	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15558728	15563611	+	CDS,downstream
28	LOC_Os01g21690	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	12165707	12169389	+	CDS,downstream
28	LOC_Os09g14200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8393992	8396436	+	CDS,promoter
28	LOC_Os04g09760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5227273	5233896	-	CDS,promoter
28	LOC_Os11g46090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	27431302	27435246	-	CDS
28	LOC_Os11g35680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20446601	20454039	+	CDS,downstream
28	LOC_Os11g29550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16679020	16680775	+	CDS,downstream
28	LOC_Os04g16220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8800773	8801921	-	CDS,promoter,downstream
28	LOC_Os03g44280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	24885172	24887726	+	CDS,downstream
28	LOC_Os06g25350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14849246	14852102	-	CDS,promoter,downstream
28	LOC_Os02g07620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	3941189	3944282	+	CDS,promoter,downstream
28	LOC_Os06g20580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11845713	11848925	+	CDS,promoter,downstream
28	LOC_Os08g35820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22585711	22589075	+	CDS,downstream
28	LOC_Os07g29870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17577864	17579568	-	CDS,promoter,downstream
28	LOC_Os06g27400	hypothetical protein	gene	hypothetical protein	chr6	15510722	15512216	-	CDS,promoter,downstream
28	LOC_Os12g23640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13417496	13420422	+	CDS,promoter,downstream
28	LOC_Os09g01010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	54381	55496	-	CDS,promoter,downstream
28	LOC_Os11g30070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17029218	17032550	+	CDS,downstream
28	LOC_Os05g20129	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11772111	11781743	-	CDS,promoter,downstream
28	LOC_Os10g26230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13516585	13517892	-	CDS,promoter
28	LOC_Os12g14010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7959511	7960810	+	CDS,promoter,downstream
28	LOC_Os04g14490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8097858	8101342	+	CDS,downstream
28	LOC_Os12g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12593768	12596161	-	CDS,promoter,downstream
28	LOC_Os04g47750	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr4	28145352	28145826	+	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os11g37710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21823865	21828664	+	CDS
28	LOC_Os07g27690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16152199	16158330	+	CDS,downstream
28	LOC_Os04g07808	hypothetical protein	gene	hypothetical protein	chr4	4160965	4161957	-	CDS,promoter
28	LOC_Os07g38780	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr7	23269251	23270542	-	CDS,promoter
28	LOC_Os03g38850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21571483	21579075	+	CDS,downstream
28	LOC_Os10g40806	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	21867292	21868806	-	CDS,promoter,downstream
28	LOC_Os01g37240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20796492	20799590	-	CDS,promoter
28	LOC_Os08g33360	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr8	20805973	20808440	+	CDS
28	LOC_Os01g29750	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16663779	16670758	-	CDS,downstream
28	LOC_Os06g21460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12399399	12400852	-	CDS
28	LOC_Os07g43080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25813638	25814363	-	CDS,promoter,downstream
28	LOC_Os02g28150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	16664420	16666081	+	CDS,promoter,downstream
28	LOC_Os03g36279	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	20122187	20123763	-	three_prime_UTR,promoter,downstream
28	LOC_Os12g10020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5308741	5309115	-	CDS,promoter,downstream
28	LOC_Os07g22820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12870545	12873026	+	CDS,promoter,downstream
28	LOC_Os01g33630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18505474	18510307	-	CDS,downstream
28	LOC_Os01g27670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15430892	15433916	-	CDS,promoter
28	LOC_Os06g32870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19117992	19124087	+	CDS,downstream
28	LOC_Os11g18260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10285032	10288387	-	CDS,promoter,downstream
28	LOC_Os12g27010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15813421	15816638	-	CDS,promoter,downstream
28	LOC_Os11g43060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	25503467	25511234	-	CDS,promoter
28	LOC_Os09g09880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	5372270	5374477	+	CDS,downstream
28	LOC_Os04g26430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15397941	15401036	-	CDS
28	LOC_Os11g35290	OsWAK119 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK119 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr11	20217631	20219616	-	CDS
28	LOC_Os05g14410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8123648	8127126	-	CDS,downstream
28	LOC_Os11g20730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11996566	11997051	-	CDS,downstream
28	LOC_Os07g47010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	28087757	28091751	-	CDS
28	LOC_Os08g10060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5828125	5834223	-	CDS,promoter,downstream
28	LOC_Os11g35970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20669554	20675849	-	CDS,promoter
28	LOC_Os05g17470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10033794	10037996	-	CDS,promoter,downstream
28	LOC_Os09g28330	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	17197069	17201792	-	CDS
28	LOC_Os03g20930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	11870244	11875270	-	CDS
28	LOC_Os06g28270	glycerol 3-phosphate permease, putative	gene	glycerol 3-phosphate permease, putative	chr6	16061895	16063707	-	CDS,downstream
28	LOC_Os05g20460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12006557	12009404	-	CDS,promoter
28	LOC_Os06g24680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14490210	14492750	-	CDS,promoter,downstream
28	LOC_Os12g28480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16826827	16827378	+	CDS,promoter,downstream
28	LOC_Os04g28660	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	16807895	16808468	+	CDS,promoter,downstream
28	LOC_Os07g14940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	8560539	8564218	-	CDS
28	LOC_Os02g56790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	34803569	34806873	-	CDS,promoter
28	LOC_Os08g17250	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	10556668	10557363	+	CDS,promoter,downstream
28	LOC_Os07g19120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11321356	11322003	-	CDS,downstream
28	LOC_Os07g29840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17538969	17551783	-	CDS
28	LOC_Os01g46010	hypothetical protein	gene	hypothetical protein	chr1	26153586	26154735	+	CDS,downstream
28	LOC_Os08g23900	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr8	14461955	14462407	+	CDS,promoter,downstream
28	LOC_Os08g35330	hypothetical protein	gene	hypothetical protein	chr8	22282887	22283816	-	CDS
28	LOC_Os03g03110	hypothetical protein	gene	hypothetical protein	chr3	1309376	1310018	+	CDS,promoter,downstream
28	LOC_Os11g19570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11269197	11273364	+	CDS,promoter,downstream
28	LOC_Os05g38060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	22250079	22253643	-	CDS,promoter
28	LOC_Os07g49490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29640066	29642558	+	CDS,promoter
28	LOC_Os08g10370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6078162	6079265	-	CDS,promoter,downstream
28	LOC_Os12g26430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15442818	15445127	+	CDS,downstream
28	LOC_Os10g17840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8956659	8958156	+	CDS,promoter,downstream
28	LOC_Os08g20870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12516475	12519691	+	CDS,promoter,downstream
28	LOC_Os10g20690	hypothetical protein	gene	hypothetical protein	chr10	10397734	10398503	+	CDS,downstream
28	LOC_Os07g45630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27243214	27246433	-	CDS,promoter,downstream
28	LOC_Os09g16830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	10277418	10279355	-	CDS,promoter,downstream
28	LOC_Os07g28120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16398178	16401836	-	CDS,downstream
28	LOC_Os01g31330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17138277	17139011	-	CDS,promoter,downstream
28	LOC_Os04g55140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	32595985	32599882	-	CDS
28	LOC_Os06g15050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8528850	8532274	-	CDS,downstream
28	LOC_Os02g18900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11031487	11036664	-	CDS,promoter,downstream
28	LOC_Os01g33960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18682970	18692543	-	CDS,downstream
28	LOC_Os02g15380	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr2	8603933	8605922	-	CDS,promoter,downstream
28	LOC_Os02g16390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9335828	9337991	+	CDS,promoter,downstream
28	LOC_Os04g19080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10579502	10582544	+	CDS,promoter,downstream
28	LOC_Os05g27190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15757244	15757922	+	CDS,promoter,downstream
28	LOC_Os11g18820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10673678	10676867	-	CDS,promoter,downstream
28	LOC_Os10g11794	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6534940	6546489	+	CDS,promoter
28	LOC_Os11g22790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12648358	12650951	-	CDS,promoter,downstream
28	LOC_Os03g01684	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	415714	427608	+	CDS,promoter
28	LOC_Os11g30840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17487490	17491066	-	CDS,downstream
28	LOC_Os04g58300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	34517384	34519370	-	CDS,promoter
28	LOC_Os12g06530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3158983	3164652	+	CDS,downstream
28	LOC_Os05g29060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	17007334	17008313	-	CDS,promoter
28	LOC_Os12g26140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15220817	15226002	+	CDS,downstream
28	LOC_Os10g21950	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	11252526	11263878	-	CDS
28	LOC_Os03g37620	hypothetical protein	gene	hypothetical protein	chr3	20860740	20861102	-	CDS,promoter,downstream
28	LOC_Os06g37860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22415506	22418759	-	CDS,promoter,downstream
28	LOC_Os10g34890	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	18551565	18556573	-	CDS,promoter
28	LOC_Os01g28630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16019201	16020497	+	CDS,downstream
28	LOC_Os02g05090	hypothetical protein	gene	hypothetical protein	chr2	2431134	2431901	+	CDS,downstream
28	LOC_Os07g17890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10583151	10583695	+	CDS,promoter,downstream
28	LOC_Os05g22910	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	12962279	12964863	-	CDS,promoter,downstream
28	LOC_Os03g42180	hypothetical protein	gene	hypothetical protein	chr3	23461107	23461475	-	CDS,promoter,downstream
28	LOC_Os08g23050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13870095	13874295	+	CDS,promoter
28	LOC_Os02g18070	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr2	10490444	10496411	+	CDS,downstream
28	LOC_Os12g22160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12483326	12484279	+	CDS,promoter,downstream
28	LOC_Os04g07320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3883336	3889380	-	CDS,promoter,downstream
28	LOC_Os05g31340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18154675	18160341	+	CDS,promoter,downstream
28	LOC_Os09g08600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4481037	4481798	-	CDS,promoter,downstream
28	LOC_Os08g02470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	993381	999217	+	CDS,downstream
28	LOC_Os07g45870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27364157	27366240	+	CDS,promoter,downstream
28	LOC_Os07g25190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14387981	14394871	+	CDS,promoter,downstream
28	LOC_Os06g50280	OsFBL31 - F-box domain and LRR containing protein	gene	OsFBL31 - F-box domain and LRR containing protein	chr6	30433756	30436762	-	CDS,promoter,downstream
28	LOC_Os08g30680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18919504	18924363	-	CDS
28	LOC_Os05g25610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14830530	14834191	-	CDS
28	LOC_Os01g61110	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr1	35368110	35378490	-	CDS,promoter
28	LOC_Os11g44640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26519122	26520690	+	CDS,promoter
28	LOC_Os12g11730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6361141	6364552	-	CDS
28	LOC_Os11g25050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13806362	13811717	-	CDS,downstream
28	LOC_Os12g08370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4258770	4260062	-	CDS,promoter,downstream
28	LOC_Os04g18080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	9974025	9978247	-	CDS,promoter,downstream
28	LOC_Os02g20920	hypothetical protein	gene	hypothetical protein	chr2	12360551	12362631	-	CDS,promoter,downstream
28	LOC_Os08g10360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6070553	6077866	+	CDS,downstream
28	LOC_Os05g29730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17134175	17135243	-	CDS,promoter,downstream
28	LOC_Os04g10030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	5391367	5394699	-	CDS,promoter,downstream
28	LOC_Os09g24159	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14343229	14343911	-	three_prime_UTR,promoter,downstream
28	LOC_Os12g03554	zinc finger C-x8-C-x5-C-x3-H type family protein	gene	zinc finger C-x8-C-x5-C-x3-H type family protein	chr12	1411001	1420875	+	CDS
28	LOC_Os03g45140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	25481165	25487277	-	CDS
28	LOC_Os04g54060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	32029726	32035772	+	CDS,promoter
28	LOC_Os01g47150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	26946374	26950801	+	CDS,promoter,downstream
28	LOC_Os10g28510	expressed protein	gene	expressed protein	chr10	14760230	14768117	-	three_prime_UTR,promoter
28	LOC_Os08g13590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8072797	8078047	-	CDS,promoter,downstream
28	LOC_Os05g25140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14510031	14514564	-	CDS,promoter
28	LOC_Os05g50520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28908777	28913481	+	CDS,promoter,downstream
28	LOC_Os08g20050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12011871	12014087	+	CDS,promoter,downstream
28	LOC_Os10g14940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7846680	7847291	+	CDS,promoter,downstream
28	LOC_Os01g28040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	15680205	15685496	-	CDS
28	LOC_Os06g32944	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr6	19186000	19191401	-	CDS
28	LOC_Os04g18850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10477629	10481260	+	CDS,promoter,downstream
28	LOC_Os06g31120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18088463	18090303	+	CDS,promoter
28	LOC_Os03g37210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20618975	20626045	+	CDS,promoter,downstream
28	LOC_Os11g22880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12696766	12697645	+	CDS,promoter,downstream
28	LOC_Os10g20970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10543481	10548279	+	CDS,downstream
28	LOC_Os01g33136	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18239430	18244674	-	CDS,downstream
28	LOC_Os04g25600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14827557	14833711	+	CDS
28	LOC_Os03g36270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20118994	20121958	+	CDS,promoter,downstream
28	LOC_Os10g05190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	2532325	2543818	+	CDS,downstream
28	LOC_Os10g06310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3244419	3252779	+	CDS,downstream
28	LOC_Os11g27410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15308912	15314659	+	CDS,promoter
28	LOC_Os08g19280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	11533169	11534758	-	CDS,promoter,downstream
28	LOC_Os03g34210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19477499	19481159	+	CDS,promoter,downstream
28	LOC_Os06g48110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29110104	29114618	-	CDS,promoter
28	LOC_Os05g13590	hypothetical protein	gene	hypothetical protein	chr5	7536115	7540474	-	CDS,promoter
28	LOC_Os04g02350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	827212	833104	-	CDS,downstream
28	LOC_Os08g38950	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	24610541	24610873	+	CDS,promoter,downstream
28	LOC_Os10g24620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12562592	12568527	+	CDS,downstream
28	LOC_Os11g06400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3077964	3085886	-	CDS
28	LOC_Os05g40660	ulp1 protease family protein, putative	gene	ulp1 protease family protein, putative	chr5	23781951	23786671	+	CDS,downstream
28	LOC_Os08g31010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19142539	19147431	+	CDS,downstream
28	LOC_Os05g23510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13394786	13399174	-	CDS,promoter
28	LOC_Os10g08180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4435619	4444891	+	CDS,downstream
28	LOC_Os04g15990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8679436	8680170	+	CDS,promoter,downstream
28	LOC_Os02g58770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35895109	35905682	-	CDS,promoter,downstream
28	LOC_Os04g31220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	18511240	18515462	-	CDS,promoter
28	LOC_Os05g25010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14416066	14422826	+	CDS,downstream
28	LOC_Os01g38010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21292303	21293652	+	CDS,promoter,downstream
28	LOC_Os04g21090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11843264	11844818	+	CDS,downstream
28	LOC_Os11g16640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9222934	9225943	-	CDS,promoter
28	LOC_Os08g24640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14890431	14893372	+	CDS,promoter,downstream
28	LOC_Os08g19770	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11840141	11844364	-	CDS,promoter
28	LOC_Os11g24310	hypothetical protein	gene	hypothetical protein	chr11	13387130	13387456	+	CDS,promoter,downstream
28	LOC_Os05g23520	hypothetical protein	gene	hypothetical protein	chr5	13413529	13414068	+	CDS,promoter,downstream
28	LOC_Os07g08560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	4412654	4419470	-	CDS
28	LOC_Os04g48580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28765211	28768764	-	CDS,promoter,downstream
28	LOC_Os02g58680	hypothetical protein	gene	hypothetical protein	chr2	35851636	35852414	-	CDS,promoter,downstream
28	LOC_Os01g10770	hypothetical protein	gene	hypothetical protein	chr1	5756491	5757607	-	CDS,downstream
28	LOC_Os06g19920	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11392976	11397608	+	CDS,promoter
28	LOC_Os11g17900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10033448	10040357	-	CDS,promoter
28	LOC_Os05g06230	hypothetical protein	gene	hypothetical protein	chr5	3153081	3156042	+	CDS,downstream
28	LOC_Os06g37340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22065285	22071259	-	CDS
28	LOC_Os10g36460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	19434129	19437842	+	CDS,promoter,downstream
28	LOC_Os08g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13397118	13398660	-	CDS,downstream
28	LOC_Os04g09500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5083989	5084531	-	CDS,promoter,downstream
28	LOC_Os02g03240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	1295233	1299527	+	CDS
28	LOC_Os01g32760	hypothetical protein	gene	hypothetical protein	chr1	17968647	17970638	-	CDS,promoter,downstream
28	LOC_Os08g19530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11675030	11677736	-	CDS,promoter,downstream
28	LOC_Os12g20080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11671794	11672486	+	CDS,promoter,downstream
28	LOC_Os03g33384	hypothetical protein	gene	hypothetical protein	chr3	19090161	19090624	-	CDS,promoter,downstream
28	LOC_Os01g18520	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	10414769	10418290	+	CDS
28	LOC_Os06g04110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1714409	1716222	+	CDS,promoter
28	LOC_Os06g25040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14656491	14656949	-	CDS,promoter,downstream
28	LOC_Os07g32210	precollagen-D, putative	gene	precollagen-D, putative	chr7	19138414	19138905	-	CDS,promoter,downstream
28	LOC_Os06g33280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19371359	19374307	-	CDS,promoter
28	LOC_Os02g14260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7821443	7825721	-	CDS,downstream
28	LOC_Os01g71850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	41620511	41625703	-	CDS,promoter,downstream
28	LOC_Os11g09928	unknown	gene	unknown	chr11	5312379	5313059	-	three_prime_UTR,promoter
28	LOC_Os06g32660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18994779	18997641	+	CDS,downstream
28	LOC_Os02g49200	hypothetical protein	gene	hypothetical protein	chr2	30072777	30074858	+	CDS
28	LOC_Os05g24240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13961399	13965634	+	CDS,downstream
28	LOC_Os03g36600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20289168	20294983	+	CDS,promoter,downstream
28	LOC_Os09g06400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3015326	3017659	-	CDS,downstream
28	LOC_Os02g19030	hypothetical protein	gene	hypothetical protein	chr2	11111073	11113176	-	CDS,promoter
28	LOC_Os07g18830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11149860	11150075	+	CDS,promoter,downstream
28	LOC_Os12g14790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8456867	8458809	+	CDS,promoter,downstream
28	LOC_Os04g27290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	15948530	15949764	-	CDS,promoter,downstream
28	LOC_Os02g31010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18514373	18518146	-	CDS,downstream
28	LOC_Os12g16070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9159547	9161422	+	CDS,promoter,downstream
28	LOC_Os10g08120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4405048	4407803	-	CDS,promoter,downstream
28	LOC_Os02g31040	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed	gene	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed	chr2	18540823	18546366	+	CDS,downstream
28	LOC_Os02g25790	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	15105032	15110235	-	CDS,promoter
28	LOC_Os04g06830	hypothetical protein	gene	hypothetical protein	chr4	3594951	3595752	+	CDS,promoter,downstream
28	LOC_Os06g19520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	11111020	11114073	-	CDS,promoter,downstream
28	LOC_Os07g32240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19165351	19165677	-	CDS,promoter
28	LOC_Os08g16220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9886425	9888306	+	CDS,downstream
28	LOC_Os09g07970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4094552	4098209	-	CDS,downstream
28	LOC_Os08g17480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10701883	10708355	+	CDS,promoter,downstream
28	LOC_Os12g14650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8372760	8376409	+	CDS,promoter
28	LOC_Os06g17230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9977198	9982699	+	CDS,downstream
28	LOC_Os01g16580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9412371	9414979	+	CDS,promoter,downstream
28	LOC_Os04g54280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	32134536	32138640	-	CDS
28	LOC_Os11g05720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	2616909	2619497	+	CDS,promoter,downstream
28	LOC_Os07g34410	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	20640506	20644905	-	CDS
28	LOC_Os12g22200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12508468	12514191	+	CDS,promoter,downstream
28	LOC_Os09g24020	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14297007	14297821	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os09g16740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10240972	10244215	+	CDS,promoter
28	LOC_Os08g20040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12007770	12009558	+	CDS,promoter,downstream
28	LOC_Os05g46660	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr5	26943116	26945038	+	CDS,promoter
28	LOC_Os06g36110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21136513	21141892	+	CDS,downstream
28	LOC_Os12g13350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	7450551	7450945	-	CDS,downstream
28	LOC_Os09g23670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	14067610	14070736	-	CDS
28	LOC_Os07g17780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10504993	10508903	-	CDS,promoter,downstream
28	LOC_Os06g24980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14629292	14638773	+	CDS
28	LOC_Os10g14080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7673072	7673545	+	CDS,promoter,downstream
28	LOC_Os09g39330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22609915	22619148	+	CDS
28	LOC_Os11g20670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11970324	11971588	+	CDS,promoter,downstream
28	LOC_Os04g10590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5738083	5740190	+	CDS,downstream
28	LOC_Os10g08730	hypothetical protein	gene	hypothetical protein	chr10	4752307	4753732	-	CDS,promoter,downstream
28	LOC_Os11g17770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	9938480	9945114	-	CDS,downstream
28	LOC_Os11g07650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3903497	3908404	-	CDS
28	LOC_Os01g33580	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	18481072	18482529	+	CDS,downstream
28	LOC_Os07g22520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12666980	12669289	-	CDS,downstream
28	LOC_Os04g22020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12462503	12464989	+	CDS,promoter,downstream
28	LOC_Os02g29650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17645833	17646303	+	CDS,promoter,downstream
28	LOC_Os01g15280	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	8549296	8551646	-	CDS,three_prime_UTR,promoter
28	LOC_Os06g51560	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	31238408	31238980	+	CDS,downstream
28	LOC_Os06g16580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9521337	9525055	+	CDS
28	LOC_Os07g22410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12582416	12593126	+	CDS,promoter,downstream
28	LOC_Os08g12640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7474628	7477430	+	CDS,promoter,downstream
28	LOC_Os01g17970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	10055912	10056970	+	CDS,downstream
28	LOC_Os03g46430	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	26254529	26257310	+	CDS,downstream
28	LOC_Os07g22150	hypothetical protein	gene	hypothetical protein	chr7	12373990	12374226	-	CDS,promoter,downstream
28	LOC_Os10g03330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1406730	1410416	-	CDS,downstream
28	LOC_Os01g24130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13600530	13603405	-	CDS
28	LOC_Os03g20890	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	11830035	11833561	-	CDS,promoter
28	LOC_Os05g23290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13236211	13241055	-	CDS,promoter
28	LOC_Os01g23040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12961624	12967890	-	CDS,promoter,downstream
28	LOC_Os07g12680	LZ-NBS-LRR class RGA, putative	gene	LZ-NBS-LRR class RGA, putative	chr7	7243149	7244022	-	CDS,promoter,downstream
28	LOC_Os05g27060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15675243	15680949	+	CDS,downstream
28	LOC_Os07g29120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17052908	17058196	-	CDS
28	LOC_Os12g09400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	4924925	4929037	+	CDS,promoter,downstream
28	LOC_Os07g34080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20371788	20375093	+	CDS,downstream
28	LOC_Os01g35700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19766753	19767436	-	CDS,downstream
28	LOC_Os05g09250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5170684	5171778	+	CDS,promoter,downstream
28	LOC_Os11g10220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5542588	5544142	-	CDS,downstream
28	LOC_Os07g45720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27294890	27297688	+	CDS,promoter,downstream
28	LOC_Os12g18010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	10346128	10356309	-	CDS,downstream
28	LOC_Os08g11669	hypothetical protein	gene	hypothetical protein	chr8	6841140	6844295	+	three_prime_UTR,downstream
28	LOC_Os09g23966	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14279453	14280361	-	three_prime_UTR,promoter,downstream
28	LOC_Os03g28230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	16238840	16240287	-	CDS,promoter
28	LOC_Os08g36870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	23293255	23298999	+	CDS,downstream
28	LOC_Os08g24900	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	15063815	15070165	-	three_prime_UTR
28	LOC_Os06g32420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18860217	18861907	-	CDS,promoter,downstream
28	LOC_Os05g26368	prolamin precursor, putative, expressed	gene	prolamin precursor, putative, expressed	chr5	15278133	15278763	+	three_prime_UTR,promoter,downstream
28	LOC_Os11g23090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12826046	12828976	+	CDS,downstream
28	LOC_Os07g20500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11835614	11837623	-	CDS,promoter,downstream
28	LOC_Os11g26680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14819398	14822928	+	CDS,promoter
28	LOC_Os12g11330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6103451	6108924	-	CDS
28	LOC_Os03g35580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19722275	19724139	-	CDS,promoter
28	LOC_Os11g26820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14930966	14937385	+	CDS
28	LOC_Os05g27140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15734797	15739564	-	CDS,promoter,downstream
28	LOC_Os05g28420	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr5	16580224	16583259	+	CDS,promoter,downstream
28	LOC_Os12g11210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6035199	6045804	+	CDS
28	LOC_Os08g05250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2732916	2739024	-	CDS,promoter,downstream
28	LOC_Os01g02380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	755894	761050	-	CDS
28	LOC_Os06g12720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6944034	6946819	-	CDS,promoter,downstream
28	LOC_Os12g18260	zinc knuckle domain containing protein	gene	zinc knuckle domain containing protein	chr12	10537586	10541390	+	CDS,promoter,downstream
28	LOC_Os06g14100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	7859693	7865442	-	CDS
28	LOC_Os01g42590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	24208529	24213663	-	CDS,promoter,downstream
28	LOC_Os10g02960	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr10	1216506	1221180	-	CDS,promoter,downstream
28	LOC_Os04g26300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15323175	15326510	+	CDS
28	LOC_Os10g18430	agmatine coumaroyltransferase, putative	gene	agmatine coumaroyltransferase, putative	chr10	9296035	9297006	+	CDS,promoter
28	LOC_Os01g19460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11013225	11019340	+	CDS,downstream
28	LOC_Os08g12380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7293108	7294943	-	CDS,promoter,downstream
28	LOC_Os06g30840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	17894244	17898067	+	CDS,downstream
28	LOC_Os08g24250	hypothetical protein	gene	hypothetical protein	chr8	14635546	14637453	+	CDS,promoter,downstream
28	LOC_Os01g50800	hypothetical protein	gene	hypothetical protein	chr1	29177930	29181692	-	CDS,promoter
28	LOC_Os10g17050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8469375	8473940	-	CDS,promoter,downstream
28	LOC_Os04g07430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3945201	3945830	+	CDS,promoter,downstream
28	LOC_Os06g35250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20554648	20557647	+	CDS,promoter,downstream
28	LOC_Os06g41900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25132836	25140389	+	CDS,promoter,downstream
28	LOC_Os07g13610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	7807585	7811493	-	CDS,promoter
28	LOC_Os12g15840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9031745	9032373	-	CDS,promoter,downstream
28	LOC_Os08g35450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22342923	22347615	-	CDS,downstream
28	LOC_Os06g28460	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16186334	16193212	+	CDS,promoter
28	LOC_Os06g25580	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	14958946	14964967	-	CDS
28	LOC_Os09g35640	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	20500280	20500567	-	CDS,promoter,downstream
28	LOC_Os03g29035	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	16485279	16494546	-	CDS,promoter
28	LOC_Os04g22180	hypothetical protein	gene	hypothetical protein	chr4	12551202	12552948	+	CDS,promoter
28	LOC_Os02g26270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15419622	15423088	-	CDS,promoter,downstream
28	LOC_Os08g37220	hypothetical protein	gene	hypothetical protein	chr8	23512905	23513644	-	CDS
28	LOC_Os03g36980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20506081	20507175	-	CDS,promoter,downstream
28	LOC_Os12g15070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8601565	8602272	-	CDS,promoter,downstream
28	LOC_Os10g30510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15792741	15797102	+	CDS
28	LOC_Os01g64060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37203812	37205080	-	CDS,promoter
28	LOC_Os08g02890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1235456	1236463	+	CDS,promoter,downstream
28	LOC_Os12g34160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20671468	20682583	+	CDS,downstream
28	LOC_Os11g35730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20508465	20511019	+	CDS,downstream
28	LOC_Os04g49800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	29503344	29508809	+	CDS,downstream
28	LOC_Os05g20180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11810453	11818146	+	CDS,promoter,downstream
28	LOC_Os07g29160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17069286	17070610	+	CDS,promoter,downstream
28	LOC_Os03g39670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22067548	22068666	+	CDS,promoter,downstream
28	LOC_Os02g26410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15509126	15509677	-	CDS,promoter,downstream
28	LOC_Os01g23460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13179281	13181762	+	CDS,downstream
28	LOC_Os04g23950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	13685167	13686437	+	CDS,downstream
28	LOC_Os07g06220	hypothetical protein	gene	hypothetical protein	chr7	3029405	3030074	-	CDS,promoter,downstream
28	LOC_Os09g02910	hypothetical protein	gene	hypothetical protein	chr9	1360120	1368902	-	CDS,promoter,downstream
28	LOC_Os08g33580	zinc knuckle family protein, putative	gene	zinc knuckle family protein, putative	chr8	20962130	20964649	+	CDS,promoter
28	LOC_Os11g19820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11413320	11416182	+	CDS,promoter,downstream
28	LOC_Os08g12500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7394396	7403729	+	CDS,promoter
28	LOC_Os07g45470	hypothetical protein	gene	hypothetical protein	chr7	27126385	27128291	+	CDS,downstream
28	LOC_Os07g26330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	15131876	15132142	+	CDS,promoter,downstream
28	LOC_Os12g13450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7536903	7538444	-	CDS,promoter
28	LOC_Os05g17220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9855552	9858451	-	CDS,promoter,downstream
28	LOC_Os03g37700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20905366	20907038	+	CDS,promoter,downstream
28	LOC_Os12g37330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	22891363	22894318	+	CDS,promoter,downstream
28	LOC_Os08g10910	hypothetical protein	gene	hypothetical protein	chr8	6429182	6429631	-	CDS,promoter,downstream
28	LOC_Os12g23880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	13575140	13577488	-	CDS,downstream
28	LOC_Os06g31870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18514686	18519399	+	CDS,promoter,downstream
28	LOC_Os09g28070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17043745	17047410	+	CDS,promoter
28	LOC_Os02g09950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	5168444	5175359	-	CDS
28	LOC_Os04g01190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	140666	142861	+	CDS,promoter,downstream
28	LOC_Os01g70760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	40955312	40958619	-	CDS,promoter
28	LOC_Os03g35720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19782410	19785170	-	CDS,promoter,downstream
28	LOC_Os05g27080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15684861	15694913	+	CDS
28	LOC_Os04g22830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12918438	12921173	+	CDS,promoter,downstream
28	LOC_Os11g06620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	3194553	3206778	+	CDS
28	LOC_Os06g29650	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative, expressed	gene	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative, expressed	chr6	17002631	17009234	-	three_prime_UTR,promoter,downstream
28	LOC_Os04g43950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	25867698	25872110	+	CDS,downstream
28	LOC_Os06g37917	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22444812	22445830	+	CDS,promoter,downstream
28	LOC_Os08g27350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16688924	16694740	-	CDS
28	LOC_Os10g02284	OsWAK97 - OsWAK receptor-like protein kinase, expressed	gene	OsWAK97 - OsWAK receptor-like protein kinase, expressed	chr10	817676	820860	+	CDS
28	LOC_Os05g27630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	16015747	16019570	-	CDS,promoter
28	LOC_Os02g51240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31372122	31376793	+	CDS,downstream
28	LOC_Os02g43270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26056650	26061083	-	CDS,downstream
28	LOC_Os08g08410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4846273	4846998	+	CDS,promoter,downstream
28	LOC_Os03g38820	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr3	21554131	21559392	-	CDS
28	LOC_Os11g28800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16225163	16226020	+	CDS,promoter
28	LOC_Os08g19220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	11492929	11500274	+	CDS,downstream
28	LOC_Os08g27120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16569538	16574618	-	CDS,promoter,downstream
28	LOC_Os10g12548	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6995108	7002492	-	CDS,downstream
28	LOC_Os06g26310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15398161	15398649	+	CDS,promoter,downstream
28	LOC_Os05g26520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	15354373	15356323	-	CDS,promoter,downstream
28	LOC_Os12g13000	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	7198824	7199612	-	CDS,promoter,downstream
28	LOC_Os09g01970	hypothetical protein	gene	hypothetical protein	chr9	665201	667845	-	CDS,downstream
28	LOC_Os02g24220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	14030210	14031590	+	CDS,promoter,downstream
28	LOC_Os11g12200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6794390	6801092	+	CDS,promoter,downstream
28	LOC_Os04g08768	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4772848	4774047	-	CDS,promoter,downstream
28	LOC_Os01g34960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	19344592	19346343	+	CDS,promoter,downstream
28	LOC_Os12g23800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13525170	13530320	-	CDS,downstream
28	LOC_Os11g26560	hypothetical protein	gene	hypothetical protein	chr11	14756344	14757655	+	CDS,promoter
28	LOC_Os06g51550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	31234133	31236941	+	CDS,promoter,downstream
28	LOC_Os02g19610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11447927	11451875	+	CDS,promoter,downstream
28	LOC_Os04g19250	hypothetical protein	gene	hypothetical protein	chr4	10679928	10680431	+	CDS,promoter,downstream
28	LOC_Os11g32690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	18835121	18837316	-	CDS,promoter
28	LOC_Os06g27460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15545140	15549775	+	CDS,promoter,downstream
28	LOC_Os05g24050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13801924	13804889	-	CDS
28	LOC_Os10g42570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	22877373	22878632	-	CDS,promoter,downstream
28	LOC_Os06g29530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16922779	16924710	+	CDS,promoter,downstream
28	LOC_Os01g41500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23486679	23489581	-	CDS,promoter,downstream
28	LOC_Os08g11530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6757661	6758855	-	CDS,downstream
28	LOC_Os04g22490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12723899	12727468	-	CDS,promoter,downstream
28	LOC_Os08g21160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12639370	12643476	-	CDS,promoter
28	LOC_Os11g25390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14009244	14012533	+	CDS,promoter,downstream
28	LOC_Os06g16840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9749163	9752141	+	CDS,downstream
28	LOC_Os01g18030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10087366	10088537	+	CDS,promoter
28	LOC_Os01g25839	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	14650902	14658995	-	CDS,promoter,downstream
28	LOC_Os03g45070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25437880	25439829	+	CDS,promoter,downstream
28	LOC_Os06g50780	expressed protein	gene	expressed protein	chr6	30724257	30731558	-	CDS,downstream
28	LOC_Os12g18320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10571745	10576156	-	CDS,promoter,downstream
28	LOC_Os03g44930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25363611	25365436	+	CDS,downstream
28	LOC_Os05g15130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	8581451	8583631	-	CDS,promoter,downstream
28	LOC_Os12g30700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18407578	18413346	-	CDS,promoter,downstream
28	LOC_Os12g23030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13014785	13018814	-	CDS,promoter
28	LOC_Os02g06110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	3043920	3047434	-	CDS,promoter
28	LOC_Os09g03110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1477822	1488054	-	CDS,promoter
28	LOC_Os03g19640	hypothetical protein	gene	hypothetical protein	chr3	11044685	11045193	+	CDS,promoter
28	LOC_Os07g22100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12350385	12351586	+	CDS,promoter,downstream
28	LOC_Os12g30200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18098055	18101751	-	CDS,promoter,downstream
28	LOC_Os10g13680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7439226	7441412	+	CDS,promoter,downstream
28	LOC_Os07g22140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12371474	12372678	-	CDS,downstream
28	LOC_Os10g17400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8697479	8702739	-	CDS,promoter,downstream
28	LOC_Os03g44934	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	25366829	25367356	-	CDS,promoter,downstream
28	LOC_Os10g13610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7392945	7398502	+	CDS,promoter,downstream
28	LOC_Os07g18320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10852414	10855845	+	CDS,downstream
28	LOC_Os02g05580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	2708165	2711320	-	CDS,promoter
28	LOC_Os02g03350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	1352190	1358088	+	CDS
28	LOC_Os02g38270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23139767	23141128	+	CDS,downstream
28	LOC_Os06g28250	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16051473	16055777	-	CDS
28	LOC_Os06g45210	pollen allergen, putative, expressed	gene	pollen allergen, putative, expressed	chr6	27328134	27329359	-	CDS
28	LOC_Os09g12810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7365959	7368733	+	CDS,promoter,downstream
28	LOC_Os11g12230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6816223	6820175	+	CDS,promoter
28	LOC_Os05g09130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5087579	5097820	+	CDS,downstream
28	LOC_Os02g34670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	20789559	20791046	+	CDS,promoter,downstream
28	LOC_Os05g15950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9005321	9008906	+	CDS,promoter,downstream
28	LOC_Os05g24410	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	14047573	14048304	-	CDS,promoter,downstream
28	LOC_Os03g63030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35633407	35637218	-	CDS
28	LOC_Os11g36990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	21361263	21364584	+	CDS,promoter,downstream
28	LOC_Os10g12010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6680790	6686664	-	CDS,downstream
28	LOC_Os09g05000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	2692800	2693939	+	CDS,promoter,downstream
28	LOC_Os06g22760	OsMADS71 - MADS-box family gene with M-alpha type-box	gene	OsMADS71 - MADS-box family gene with M-alpha type-box	chr6	13243911	13244627	+	CDS,promoter,downstream
28	LOC_Os09g01220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	189357	191707	+	CDS,promoter,downstream
28	LOC_Os07g25030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14268707	14270129	-	CDS,promoter
28	LOC_Os07g03670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	1484654	1488594	+	CDS
28	LOC_Os09g14470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8551277	8555712	-	CDS,promoter,downstream
28	LOC_Os01g31960	hypothetical protein	gene	hypothetical protein	chr1	17495470	17496256	-	CDS,promoter,downstream
28	LOC_Os01g18570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10456566	10459857	-	CDS,promoter
28	LOC_Os07g11610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	6404797	6410946	-	CDS
28	LOC_Os12g18940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10988501	10988821	+	CDS,promoter,downstream
28	LOC_Os05g06620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3420476	3422449	-	CDS,promoter,downstream
28	LOC_Os03g49530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	28194684	28200801	-	CDS,promoter,downstream
28	LOC_Os07g15660	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr7	9089757	9094239	+	CDS
28	LOC_Os04g04080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1878543	1880314	+	CDS,downstream
28	LOC_Os04g05240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2607474	2610191	-	CDS,promoter,downstream
28	LOC_Os01g12360	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	6750357	6756512	-	CDS
28	LOC_Os02g20300	hypothetical protein	gene	hypothetical protein	chr2	11958562	11960588	-	CDS,promoter
28	LOC_Os04g07944	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4229919	4233984	+	CDS,promoter,downstream
28	LOC_Os03g24970	SWIM zinc finger family protein, putative	gene	SWIM zinc finger family protein, putative	chr3	14252482	14253573	-	CDS,downstream
28	LOC_Os05g36030	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	21272365	21273065	+	CDS,promoter,downstream
28	LOC_Os07g47730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28511060	28514000	+	CDS,promoter,downstream
28	LOC_Os12g18180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10487734	10490544	-	CDS,promoter,downstream
28	LOC_Os02g22210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	13234518	13239877	-	CDS,downstream
28	LOC_Os10g16690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8249524	8252381	+	CDS,promoter,downstream
28	LOC_Os12g29200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17284173	17287114	-	CDS,promoter,downstream
28	LOC_Os04g13660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7623671	7624399	+	CDS,promoter,downstream
28	LOC_Os08g04930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2524018	2525360	-	CDS,promoter
28	LOC_Os12g24760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14200549	14203047	+	CDS,downstream
28	LOC_Os11g27880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15583513	15585394	+	CDS,promoter,downstream
28	LOC_Os10g13300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7190867	7194028	+	CDS,promoter,downstream
28	LOC_Os11g22660	hypothetical protein	gene	hypothetical protein	chr11	12572174	12573398	+	CDS,promoter,downstream
28	LOC_Os04g40820	hypothetical protein	gene	hypothetical protein	chr4	24038328	24039393	+	CDS,downstream
28	LOC_Os11g14740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8300243	8302830	+	CDS,promoter
28	LOC_Os06g27710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15687316	15688566	+	CDS,downstream
28	LOC_Os05g09570	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr5	5405471	5409894	+	CDS,promoter
28	LOC_Os02g52100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31880257	31886393	+	CDS,promoter,downstream
28	LOC_Os02g47480	expressed protein	gene	expressed protein	chr2	28997474	29009325	+	CDS,promoter,downstream
28	LOC_Os08g31228	ribosomal protein L27, putative, expressed	gene	ribosomal protein L27, putative, expressed	chr8	19304609	19308797	+	CDS,promoter
28	LOC_Os02g18310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	10622198	10626568	+	CDS,downstream
28	LOC_Os06g22300	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr6	12944070	12951194	+	CDS,promoter
28	LOC_Os11g20570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11922400	11925494	-	CDS,downstream
28	LOC_Os10g42970	expressed protein	gene	expressed protein	chr10	23088893	23090887	-	CDS,downstream
28	LOC_Os06g35280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	20573706	20575023	-	CDS,downstream
28	LOC_Os05g17140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9807071	9813181	+	CDS,promoter,downstream
28	LOC_Os10g01390	OsWAK93 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK93 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr10	238156	241301	-	CDS,promoter,downstream
28	LOC_Os06g28850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16446516	16449850	+	CDS,promoter,downstream
28	LOC_Os02g13490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	7206344	7209363	+	CDS,downstream
28	LOC_Os10g24710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12634601	12639729	-	CDS,promoter,downstream
28	LOC_Os05g06390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3270721	3276910	+	CDS,downstream
28	LOC_Os08g17560	hypothetical protein	gene	hypothetical protein	chr8	10742142	10743656	-	CDS,promoter,downstream
28	LOC_Os11g36360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20954552	20959707	+	CDS,downstream
28	LOC_Os11g19300	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr11	11052530	11059115	-	CDS,promoter
28	LOC_Os04g37870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	22339221	22342259	+	CDS,promoter,downstream
28	LOC_Os12g17220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9849894	9852835	-	CDS,promoter,downstream
28	LOC_Os04g05420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2710900	2716620	-	CDS,promoter,downstream
28	LOC_Os02g31320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18783935	18786919	+	CDS,promoter,downstream
28	LOC_Os08g20790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12484971	12487615	-	CDS,promoter
28	LOC_Os05g26640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15418174	15420036	+	CDS,promoter,downstream
28	LOC_Os04g07990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4246382	4249474	-	CDS,promoter
28	LOC_Os11g22140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12238789	12239794	-	CDS,promoter,downstream
28	LOC_Os12g09140	hypothetical protein	gene	hypothetical protein	chr12	4780791	4781910	+	CDS,downstream
28	LOC_Os02g07380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3811254	3817625	+	CDS,downstream
28	LOC_Os11g33080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	19097787	19105336	+	CDS
28	LOC_Os02g49400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	30178061	30185110	+	CDS,promoter
28	LOC_Os06g15460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	8774902	8778735	-	CDS,promoter,downstream
28	LOC_Os10g22270	hypothetical protein	gene	hypothetical protein	chr10	11451841	11452157	-	CDS,promoter,downstream
28	LOC_Os10g08970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	4866825	4870180	+	CDS,downstream
28	LOC_Os11g38700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22502146	22505478	-	CDS,promoter
28	LOC_Os11g22560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12507297	12509196	-	CDS,promoter,downstream
28	LOC_Os07g47240	expressed protein	gene	expressed protein	chr7	28232263	28233649	-	CDS
28	LOC_Os08g16900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10345499	10349044	+	CDS
28	LOC_Os03g04790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2277757	2280660	+	CDS,downstream
28	LOC_Os12g17520	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	10037579	10041323	-	CDS,promoter,downstream
28	LOC_Os11g45864	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27272104	27277805	-	CDS
28	LOC_Os01g23130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13004145	13008624	-	CDS,promoter,downstream
28	LOC_Os05g14690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8349985	8353111	+	CDS,promoter
28	LOC_Os04g02310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	803996	810542	-	CDS,downstream
28	LOC_Os06g28490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16202640	16203686	+	CDS,promoter,downstream
28	LOC_Os12g23840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13552037	13556725	+	CDS
28	LOC_Os10g11720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6495874	6496503	-	CDS,promoter
28	LOC_Os04g01110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	70255	71923	-	CDS,promoter,downstream
28	LOC_Os07g25340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14474213	14479600	+	CDS,promoter,downstream
28	LOC_Os12g09990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5288205	5293586	+	CDS
28	LOC_Os06g04100	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	1709906	1712529	-	CDS,promoter,downstream
28	LOC_Os11g45880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27281087	27284117	-	CDS,promoter
28	LOC_Os11g25370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13998932	13999840	+	CDS,promoter,downstream
28	LOC_Os12g22520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12709660	12712568	-	CDS,promoter,downstream
28	LOC_Os01g31730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17362397	17368001	-	CDS,promoter,downstream
28	LOC_Os11g25650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14172214	14174581	+	CDS,downstream
28	LOC_Os01g24260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13666068	13669907	-	CDS,downstream
28	LOC_Os11g01810	DNA methyltransferase protein, putative	gene	DNA methyltransferase protein, putative	chr11	427376	431591	+	CDS,downstream
28	LOC_Os04g20860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11699462	11703138	+	CDS,promoter,downstream
28	LOC_Os09g12520	hypothetical protein	gene	hypothetical protein	chr9	7175508	7176211	-	CDS
28	LOC_Os11g11160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6168073	6170219	-	CDS,promoter,downstream
28	LOC_Os03g45570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25717395	25720282	-	CDS,promoter,downstream
28	LOC_Os12g13010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7207778	7212195	+	CDS,downstream
28	LOC_Os07g24460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13929898	13933757	+	CDS,promoter,downstream
28	LOC_Os09g01840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	575976	580734	-	CDS,promoter,downstream
28	LOC_Os03g37610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	20856319	20860257	+	CDS,promoter,downstream
28	LOC_Os11g34510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19752851	19754002	-	CDS,promoter,downstream
28	LOC_Os01g38540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	21644102	21650254	+	CDS
28	LOC_Os03g37350	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr3	20697120	20697801	-	CDS,promoter
28	LOC_Os03g07040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3589994	3591268	-	CDS,downstream
28	LOC_Os04g53270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	31545656	31548609	+	CDS,promoter,downstream
28	LOC_Os11g25000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13773117	13776815	-	CDS,promoter,downstream
28	LOC_Os04g23960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13688659	13691172	+	CDS,promoter,downstream
28	LOC_Os10g18720	hypothetical protein	gene	hypothetical protein	chr10	9442725	9444996	-	CDS,downstream
28	LOC_Os02g25640	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	14985778	14987845	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os12g02270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	715285	716766	+	CDS,downstream
28	LOC_Os09g02840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1331084	1336147	+	CDS
28	LOC_Os06g25160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14719492	14720624	-	CDS,promoter,downstream
28	LOC_Os07g17880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10579883	10582670	+	CDS,promoter,downstream
28	LOC_Os02g21730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	12914264	12917866	-	CDS,promoter,downstream
28	LOC_Os07g23290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	13122449	13125860	-	CDS,downstream
28	LOC_Os03g33060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18915537	18920271	-	CDS,promoter,downstream
28	LOC_Os09g11550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	6445051	6448988	+	CDS,promoter
28	LOC_Os11g33070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19082394	19088544	-	CDS,promoter
28	LOC_Os05g32740	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr5	19109969	19111871	+	CDS,downstream
28	LOC_Os02g23960	hypothetical protein	gene	hypothetical protein	chr2	13884583	13885697	+	CDS,promoter,downstream
28	LOC_Os01g36680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	20365107	20369329	+	CDS,downstream
28	LOC_Os09g20120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	12052827	12059280	+	CDS
28	LOC_Os03g31980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	18285045	18286368	-	CDS,promoter,downstream
28	LOC_Os11g45670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27150203	27153903	+	CDS,promoter
28	LOC_Os12g17290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9885525	9898148	+	CDS,promoter,downstream
28	LOC_Os02g20660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	12172293	12177893	-	CDS,promoter,downstream
28	LOC_Os01g26400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14982184	14983833	+	CDS,promoter,downstream
28	LOC_Os02g19620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11455619	11460968	-	CDS,promoter,downstream
28	LOC_Os04g56894	unknown	gene	unknown	chr4	33726805	33727198	-	CDS,promoter,downstream
28	LOC_Os10g20980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10550890	10554376	+	CDS,promoter
28	LOC_Os12g24555	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	14035937	14041944	-	CDS,promoter,downstream
28	LOC_Os11g23740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12955123	12955590	+	CDS,downstream
28	LOC_Os07g26260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15099791	15104271	+	CDS,promoter,downstream
28	LOC_Os04g16040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8697538	8699574	+	CDS,promoter,downstream
28	LOC_Os12g15939	unknown	gene	unknown	chr12	9082857	9083543	-	CDS,promoter,downstream
28	LOC_Os11g20580	hypothetical protein	gene	hypothetical protein	chr11	11926095	11927551	+	CDS,promoter,downstream
28	LOC_Os07g25330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14464572	14471304	-	CDS,promoter,downstream
28	LOC_Os04g19230	hypothetical protein	gene	hypothetical protein	chr4	10671060	10671389	+	CDS,promoter,downstream
28	LOC_Os08g29830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18331643	18333390	-	CDS,promoter
28	LOC_Os10g24954	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr10	12773800	12782694	+	CDS,downstream
28	LOC_Os03g08950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	4645699	4647879	+	CDS,promoter
28	LOC_Os04g06170	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3208350	3208835	+	CDS,promoter,downstream
28	LOC_Os09g15080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9126292	9129130	-	CDS,promoter,downstream
28	LOC_Os12g13230	hypothetical protein	gene	hypothetical protein	chr12	7362205	7364464	-	CDS,promoter,downstream
28	LOC_Os01g21600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12097965	12101202	+	CDS,downstream
28	LOC_Os05g20200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11822572	11828685	-	CDS,promoter,downstream
28	LOC_Os01g51340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29524136	29525485	-	CDS,promoter,downstream
28	LOC_Os10g19080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9645442	9648117	-	CDS,promoter,downstream
28	LOC_Os04g33010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	19798667	19802212	-	CDS,promoter
28	LOC_Os03g37230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20628508	20630331	+	CDS,promoter,downstream
28	LOC_Os08g29000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	17746441	17752117	+	CDS,promoter,downstream
28	LOC_Os10g03840	hypothetical protein	gene	hypothetical protein	chr10	1739965	1741483	-	CDS
28	LOC_Os10g08006	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4323367	4330751	-	CDS,promoter,downstream
28	LOC_Os02g17070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9763049	9763675	+	CDS,promoter
28	LOC_Os12g03250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1241368	1245665	-	CDS
28	LOC_Os09g07530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3771215	3773590	-	CDS,downstream
28	LOC_Os07g15870	hypothetical protein	gene	hypothetical protein	chr7	9217147	9218338	+	CDS,promoter
28	LOC_Os04g45780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26907696	26911551	-	CDS,promoter
28	LOC_Os02g20830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	12309921	12312303	+	CDS,promoter,downstream
28	LOC_Os11g19640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11310897	11314649	+	CDS,promoter,downstream
28	LOC_Os10g24830	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	12698969	12700454	-	CDS,promoter,downstream
28	LOC_Os02g24170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13994428	13999534	-	CDS,promoter,downstream
28	LOC_Os05g26649	unknown	gene	unknown	chr5	15420757	15421449	-	CDS,promoter,downstream
28	LOC_Os11g13510	stripe rust resistance protein Yr10, putative	gene	stripe rust resistance protein Yr10, putative	chr11	7400589	7403958	+	CDS
28	LOC_Os09g22160	hypothetical protein	gene	hypothetical protein	chr9	13415253	13416210	+	CDS,downstream
28	LOC_Os03g61180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34738965	34742113	-	CDS,promoter,downstream
28	LOC_Os06g39160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23249555	23252138	+	CDS,promoter,downstream
28	LOC_Os09g16899	unknown	gene	unknown	chr9	10321000	10321390	-	CDS,promoter,downstream
28	LOC_Os10g09410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5094493	5095566	-	CDS,promoter,downstream
28	LOC_Os01g25660	hypothetical protein	gene	hypothetical protein	chr1	14543277	14544481	-	CDS,promoter,downstream
28	LOC_Os01g06200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2949097	2952013	-	CDS,promoter,downstream
28	LOC_Os09g09000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4781011	4799217	-	CDS,downstream
28	LOC_Os05g19860	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11571198	11572762	+	CDS,promoter,downstream
28	LOC_Os04g19990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11131271	11138198	+	CDS,promoter
28	LOC_Os08g14730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	8861493	8866645	-	CDS,downstream
28	LOC_Os08g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13615216	13619678	-	CDS,promoter
28	LOC_Os08g32810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	20334495	20337533	-	CDS,promoter,downstream
28	LOC_Os04g23920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13667859	13668107	+	CDS,promoter,downstream
28	LOC_Os04g14670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8232393	8233877	-	CDS,promoter
28	LOC_Os07g06670	OsFBL35 - F-box domain and LRR containing protein	gene	OsFBL35 - F-box domain and LRR containing protein	chr7	3250101	3254282	+	CDS
28	LOC_Os12g39900	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr12	24619342	24622359	-	CDS,downstream
28	LOC_Os04g08150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4333987	4337606	-	CDS,promoter
28	LOC_Os07g11090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6127268	6128587	+	CDS,promoter,downstream
28	LOC_Os07g19300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11419562	11422465	+	CDS,downstream
28	LOC_Os12g26190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15264137	15269840	+	CDS,promoter,downstream
28	LOC_Os05g37620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	21953451	21958443	-	CDS,promoter,downstream
28	LOC_Os04g07660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4068404	4074575	+	CDS,promoter,downstream
28	LOC_Os08g29470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18059289	18060524	-	CDS,promoter,downstream
28	LOC_Os03g33770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19304379	19307226	-	CDS,promoter
28	LOC_Os11g44180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	26214473	26217380	+	CDS
28	LOC_Os08g19950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11940764	11941924	-	CDS,promoter
28	LOC_Os01g24400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13752477	13757451	-	CDS,promoter,downstream
28	LOC_Os06g27440	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15527118	15531796	-	CDS,promoter,downstream
28	LOC_Os09g27720	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	16869210	16869963	+	CDS,promoter,downstream
28	LOC_Os12g27980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	16492630	16496392	-	CDS
28	LOC_Os06g32490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18889330	18895862	-	CDS,promoter
28	LOC_Os03g25900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	14819850	14820671	+	CDS
28	LOC_Os11g06600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3183767	3188285	-	CDS,promoter,downstream
28	LOC_Os05g05990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	2998374	3003007	+	CDS
28	LOC_Os11g15100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8493324	8496232	-	CDS,promoter,downstream
28	LOC_Os05g18900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10968093	10974638	+	CDS
28	LOC_Os11g18910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10749099	10750283	-	CDS,promoter,downstream
28	LOC_Os04g27490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16073841	16080468	+	CDS
28	LOC_Os05g41830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	24433918	24439136	-	CDS
28	LOC_Os12g30280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18136397	18137185	-	CDS,promoter
28	LOC_Os03g16250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8959834	8962253	-	CDS,promoter
28	LOC_Os08g18840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11242818	11245477	+	CDS,promoter,downstream
28	LOC_Os12g09150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4786617	4787184	+	CDS,promoter,downstream
28	LOC_Os12g08390	hypothetical protein	gene	hypothetical protein	chr12	4263094	4263517	-	CDS,downstream
28	LOC_Os12g24220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13799544	13804626	-	CDS,promoter
28	LOC_Os09g17280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10589466	10592798	+	CDS,promoter,downstream
28	LOC_Os07g13230	eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein	gene	eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein	chr7	7576712	7577508	+	CDS,promoter
28	LOC_Os07g07840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3933063	3935861	-	CDS,promoter,downstream
28	LOC_Os05g27770	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	16114665	16119014	+	CDS,promoter,downstream
28	LOC_Os07g16190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9434110	9436861	-	CDS
28	LOC_Os10g09080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4927903	4928671	-	CDS,promoter,downstream
28	LOC_Os12g14984	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8565599	8569302	-	CDS,promoter,downstream
28	LOC_Os01g66450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	38581364	38584274	+	CDS,promoter,downstream
28	LOC_Os05g24450	hypothetical protein	gene	hypothetical protein	chr5	14058395	14059378	+	CDS,promoter,downstream
28	LOC_Os10g11070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6136578	6139508	-	CDS,promoter,downstream
28	LOC_Os11g39720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	23192360	23195039	+	CDS,promoter
28	LOC_Os01g32220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17636813	17643177	-	CDS,promoter,downstream
28	LOC_Os01g34410	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	18973920	18975886	-	CDS,promoter
28	LOC_Os08g11130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6545338	6547501	+	CDS,promoter,downstream
28	LOC_Os03g41570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	23117532	23120944	+	CDS,downstream
28	LOC_Os08g06820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	3804949	3812063	-	CDS,promoter,downstream
28	LOC_Os12g23480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13273350	13274543	-	CDS,promoter,downstream
28	LOC_Os09g21220	hypothetical protein	gene	hypothetical protein	chr9	12808266	12809010	-	CDS,promoter,downstream
28	LOC_Os06g17240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9984252	9987938	+	CDS,promoter
28	LOC_Os02g05570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	2702804	2706490	-	CDS,downstream
28	LOC_Os10g26650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	13842175	13848384	-	CDS,downstream
28	LOC_Os12g28690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16943318	16947730	+	CDS,downstream
28	LOC_Os07g47910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28612496	28615497	-	CDS,downstream
28	LOC_Os04g24210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	13845420	13849380	+	CDS,promoter,downstream
28	LOC_Os12g28920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17086205	17092927	+	CDS,promoter,downstream
28	LOC_Os10g06050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3072566	3075357	+	CDS,promoter,downstream
28	LOC_Os08g10230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	5932415	5934810	+	CDS
28	LOC_Os08g13080	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	7763586	7773860	-	CDS
28	LOC_Os01g34810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19216753	19219644	+	CDS,promoter
28	LOC_Os10g10660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5903384	5906191	-	CDS,promoter,downstream
28	LOC_Os10g30350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15696191	15701416	-	CDS
28	LOC_Os06g36020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21054964	21058845	-	CDS,promoter
28	LOC_Os05g18428	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	10653476	10654277	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os09g14370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8486359	8489755	-	CDS,promoter,downstream
28	LOC_Os04g07290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3866963	3869887	+	CDS,promoter,downstream
28	LOC_Os03g34160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19453047	19454038	-	CDS,promoter,downstream
28	LOC_Os05g17310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9916078	9916832	-	CDS,promoter,downstream
28	LOC_Os12g29000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17150132	17154551	-	CDS,downstream
28	LOC_Os07g06110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2959238	2966200	+	CDS,promoter,downstream
28	LOC_Os02g23980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13897342	13900047	-	CDS,promoter,downstream
28	LOC_Os01g25210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14244151	14245086	-	CDS,promoter
28	LOC_Os12g43160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26767810	26769148	+	CDS,promoter
28	LOC_Os08g03010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1324954	1331587	-	CDS,downstream
28	LOC_Os02g57230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35057895	35061034	-	CDS
28	LOC_Os03g23870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13546725	13549916	-	CDS,promoter,downstream
28	LOC_Os03g33850	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19332885	19335041	+	CDS,promoter,downstream
28	LOC_Os04g05960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3081473	3084225	+	CDS,promoter,downstream
28	LOC_Os06g13929	unknown	gene	unknown	chr6	7761237	7761499	+	CDS,promoter
28	LOC_Os06g37320	expressed protein	gene	expressed protein	chr6	22037357	22040273	-	five_prime_UTR,CDS,three_prime_UTR,promoter
28	LOC_Os04g39400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23264895	23271050	-	CDS
28	LOC_Os10g17910	OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr10	8985162	8986337	+	CDS,promoter
28	LOC_Os09g18100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	11092660	11095911	-	CDS,downstream
28	LOC_Os07g32910	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	19673075	19679440	-	five_prime_UTR,CDS,downstream
28	LOC_Os06g03170	hypothetical protein	gene	hypothetical protein	chr6	1182443	1191439	-	CDS
28	LOC_Os08g32180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19956065	19957678	+	CDS,promoter,downstream
28	LOC_Os04g03190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1339140	1344634	+	CDS
28	LOC_Os08g15910	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	9690170	9691545	+	CDS,promoter,downstream
28	LOC_Os12g16740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9588426	9590054	+	CDS,promoter,downstream
28	LOC_Os05g34380	cytochrome P450, putative	gene	cytochrome P450, putative	chr5	20316939	20318593	+	CDS,downstream
28	LOC_Os10g18940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9572592	9576570	-	CDS,promoter,downstream
28	LOC_Os12g33420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20173315	20174323	-	CDS
28	LOC_Os03g33160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18964878	18968199	-	CDS,promoter,downstream
28	LOC_Os05g03800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	1686848	1693947	+	CDS
28	LOC_Os10g34880	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr10	18536394	18541489	+	CDS,promoter,downstream
28	LOC_Os01g68220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	39646440	39652613	+	CDS,downstream
28	LOC_Os09g23100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	13645494	13649716	+	CDS,downstream
28	LOC_Os04g31080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	18405917	18410152	+	CDS,downstream
28	LOC_Os09g12890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7418056	7423674	-	CDS,promoter,downstream
28	LOC_Os07g18680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11037008	11039390	-	CDS,promoter,downstream
28	LOC_Os04g10210	hypothetical protein	gene	hypothetical protein	chr4	5514219	5516652	-	CDS
28	LOC_Os01g53830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	30945304	30946559	-	CDS,downstream
28	LOC_Os07g05984	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2898180	2900200	+	CDS,promoter,downstream
28	LOC_Os12g10310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5442275	5446785	+	CDS,promoter,downstream
28	LOC_Os03g37790	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr3	20952496	20956305	+	CDS,promoter
28	LOC_Os12g19450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11296872	11299519	+	CDS
28	LOC_Os05g12650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	7261578	7264926	+	CDS
28	LOC_Os09g08450	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	gene	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	chr9	4407658	4410662	+	CDS,three_prime_UTR,downstream
28	LOC_Os08g16240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9898457	9904344	-	CDS,promoter,downstream
28	LOC_Os12g21510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	12090620	12098057	-	CDS,downstream
28	LOC_Os11g01700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	377352	381272	+	CDS,downstream
28	LOC_Os10g24150	zinc knuckle family protein, expressed	gene	zinc knuckle family protein, expressed	chr10	12298228	12302698	-	CDS,promoter,downstream
28	LOC_Os09g11750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6567790	6570126	+	CDS
28	LOC_Os12g19940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11617178	11619435	+	CDS,promoter,downstream
28	LOC_Os12g28220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16661083	16667899	+	CDS,promoter,downstream
28	LOC_Os10g24480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12497258	12499986	+	CDS,downstream
28	LOC_Os01g28970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16223903	16225704	-	CDS,three_prime_UTR,promoter
28	LOC_Os04g29650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17472948	17477664	+	CDS,downstream
28	LOC_Os01g44020	hypothetical protein	gene	hypothetical protein	chr1	25219097	25220098	+	CDS,promoter
28	LOC_Os01g73380	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	42526833	42530801	-	CDS,promoter
28	LOC_Os01g34360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18946307	18947646	-	CDS
28	LOC_Os01g35730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19790831	19793769	+	CDS,promoter,downstream
28	LOC_Os02g33970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	20235705	20237471	+	CDS,promoter
28	LOC_Os05g20039	hypothetical protein	gene	hypothetical protein	chr5	11716540	11718147	+	CDS,promoter,downstream
28	LOC_Os11g22100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12225070	12227637	+	CDS,promoter
28	LOC_Os04g50192	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	29761468	29765520	-	CDS,promoter
28	LOC_Os09g16420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10041143	10041733	+	CDS,promoter,downstream
28	LOC_Os12g33850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20377286	20381921	-	CDS,promoter,downstream
28	LOC_Os06g11880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	6315295	6318626	+	CDS,downstream
28	LOC_Os12g17750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10161115	10164039	-	CDS,promoter,downstream
28	LOC_Os03g39594	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	21987475	21988542	-	CDS,promoter,downstream
28	LOC_Os04g19010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10555734	10556021	-	CDS,promoter,downstream
28	LOC_Os07g12840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	7357214	7361313	+	CDS,promoter,downstream
28	LOC_Os01g26224	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14860031	14869199	+	CDS,downstream
28	LOC_Os12g31900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	19183811	19185238	-	CDS,promoter
28	LOC_Os03g32930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18825885	18829587	-	CDS,downstream
28	LOC_Os11g22336	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12338528	12342285	-	CDS,promoter,downstream
28	LOC_Os06g36130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21144090	21145268	+	CDS,promoter,downstream
28	LOC_Os12g08510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4313138	4319736	-	CDS,promoter,downstream
28	LOC_Os04g12310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6787269	6793924	-	CDS,promoter
28	LOC_Os07g24040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13627219	13634088	-	CDS
28	LOC_Os06g30040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17298425	17303590	+	CDS,downstream
28	LOC_Os02g44140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	26715097	26716403	-	CDS,promoter,downstream
28	LOC_Os07g10750	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr7	5833686	5835588	+	CDS,downstream
28	LOC_Os12g28940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17107099	17110719	+	CDS,promoter,downstream
28	LOC_Os02g48260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	29535247	29538443	-	CDS
28	LOC_Os03g39500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21935705	21940308	-	CDS,promoter,downstream
28	LOC_Os12g27160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15937808	15940036	+	CDS,promoter,downstream
28	LOC_Os04g11910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	6523988	6531020	+	CDS
28	LOC_Os04g08440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4528666	4534819	-	CDS
28	LOC_Os03g33050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18908942	18911832	+	CDS,promoter,downstream
28	LOC_Os03g29085	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16517778	16521626	+	CDS
28	LOC_Os11g15150	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr11	8532176	8534064	+	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os08g33870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21198173	21202141	-	CDS,promoter
28	LOC_Os04g14430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8075354	8077863	+	CDS,promoter
28	LOC_Os10g24320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12389466	12391006	-	CDS,promoter,downstream
28	LOC_Os12g17804	hypothetical protein	gene	hypothetical protein	chr12	10191478	10193824	-	three_prime_UTR,promoter,downstream
28	LOC_Os05g04430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	2039297	2043292	-	CDS,promoter
28	LOC_Os12g29060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17199000	17202620	-	CDS,promoter,downstream
28	LOC_Os10g10670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	5909501	5912924	-	CDS,promoter,downstream
28	LOC_Os05g10610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	5780187	5782403	+	CDS,promoter,downstream
28	LOC_Os02g20010	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	11779222	11785227	+	CDS,promoter,downstream
28	LOC_Os06g35010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	20359901	20361245	-	CDS
28	LOC_Os04g26610	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	15512408	15514542	+	five_prime_UTR
28	LOC_Os09g18110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11096695	11099159	-	CDS,promoter,downstream
28	LOC_Os02g13120	expressed protein	gene	expressed protein	chr2	6976262	6976817	+	CDS,promoter,downstream
28	LOC_Os12g09350	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr12	4903456	4906785	+	CDS
28	LOC_Os01g31430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17185875	17189057	-	CDS,promoter,downstream
28	LOC_Os12g15080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8603218	8604111	+	CDS,promoter,downstream
28	LOC_Os02g17230	flavin monooxygenase, putative	gene	flavin monooxygenase, putative	chr2	9877603	9879274	+	CDS,promoter,downstream
28	LOC_Os04g19480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10838098	10840206	-	CDS,downstream
28	LOC_Os10g03130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1320985	1322841	-	CDS,promoter,downstream
28	LOC_Os08g18740	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	11186668	11191962	+	CDS,promoter,downstream
28	LOC_Os05g30360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17544082	17545090	-	CDS
28	LOC_Os11g20760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12007954	12013822	-	CDS,downstream
28	LOC_Os11g44290	hypothetical protein	gene	hypothetical protein	chr11	26295638	26295907	-	CDS,promoter
28	LOC_Os10g08080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4390646	4393860	+	CDS,promoter,downstream
28	LOC_Os09g08224	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4260796	4266702	+	CDS,downstream
28	LOC_Os02g19830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11616651	11621236	+	CDS,promoter
28	LOC_Os03g36300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20132546	20136044	-	CDS,promoter,downstream
28	LOC_Os06g16950	hypothetical protein	gene	hypothetical protein	chr6	9821442	9823910	-	CDS,promoter,downstream
28	LOC_Os07g24790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14090386	14093462	-	CDS,promoter,downstream
28	LOC_Os06g34760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20202046	20208199	-	CDS
28	LOC_Os01g24420	expressed protein	gene	expressed protein	chr1	13764205	13771160	+	CDS,promoter
28	LOC_Os07g18820	hypothetical protein	gene	hypothetical protein	chr7	11145279	11147833	+	CDS,promoter,downstream
28	LOC_Os06g11470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6073936	6074916	+	CDS,promoter,downstream
28	LOC_Os11g18550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10451071	10454383	+	CDS,promoter,downstream
28	LOC_Os07g30910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18294074	18299804	-	CDS,promoter,downstream
28	LOC_Os11g14650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8248739	8257588	+	CDS,promoter,downstream
28	LOC_Os02g40330	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	24403440	24408215	-	three_prime_UTR,five_prime_UTR
28	LOC_Os04g19420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10810253	10812812	-	CDS,downstream
28	LOC_Os10g42470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22825155	22828511	+	CDS,promoter,downstream
28	LOC_Os02g22230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13259734	13260701	-	CDS,promoter,downstream
28	LOC_Os01g11450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	6162187	6165385	-	CDS,promoter
28	LOC_Os05g08160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4446894	4450070	+	CDS,promoter,downstream
28	LOC_Os04g27160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	15875409	15876653	-	CDS,promoter,downstream
28	LOC_Os03g27484	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15769108	15771821	-	CDS,downstream
28	LOC_Os10g01020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	27689	35752	-	CDS,promoter,downstream
28	LOC_Os01g22890	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	12860703	12864925	+	CDS,downstream
28	LOC_Os06g34590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20117370	20119153	-	CDS,promoter,downstream
28	LOC_Os01g25688	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14561214	14563655	-	CDS,promoter,downstream
28	LOC_Os01g09490	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	4839354	4844339	+	CDS,downstream
28	LOC_Os01g49080	hypothetical protein	gene	hypothetical protein	chr1	28208068	28209910	+	CDS,promoter,downstream
28	LOC_Os10g06300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3237262	3241887	+	CDS,promoter
28	LOC_Os02g25380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14787834	14790925	-	CDS,promoter
28	LOC_Os08g04950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2528832	2534707	-	CDS,promoter,downstream
28	LOC_Os02g26180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	15363708	15366588	+	CDS,downstream
28	LOC_Os12g42630	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr12	26464577	26465743	-	CDS,downstream
28	LOC_Os09g24150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14340178	14341852	-	CDS,promoter,downstream
28	LOC_Os06g35380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20623892	20626350	+	CDS,downstream
28	LOC_Os01g35390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19571943	19575675	-	CDS,promoter
28	LOC_Os06g35260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20558050	20559937	+	CDS,promoter,downstream
28	LOC_Os11g42260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24990442	24992382	-	CDS,promoter,downstream
28	LOC_Os04g19070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10577431	10578141	+	CDS,promoter,downstream
28	LOC_Os08g28380	expressed protein	gene	expressed protein	chr8	17309268	17310077	+	CDS,downstream
28	LOC_Os08g03200	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	1476540	1483912	-	CDS
28	LOC_Os12g14640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8364611	8370112	+	CDS,promoter,downstream
28	LOC_Os12g31990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19250994	19252838	-	CDS,promoter,downstream
28	LOC_Os02g18050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10479058	10480447	+	CDS,promoter,downstream
28	LOC_Os01g37160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20754311	20755352	+	CDS,downstream
28	LOC_Os08g11260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6618715	6621940	+	CDS,downstream
28	LOC_Os12g25040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14363510	14371840	-	CDS,promoter,downstream
28	LOC_Os12g23790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13513014	13517266	+	CDS,promoter,downstream
28	LOC_Os05g20500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12032014	12032715	-	CDS,promoter,downstream
28	LOC_Os07g06920	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	3379635	3383086	-	CDS
28	LOC_Os06g45290	pollen allergen, putative, expressed	gene	pollen allergen, putative, expressed	chr6	27376711	27377475	-	three_prime_UTR,promoter
28	LOC_Os05g45800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26465099	26471251	-	CDS
28	LOC_Os02g04980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2352125	2357015	+	CDS,downstream
28	LOC_Os07g20400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11773602	11774359	-	CDS,promoter,downstream
28	LOC_Os04g20720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11605080	11609263	+	CDS,promoter,downstream
28	LOC_Os08g26300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16036614	16039049	+	CDS
28	LOC_Os11g34520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19756052	19759638	-	CDS,promoter,downstream
28	LOC_Os12g12060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6607455	6608453	-	CDS,promoter,downstream
28	LOC_Os06g17900	disease resistance protein RPM1, putative	gene	disease resistance protein RPM1, putative	chr6	10386510	10389466	+	CDS,promoter
28	LOC_Os03g34190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19463792	19470592	+	CDS,promoter,downstream
28	LOC_Os06g34200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19921057	19922261	-	CDS,downstream
28	LOC_Os10g14130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7686020	7687849	-	CDS,downstream
28	LOC_Os06g31750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18440222	18442791	-	CDS,promoter
28	LOC_Os10g33030	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	17227134	17228431	-	CDS,promoter
28	LOC_Os05g30610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17670048	17675766	-	CDS,promoter,downstream
28	LOC_Os10g01210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	133090	134781	+	CDS,promoter,downstream
28	LOC_Os05g15030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8517081	8522188	+	CDS,promoter,downstream
28	LOC_Os03g39570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	21968217	21971660	-	CDS,downstream
28	LOC_Os02g55220	carboxyl-terminal proteinase, putative	gene	carboxyl-terminal proteinase, putative	chr2	33815753	33817887	-	CDS,promoter,downstream
28	LOC_Os07g45830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27348372	27355468	+	CDS,promoter,downstream
28	LOC_Os10g31020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	16120882	16124214	-	CDS,promoter,downstream
28	LOC_Os01g23144	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13009862	13011813	-	CDS,promoter,downstream
28	LOC_Os02g17960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	10407372	10415109	+	CDS
28	LOC_Os04g16570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9002718	9009147	-	CDS,promoter,downstream
28	LOC_Os12g05450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2492295	2498687	-	CDS,downstream
28	LOC_Os05g13820	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	7682900	7683775	-	CDS,promoter
28	LOC_Os08g03740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	1775134	1776142	+	CDS
28	LOC_Os08g16140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9839955	9843984	+	CDS,downstream
28	LOC_Os06g26100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15270078	15274065	-	CDS,downstream
28	LOC_Os05g37280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	21750408	21753598	-	CDS,downstream
28	LOC_Os11g35170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20161802	20163058	-	CDS,promoter,downstream
28	LOC_Os09g14800	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	8811485	8817640	+	CDS
28	LOC_Os02g19600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	11445412	11446907	-	CDS,promoter,downstream
28	LOC_Os05g27220	hypothetical protein	gene	hypothetical protein	chr5	15768743	15770810	+	CDS,promoter
28	LOC_Os03g29290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	16674932	16678586	-	CDS,promoter,downstream
28	LOC_Os04g34110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	20502096	20506408	+	CDS,promoter
28	LOC_Os04g07170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3800027	3808384	+	CDS,promoter,downstream
28	LOC_Os04g04990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	2412027	2415516	+	CDS,downstream
28	LOC_Os05g14160	hypothetical protein	gene	hypothetical protein	chr5	7909572	7915622	+	CDS
28	LOC_Os04g29660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17478103	17480298	-	CDS,promoter
28	LOC_Os04g53900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	31936908	31939621	-	CDS,promoter,downstream
28	LOC_Os02g40160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24301479	24302840	-	CDS
28	LOC_Os10g24840	hypothetical protein	gene	hypothetical protein	chr10	12700799	12701372	-	CDS,promoter
28	LOC_Os09g02920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1371217	1373733	+	CDS,promoter,downstream
28	LOC_Os05g31310	hypothetical protein	gene	hypothetical protein	chr5	18140233	18140714	-	CDS,promoter,downstream
28	LOC_Os10g06420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3298062	3298637	-	CDS,promoter,downstream
28	LOC_Os11g24650	hypothetical protein	gene	hypothetical protein	chr11	13597580	13598293	+	CDS,promoter,downstream
28	LOC_Os01g34760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19167257	19168942	-	CDS,promoter,downstream
28	LOC_Os03g42170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	23459117	23459779	-	CDS,promoter,downstream
28	LOC_Os04g53480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	31658054	31661806	-	CDS
28	LOC_Os06g20800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12000888	12004536	-	CDS
28	LOC_Os10g01350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	210297	213198	+	CDS,promoter,downstream
28	LOC_Os10g20930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10525305	10529148	-	CDS,promoter,downstream
28	LOC_Os01g37410	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	20882092	20885766	-	CDS,promoter,downstream
28	LOC_Os06g24790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14554133	14557764	+	CDS,promoter
28	LOC_Os06g33950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19769809	19773453	-	CDS,promoter,downstream
28	LOC_Os07g41500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24867635	24872209	+	CDS,downstream
28	LOC_Os06g40260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	23979278	23983699	+	CDS,promoter,downstream
28	LOC_Os01g45330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25726042	25733869	-	CDS
28	LOC_Os01g03200	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr1	1259851	1261083	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os12g30410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18220082	18223258	-	CDS,promoter,downstream
28	LOC_Os07g11260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6203554	6210051	+	CDS,promoter,downstream
28	LOC_Os12g39570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	24369302	24374170	-	CDS
28	LOC_Os04g51540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30345030	30351184	-	CDS
28	LOC_Os07g26220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15083936	15088339	-	CDS,promoter,downstream
28	LOC_Os05g07500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4007179	4012885	-	CDS,downstream
28	LOC_Os01g37380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20868919	20871802	+	CDS,downstream
28	LOC_Os11g27770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15521916	15523578	-	CDS,promoter,downstream
28	LOC_Os11g42330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25020404	25023330	-	CDS,promoter,downstream
28	LOC_Os01g62520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	36206820	36209604	+	CDS,promoter
28	LOC_Os04g11710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6413857	6414722	+	CDS,promoter
28	LOC_Os03g31430	terpene synthase, N-terminal domain containing protein	gene	terpene synthase, N-terminal domain containing protein	chr3	17898143	17904899	-	CDS,promoter
28	LOC_Os03g26400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15086941	15089865	-	CDS,promoter,downstream
28	LOC_Os08g11420	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr8	6696467	6698896	+	CDS,promoter
28	LOC_Os04g16350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8881136	8884240	-	CDS,promoter,downstream
28	LOC_Os04g19180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10643642	10644559	-	CDS,promoter,downstream
28	LOC_Os12g04810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2050022	2055918	+	CDS,promoter,downstream
28	LOC_Os10g01790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	520186	523733	-	CDS,promoter
28	LOC_Os04g49080	rRNA 2-O-methyltransferase fibrillarin, putative	gene	rRNA 2-O-methyltransferase fibrillarin, putative	chr4	29074039	29074942	+	CDS,downstream
28	LOC_Os04g07490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3976335	3980544	-	CDS,promoter,downstream
28	LOC_Os01g32250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17666141	17671427	+	CDS,promoter,downstream
28	LOC_Os02g35490	MLO domain containing protein, putative, expressed	gene	MLO domain containing protein, putative, expressed	chr2	21324602	21329757	-	CDS,three_prime_UTR
28	LOC_Os10g13690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7443393	7450436	+	CDS,promoter
28	LOC_Os05g39270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	22965596	22971617	+	CDS,promoter,downstream
28	LOC_Os10g33010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	17208979	17215100	-	CDS,promoter
28	LOC_Os07g23040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13001642	13003012	-	CDS,promoter,downstream
28	LOC_Os02g11665	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	5995202	5999429	+	three_prime_UTR,promoter
28	LOC_Os01g64050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37200207	37203367	+	CDS,promoter,downstream
28	LOC_Os08g17220	uncharacterized PE-PGRS family protein PE_PGRS54 precursor, putative	gene	uncharacterized PE-PGRS family protein PE_PGRS54 precursor, putative	chr8	10545532	10546056	+	CDS,promoter,downstream
28	LOC_Os02g29880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17764546	17767870	+	CDS
28	LOC_Os04g20300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11347363	11348463	+	CDS,promoter,downstream
28	LOC_Os09g22150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13405171	13408303	-	CDS
28	LOC_Os09g14740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8754595	8757530	-	CDS,promoter,downstream
28	LOC_Os10g09580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	5185954	5193620	-	CDS,downstream
28	LOC_Os02g38700	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr2	23386480	23390994	-	CDS
28	LOC_Os11g43150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25568197	25570810	+	CDS,promoter,downstream
28	LOC_Os12g19640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11447868	11451396	+	CDS,promoter,downstream
28	LOC_Os05g15060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8551253	8553707	+	CDS,downstream
28	LOC_Os09g03150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1508667	1509201	+	CDS,promoter,downstream
28	LOC_Os01g34250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18878659	18883071	+	CDS,promoter,downstream
28	LOC_Os12g33340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20137307	20140248	-	CDS,promoter,downstream
28	LOC_Os09g09580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5166148	5168064	-	CDS,promoter,downstream
28	LOC_Os12g27730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	16349666	16353605	-	CDS
28	LOC_Os06g27950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15854843	15857764	-	CDS,promoter
28	LOC_Os03g31530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17958320	17962581	-	CDS,promoter,downstream
28	LOC_Os08g27610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16825508	16828107	-	CDS,promoter,downstream
28	LOC_Os09g25520	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	15303466	15310899	-	CDS,promoter
28	LOC_Os09g29584	OsWAK84 - OsWAK receptor-like  protein OsWAK-RLP, expressed	gene	OsWAK84 - OsWAK receptor-like  protein OsWAK-RLP, expressed	chr9	17986173	17995612	-	CDS,three_prime_UTR,promoter
28	LOC_Os02g16920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9644117	9645204	+	CDS,downstream
28	LOC_Os02g23870	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	13817762	13823594	+	CDS,promoter
28	LOC_Os05g17160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9828830	9830825	+	CDS,promoter,downstream
28	LOC_Os04g03620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1576147	1579492	-	CDS,promoter
28	LOC_Os10g26220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13511383	13514221	-	CDS,promoter,downstream
28	LOC_Os12g25100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14412283	14415749	+	CDS,promoter
28	LOC_Os03g59970	hypothetical protein	gene	hypothetical protein	chr3	34109621	34111904	-	CDS,downstream
28	LOC_Os07g14250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8115951	8120501	+	CDS,promoter,downstream
28	LOC_Os01g05030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	2363720	2366918	+	CDS
28	LOC_Os11g32200	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	18551473	18553509	-	CDS
28	LOC_Os08g31150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19246930	19254467	-	CDS,promoter,downstream
28	LOC_Os04g38170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22527144	22529740	+	CDS,downstream
28	LOC_Os04g19590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10896100	10906611	+	CDS,promoter,downstream
28	LOC_Os04g19160	hypothetical protein	gene	hypothetical protein	chr4	10635454	10636323	+	CDS,promoter,downstream
28	LOC_Os09g06390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3009380	3014065	+	CDS
28	LOC_Os02g21790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12946349	12949208	-	CDS,promoter,downstream
28	LOC_Os12g04620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	1955881	1959402	+	CDS
28	LOC_Os08g33760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21113651	21118002	+	CDS,downstream
28	LOC_Os08g16090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9809264	9812496	+	CDS,promoter,downstream
28	LOC_Os05g09270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	5174367	5175592	+	CDS,promoter,downstream
28	LOC_Os04g50000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29633599	29637954	-	CDS
28	LOC_Os11g15680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8883088	8885135	+	CDS,promoter,downstream
28	LOC_Os02g24730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14335798	14341916	-	CDS,promoter,downstream
28	LOC_Os07g26080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14964975	14967291	-	CDS,promoter,downstream
28	LOC_Os04g16640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9047225	9048181	-	CDS,promoter,downstream
28	LOC_Os12g13250	hypothetical protein	gene	hypothetical protein	chr12	7368013	7368703	-	CDS,promoter,downstream
28	LOC_Os08g30470	hypothetical protein	gene	hypothetical protein	chr8	18749585	18751013	-	CDS,promoter
28	LOC_Os04g06220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	3220725	3226155	+	CDS,downstream
28	LOC_Os06g20730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11940384	11943630	+	CDS,promoter,downstream
28	LOC_Os10g19890	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	9863406	9867044	+	CDS
28	LOC_Os08g28450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17357058	17360792	-	CDS,promoter,downstream
28	LOC_Os10g37620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20059992	20062595	+	CDS
28	LOC_Os03g32700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18733794	18736365	+	CDS,promoter,downstream
28	LOC_Os04g14040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7829228	7832065	+	CDS,promoter,downstream
28	LOC_Os09g36410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	21007532	21010930	+	CDS,promoter
28	LOC_Os05g44792	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	25980372	25986846	-	CDS,promoter
28	LOC_Os04g49100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	29083333	29087323	+	CDS,promoter,downstream
28	LOC_Os06g32820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19083262	19089172	-	CDS,downstream
28	LOC_Os06g24690	hypothetical protein	gene	hypothetical protein	chr6	14494583	14496814	-	CDS,promoter,downstream
28	LOC_Os09g26430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	15973480	15978873	-	CDS,downstream
28	LOC_Os05g29174	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17080538	17081602	-	CDS,promoter
28	LOC_Os12g28470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16818213	16824393	-	CDS,promoter,downstream
28	LOC_Os09g02040	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	737417	742730	-	CDS,downstream
28	LOC_Os07g19020	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	11260198	11261800	+	CDS,promoter,downstream
28	LOC_Os10g07114	expressed protein	gene	expressed protein	chr10	3739857	3742887	-	CDS,three_prime_UTR,promoter
28	LOC_Os08g11570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6771587	6777448	+	CDS,promoter,downstream
28	LOC_Os05g48540	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	27754198	27754458	+	CDS,promoter,downstream
28	LOC_Os10g42202	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	22642466	22647754	-	CDS,downstream
28	LOC_Os11g21840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12079036	12082369	+	CDS,promoter,downstream
28	LOC_Os01g21360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11933289	11936459	-	CDS,promoter,downstream
28	LOC_Os04g24920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14348791	14352143	+	CDS,downstream
28	LOC_Os02g25760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15082039	15086444	-	CDS,promoter
28	LOC_Os10g13590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	7374672	7376120	+	CDS,promoter,downstream
28	LOC_Os05g16850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9601589	9606139	-	CDS,promoter,downstream
28	LOC_Os02g49100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30020386	30024038	-	CDS,downstream
28	LOC_Os10g07552	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4061873	4066720	+	CDS,downstream
28	LOC_Os02g25480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	14869579	14873608	+	CDS,promoter,downstream
28	LOC_Os02g21760	hypothetical protein	gene	hypothetical protein	chr2	12936339	12936895	+	CDS,promoter,downstream
28	LOC_Os02g42100	hypothetical protein	gene	hypothetical protein	chr2	25300038	25303925	-	CDS
28	LOC_Os01g20170	hypothetical protein	gene	hypothetical protein	chr1	11471443	11474042	+	CDS
28	LOC_Os05g04970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2406440	2409381	+	CDS,promoter,downstream
28	LOC_Os07g06630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	3229793	3235997	+	CDS,downstream
28	LOC_Os01g56340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	32465448	32468218	-	CDS
28	LOC_Os01g57670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	33342611	33345826	+	CDS
28	LOC_Os08g18820	zinc knuckle family protein	gene	zinc knuckle family protein	chr8	11222779	11232245	+	CDS,promoter,downstream
28	LOC_Os06g31880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18520369	18521229	+	CDS,promoter
28	LOC_Os04g26690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15561801	15567056	-	CDS
28	LOC_Os11g23070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12811284	12815638	+	CDS,promoter,downstream
28	LOC_Os12g12990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7191306	7196005	+	CDS,downstream
28	LOC_Os06g25060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14661249	14663020	-	CDS,promoter
28	LOC_Os10g14900	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	7812851	7813258	-	CDS,promoter,downstream
28	LOC_Os12g18840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10913871	10918073	+	CDS,promoter,downstream
28	LOC_Os02g13040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6906296	6907364	+	CDS,downstream
28	LOC_Os12g36360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22226753	22230339	-	CDS,promoter,downstream
28	LOC_Os12g35930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21918882	21923305	-	CDS
28	LOC_Os06g25880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15119831	15124853	-	CDS,promoter
28	LOC_Os11g25880	hypothetical protein	gene	hypothetical protein	chr11	14286601	14289917	+	CDS,promoter
28	LOC_Os06g22590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13135918	13139116	-	CDS,promoter,downstream
28	LOC_Os04g49020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29037774	29042276	+	CDS
28	LOC_Os08g14340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	8597252	8601493	+	CDS,promoter,downstream
28	LOC_Os08g11350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6676978	6677451	+	CDS,promoter,downstream
28	LOC_Os02g46240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	28192256	28196533	-	CDS
28	LOC_Os03g43280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	24128049	24131741	-	CDS,promoter,downstream
28	LOC_Os11g37880	stripe rust resistance protein Yr10, putative, expressed	gene	stripe rust resistance protein Yr10, putative, expressed	chr11	21985507	21992437	+	CDS
28	LOC_Os01g63170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	36609734	36613870	+	CDS,promoter
28	LOC_Os06g41250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24683276	24689295	+	CDS
28	LOC_Os04g05980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3092736	3094950	-	CDS,promoter,downstream
28	LOC_Os02g35680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	21440709	21441186	-	CDS,promoter
28	LOC_Os09g23930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14270171	14272231	-	CDS,promoter,downstream
28	LOC_Os12g33650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20282322	20284525	+	CDS,promoter,downstream
28	LOC_Os04g08210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4358556	4364006	-	CDS,downstream
28	LOC_Os09g09670	hypothetical protein	gene	hypothetical protein	chr9	5213964	5214838	+	CDS,downstream
28	LOC_Os08g10540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6188770	6193191	-	CDS,promoter
28	LOC_Os06g25320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14826596	14833294	-	CDS,promoter
28	LOC_Os01g37420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20892620	20895757	+	CDS,downstream
28	LOC_Os03g07030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3582717	3588872	-	CDS
28	LOC_Os04g50188	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29760821	29761156	-	CDS,promoter
28	LOC_Os02g29920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	17786702	17788467	+	CDS,promoter,downstream
28	LOC_Os12g27550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16217169	16218224	-	CDS,promoter,downstream
28	LOC_Os12g09420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	4932786	4936184	-	CDS,promoter
28	LOC_Os12g20270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11825746	11832383	+	CDS,promoter,downstream
28	LOC_Os06g49910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	30211916	30217093	-	CDS,promoter,downstream
28	LOC_Os04g53790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	31867228	31872673	-	CDS
28	LOC_Os07g18500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10944396	10949111	-	CDS,promoter,downstream
28	LOC_Os04g51470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	30301997	30309260	+	CDS,promoter
28	LOC_Os02g25730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	15060425	15061791	+	CDS,promoter,downstream
28	LOC_Os05g18050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10380106	10383538	-	CDS,promoter,downstream
28	LOC_Os12g28800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17018718	17021756	-	CDS,downstream
28	LOC_Os09g29720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	18068119	18071439	-	CDS,downstream
28	LOC_Os09g06600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3132719	3135097	-	CDS,promoter,downstream
28	LOC_Os11g29450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16626401	16629316	-	CDS,promoter,downstream
28	LOC_Os09g16610	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	10191709	10192095	+	CDS,promoter,downstream
28	LOC_Os09g23390	hypothetical protein	gene	hypothetical protein	chr9	13900842	13901812	-	CDS,promoter
28	LOC_Os08g19870	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr8	11903336	11905797	-	CDS,promoter,downstream
28	LOC_Os11g40950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	24050853	24054185	+	CDS
28	LOC_Os03g05400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2663574	2665630	-	CDS,downstream
28	LOC_Os12g37300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	22858126	22864084	+	CDS
28	LOC_Os07g11390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6262297	6265316	+	CDS,promoter,downstream
28	LOC_Os03g63000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35614963	35617136	-	CDS,downstream
28	LOC_Os04g41010	hypothetical protein	gene	hypothetical protein	chr4	24150405	24150623	-	CDS,downstream
28	LOC_Os09g24060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14309261	14311089	-	CDS,promoter,downstream
28	LOC_Os11g39250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	22902447	22907477	-	CDS
28	LOC_Os06g50697	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	30679329	30679929	-	CDS,promoter
28	LOC_Os02g24090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13946598	13953675	-	CDS,downstream
28	LOC_Os02g25740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	15062233	15066902	+	CDS,promoter,downstream
28	LOC_Os07g14240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8114515	8115701	+	CDS,promoter,downstream
28	LOC_Os03g20240	hypothetical protein	gene	hypothetical protein	chr3	11431685	11432050	+	CDS,promoter,downstream
28	LOC_Os10g24040	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr10	12245663	12246732	+	CDS,promoter
28	LOC_Os10g16870	zinc knuckle family protein	gene	zinc knuckle family protein	chr10	8334877	8338605	+	CDS,downstream
28	LOC_Os02g25120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14580080	14582017	-	CDS,promoter,downstream
28	LOC_Os03g62810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35526444	35529610	+	CDS,downstream
28	LOC_Os05g16780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9551469	9557427	-	CDS,promoter,downstream
28	LOC_Os11g47879	unknown	gene	unknown	chr11	28357732	28358077	-	CDS,promoter,downstream
28	LOC_Os02g11650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5983252	5986466	+	CDS,promoter,downstream
28	LOC_Os10g33220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	17351605	17358956	+	CDS,downstream
28	LOC_Os12g11110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5979777	5983896	+	CDS,promoter
28	LOC_Os10g24770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12665498	12667294	-	CDS,promoter,downstream
28	LOC_Os12g22570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12734730	12737474	-	CDS,promoter,downstream
28	LOC_Os11g19620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11302781	11305288	+	CDS,promoter,downstream
28	LOC_Os05g26430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15307479	15312528	-	CDS,downstream
28	LOC_Os01g16570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9410310	9411329	+	CDS,promoter,downstream
28	LOC_Os03g32880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18805744	18807089	+	CDS,promoter,downstream
28	LOC_Os05g31320	hypothetical protein	gene	hypothetical protein	chr5	18142560	18145145	+	CDS,promoter,downstream
28	LOC_Os06g31480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18314921	18321635	+	CDS,promoter
28	LOC_Os01g35560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19671478	19674970	-	CDS,promoter,downstream
28	LOC_Os12g19610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11434329	11439643	+	CDS,promoter,downstream
28	LOC_Os11g44410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	26394362	26400102	-	CDS
28	LOC_Os03g41790	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23206522	23208769	+	CDS,promoter,downstream
28	LOC_Os03g41780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23199664	23205867	+	CDS,promoter,downstream
28	LOC_Os04g30700	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	18181725	18184676	+	CDS,promoter,downstream
28	LOC_Os11g39890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23309716	23310926	+	CDS,promoter
28	LOC_Os05g09180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5130492	5135924	-	CDS,promoter,downstream
28	LOC_Os07g39670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	23773734	23777975	+	CDS,downstream
28	LOC_Os03g30080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	17151082	17155898	+	CDS,promoter
28	LOC_Os02g47820	hypothetical protein	gene	hypothetical protein	chr2	29247356	29249090	+	CDS,promoter
28	LOC_Os08g18140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11118492	11122301	+	CDS,promoter
28	LOC_Os06g21710	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	12548752	12552502	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os10g20590	hypothetical protein	gene	hypothetical protein	chr10	10305663	10307427	+	CDS,promoter,downstream
28	LOC_Os07g18530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10963794	10967138	-	CDS,promoter
28	LOC_Os03g13780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	7457616	7463790	-	CDS,downstream
28	LOC_Os03g23110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13359730	13365739	-	CDS
28	LOC_Os10g02660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	1039982	1045877	-	CDS,promoter
28	LOC_Os09g23480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13952727	13957796	-	CDS,downstream
28	LOC_Os04g19380	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	10779656	10783757	-	CDS,promoter,downstream
28	LOC_Os05g45620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26375624	26380285	+	CDS,downstream
28	LOC_Os11g47050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27748265	27750139	+	CDS,promoter
28	LOC_Os12g24364	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13892665	13899322	+	CDS,promoter,downstream
28	LOC_Os07g17480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10318693	10323097	-	CDS
28	LOC_Os12g17360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9938586	9942053	+	CDS,promoter,downstream
28	LOC_Os07g15410	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	8904562	8911260	-	CDS,downstream
28	LOC_Os11g04620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1962165	1964246	+	CDS,promoter
28	LOC_Os03g26390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15080515	15086652	+	CDS,downstream
28	LOC_Os04g21390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12079054	12081821	-	CDS,promoter
28	LOC_Os05g18970	hypothetical protein	gene	hypothetical protein	chr5	11003618	11006193	-	CDS,promoter,downstream
28	LOC_Os11g43100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25537136	25538485	+	CDS,promoter,downstream
28	LOC_Os12g11780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6387607	6390834	-	CDS
28	LOC_Os08g35980	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	22680896	22681779	-	CDS,promoter
28	LOC_Os02g29730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17673908	17682009	+	CDS,downstream
28	LOC_Os07g19430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11490419	11491093	+	CDS,promoter
28	LOC_Os04g56870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33715921	33718139	-	CDS,promoter,downstream
28	LOC_Os02g14270	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	7826841	7830822	-	CDS,promoter,downstream
28	LOC_Os06g47190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28610401	28611962	-	CDS,promoter
28	LOC_Os04g38240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	22568176	22573992	-	CDS,downstream
28	LOC_Os11g44780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26629718	26633260	-	CDS,promoter,downstream
28	LOC_Os07g18910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11202919	11203999	-	CDS,promoter,downstream
28	LOC_Os10g19326	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9782056	9785756	+	CDS,promoter
28	LOC_Os02g43440	hypothetical protein	gene	hypothetical protein	chr2	26208407	26209406	-	CDS
28	LOC_Os03g06280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	3147576	3148106	+	CDS,promoter,downstream
28	LOC_Os08g26260	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr8	16006083	16008923	+	five_prime_UTR,CDS,downstream
28	LOC_Os10g19830	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr10	9815683	9818987	-	CDS,promoter
28	LOC_Os04g16540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8989098	8992059	+	CDS,promoter,downstream
28	LOC_Os05g08310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4535659	4542041	-	CDS,promoter,downstream
28	LOC_Os11g40470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23677381	23683325	-	CDS
28	LOC_Os04g54250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	32119709	32121508	-	CDS
28	LOC_Os10g32630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	17020337	17023234	-	CDS
28	LOC_Os01g19930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11311956	11312987	-	CDS,promoter,downstream
28	LOC_Os10g12570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7011574	7021051	+	CDS,promoter,downstream
28	LOC_Os10g23880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12174368	12180704	-	CDS,promoter,downstream
28	LOC_Os12g19840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11566359	11570473	-	CDS,promoter
28	LOC_Os05g18880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10963856	10965785	+	CDS,downstream
28	LOC_Os09g06450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3033999	3039037	-	CDS,promoter,downstream
28	LOC_Os09g10410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5689795	5691618	+	CDS,promoter,downstream
28	LOC_Os08g25600	hypothetical protein	gene	hypothetical protein	chr8	15572960	15575770	+	CDS,downstream
28	LOC_Os04g23080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13110841	13113301	+	CDS,promoter
28	LOC_Os08g27570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16802132	16806144	-	CDS,promoter
28	LOC_Os07g18620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11000555	11004241	-	CDS
28	LOC_Os04g19530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10863678	10864536	-	CDS,promoter,downstream
28	LOC_Os01g31920	hypothetical protein	gene	hypothetical protein	chr1	17481280	17485045	+	CDS,downstream
28	LOC_Os12g19580	photosynthetic reaction center protein, putative	gene	photosynthetic reaction center protein, putative	chr12	11409304	11415742	+	CDS,downstream
28	LOC_Os07g45660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27260810	27263750	-	CDS,promoter,downstream
28	LOC_Os04g06280	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3260335	3273454	+	CDS,promoter
28	LOC_Os08g10970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6465948	6467396	+	CDS,promoter,downstream
28	LOC_Os05g08670	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr5	4750013	4752928	+	CDS,downstream
28	LOC_Os05g24950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14379179	14382107	+	CDS,promoter,downstream
28	LOC_Os04g48590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28773413	28775352	-	CDS,promoter,downstream
28	LOC_Os12g34170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20684496	20685080	-	CDS,promoter,downstream
28	LOC_Os04g27710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16203564	16207221	+	CDS,promoter
28	LOC_Os11g18420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10391086	10392735	-	CDS,promoter,downstream
28	LOC_Os12g29910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17850222	17852393	+	CDS,promoter,downstream
28	LOC_Os05g07340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3900741	3906912	-	CDS
28	LOC_Os07g19370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11459998	11466755	+	CDS,promoter,downstream
28	LOC_Os08g27920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17017862	17019930	+	CDS,promoter,downstream
28	LOC_Os10g10640	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	5892611	5897596	+	CDS,three_prime_UTR,downstream
28	LOC_Os01g21536	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12042764	12048960	-	CDS,promoter,downstream
28	LOC_Os01g34750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19164889	19166274	+	CDS,promoter,downstream
28	LOC_Os07g43610	hypothetical protein	gene	hypothetical protein	chr7	26105276	26108270	+	CDS,promoter
28	LOC_Os10g17340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8657388	8663943	+	CDS,promoter,downstream
28	LOC_Os10g19064	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9641576	9644595	-	CDS,downstream
28	LOC_Os06g25210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14747716	14753279	-	CDS,promoter,downstream
28	LOC_Os02g37730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22766193	22768389	+	CDS,promoter
28	LOC_Os11g44710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26569378	26579305	+	CDS,downstream
28	LOC_Os12g19750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11497231	11503094	+	CDS,promoter
28	LOC_Os08g29080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17799099	17803497	-	CDS,downstream
28	LOC_Os09g33590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	19817629	19821018	+	CDS
28	LOC_Os06g07110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	3395348	3400021	-	CDS,promoter
28	LOC_Os05g26300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15242672	15245389	-	CDS,downstream
28	LOC_Os06g23020	hypothetical protein	gene	hypothetical protein	chr6	13433832	13434940	-	CDS,promoter,downstream
28	LOC_Os10g16780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8285690	8288485	+	CDS,promoter,downstream
28	LOC_Os10g08014	white-brown complex homolog protein 11, putative, expressed	gene	white-brown complex homolog protein 11, putative, expressed	chr10	4343282	4349544	+	CDS,downstream
28	LOC_Os11g21970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12150572	12154837	-	CDS,promoter,downstream
28	LOC_Os10g26840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	14020923	14023103	-	CDS
28	LOC_Os05g36040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	21274483	21278171	+	CDS,promoter
28	LOC_Os12g22320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12598805	12605605	+	CDS,downstream
28	LOC_Os06g41080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24541392	24551972	+	CDS
28	LOC_Os12g08880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4594941	4597603	+	CDS,promoter,downstream
28	LOC_Os08g05450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	2894038	2901592	-	CDS
28	LOC_Os10g03340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1412002	1415346	-	CDS,promoter
28	LOC_Os06g15100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8557382	8561854	+	CDS,downstream
28	LOC_Os10g20490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10252187	10254486	-	CDS,promoter,downstream
28	LOC_Os08g18760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11197148	11198143	+	CDS,promoter,downstream
28	LOC_Os09g09060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4833514	4837691	-	CDS,promoter,downstream
28	LOC_Os06g22560	formyl transferase, putative	gene	formyl transferase, putative	chr6	13116697	13119471	-	CDS,promoter
28	LOC_Os03g33740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19286239	19289119	+	CDS,promoter,downstream
28	LOC_Os08g19010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	11348420	11349483	+	CDS,promoter,downstream
28	LOC_Os10g14260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7746120	7749860	-	CDS,promoter
28	LOC_Os12g20340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11873468	11876472	+	CDS,downstream
28	LOC_Os08g13490	hypothetical protein	gene	hypothetical protein	chr8	8026860	8029087	-	CDS,downstream
28	LOC_Os09g22260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13461060	13462659	-	CDS,promoter,downstream
28	LOC_Os08g31160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19254699	19255217	-	CDS,promoter,downstream
28	LOC_Os10g35412	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	18855658	18859911	-	CDS,promoter
28	LOC_Os02g32560	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	19271177	19273284	-	CDS,promoter,downstream
28	LOC_Os03g61910	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	35088151	35091577	-	three_prime_UTR
28	LOC_Os02g36640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	22115688	22121634	+	CDS,promoter,downstream
28	LOC_Os07g09990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5327195	5332061	+	CDS,downstream
28	LOC_Os08g41160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	25996422	26006138	-	CDS,downstream
28	LOC_Os12g30770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18447564	18450749	-	CDS,promoter
28	LOC_Os08g16280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9935375	9939805	-	CDS,promoter,downstream
28	LOC_Os08g19120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	11429331	11431633	+	CDS,promoter
28	LOC_Os03g32730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18747619	18749324	-	CDS,promoter
28	LOC_Os01g37660	hypothetical protein	gene	hypothetical protein	chr1	21064416	21064865	+	CDS,promoter,downstream
28	LOC_Os10g15270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8024182	8028146	+	CDS,promoter,downstream
28	LOC_Os11g44370	hypothetical protein	gene	hypothetical protein	chr11	26350928	26354140	-	CDS,promoter,downstream
28	LOC_Os11g20440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11822759	11825756	+	CDS
28	LOC_Os02g24320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14102758	14105867	-	CDS,promoter,downstream
28	LOC_Os04g07470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3963033	3966677	-	CDS,promoter,downstream
28	LOC_Os01g39850	histone-like transcription factor and archaeal histone, putative, expressed	gene	histone-like transcription factor and archaeal histone, putative, expressed	chr1	22473523	22475459	-	five_prime_UTR,CDS,downstream
28	LOC_Os10g29930	hypothetical protein	gene	hypothetical protein	chr10	15469510	15471471	-	CDS
28	LOC_Os05g21160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12443169	12444407	+	CDS,downstream
28	LOC_Os08g18780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11207045	11208886	+	CDS,promoter,downstream
28	LOC_Os03g43240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24110017	24111329	-	CDS,promoter,downstream
28	LOC_Os05g07560	expressed protein	gene	expressed protein	chr5	4043707	4047997	+	five_prime_UTR,promoter
28	LOC_Os04g29180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17125242	17127308	-	CDS,promoter
28	LOC_Os12g16750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9596037	9602586	+	CDS
28	LOC_Os10g07578	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4142473	4147019	+	CDS,promoter
28	LOC_Os09g04200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2206393	2208848	+	CDS
28	LOC_Os09g04920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2633641	2635533	+	CDS,promoter,downstream
28	LOC_Os08g11800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6919231	6925784	-	CDS
28	LOC_Os02g22340	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13334765	13335037	-	CDS,promoter,downstream
28	LOC_Os03g13260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7152380	7160368	+	CDS,promoter
28	LOC_Os10g05650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	2815321	2818600	-	CDS,promoter
28	LOC_Os09g07180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3517951	3521519	-	CDS,promoter,downstream
28	LOC_Os05g27130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15731809	15732798	-	CDS,downstream
28	LOC_Os07g42540	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr7	25455845	25456929	+	CDS,promoter,downstream
28	LOC_Os11g31210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17724800	17727121	-	CDS,promoter,downstream
28	LOC_Os12g28890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17073309	17076628	-	CDS,downstream
28	LOC_Os09g23250	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	13797350	13800103	+	CDS,downstream
28	LOC_Os05g18910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10978533	10981460	+	CDS,promoter,downstream
28	LOC_Os08g17930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10996761	10999680	+	CDS,promoter,downstream
28	LOC_Os05g40930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23944154	23945621	-	CDS,promoter,downstream
28	LOC_Os09g01090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	102353	102781	-	CDS,promoter,downstream
28	LOC_Os06g33230	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr6	19345423	19347228	-	CDS,promoter,downstream
28	LOC_Os09g24120	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14328874	14329627	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os08g25410	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	15453851	15458622	-	CDS,promoter
28	LOC_Os08g40300	expressed protein	gene	expressed protein	chr8	25509317	25515748	+	CDS,promoter,downstream
28	LOC_Os03g22300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	12775640	12782657	+	CDS,promoter,downstream
28	LOC_Os10g12660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7070762	7072858	-	CDS,downstream
28	LOC_Os10g17410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8704022	8708019	-	CDS,promoter,downstream
28	LOC_Os04g14500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	8105513	8107769	-	CDS,promoter,downstream
28	LOC_Os10g07300	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	3854511	3855623	-	five_prime_UTR,promoter,downstream
28	LOC_Os09g14170	hypothetical protein	gene	hypothetical protein	chr9	8384993	8385551	-	CDS,promoter,downstream
28	LOC_Os08g17910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10986388	10991229	+	CDS,promoter,downstream
28	LOC_Os11g15560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8805338	8812081	+	CDS,promoter,downstream
28	LOC_Os08g37540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	23771122	23774047	-	CDS,promoter,downstream
28	LOC_Os11g23120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12843657	12845655	+	CDS,promoter,downstream
28	LOC_Os03g22930	hypothetical protein	gene	hypothetical protein	chr3	13252586	13253119	+	CDS,promoter
28	LOC_Os10g07000	hypothetical protein	gene	hypothetical protein	chr10	3640048	3640720	+	CDS,promoter,downstream
28	LOC_Os05g46910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	27084478	27086653	+	CDS,promoter,downstream
28	LOC_Os07g33210	expressed protein	gene	expressed protein	chr7	19837583	19841595	+	CDS
28	LOC_Os09g14770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8784747	8788644	-	CDS,downstream
28	LOC_Os07g01270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	159839	171912	+	CDS
28	LOC_Os04g28560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16735903	16741573	-	CDS
28	LOC_Os11g29560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16683471	16686398	+	CDS,promoter,downstream
28	LOC_Os02g45429	unknown	gene	unknown	chr2	27638381	27638680	-	CDS,downstream
28	LOC_Os11g26490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14722309	14724470	+	CDS,promoter,downstream
28	LOC_Os03g39590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21977685	21982117	-	CDS,promoter
28	LOC_Os02g45140	hypothetical protein	gene	hypothetical protein	chr2	27372081	27373796	-	CDS,downstream
28	LOC_Os04g12420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6853778	6859121	+	CDS,promoter,downstream
28	LOC_Os04g29320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17226124	17230582	-	CDS,downstream
28	LOC_Os11g22380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12372252	12372698	-	CDS,promoter,downstream
28	LOC_Os09g07220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3531749	3533473	+	CDS,promoter,downstream
28	LOC_Os11g21870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12091808	12094935	+	CDS,downstream
28	LOC_Os12g40700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	25160060	25164527	-	CDS,promoter
28	LOC_Os02g24690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14315756	14319332	+	CDS,promoter,downstream
28	LOC_Os08g39174	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	24739090	24755775	-	CDS,promoter
28	LOC_Os04g06490	hypothetical protein	gene	hypothetical protein	chr4	3400216	3401234	-	CDS,promoter
28	LOC_Os01g33324	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	18357982	18362234	+	CDS,promoter,downstream
28	LOC_Os02g27510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	16276799	16281075	-	CDS,promoter,downstream
28	LOC_Os11g20750	hypothetical protein	gene	hypothetical protein	chr11	12003624	12005302	-	CDS,promoter
28	LOC_Os07g30530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18060427	18064215	+	CDS
28	LOC_Os06g36950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	21764817	21767012	-	CDS,promoter,downstream
28	LOC_Os03g34096	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19428717	19430024	-	CDS,promoter,downstream
28	LOC_Os12g33510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20219934	20220885	-	CDS,promoter,downstream
28	LOC_Os06g37630	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr6	22279908	22285497	-	CDS,downstream
28	LOC_Os08g12710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7532129	7534260	-	CDS,promoter,downstream
28	LOC_Os01g71624	expressed protein	gene	expressed protein	chr1	41494664	41497613	+	three_prime_UTR
28	LOC_Os01g60400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34932859	34933568	+	CDS,promoter
28	LOC_Os07g01430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	271067	277026	+	CDS,promoter
28	LOC_Os07g26360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15147499	15152608	-	CDS,promoter,downstream
28	LOC_Os08g18800	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11214417	11216650	+	CDS,promoter,downstream
28	LOC_Os02g32900	expressed protein	gene	expressed protein	chr2	19534364	19536307	-	CDS,promoter,downstream
28	LOC_Os08g36710	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	23158254	23160781	-	CDS,downstream
28	LOC_Os03g38076	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21134155	21136444	-	CDS,promoter
28	LOC_Os05g15270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8656592	8662939	-	CDS,promoter,downstream
28	LOC_Os02g31930	hypothetical protein	gene	hypothetical protein	chr2	18862451	18862808	-	CDS,promoter,downstream
28	LOC_Os05g07520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4016643	4022313	-	CDS,promoter,downstream
28	LOC_Os07g39490	hypothetical protein	gene	hypothetical protein	chr7	23664031	23664823	+	CDS,downstream
28	LOC_Os05g11940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	6794005	6797658	-	CDS,promoter
28	LOC_Os09g09820	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	5319875	5322838	+	five_prime_UTR,three_prime_UTR,promoter
28	LOC_Os03g36590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20287300	20289029	+	CDS,promoter,downstream
28	LOC_Os12g04670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	1977277	1982071	-	CDS
28	LOC_Os07g32690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19518481	19525310	+	CDS,promoter
28	LOC_Os02g14620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	8067718	8070678	+	CDS,promoter,downstream
28	LOC_Os02g35570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	21394498	21396414	-	CDS,downstream
28	LOC_Os05g18100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10410309	10416145	+	CDS,promoter,downstream
28	LOC_Os04g21760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12303381	12306119	-	CDS,promoter,downstream
28	LOC_Os04g16630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9036924	9043944	-	CDS,promoter,downstream
28	LOC_Os10g24760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12662500	12664185	+	CDS,promoter,downstream
28	LOC_Os04g12350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6808274	6811999	-	CDS,promoter,downstream
28	LOC_Os02g24550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14218708	14223921	+	CDS,promoter,downstream
28	LOC_Os06g14570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8202785	8206594	+	CDS,promoter,downstream
28	LOC_Os07g17910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10593382	10599109	-	CDS,promoter
28	LOC_Os11g35160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20157177	20159598	+	CDS,promoter,downstream
28	LOC_Os07g37385	LTPL109 - Protease inhibitor/seed storage/LTP family protein precursor	gene	LTPL109 - Protease inhibitor/seed storage/LTP family protein precursor	chr7	22403287	22404216	-	CDS,promoter,downstream
28	LOC_Os11g32060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18422566	18427458	-	CDS,downstream
28	LOC_Os01g57810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33434825	33438031	-	CDS,promoter,downstream
28	LOC_Os06g03340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	1275113	1278630	+	CDS
28	LOC_Os02g26280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15423739	15429165	+	CDS,promoter
28	LOC_Os04g09470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5066022	5071719	-	CDS,promoter,downstream
28	LOC_Os12g23230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13130721	13136810	-	CDS,promoter
28	LOC_Os06g14680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8255352	8258661	+	CDS,downstream
28	LOC_Os12g29530	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	17583182	17590737	-	CDS,promoter
28	LOC_Os01g23120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12999381	13002729	+	CDS,downstream
28	LOC_Os09g10450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5708713	5711556	-	CDS,promoter,downstream
28	LOC_Os07g12180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6814324	6817074	-	CDS,downstream
28	LOC_Os09g08020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4127221	4132305	-	CDS,promoter,downstream
28	LOC_Os04g08540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4620519	4629756	-	CDS,promoter,downstream
28	LOC_Os03g29650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	16902536	16909097	+	CDS,promoter,downstream
28	LOC_Os10g37468	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	19979573	19983946	-	CDS,promoter
28	LOC_Os12g25030	hypothetical protein	gene	hypothetical protein	chr12	14357916	14359631	+	CDS,promoter,downstream
28	LOC_Os11g12240	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	6822885	6836424	+	three_prime_UTR,downstream
28	LOC_Os04g32640	hypothetical protein	gene	hypothetical protein	chr4	19497823	19499030	-	CDS,promoter,downstream
28	LOC_Os09g11030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6124907	6127820	+	CDS,promoter,downstream
28	LOC_Os01g39540	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	22276832	22278266	-	CDS,promoter
28	LOC_Os09g05110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2742554	2743470	-	CDS,promoter
28	LOC_Os04g06120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3177463	3178665	-	CDS,promoter,downstream
28	LOC_Os11g20460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11837591	11844210	+	CDS,promoter
28	LOC_Os11g25970	hypothetical protein	gene	hypothetical protein	chr11	14352030	14355541	+	CDS,promoter,downstream
28	LOC_Os06g13430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	7387963	7392345	+	CDS
28	LOC_Os02g24680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14309077	14314123	-	CDS,promoter,downstream
28	LOC_Os11g04150	major facilitator superfamily antiporter, putative, expressed	gene	major facilitator superfamily antiporter, putative, expressed	chr11	1680094	1687100	-	CDS,three_prime_UTR,promoter
28	LOC_Os12g18510	hypothetical protein	gene	hypothetical protein	chr12	10698358	10701432	-	CDS,promoter,downstream
28	LOC_Os05g39490	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	23110566	23114007	-	CDS,promoter
28	LOC_Os02g27690	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr2	16400342	16402242	+	CDS,promoter
28	LOC_Os11g10260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	5565265	5572798	-	CDS,downstream
28	LOC_Os06g38010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22470429	22477154	+	CDS,promoter,downstream
28	LOC_Os08g11000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6479857	6481815	-	CDS,promoter,downstream
28	LOC_Os01g27030	hypothetical protein	gene	hypothetical protein	chr1	15069319	15069839	+	CDS,promoter,downstream
28	LOC_Os11g15450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8750994	8755064	+	CDS,promoter
28	LOC_Os06g14250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	7944053	7950099	-	CDS,downstream
28	LOC_Os06g01420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	250421	256376	+	CDS,downstream
28	LOC_Os12g29310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	17364397	17368687	-	CDS,promoter,downstream
28	LOC_Os04g19200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10660214	10661699	-	CDS,downstream
28	LOC_Os12g26990	hypothetical protein	gene	hypothetical protein	chr12	15807415	15808508	-	CDS,promoter
28	LOC_Os11g23920	hypothetical protein	gene	hypothetical protein	chr11	13090645	13091551	-	CDS,promoter,downstream
28	LOC_Os03g32970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18848759	18851447	+	CDS,promoter,downstream
28	LOC_Os05g26220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15198163	15201450	+	CDS,downstream
28	LOC_Os09g25400	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	15229072	15229649	+	CDS,promoter
28	LOC_Os05g08150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4436519	4442626	-	CDS,promoter,downstream
28	LOC_Os10g10840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6013924	6016865	-	CDS
28	LOC_Os08g20720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12447398	12453070	-	CDS,promoter
28	LOC_Os10g20330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10155538	10156583	+	CDS,promoter,downstream
28	LOC_Os12g29150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17251718	17254843	-	CDS,downstream
28	LOC_Os04g05140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2549084	2552208	-	CDS,promoter,downstream
28	LOC_Os03g24140	hypothetical protein	gene	hypothetical protein	chr3	13702435	13703019	+	CDS,downstream
28	LOC_Os03g39200	hypothetical protein	gene	hypothetical protein	chr3	21766564	21767860	-	CDS,promoter,downstream
28	LOC_Os03g37180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20596668	20599404	+	CDS,promoter,downstream
28	LOC_Os01g16830	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr1	9598027	9601427	+	CDS
28	LOC_Os03g05360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	2623254	2635900	-	CDS,promoter
28	LOC_Os12g19650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11454289	11456566	+	CDS,promoter,downstream
28	LOC_Os04g18884	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10491714	10495351	-	CDS
28	LOC_Os07g17720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10460789	10466615	-	CDS,promoter,downstream
28	LOC_Os08g02240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	783477	789484	-	CDS
28	LOC_Os07g45900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27389690	27395434	-	CDS,promoter
28	LOC_Os05g26410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15292437	15298089	-	CDS,promoter,downstream
28	LOC_Os12g33450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20182903	20189518	-	CDS,promoter,downstream
28	LOC_Os06g22620	hypothetical protein	gene	hypothetical protein	chr6	13151633	13153263	-	CDS,promoter,downstream
28	LOC_Os01g36730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20390038	20393212	-	CDS,promoter,downstream
28	LOC_Os07g16540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9700980	9702285	-	CDS,promoter
28	LOC_Os03g37194	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20600061	20607106	-	CDS,promoter,downstream
28	LOC_Os12g29630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17665149	17668715	-	CDS,downstream
28	LOC_Os11g25850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14269190	14271680	-	CDS
28	LOC_Os04g01410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	287975	291155	-	CDS,promoter,downstream
28	LOC_Os10g19090	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9652707	9653063	-	CDS,promoter
28	LOC_Os05g44520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25842127	25844947	-	CDS,promoter
28	LOC_Os09g22080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13363375	13365589	+	CDS,promoter,downstream
28	LOC_Os11g04260	hypothetical protein	gene	hypothetical protein	chr11	1755947	1757800	-	CDS,promoter
28	LOC_Os08g08950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	5200020	5205082	+	CDS,promoter
28	LOC_Os11g41760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24604771	24610866	-	CDS,promoter
28	LOC_Os06g24960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14621848	14624451	-	CDS,promoter,downstream
28	LOC_Os11g37170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21478418	21484891	+	CDS,promoter,downstream
28	LOC_Os12g35150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21351603	21352868	-	CDS,promoter,downstream
28	LOC_Os08g12020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7053856	7071114	+	CDS,promoter
28	LOC_Os12g22370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12629083	12631650	+	CDS,promoter,downstream
28	LOC_Os07g12190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6818203	6819297	-	CDS,promoter,downstream
28	LOC_Os10g07562	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4090327	4093841	+	CDS,promoter
28	LOC_Os11g02780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	920120	926078	-	CDS
28	LOC_Os02g25040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14511623	14516990	-	CDS,promoter,downstream
28	LOC_Os08g23200	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr8	13989420	13992995	+	CDS,promoter,downstream
28	LOC_Os11g09760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5206772	5210119	-	CDS,promoter,downstream
28	LOC_Os08g12470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7372569	7379410	-	CDS,promoter
28	LOC_Os01g21210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11830581	11838029	+	CDS,promoter,downstream
28	LOC_Os05g08890	transposable element protein, putative, containing Pfam profile: PF03108, MuDR	gene	transposable element protein, putative, containing Pfam profile: PF03108, MuDR	chr5	4913827	4920832	+	CDS,downstream
28	LOC_Os04g19190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10646614	10648496	-	CDS,promoter,downstream
28	LOC_Os11g24350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	13408223	13415789	-	CDS,promoter
28	LOC_Os02g21720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	12908783	12912373	-	CDS,downstream
28	LOC_Os11g24330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	13394579	13396685	-	CDS,promoter
28	LOC_Os01g31420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17180657	17184811	+	CDS,promoter,downstream
28	LOC_Os08g08550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4930150	4936772	-	CDS,promoter,downstream
28	LOC_Os05g07400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3945410	3951117	+	CDS,promoter,downstream
28	LOC_Os10g11190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6214561	6221158	-	CDS,promoter,downstream
28	LOC_Os12g20430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11926783	11928230	+	CDS,downstream
28	LOC_Os12g22220	hypothetical protein	gene	hypothetical protein	chr12	12521663	12522202	+	CDS,promoter,downstream
28	LOC_Os06g14110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	7867467	7870699	+	CDS,downstream
28	LOC_Os01g32239	unknown	gene	unknown	chr1	17660832	17661804	+	CDS,promoter
28	LOC_Os07g18030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10671215	10673544	+	CDS,promoter,downstream
28	LOC_Os06g43290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	26011705	26015703	+	CDS
28	LOC_Os04g20650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11552934	11553359	-	CDS,promoter,downstream
28	LOC_Os12g29090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17219469	17220807	+	CDS,promoter
28	LOC_Os10g07594	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4185560	4188650	-	CDS,downstream
28	LOC_Os08g19720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11804771	11809945	-	CDS,promoter
28	LOC_Os01g35380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19569161	19571619	+	CDS,promoter,downstream
28	LOC_Os05g24190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	13912167	13916058	+	CDS,promoter
28	LOC_Os06g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1229749	1240848	+	CDS,promoter,downstream
28	LOC_Os04g14010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7821281	7821607	+	CDS,promoter,downstream
28	LOC_Os05g44710	hypothetical protein	gene	hypothetical protein	chr5	25931621	25934723	+	CDS,promoter,downstream
28	LOC_Os04g04430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2105323	2108625	-	CDS,promoter,downstream
28	LOC_Os07g11430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6290734	6292213	+	CDS,promoter
28	LOC_Os04g20630	nucleic acid binding protein, putative	gene	nucleic acid binding protein, putative	chr4	11535549	11538696	-	CDS,promoter,downstream
28	LOC_Os05g38900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	22754169	22755626	+	CDS,promoter,downstream
28	LOC_Os03g41624	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23141269	23145715	+	CDS,promoter,downstream
28	LOC_Os12g22330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12606131	12609233	-	CDS,promoter
28	LOC_Os05g15930	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	8984054	8990108	+	CDS,downstream
28	LOC_Os06g35550	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr6	20734928	20743699	-	CDS
28	LOC_Os11g43170	hypothetical protein	gene	hypothetical protein	chr11	25574533	25576109	+	CDS,promoter
28	LOC_Os08g23920	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	14470238	14472418	-	CDS,promoter,downstream
28	LOC_Os01g24640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13874820	13876277	+	CDS,downstream
28	LOC_Os01g23330	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	13101065	13107566	-	CDS,promoter
28	LOC_Os03g31520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17954947	17956931	-	CDS,promoter,downstream
28	LOC_Os06g18100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10538046	10540237	+	CDS
28	LOC_Os12g28570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16875741	16879439	+	CDS,promoter
28	LOC_Os05g02090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	620802	626218	+	CDS,promoter
28	LOC_Os10g13530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7335526	7342146	-	CDS,promoter,downstream
28	LOC_Os08g17180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10526074	10528035	+	CDS,promoter,downstream
28	LOC_Os04g07060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3687271	3693993	-	CDS,promoter,downstream
28	LOC_Os05g36060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	21292041	21298788	+	CDS
28	LOC_Os06g23170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13523541	13531870	+	CDS
28	LOC_Os08g13960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	8366124	8371822	-	CDS,downstream
28	LOC_Os04g13020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7175550	7178519	+	CDS,promoter,downstream
28	LOC_Os05g24200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13939526	13943934	+	CDS,promoter,downstream
28	LOC_Os05g09736	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	5520381	5526288	-	CDS
28	LOC_Os04g26310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15329555	15332790	+	CDS
28	LOC_Os07g42050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25170441	25173788	+	CDS,downstream
28	LOC_Os01g19920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11308421	11310827	-	CDS,promoter,downstream
28	LOC_Os06g31990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	18586282	18592806	-	CDS,downstream
28	LOC_Os06g15959	ligA, putative	gene	ligA, putative	chr6	9071635	9073786	+	CDS,promoter
28	LOC_Os01g03440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	1382646	1384084	+	CDS,downstream
28	LOC_Os05g19050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11055573	11061498	+	CDS
28	LOC_Os10g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12417305	12420005	+	CDS,promoter,downstream
28	LOC_Os04g07160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3795299	3798631	+	CDS,promoter,downstream
28	LOC_Os07g18180	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	10774377	10774943	-	CDS,promoter,downstream
28	LOC_Os08g32830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	20341009	20344296	-	CDS,promoter
28	LOC_Os07g25970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14901117	14903797	+	CDS,downstream
28	LOC_Os02g29410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	17459494	17467741	-	CDS,downstream
28	LOC_Os06g33240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	19352633	19354813	-	CDS,promoter,downstream
28	LOC_Os03g42530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23656716	23665786	+	CDS
28	LOC_Os02g28660	hypothetical protein	gene	hypothetical protein	chr2	16953627	16955752	+	CDS,downstream
28	LOC_Os04g12240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6746069	6755202	+	CDS,downstream
28	LOC_Os06g11950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6360090	6361250	+	CDS,promoter
28	LOC_Os05g13570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7529666	7532173	-	CDS,promoter
28	LOC_Os03g33260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19026245	19028492	-	CDS,promoter,downstream
28	LOC_Os11g31720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18130021	18135709	-	CDS
28	LOC_Os03g26890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15350311	15355510	-	CDS,promoter,downstream
28	LOC_Os05g08180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4462678	4464448	+	CDS,promoter,downstream
28	LOC_Os01g36020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19927998	19930904	-	CDS,promoter,downstream
28	LOC_Os03g46270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	26168535	26172796	+	CDS,downstream
28	LOC_Os10g11990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	6666807	6670878	-	CDS,downstream
28	LOC_Os05g20060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11728682	11730402	-	CDS,downstream
28	LOC_Os03g34102	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19430767	19432680	-	CDS,promoter,downstream
28	LOC_Os10g16460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8135893	8139600	+	CDS,downstream
28	LOC_Os01g24280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13677353	13678035	+	CDS,promoter,downstream
28	LOC_Os11g41180	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	24219756	24223854	+	CDS,downstream
28	LOC_Os07g06120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2966719	2969723	-	CDS,promoter,downstream
28	LOC_Os08g13610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8091817	8094742	+	CDS,promoter,downstream
28	LOC_Os08g40310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	25515990	25522337	-	CDS,promoter,downstream
28	LOC_Os10g24440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12464169	12466320	+	CDS,promoter,downstream
28	LOC_Os04g31180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18482734	18487045	+	CDS
28	LOC_Os04g15910	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr4	8628442	8631841	-	CDS,promoter
28	LOC_Os04g49810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	29509770	29512694	-	CDS,promoter,downstream
28	LOC_Os05g28590	hypothetical protein	gene	hypothetical protein	chr5	16678753	16681292	+	CDS,promoter,downstream
28	LOC_Os08g20110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12051935	12056413	+	CDS,promoter
28	LOC_Os02g25270	hypothetical protein	gene	hypothetical protein	chr2	14710698	14711495	-	CDS,promoter
28	LOC_Os09g21910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13259670	13260416	+	CDS,downstream
28	LOC_Os03g13420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7258462	7262529	-	CDS,promoter,downstream
28	LOC_Os10g38370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	20431481	20437502	+	CDS
28	LOC_Os03g41210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22917217	22921344	+	CDS,downstream
28	LOC_Os08g08640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	4989828	4995362	-	CDS
28	LOC_Os01g19080	ligA, putative	gene	ligA, putative	chr1	10781730	10782158	-	CDS,promoter
28	LOC_Os09g10890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5970976	5976219	+	CDS,promoter,downstream
28	LOC_Os01g20190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11479204	11484047	-	CDS,downstream
28	LOC_Os05g07780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	4191594	4193774	+	CDS
28	LOC_Os05g44000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25535301	25538745	+	CDS,promoter,downstream
28	LOC_Os04g15620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8488067	8491010	-	CDS,promoter,downstream
28	LOC_Os10g18670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9410748	9416901	-	CDS,promoter,downstream
28	LOC_Os06g25110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14693468	14696919	+	CDS
28	LOC_Os09g22050	hypothetical protein	gene	hypothetical protein	chr9	13353553	13355385	-	CDS,downstream
28	LOC_Os06g44990	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr6	27213547	27214813	+	CDS,promoter
28	LOC_Os11g36920	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	21313928	21315937	+	CDS,promoter
28	LOC_Os02g29680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17659062	17662119	-	CDS,promoter,downstream
28	LOC_Os02g06140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3065795	3070820	-	CDS
28	LOC_Os03g34200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19472762	19475608	+	CDS,promoter,downstream
28	LOC_Os11g24870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13712422	13716076	+	CDS,promoter
28	LOC_Os05g17080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9750741	9752304	+	CDS,promoter,downstream
28	LOC_Os02g24120	hypothetical protein	gene	hypothetical protein	chr2	13966737	13968675	-	CDS
28	LOC_Os02g33870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	20180414	20183719	-	CDS
28	LOC_Os01g63960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	37127378	37131727	+	CDS
28	LOC_Os01g48480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	27786881	27790082	+	CDS,promoter,downstream
28	LOC_Os09g04170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2194463	2196744	+	CDS,promoter,downstream
28	LOC_Os10g18294	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9224578	9231312	-	CDS,promoter,downstream
28	LOC_Os03g44600	hypothetical protein	gene	hypothetical protein	chr3	25109090	25109673	-	CDS,promoter
28	LOC_Os06g28310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16075347	16084871	+	CDS,downstream
28	LOC_Os05g33340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	19492118	19506688	-	CDS
28	LOC_Os03g21590	expressed protein	gene	expressed protein	chr3	12326353	12329295	-	CDS,downstream
28	LOC_Os05g08870	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	4899158	4903058	-	CDS,promoter
28	LOC_Os12g43260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26817317	26819936	-	CDS,promoter,downstream
28	LOC_Os12g24680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14128758	14135621	+	CDS
28	LOC_Os10g18210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9178912	9182693	+	CDS
28	LOC_Os08g10050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5824864	5827808	+	CDS,promoter,downstream
28	LOC_Os07g12990	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	7451447	7452487	+	CDS,promoter,downstream
28	LOC_Os05g17770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10211857	10214293	+	CDS,promoter,downstream
28	LOC_Os08g06150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3397131	3398264	+	CDS,downstream
28	LOC_Os02g58780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35908944	35915032	-	CDS
28	LOC_Os06g45880	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	27770299	27775101	+	CDS
28	LOC_Os02g19320	hypothetical protein	gene	hypothetical protein	chr2	11289886	11290579	+	CDS,promoter,downstream
28	LOC_Os05g32340	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	18792582	18796906	+	CDS,promoter
28	LOC_Os11g11800	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	6544117	6545094	-	CDS,promoter,downstream
28	LOC_Os06g23080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13453972	13456878	-	CDS,promoter,downstream
28	LOC_Os04g30190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	17845221	17850966	-	CDS
28	LOC_Os11g18961	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10800329	10803661	-	CDS,promoter
28	LOC_Os05g10250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5572231	5578876	+	CDS,promoter,downstream
28	LOC_Os03g41180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	22899371	22902466	+	CDS,downstream
28	LOC_Os08g31380	hypothetical protein	gene	hypothetical protein	chr8	19401566	19402517	-	CDS,downstream
28	LOC_Os02g13390	hypothetical protein	gene	hypothetical protein	chr2	7141810	7143857	-	CDS,promoter
28	LOC_Os06g37944	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22452163	22453181	+	CDS,promoter,downstream
28	LOC_Os08g28150	hypothetical protein	gene	hypothetical protein	chr8	17181621	17183202	-	CDS,promoter,downstream
28	LOC_Os04g21490	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	12140350	12141278	-	CDS,promoter,downstream
28	LOC_Os02g27320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	16091950	16096190	+	CDS,promoter,downstream
28	LOC_Os07g17530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10359758	10365511	+	CDS
28	LOC_Os08g12790	cytokinin inducible protein, putative	gene	cytokinin inducible protein, putative	chr8	7575911	7576909	+	CDS,promoter
28	LOC_Os01g57800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33427557	33434372	+	CDS,promoter,downstream
28	LOC_Os06g06310	hypothetical protein	gene	hypothetical protein	chr6	2928391	2930982	+	CDS
28	LOC_Os05g44730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25939683	25944233	+	CDS,promoter,downstream
28	LOC_Os12g15570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8895019	8899712	-	CDS,promoter,downstream
28	LOC_Os08g17194	unknown	gene	unknown	chr8	10533898	10538932	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os04g13560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7572551	7576014	-	CDS,promoter
28	LOC_Os04g09370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4981011	4982868	-	CDS,promoter,downstream
28	LOC_Os10g19310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9766819	9770069	-	CDS,downstream
28	LOC_Os09g02460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1017949	1021957	-	CDS,promoter,downstream
28	LOC_Os07g48000	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	28661840	28667204	-	CDS
28	LOC_Os05g09300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5197025	5201841	+	CDS,promoter,downstream
28	LOC_Os10g24430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12458580	12461339	+	CDS,promoter,downstream
28	LOC_Os12g25910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15023086	15028801	-	CDS,promoter,downstream
28	LOC_Os02g31060	hypothetical protein	gene	hypothetical protein	chr2	18550615	18550854	+	CDS,promoter,downstream
28	LOC_Os08g23910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14463106	14467521	-	CDS,promoter,downstream
28	LOC_Os11g15070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8476239	8479056	+	CDS,downstream
28	LOC_Os03g59810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	34049427	34053839	-	CDS,downstream
28	LOC_Os11g27360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	15277398	15278003	+	CDS,promoter,downstream
28	LOC_Os06g25300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14822524	14823993	-	CDS,promoter,downstream
28	LOC_Os10g24530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12517235	12520798	+	CDS,promoter,downstream
28	LOC_Os12g11820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6413899	6416255	-	CDS,promoter
28	LOC_Os03g43920	hypothetical protein	gene	hypothetical protein	chr3	24641345	24642684	+	CDS,promoter
28	LOC_Os09g13670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7986786	7990118	-	CDS,promoter
28	LOC_Os10g33190	expressed protein	gene	expressed protein	chr10	17318494	17322743	-	three_prime_UTR,promoter,downstream
28	LOC_Os12g38280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	23470534	23477041	+	CDS
28	LOC_Os05g12540	hypothetical protein	gene	hypothetical protein	chr5	7198994	7199365	-	CDS,promoter,downstream
28	LOC_Os03g36330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20149621	20152168	-	CDS,downstream
28	LOC_Os06g23320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13617970	13621420	+	CDS,downstream
28	LOC_Os03g27910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	16025352	16030794	+	CDS,downstream
28	LOC_Os03g49660	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	28273519	28277887	-	CDS
28	LOC_Os05g12550	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	7200068	7202651	-	CDS,promoter,downstream
28	LOC_Os01g22850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12837689	12839297	-	CDS,promoter,downstream
28	LOC_Os04g01220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	163785	168675	+	CDS,promoter
28	LOC_Os01g25890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14689788	14691584	+	CDS,promoter
28	LOC_Os07g27730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16174838	16178049	+	CDS,downstream
28	LOC_Os06g42230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25356471	25358930	+	CDS,promoter,downstream
28	LOC_Os02g21620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12839171	12846285	-	CDS,promoter
28	LOC_Os05g43220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	25071074	25075071	+	CDS
28	LOC_Os10g20940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10530912	10532447	-	CDS,promoter
28	LOC_Os12g24410	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	13922141	13929900	-	CDS
28	LOC_Os06g39090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23205641	23215431	-	CDS
28	LOC_Os09g25250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15118920	15122014	-	CDS,promoter,downstream
28	LOC_Os11g15440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8746933	8750720	+	CDS,promoter,downstream
28	LOC_Os12g05310	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	2365316	2381942	-	CDS
28	LOC_Os03g32499	expressed protein	gene	expressed protein	chr3	18578511	18597398	+	CDS,three_prime_UTR,downstream
28	LOC_Os03g05960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2974219	2975936	-	CDS,promoter,downstream
28	LOC_Os02g07280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3736136	3737851	+	CDS,promoter
28	LOC_Os02g25690	hypothetical protein	gene	hypothetical protein	chr2	15031863	15032301	+	CDS,promoter,downstream
28	LOC_Os04g34960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	21071121	21075502	-	CDS,promoter
28	LOC_Os07g33130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19782329	19785827	+	CDS
28	LOC_Os09g06890	BTB/POZ domain containing protein	gene	BTB/POZ domain containing protein	chr9	3302872	3306522	+	CDS,promoter,downstream
28	LOC_Os12g39760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	24515064	24518351	-	CDS,promoter
28	LOC_Os03g13320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7186599	7193407	+	CDS
28	LOC_Os11g12450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	6951872	6955510	-	CDS
28	LOC_Os12g18540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	10716503	10718683	+	CDS,promoter
28	LOC_Os06g35710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20837753	20844117	+	CDS
28	LOC_Os06g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13218145	13223409	-	CDS,promoter,downstream
28	LOC_Os04g19000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10550425	10553815	+	CDS,promoter,downstream
28	LOC_Os08g04860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2450472	2453704	-	CDS,promoter,downstream
28	LOC_Os06g40540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24164118	24166511	+	CDS,promoter,downstream
28	LOC_Os06g03180	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	1193479	1198549	+	CDS
28	LOC_Os01g64070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37209807	37216081	-	CDS,promoter,downstream
28	LOC_Os08g18930	hypothetical protein	gene	hypothetical protein	chr8	11281575	11285601	+	CDS
28	LOC_Os01g35420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19592864	19597212	+	CDS,promoter,downstream
28	LOC_Os01g28760	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16107434	16110895	+	CDS,promoter
28	LOC_Os05g20810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12212148	12213210	-	CDS,downstream
28	LOC_Os07g17950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10617751	10622475	-	CDS,downstream
28	LOC_Os07g24780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14085680	14087121	-	CDS,promoter,downstream
28	LOC_Os12g14050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7970017	7973194	-	CDS,promoter,downstream
28	LOC_Os10g21420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10898111	10899525	+	CDS
28	LOC_Os05g03290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	1332945	1336276	-	CDS,promoter
28	LOC_Os04g33800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	20298451	20302892	+	CDS,promoter
28	LOC_Os02g03160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	1252853	1257075	+	CDS,downstream
28	LOC_Os05g04790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2275473	2280023	+	CDS,promoter,downstream
28	LOC_Os03g43160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24077369	24080904	+	CDS,promoter,downstream
28	LOC_Os05g16020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9052292	9053167	+	CDS,promoter,downstream
28	LOC_Os05g18170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10444659	10447022	+	CDS,promoter,downstream
28	LOC_Os02g38380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	23194524	23200484	-	CDS,downstream
28	LOC_Os01g35140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19442234	19446784	-	CDS,downstream
28	LOC_Os10g32410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16922699	16923767	+	CDS,promoter,downstream
28	LOC_Os06g16870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9765795	9769481	+	CDS,promoter
28	LOC_Os10g01450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	267697	271855	+	CDS,promoter,downstream
28	LOC_Os11g12360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	6896539	6908571	-	CDS,downstream
28	LOC_Os06g31620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18375945	18381740	+	CDS,promoter
28	LOC_Os11g45470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27058377	27058847	+	CDS,downstream
28	LOC_Os08g01020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9186	13082	+	CDS,downstream
28	LOC_Os08g23020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13859304	13864881	+	CDS,promoter,downstream
28	LOC_Os11g18720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10595619	10599368	+	CDS,promoter
28	LOC_Os06g32100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18676621	18681195	+	CDS,promoter,downstream
28	LOC_Os06g28510	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	16207405	16210078	-	CDS,promoter
28	LOC_Os04g01420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	292884	293619	-	CDS,promoter,downstream
28	LOC_Os11g22130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12234955	12237143	-	CDS,promoter,downstream
28	LOC_Os02g11660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5987067	5993073	-	CDS,promoter,downstream
28	LOC_Os12g18600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	10743855	10747359	-	CDS,downstream
28	LOC_Os11g35690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20458810	20461723	+	CDS,promoter,downstream
28	LOC_Os09g09200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4921538	4922698	+	CDS,promoter,downstream
28	LOC_Os08g18130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11114938	11116367	+	CDS,promoter,downstream
28	LOC_Os11g42650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25212503	25226242	+	CDS,promoter,downstream
28	LOC_Os07g41014	glycosyl hydrolases family 17 protein	gene	glycosyl hydrolases family 17 protein	chr7	24533380	24539117	-	CDS
28	LOC_Os11g22220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12285814	12290362	-	CDS,promoter,downstream
28	LOC_Os06g31930	thionin precursor protein, putative, expressed	gene	thionin precursor protein, putative, expressed	chr6	18556903	18558036	-	three_prime_UTR,promoter
28	LOC_Os06g31556	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18354131	18355240	-	CDS
28	LOC_Os06g32270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18786482	18789700	-	CDS,promoter,downstream
28	LOC_Os01g13360	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed	gene	phosphatidylinositol 3- and 4-kinase family protein, putative, expressed	chr1	7442685	7446196	-	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os04g21620	hypothetical protein	gene	hypothetical protein	chr4	12223938	12224303	+	CDS,downstream
28	LOC_Os07g08010	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr7	4055338	4058068	-	CDS,downstream
28	LOC_Os08g39620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	25068065	25073879	-	CDS,downstream
28	LOC_Os12g14600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8335097	8336274	+	CDS,promoter
28	LOC_Os01g54160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	31143988	31149888	-	CDS,promoter
28	LOC_Os02g08340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	4427704	4431194	+	CDS
28	LOC_Os06g33820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19677774	19680839	+	CDS,downstream
28	LOC_Os03g05790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	2887804	2892595	+	CDS,downstream
28	LOC_Os05g32010	hypothetical protein	gene	hypothetical protein	chr5	18593646	18594083	+	CDS,promoter,downstream
28	LOC_Os07g18090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10699613	10704725	+	CDS,promoter
28	LOC_Os05g19180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11128481	11130534	-	CDS,promoter,downstream
28	LOC_Os09g15140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9182378	9185302	-	CDS,promoter
28	LOC_Os08g19990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	11968454	11971481	+	CDS
28	LOC_Os11g24460	hypothetical protein	gene	hypothetical protein	chr11	13483946	13486902	+	CDS,downstream
28	LOC_Os12g27400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16126660	16129579	-	CDS,downstream
28	LOC_Os10g24330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12391340	12392182	-	CDS,promoter,downstream
28	LOC_Os10g02200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	753268	753814	-	CDS,promoter
28	LOC_Os11g47190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	27860579	27866734	+	CDS
28	LOC_Os09g16860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10294411	10301773	+	CDS
28	LOC_Os01g38300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21478520	21479736	-	CDS,promoter,downstream
28	LOC_Os05g04730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	2233710	2237932	+	CDS,downstream
28	LOC_Os02g29740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17682433	17686377	-	CDS,promoter,downstream
28	LOC_Os01g32600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17873210	17876291	-	CDS,promoter,downstream
28	LOC_Os06g44560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26912011	26912337	+	CDS,downstream
28	LOC_Os08g05990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3253180	3255925	+	CDS,downstream
28	LOC_Os07g06365	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3094073	3100168	-	CDS,promoter
28	LOC_Os01g21980	hypothetical protein	gene	hypothetical protein	chr1	12338763	12339198	-	CDS,promoter,downstream
28	LOC_Os12g15160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8642456	8644535	-	CDS,promoter,downstream
28	LOC_Os11g12874	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	7303215	7310519	+	CDS,promoter
28	LOC_Os08g32230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19972157	19973071	-	CDS,promoter,downstream
28	LOC_Os05g32750	hypothetical protein	gene	hypothetical protein	chr5	19112738	19113495	-	CDS,promoter,downstream
28	LOC_Os03g31390	hypothetical protein	gene	hypothetical protein	chr3	17881700	17882427	-	CDS,promoter
28	LOC_Os02g07530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3898794	3901738	+	CDS,promoter,downstream
28	LOC_Os07g23630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	13350920	13352503	+	CDS,promoter
28	LOC_Os11g15170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	8539801	8548384	+	CDS
28	LOC_Os08g27180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16594868	16601546	+	CDS,downstream
28	LOC_Os02g24070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13937768	13939691	+	CDS,promoter
28	LOC_Os05g44700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25926886	25928555	-	CDS,promoter,downstream
28	LOC_Os07g36270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	21679827	21684067	-	CDS,promoter,downstream
28	LOC_Os12g14960	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	8559512	8560324	-	CDS,promoter,downstream
28	LOC_Os08g28310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17271505	17275075	-	CDS,downstream
28	LOC_Os04g11370	hypothetical protein	gene	hypothetical protein	chr4	6206483	6210238	+	CDS,promoter,downstream
28	LOC_Os12g35250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	21386916	21390586	+	CDS
28	LOC_Os02g25310	zinc knuckle family protein	gene	zinc knuckle family protein	chr2	14755685	14757928	-	CDS,promoter
28	LOC_Os05g41330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24148650	24155013	+	CDS
28	LOC_Os08g26290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16021500	16024832	-	CDS,promoter
28	LOC_Os10g18640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9380054	9381014	-	CDS,promoter,downstream
28	LOC_Os03g18650	hypothetical protein	gene	hypothetical protein	chr3	10449753	10450423	+	CDS,promoter
28	LOC_Os10g11660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6446407	6449401	-	CDS
28	LOC_Os01g03830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	1607984	1616905	+	CDS,promoter
28	LOC_Os08g12530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7413351	7417152	+	CDS,promoter
28	LOC_Os09g07270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3560254	3564646	-	CDS,promoter
28	LOC_Os08g25110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15240407	15246565	+	CDS,promoter
28	LOC_Os06g15870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9008482	9013616	-	CDS,promoter,downstream
28	LOC_Os11g15430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8737076	8740973	+	CDS,downstream
28	LOC_Os06g50320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	30456263	30462310	-	CDS,promoter,downstream
28	LOC_Os08g24960	hypothetical protein	gene	hypothetical protein	chr8	15130948	15131439	-	CDS,promoter,downstream
28	LOC_Os10g24720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12642138	12643346	+	CDS,promoter,downstream
28	LOC_Os05g17330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9933184	9935769	-	CDS,promoter,downstream
28	LOC_Os12g13550	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr12	7599451	7604327	+	CDS,three_prime_UTR,downstream
28	LOC_Os11g25380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14001006	14005232	+	CDS,promoter,downstream
28	LOC_Os02g09870	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	5094976	5098828	-	CDS,downstream
28	LOC_Os05g21170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12445024	12451179	-	CDS,promoter
28	LOC_Os02g18890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11026915	11029881	-	CDS,downstream
28	LOC_Os03g33070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	18921243	18921888	-	CDS,promoter,downstream
28	LOC_Os06g13250	hypothetical protein	gene	hypothetical protein	chr6	7292012	7295555	-	CDS,promoter,downstream
28	LOC_Os05g45010	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr5	26102189	26104828	+	CDS,promoter,downstream
28	LOC_Os07g13420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7693042	7697586	-	CDS,promoter
28	LOC_Os11g41480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24413694	24419584	+	CDS,promoter,downstream
28	LOC_Os09g09870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5357853	5364177	-	CDS,promoter,downstream
28	LOC_Os06g26140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15293147	15294511	+	CDS,downstream
28	LOC_Os12g21670	hypothetical protein	gene	hypothetical protein	chr12	12175397	12176061	+	CDS,promoter,downstream
28	LOC_Os06g24510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14364345	14368020	+	CDS,promoter,downstream
28	LOC_Os11g23060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12798022	12807345	+	CDS,downstream
28	LOC_Os08g30550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18799109	18811902	+	CDS,promoter
28	LOC_Os02g47260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	28832951	28836242	-	CDS,downstream
28	LOC_Os12g14430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8226238	8227338	-	CDS,promoter,downstream
28	LOC_Os02g28500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	16848626	16854965	+	CDS,promoter,downstream
28	LOC_Os08g05390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2838934	2841972	-	CDS,promoter,downstream
28	LOC_Os11g36110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20761077	20766164	+	CDS,promoter
28	LOC_Os09g15010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9034176	9040125	-	CDS,promoter
28	LOC_Os06g18810	hypothetical protein	gene	hypothetical protein	chr6	10679072	10682213	-	CDS
28	LOC_Os06g40240	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	23966711	23975390	+	CDS,downstream
28	LOC_Os10g02570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	969834	970929	-	CDS,promoter,downstream
28	LOC_Os09g22100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13381297	13388336	+	CDS,downstream
28	LOC_Os03g14480	hypothetical protein	gene	hypothetical protein	chr3	7862478	7863716	-	CDS,promoter,downstream
28	LOC_Os08g05000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	2562789	2564718	+	CDS,promoter
28	LOC_Os09g26230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15845063	15847398	-	CDS,downstream
28	LOC_Os03g33720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19275575	19277069	+	CDS,downstream
28	LOC_Os07g42270	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	25293780	25294604	-	CDS
28	LOC_Os09g02320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	952032	953641	-	CDS,promoter,downstream
28	LOC_Os01g12040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	6545714	6553267	+	CDS,downstream
28	LOC_Os01g01320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	156728	159941	-	CDS,downstream
28	LOC_Os12g39610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	24410223	24415808	-	CDS,promoter
28	LOC_Os08g27380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16714027	16715665	-	CDS,promoter
28	LOC_Os09g17220	hypothetical protein	gene	hypothetical protein	chr9	10569471	10569870	+	CDS,promoter,downstream
28	LOC_Os09g16080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9811121	9816623	+	CDS
28	LOC_Os05g20660	hypothetical protein	gene	hypothetical protein	chr5	12116137	12117574	-	CDS,promoter,downstream
28	LOC_Os08g06960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	3874757	3879236	+	CDS,downstream
28	LOC_Os05g25020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14426389	14429427	+	CDS,promoter
28	LOC_Os07g14710	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr7	8390749	8392571	+	CDS,promoter,downstream
28	LOC_Os08g05420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2858672	2864048	+	CDS,downstream
28	LOC_Os02g34330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	20536289	20537643	-	CDS,promoter,downstream
28	LOC_Os12g33660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20290208	20292898	+	CDS,promoter,downstream
28	LOC_Os08g08580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4957470	4961379	-	CDS,promoter
28	LOC_Os06g16230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9236954	9243111	-	CDS,promoter,downstream
28	LOC_Os05g15740	hypothetical protein	gene	hypothetical protein	chr5	8889711	8890237	+	CDS,downstream
28	LOC_Os06g22320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	12955392	12960183	-	CDS,promoter
28	LOC_Os08g18220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11164298	11169445	+	CDS,promoter,downstream
28	LOC_Os03g29864	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	17013272	17021446	-	CDS
28	LOC_Os02g29780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17714553	17719688	+	CDS,downstream
28	LOC_Os07g17810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10536533	10539154	-	CDS,promoter,downstream
28	LOC_Os03g52110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	29911693	29917489	-	CDS,promoter,downstream
28	LOC_Os01g57160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	33032559	33038412	+	CDS
28	LOC_Os07g17670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10430949	10432158	-	CDS,promoter
28	LOC_Os07g11340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6244968	6247216	-	CDS,downstream
28	LOC_Os07g20450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11809064	11810619	-	CDS,promoter,downstream
28	LOC_Os08g28760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17591035	17593877	+	CDS,promoter,downstream
28	LOC_Os04g13890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7745960	7750736	-	CDS,promoter,downstream
28	LOC_Os02g22610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	13474881	13478035	-	CDS,promoter,downstream
28	LOC_Os08g27900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17002447	17008109	+	CDS,promoter,downstream
28	LOC_Os05g20700	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	12136485	12137827	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os11g27740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15501293	15505309	+	CDS,promoter,downstream
28	LOC_Os06g13270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	7297666	7301171	-	CDS,promoter,downstream
28	LOC_Os06g15860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9005420	9006844	-	CDS,promoter,downstream
28	LOC_Os11g23230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12919861	12922833	-	CDS,promoter
28	LOC_Os11g39950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23340333	23346194	+	CDS,promoter
28	LOC_Os09g10420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5695108	5696468	-	CDS,promoter,downstream
28	LOC_Os08g32110	hypothetical protein	gene	hypothetical protein	chr8	19917822	19920661	+	CDS,downstream
28	LOC_Os04g24930	hypothetical protein	gene	hypothetical protein	chr4	14353654	14353920	-	CDS,promoter,downstream
28	LOC_Os01g24310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13697182	13700469	-	CDS,promoter,downstream
28	LOC_Os02g15430	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	8640325	8644849	-	CDS,promoter
28	LOC_Os05g19640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	11452200	11452523	+	CDS,promoter,downstream
28	LOC_Os06g25810	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	15075505	15080958	-	CDS,downstream
28	LOC_Os05g26170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15167394	15175519	-	CDS,promoter,downstream
28	LOC_Os12g13260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7369735	7371061	+	CDS,promoter
28	LOC_Os08g22900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13771986	13773679	-	CDS,promoter,downstream
28	LOC_Os08g03920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1865104	1865967	+	CDS,promoter,downstream
28	LOC_Os09g10130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5513058	5514138	+	CDS,promoter,downstream
28	LOC_Os03g28204	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	16228061	16235656	+	CDS,promoter,downstream
28	LOC_Os07g15060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	8628993	8630384	-	CDS,promoter,downstream
28	LOC_Os04g01840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	530880	533289	+	CDS,promoter,downstream
28	LOC_Os05g39780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23305421	23309659	-	CDS,promoter,downstream
28	LOC_Os04g03690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1624255	1626960	-	CDS
28	LOC_Os05g24220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	13952478	13954267	+	CDS,promoter
28	LOC_Os03g41740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23182096	23185946	+	CDS,promoter
28	LOC_Os03g63990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	36158920	36164428	+	CDS,promoter
28	LOC_Os06g27780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15730436	15731075	-	CDS,promoter
28	LOC_Os07g35430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	21184026	21187070	-	CDS,downstream
28	LOC_Os12g26650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15608885	15611533	+	CDS,promoter,downstream
28	LOC_Os03g46830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	26481123	26487170	-	CDS,promoter
28	LOC_Os08g17700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	10830966	10834603	-	CDS,promoter,downstream
28	LOC_Os08g12110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7127073	7132095	-	CDS,promoter,downstream
28	LOC_Os11g23980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	13127961	13129385	+	CDS,downstream
28	LOC_Os01g19980	hypothetical protein	gene	hypothetical protein	chr1	11357128	11358918	+	CDS
28	LOC_Os11g11320	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	6275573	6278091	-	CDS,promoter,downstream
28	LOC_Os01g07860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	3782691	3785243	-	CDS,downstream
28	LOC_Os06g28790	hypothetical protein	gene	hypothetical protein	chr6	16395084	16395893	-	CDS,promoter
28	LOC_Os11g18580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	10481918	10485656	+	CDS,promoter,downstream
28	LOC_Os06g21660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12498021	12499451	-	CDS,promoter
28	LOC_Os12g29320	hypothetical protein	gene	hypothetical protein	chr12	17370234	17372689	-	CDS,promoter,downstream
28	LOC_Os05g19310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11221792	11225375	+	CDS,promoter,downstream
28	LOC_Os05g51950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29750335	29753222	+	CDS,promoter,downstream
28	LOC_Os05g35890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	21224822	21228153	-	CDS,promoter
28	LOC_Os05g08200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4467384	4470423	-	CDS,promoter,downstream
28	LOC_Os02g14370	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	7882490	7890668	-	CDS
28	LOC_Os02g29940	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr2	17790935	17791576	-	CDS,promoter,downstream
28	LOC_Os10g17060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8474191	8475377	-	CDS,downstream
28	LOC_Os02g16900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9632201	9635253	-	CDS,promoter
28	LOC_Os11g43330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25677342	25680160	+	CDS,promoter,downstream
28	LOC_Os09g12040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6782925	6790685	+	CDS
28	LOC_Os03g37750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	20930196	20933547	-	CDS,promoter,downstream
28	LOC_Os05g37230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	21710518	21715069	-	CDS,downstream
28	LOC_Os03g16490	hypothetical protein	gene	hypothetical protein	chr3	9088715	9091378	-	CDS
28	LOC_Os12g14260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8112502	8118620	+	CDS,downstream
28	LOC_Os08g34180	hypothetical protein	gene	hypothetical protein	chr8	21422134	21426956	-	CDS,downstream
28	LOC_Os09g15380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9404038	9409805	+	CDS,promoter,downstream
28	LOC_Os09g16350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9991016	9994306	+	CDS,promoter
28	LOC_Os07g02600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	931326	937014	-	CDS
28	LOC_Os06g25190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14737326	14738270	-	CDS,promoter,downstream
28	LOC_Os12g22740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12824131	12828678	-	CDS,promoter,downstream
28	LOC_Os01g51130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	29368703	29375078	-	CDS,downstream
28	LOC_Os10g15130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7946370	7949330	-	CDS,promoter,downstream
28	LOC_Os09g06910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3324212	3331210	-	CDS
28	LOC_Os06g30670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17760839	17767043	-	CDS,promoter
28	LOC_Os04g09480	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	5074775	5079328	-	CDS
28	LOC_Os08g35170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	22163343	22168087	+	CDS,promoter,downstream
28	LOC_Os12g35460	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	21523971	21534835	+	CDS
28	LOC_Os01g33150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18252939	18254514	+	CDS,promoter,downstream
28	LOC_Os06g36550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21471521	21473456	-	CDS,promoter,downstream
28	LOC_Os09g08750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4609549	4614447	+	CDS,downstream
28	LOC_Os03g36740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20373850	20375195	-	CDS,promoter,downstream
28	LOC_Os02g09110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	4670863	4675567	+	CDS,promoter,downstream
28	LOC_Os11g24950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13745318	13748409	+	CDS,downstream
28	LOC_Os08g30600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18854112	18857821	-	CDS,downstream
28	LOC_Os10g15060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7898985	7903369	-	CDS,promoter,downstream
28	LOC_Os05g24360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14029405	14032990	-	CDS,promoter,downstream
28	LOC_Os03g31910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	18248236	18252795	+	CDS,downstream
28	LOC_Os09g07410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3681265	3686451	+	CDS,promoter,downstream
28	LOC_Os06g27610	hypothetical protein	gene	hypothetical protein	chr6	15620655	15623546	-	CDS,promoter,downstream
28	LOC_Os09g25230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15112451	15113440	-	CDS,downstream
28	LOC_Os06g24350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14243984	14250645	-	CDS,promoter
28	LOC_Os06g27990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15881630	15886247	+	CDS,downstream
28	LOC_Os01g61270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	35445956	35451913	+	CDS,promoter,downstream
28	LOC_Os04g20710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11596436	11597207	-	CDS,promoter,downstream
28	LOC_Os08g20480	OsFBO20 - F-box and other domain containing protein	gene	OsFBO20 - F-box and other domain containing protein	chr8	12284003	12292008	+	CDS,promoter,downstream
28	LOC_Os11g22510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12473765	12477686	+	CDS,promoter,downstream
28	LOC_Os05g16680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9481715	9484654	+	CDS,promoter,downstream
28	LOC_Os08g20170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12087025	12092664	+	CDS,promoter,downstream
28	LOC_Os12g11810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6409214	6413635	-	CDS,downstream
28	LOC_Os08g37850	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr8	23974110	23976936	-	CDS,promoter
28	LOC_Os01g38740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	21749018	21753403	+	CDS
28	LOC_Os01g39190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	22045060	22050693	+	CDS,downstream
28	LOC_Os04g19340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10749113	10752952	+	CDS,promoter,downstream
28	LOC_Os08g28620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17484578	17484805	-	CDS,promoter,downstream
28	LOC_Os04g02420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	871062	876020	-	CDS,downstream
28	LOC_Os04g13390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7444119	7447011	+	CDS,promoter,downstream
28	LOC_Os01g28370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15885536	15899656	-	CDS,promoter,downstream
28	LOC_Os07g15070	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	8631700	8633429	-	CDS,promoter,downstream
28	LOC_Os04g11570	hypothetical protein	gene	hypothetical protein	chr4	6335582	6336602	+	CDS,promoter,downstream
28	LOC_Os02g09860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5090349	5091312	-	CDS,promoter,downstream
28	LOC_Os11g19190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10956465	10959813	+	CDS,promoter,downstream
28	LOC_Os05g25420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	14722893	14724652	+	CDS,promoter
28	LOC_Os05g14810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	8417962	8419858	+	CDS,promoter,downstream
28	LOC_Os10g21390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10874143	10875847	+	CDS,downstream
28	LOC_Os06g02070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	605084	606675	+	CDS,promoter,downstream
28	LOC_Os09g07420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3693945	3700327	+	CDS,promoter,downstream
28	LOC_Os07g28560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16712359	16715539	-	CDS,promoter,downstream
28	LOC_Os06g32300	hypothetical protein	gene	hypothetical protein	chr6	18799085	18799896	-	CDS,downstream
28	LOC_Os02g35290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	21200570	21205947	-	CDS,promoter
28	LOC_Os05g34340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	20291341	20292923	-	CDS,downstream
28	LOC_Os02g54740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	33512656	33517341	+	CDS,downstream
28	LOC_Os05g10240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5567709	5570509	-	CDS,promoter,downstream
28	LOC_Os02g44124	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26677180	26681796	+	CDS,promoter
28	LOC_Os12g07080	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr12	3469214	3471197	+	CDS,promoter,downstream
28	LOC_Os12g27390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	16103216	16110477	-	CDS
28	LOC_Os12g22480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	12682522	12683448	+	CDS,promoter,downstream
28	LOC_Os02g33530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19933501	19935940	-	CDS,promoter
28	LOC_Os07g24910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14159920	14165197	-	CDS
28	LOC_Os06g11530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6113818	6114646	+	CDS,downstream
28	LOC_Os12g09940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5260519	5260914	-	CDS,downstream
28	LOC_Os02g32880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	19519262	19530089	-	CDS,downstream
28	LOC_Os07g33860	60S ribosomal protein L44, putative, expressed	gene	60S ribosomal protein L44, putative, expressed	chr7	20256488	20261890	+	CDS,three_prime_UTR
28	LOC_Os08g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14509564	14512495	+	CDS,promoter,downstream
28	LOC_Os08g16870	hypothetical protein	gene	hypothetical protein	chr8	10324932	10326657	-	CDS,promoter
28	LOC_Os06g35110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	20427842	20431178	-	CDS,promoter,downstream
28	LOC_Os12g15560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8893439	8893989	-	CDS,promoter,downstream
28	LOC_Os12g18390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	10637376	10638485	-	CDS,promoter,downstream
28	LOC_Os06g36540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21467041	21471254	-	CDS,promoter,downstream
28	LOC_Os02g01620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	355653	359764	+	CDS,downstream
28	LOC_Os03g43090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	24035009	24042255	-	CDS
28	LOC_Os05g04400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	2023668	2025848	+	CDS,promoter
28	LOC_Os08g10190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5907417	5911582	-	CDS,promoter,downstream
28	LOC_Os05g17580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10098848	10101648	+	CDS,promoter,downstream
28	LOC_Os02g24290	hypothetical protein	gene	hypothetical protein	chr2	14080755	14082896	+	CDS,promoter,downstream
28	LOC_Os03g40820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22692615	22695204	+	CDS,downstream
28	LOC_Os04g06270	hypothetical protein	gene	hypothetical protein	chr4	3258452	3259647	+	CDS,promoter,downstream
28	LOC_Os07g25040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14276203	14281798	-	CDS,promoter,downstream
28	LOC_Os11g10020	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	5364407	5366021	+	CDS,promoter,downstream
28	LOC_Os02g38460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	23245931	23248303	-	CDS,promoter
28	LOC_Os02g22120	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	13169859	13171845	+	CDS,promoter
28	LOC_Os09g13490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7807303	7807764	-	CDS,promoter
28	LOC_Os08g40800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25805168	25811332	+	CDS,downstream
28	LOC_Os02g11810	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	6106543	6106830	-	CDS,promoter,downstream
28	LOC_Os05g14100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7874596	7877533	-	CDS,promoter,downstream
28	LOC_Os08g24290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14656562	14659231	+	CDS,promoter,downstream
28	LOC_Os05g10440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5684280	5689734	-	CDS,downstream
28	LOC_Os03g28010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16091918	16101847	+	CDS,downstream
28	LOC_Os07g22170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12379014	12382210	+	CDS,promoter,downstream
28	LOC_Os02g22290	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	13318069	13323006	+	five_prime_UTR,downstream
28	LOC_Os10g23940	hypothetical protein	gene	hypothetical protein	chr10	12210475	12211324	+	CDS,promoter,downstream
28	LOC_Os05g22780	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	12865569	12865968	+	CDS,promoter,downstream
28	LOC_Os12g18080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10388080	10392546	+	CDS
28	LOC_Os06g41340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24750001	24760475	-	CDS
28	LOC_Os01g35470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19624124	19627082	+	CDS,promoter,downstream
28	LOC_Os04g21290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11998621	12002366	-	CDS,promoter,downstream
28	LOC_Os03g26760	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	15277016	15286735	-	CDS,promoter
28	LOC_Os04g09310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4939936	4943520	+	CDS,downstream
28	LOC_Os11g33060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19078781	19081909	+	CDS,promoter,downstream
28	LOC_Os12g27050	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15834972	15837544	-	CDS,promoter
28	LOC_Os12g20100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11683944	11684414	-	CDS,promoter,downstream
28	LOC_Os05g17060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9744786	9745334	-	CDS,promoter,downstream
28	LOC_Os09g24029	pollen allergen Cyn d 23, putative	gene	pollen allergen Cyn d 23, putative	chr9	14299369	14299773	-	CDS,promoter,downstream
28	LOC_Os09g09110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4869890	4871966	-	CDS,promoter,downstream
28	LOC_Os04g28190	hypothetical protein	gene	hypothetical protein	chr4	16479464	16480759	-	CDS,promoter,downstream
28	LOC_Os08g30970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19116377	19117233	-	CDS,promoter,downstream
28	LOC_Os05g18160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10432954	10433598	-	CDS,promoter
28	LOC_Os05g15650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8852409	8853515	-	CDS,promoter,downstream
28	LOC_Os04g59090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	34959993	34962139	-	CDS
28	LOC_Os05g31510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	18268255	18271164	+	CDS
28	LOC_Os11g29589	unknown	gene	unknown	chr11	16700765	16701016	-	CDS,promoter,downstream
28	LOC_Os02g17790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10292506	10294000	-	CDS,promoter,downstream
28	LOC_Os08g19080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11386396	11388696	+	CDS,promoter,downstream
28	LOC_Os11g26520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14732463	14737568	-	CDS,promoter,downstream
28	LOC_Os02g14250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	7813507	7815858	+	CDS,promoter
28	LOC_Os06g33030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19225412	19229085	+	CDS,downstream
28	LOC_Os11g25400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14016237	14021553	-	CDS,promoter,downstream
28	LOC_Os03g33300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19042249	19049966	+	CDS,promoter,downstream
28	LOC_Os01g36400	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	20203813	20207413	-	CDS,downstream
28	LOC_Os04g06030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3121356	3124652	-	CDS,promoter
28	LOC_Os10g36134	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19242889	19244201	-	CDS,promoter,downstream
28	LOC_Os04g50050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29666731	29669757	+	CDS
28	LOC_Os06g37085	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	21897983	21901175	-	three_prime_UTR
28	LOC_Os06g24200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14173769	14176528	+	CDS,promoter,downstream
28	LOC_Os07g28130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16418880	16424778	+	CDS,promoter
28	LOC_Os06g18164	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	10574292	10580520	+	CDS
28	LOC_Os04g04490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2134949	2141312	-	CDS,downstream
28	LOC_Os03g21170	hypothetical protein	gene	hypothetical protein	chr3	12076965	12077911	+	CDS,downstream
28	LOC_Os03g38370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	21300499	21301791	-	CDS,promoter,downstream
28	LOC_Os02g58240	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	35644121	35649916	-	CDS
28	LOC_Os04g13230	hypothetical protein	gene	hypothetical protein	chr4	7322461	7325067	-	CDS,promoter
28	LOC_Os12g22510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12704724	12708662	+	CDS,promoter,downstream
28	LOC_Os12g24770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14203381	14205926	-	CDS,promoter,downstream
28	LOC_Os09g14790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8796538	8801089	+	CDS,promoter
28	LOC_Os09g16530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	10138224	10144240	+	CDS
28	LOC_Os11g38560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22379895	22381091	-	CDS,promoter
28	LOC_Os03g56566	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	32216521	32217928	-	CDS,promoter
28	LOC_Os02g30960	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr2	18489698	18492227	-	CDS
28	LOC_Os05g15560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8806955	8811406	-	CDS,promoter,downstream
28	LOC_Os08g05230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	2720120	2720848	+	CDS,promoter,downstream
28	LOC_Os08g12810	hypothetical protein	gene	hypothetical protein	chr8	7588052	7589236	-	CDS,downstream
28	LOC_Os08g30110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18508952	18511961	+	CDS,promoter,downstream
28	LOC_Os06g29950	MATE domain containing protein, expressed	gene	MATE domain containing protein, expressed	chr6	17241874	17247087	+	CDS,three_prime_UTR,downstream
28	LOC_Os04g21960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12421824	12425387	-	CDS,promoter,downstream
28	LOC_Os07g01500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	312665	318435	+	CDS
28	LOC_Os12g29930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17858115	17862608	+	CDS,promoter,downstream
28	LOC_Os12g04310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	1823634	1827469	+	CDS,downstream
28	LOC_Os07g32200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	19135932	19137615	+	CDS,promoter,downstream
28	LOC_Os07g25310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14455297	14457844	-	CDS,downstream
28	LOC_Os09g07010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3398181	3402109	-	CDS,promoter
28	LOC_Os05g15410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8717065	8717530	+	CDS,promoter,downstream
28	LOC_Os07g03630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	1459718	1465675	+	CDS
28	LOC_Os03g12600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	6686090	6694246	+	CDS,promoter,downstream
28	LOC_Os06g26300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15396703	15397092	+	CDS,promoter,downstream
28	LOC_Os04g13730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7652884	7653999	-	CDS,promoter,downstream
28	LOC_Os04g21930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12406269	12410608	+	CDS,promoter
28	LOC_Os08g07230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4028380	4031321	-	CDS,promoter,downstream
28	LOC_Os08g14820	hypothetical protein	gene	hypothetical protein	chr8	8917618	8918653	-	CDS,promoter,downstream
28	LOC_Os07g06262	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3045976	3048917	+	CDS,downstream
28	LOC_Os09g09690	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr9	5228996	5235346	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g06600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3473174	3476066	+	CDS,downstream
28	LOC_Os07g16590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9729095	9734420	-	CDS,promoter
28	LOC_Os07g22440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12615747	12617441	-	CDS,promoter
28	LOC_Os11g24100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13236358	13238285	-	CDS,promoter,downstream
28	LOC_Os04g04180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1939208	1943612	-	CDS,promoter
28	LOC_Os02g37900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22901770	22902489	-	CDS,promoter
28	LOC_Os09g04130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2138633	2145569	+	CDS,promoter,downstream
28	LOC_Os04g23780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13586632	13589489	+	CDS,promoter,downstream
28	LOC_Os11g07720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3931923	3934858	+	CDS,promoter,downstream
28	LOC_Os10g29990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15494733	15495910	-	CDS,downstream
28	LOC_Os03g62450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	35359837	35363124	+	CDS,downstream
28	LOC_Os01g58810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	33979104	33982691	+	CDS,downstream
28	LOC_Os05g29130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17056597	17059059	+	CDS
28	LOC_Os02g22690	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13519332	13521711	-	CDS,promoter,downstream
28	LOC_Os01g29070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16272848	16275588	-	CDS,promoter,downstream
28	LOC_Os05g20110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11764261	11767327	+	CDS,promoter,downstream
28	LOC_Os01g45780	hypothetical protein	gene	hypothetical protein	chr1	26002433	26003128	-	CDS,promoter,downstream
28	LOC_Os01g01090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	43595	46526	+	CDS,promoter,downstream
28	LOC_Os05g06399	expressed protein	gene	expressed protein	chr5	3283654	3287799	+	three_prime_UTR,downstream
28	LOC_Os05g04350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1983367	1988142	-	CDS,promoter,downstream
28	LOC_Os09g22120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13395570	13400463	+	CDS,promoter
28	LOC_Os04g06550	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	3440901	3443645	+	CDS,promoter,downstream
28	LOC_Os09g01900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	604041	607648	-	CDS,downstream
28	LOC_Os01g40790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	23048090	23048993	-	CDS,promoter,downstream
28	LOC_Os02g42420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25512463	25516385	-	CDS
28	LOC_Os08g15750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9550124	9551784	-	CDS,promoter
28	LOC_Os01g60369	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34920387	34923618	+	CDS,promoter,downstream
28	LOC_Os11g11694	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	6493378	6498542	-	five_prime_UTR,downstream
28	LOC_Os12g09870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5232862	5235786	-	CDS,promoter,downstream
28	LOC_Os10g14100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7675994	7677340	-	CDS,promoter,downstream
28	LOC_Os12g16030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9129718	9133627	-	CDS,promoter,downstream
28	LOC_Os01g22190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12473227	12481449	+	CDS,promoter
28	LOC_Os06g02650	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	940264	945389	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g33910	hypothetical protein	gene	hypothetical protein	chr4	20363992	20367035	+	CDS
28	LOC_Os09g32390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	19341066	19347113	+	CDS,promoter
28	LOC_Os01g29340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16436469	16441104	+	CDS,downstream
28	LOC_Os01g63670	hypothetical protein	gene	hypothetical protein	chr1	36932582	36933436	-	CDS,promoter
28	LOC_Os01g25450	AIG1 family protein, expressed	gene	AIG1 family protein, expressed	chr1	14413644	14430227	+	CDS,promoter,downstream
28	LOC_Os12g12790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7050095	7054736	+	CDS,downstream
28	LOC_Os11g26010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	14410922	14413719	+	three_prime_UTR,promoter,downstream
28	LOC_Os07g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13658846	13669258	+	CDS,promoter
28	LOC_Os12g24840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14248691	14250919	-	CDS,promoter,downstream
28	LOC_Os10g08510	hypothetical protein	gene	hypothetical protein	chr10	4630445	4631484	-	CDS,promoter
28	LOC_Os02g39780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24028487	24035461	-	CDS,promoter,downstream
28	LOC_Os08g27270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16648493	16651433	+	CDS,promoter,downstream
28	LOC_Os01g68160	ZOS1-22 - C2H2 zinc finger protein, expressed	gene	ZOS1-22 - C2H2 zinc finger protein, expressed	chr1	39615154	39632811	-	five_prime_UTR,CDS
28	LOC_Os12g19510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11335451	11337728	+	CDS,downstream
28	LOC_Os05g26680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15437201	15439198	-	CDS
28	LOC_Os02g39110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23611877	23618032	+	CDS,promoter
28	LOC_Os05g40680	FAR1 family protein	gene	FAR1 family protein	chr5	23790274	23794591	-	CDS,promoter
28	LOC_Os04g20440	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	11426746	11430347	+	five_prime_UTR,promoter,downstream
28	LOC_Os11g20030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11519764	11524819	-	CDS,promoter,downstream
28	LOC_Os12g11900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6480636	6486970	-	CDS
28	LOC_Os05g07380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3936012	3941719	+	CDS,promoter,downstream
28	LOC_Os12g42500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26372110	26372953	-	CDS,promoter,downstream
28	LOC_Os08g39910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	25287233	25290227	-	CDS,promoter,downstream
28	LOC_Os09g09720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5258870	5262138	+	CDS,promoter,downstream
28	LOC_Os04g28770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	16864674	16867713	-	CDS,promoter
28	LOC_Os10g02640	hypothetical protein	gene	hypothetical protein	chr10	1018474	1020954	+	CDS,downstream
28	LOC_Os04g06450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3366776	3369374	-	CDS,promoter,downstream
28	LOC_Os09g10400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5686319	5687023	-	CDS,promoter,downstream
28	LOC_Os04g21480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12137000	12139822	-	CDS,promoter,downstream
28	LOC_Os06g13540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	7468965	7473317	+	CDS,promoter
28	LOC_Os06g16680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9608425	9614381	+	CDS,downstream
28	LOC_Os11g30130	hypothetical protein	gene	hypothetical protein	chr11	17050444	17052601	+	CDS,promoter,downstream
28	LOC_Os01g04780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2181765	2190942	-	CDS,downstream
28	LOC_Os05g34120	hypothetical protein	gene	hypothetical protein	chr5	20101808	20104116	-	CDS,downstream
28	LOC_Os08g30290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18630213	18631561	-	CDS,promoter
28	LOC_Os08g08330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4779946	4780789	+	CDS,downstream
28	LOC_Os01g28380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	15902591	15904619	-	CDS,promoter
28	LOC_Os06g20940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	12106637	12107655	-	CDS,promoter
28	LOC_Os04g27500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	16084601	16087695	+	CDS,promoter,downstream
28	LOC_Os07g25120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	14347578	14349292	+	CDS,promoter,downstream
28	LOC_Os09g17710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	10829078	10830601	-	CDS,promoter,downstream
28	LOC_Os02g53090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	32477526	32481145	-	CDS,promoter
28	LOC_Os02g24920	hypothetical protein	gene	hypothetical protein	chr2	14438064	14438342	+	CDS,promoter,downstream
28	LOC_Os02g19350	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	11305198	11308941	+	CDS,downstream
28	LOC_Os07g18360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10877508	10882375	+	CDS,promoter,downstream
28	LOC_Os04g28800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16879020	16881106	+	CDS,downstream
28	LOC_Os06g38270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22638451	22641111	-	CDS,promoter,downstream
28	LOC_Os09g31442	hypothetical protein	gene	hypothetical protein	chr9	18936373	18937979	-	CDS,promoter
28	LOC_Os06g13920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	7756760	7759805	-	CDS,promoter,downstream
28	LOC_Os06g19360	cadmium tolerance factor, putative	gene	cadmium tolerance factor, putative	chr6	11012860	11016482	-	CDS,promoter
28	LOC_Os11g19610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11293527	11300925	+	CDS,promoter,downstream
28	LOC_Os04g16690	hypothetical protein	gene	hypothetical protein	chr4	9076605	9077472	+	CDS,downstream
28	LOC_Os02g28550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16883301	16887117	+	CDS,downstream
28	LOC_Os03g39350	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	21865192	21873025	+	CDS,downstream
28	LOC_Os12g34419	hypothetical protein	gene	hypothetical protein	chr12	20822908	20823369	-	CDS,promoter
28	LOC_Os12g24690	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14146798	14150141	+	CDS,promoter,downstream
28	LOC_Os09g07400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3678241	3680586	+	CDS,promoter,downstream
28	LOC_Os09g09650	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr9	5196975	5200335	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g14780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8391848	8395364	-	CDS,promoter,downstream
28	LOC_Os06g14760	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	8326555	8329839	+	CDS
28	LOC_Os01g16700	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr1	9483011	9485026	-	CDS,promoter,downstream
28	LOC_Os09g06350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2982082	2987613	-	CDS,promoter,downstream
28	LOC_Os10g24490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12500353	12501804	-	CDS,promoter,downstream
28	LOC_Os12g31180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18744828	18747767	+	CDS,promoter,downstream
28	LOC_Os05g13460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7467328	7471724	-	CDS,promoter,downstream
28	LOC_Os07g11780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6510481	6511602	+	CDS,promoter,downstream
28	LOC_Os04g27630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16160430	16166417	+	CDS,downstream
28	LOC_Os06g33890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19711500	19717595	+	CDS
28	LOC_Os05g16960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9667127	9674844	-	CDS,promoter,downstream
28	LOC_Os04g03040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1238190	1241477	-	CDS
28	LOC_Os05g14920	hypothetical protein	gene	hypothetical protein	chr5	8471919	8472551	+	CDS,promoter
28	LOC_Os08g35540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22392080	22393473	-	CDS,promoter
28	LOC_Os07g35450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21199553	21200020	+	CDS,promoter,downstream
28	LOC_Os07g17750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10484608	10485241	+	CDS,promoter,downstream
28	LOC_Os01g63630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36900474	36908231	+	CDS
28	LOC_Os12g17510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10025144	10031102	+	CDS
28	LOC_Os10g17560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8783488	8789194	-	CDS,promoter,downstream
28	LOC_Os03g38110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21156187	21157114	+	CDS,promoter,downstream
28	LOC_Os04g08520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	4603855	4606835	-	CDS,promoter
28	LOC_Os07g13750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7885466	7892682	+	CDS,downstream
28	LOC_Os09g14900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8898671	8903527	-	CDS,downstream
28	LOC_Os10g15000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7865960	7866477	-	CDS,promoter,downstream
28	LOC_Os03g40160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	22312892	22320151	-	CDS,promoter,downstream
28	LOC_Os09g11940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6720117	6725646	+	CDS,downstream
28	LOC_Os02g16440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9378677	9381091	+	CDS,promoter,downstream
28	LOC_Os12g21750	hypothetical protein	gene	hypothetical protein	chr12	12233913	12234815	+	CDS,downstream
28	LOC_Os04g14610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8190683	8193131	+	CDS,promoter
28	LOC_Os09g27300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16594235	16601906	-	CDS,promoter
28	LOC_Os04g14220	disease resistance protein RPM1, putative, expressed	gene	disease resistance protein RPM1, putative, expressed	chr4	7968272	7979156	-	CDS,three_prime_UTR
28	LOC_Os01g38080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21329699	21331048	+	CDS,promoter
28	LOC_Os01g04320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	1924325	1925503	+	CDS,promoter
28	LOC_Os06g27480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15555366	15562338	+	CDS,promoter,downstream
28	LOC_Os02g10280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	5396243	5399038	-	CDS,promoter
28	LOC_Os01g36520	hypothetical protein	gene	hypothetical protein	chr1	20264688	20266179	+	CDS,promoter
28	LOC_Os06g23730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	13864855	13868093	-	CDS,promoter,downstream
28	LOC_Os03g31986	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18290346	18295247	+	CDS,promoter,downstream
28	LOC_Os06g41460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24849445	24852357	+	CDS,downstream
28	LOC_Os06g24170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14145602	14148725	-	CDS
28	LOC_Os10g26360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	13594925	13601658	-	CDS,promoter
28	LOC_Os07g17189	unknown	gene	unknown	chr7	10119275	10119710	-	CDS,promoter
28	LOC_Os06g47180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28606081	28610082	-	CDS,promoter,downstream
28	LOC_Os04g48150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28472407	28477297	-	CDS,promoter
28	LOC_Os10g06380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3279130	3282198	+	CDS,promoter,downstream
28	LOC_Os10g22620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11675925	11677269	+	CDS,promoter,downstream
28	LOC_Os05g06580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3398947	3400777	-	CDS,promoter,downstream
28	LOC_Os01g08250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	4023855	4029589	-	CDS
28	LOC_Os10g10600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5869319	5873740	+	CDS,promoter,downstream
28	LOC_Os11g27150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15155685	15159246	+	CDS,promoter,downstream
28	LOC_Os09g24100	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14324832	14325554	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os07g44520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	26581629	26584558	+	CDS,downstream
28	LOC_Os03g37050	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	20544647	20546657	+	CDS,downstream
28	LOC_Os04g25700	hypothetical protein	gene	hypothetical protein	chr4	14896706	14897939	-	CDS,downstream
28	LOC_Os07g17340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10235403	10240547	-	CDS,downstream
28	LOC_Os03g35990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19961165	19965109	-	CDS,promoter,downstream
28	LOC_Os08g25190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15300003	15308394	+	CDS,promoter
28	LOC_Os06g50190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	30386919	30393175	+	CDS
28	LOC_Os01g63040	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	36516297	36520843	-	CDS,promoter
28	LOC_Os03g21419	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr3	12242200	12248570	-	CDS,three_prime_UTR,promoter
28	LOC_Os10g07596	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4192041	4197535	+	CDS,downstream
28	LOC_Os06g36970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	21779781	21783748	-	CDS
28	LOC_Os09g06710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3189766	3192946	-	CDS,promoter,downstream
28	LOC_Os11g10360	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5617117	5618415	-	CDS,promoter
28	LOC_Os05g43010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24916353	24919022	+	CDS,downstream
28	LOC_Os06g35720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20846326	20848652	+	CDS
28	LOC_Os05g15280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8665449	8667698	-	CDS,promoter,downstream
28	LOC_Os09g18080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	11077035	11084278	-	CDS,promoter
28	LOC_Os02g22330	hypothetical protein	gene	hypothetical protein	chr2	13332384	13333320	-	CDS,promoter,downstream
28	LOC_Os06g15750	NB-ARC domain containing protein	gene	NB-ARC domain containing protein	chr6	8934093	8938019	-	CDS
28	LOC_Os03g03240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	1381569	1384494	+	CDS,promoter,downstream
28	LOC_Os08g26660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	16201240	16203403	+	CDS,promoter,downstream
28	LOC_Os04g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1377230	1384035	+	CDS
28	LOC_Os07g14370	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr7	8203558	8206388	-	CDS,downstream
28	LOC_Os07g17840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10546533	10552893	-	CDS,promoter
28	LOC_Os02g37230	hypothetical protein	gene	hypothetical protein	chr2	22487942	22494099	+	CDS,promoter,downstream
28	LOC_Os07g12500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	7130429	7136476	+	CDS,downstream
28	LOC_Os05g49710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28440674	28446128	+	CDS
28	LOC_Os09g14990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8993602	8997253	+	CDS
28	LOC_Os11g25350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13981637	13988621	+	CDS
28	LOC_Os03g15830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	8731705	8735028	+	CDS
28	LOC_Os01g38290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21474116	21475231	-	CDS,promoter,downstream
28	LOC_Os11g19990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11496530	11501431	+	CDS,promoter,downstream
28	LOC_Os06g27410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15513286	15514553	+	CDS,promoter,downstream
28	LOC_Os08g38660	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	24426127	24431480	+	CDS,downstream
28	LOC_Os06g25220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14755871	14756980	+	CDS,promoter,downstream
28	LOC_Os04g07800	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4140969	4141421	-	CDS,promoter,downstream
28	LOC_Os05g26490	PROLM13 - Prolamin precursor, expressed	gene	PROLM13 - Prolamin precursor, expressed	chr5	15343570	15344153	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os08g30170	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	18544705	18545118	-	CDS,promoter
28	LOC_Os12g08350	hypothetical protein	gene	hypothetical protein	chr12	4248171	4248985	+	CDS,promoter
28	LOC_Os11g07790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	3964055	3970053	+	CDS,downstream
28	LOC_Os10g24670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12605903	12607291	-	CDS,promoter,downstream
28	LOC_Os06g13530	benzoate carboxyl methyltransferase, putative, expressed	gene	benzoate carboxyl methyltransferase, putative, expressed	chr6	7467751	7468414	-	CDS,downstream
28	LOC_Os09g13300	hypothetical protein	gene	hypothetical protein	chr9	7669703	7672379	-	CDS,downstream
28	LOC_Os05g31440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	18223170	18229253	-	CDS,promoter
28	LOC_Os02g01580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	327500	330456	-	CDS,promoter,downstream
28	LOC_Os06g47510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	28762056	28765012	-	CDS,downstream
28	LOC_Os10g09940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	5402041	5405785	-	CDS,promoter,downstream
28	LOC_Os05g39030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22826689	22827922	+	CDS,downstream
28	LOC_Os07g18020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10661855	10662958	+	CDS,promoter
28	LOC_Os05g51170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	29287362	29291584	-	CDS,promoter
28	LOC_Os12g23910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13587197	13590159	+	CDS,promoter,downstream
28	LOC_Os06g36140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21145590	21148499	-	CDS,promoter,downstream
28	LOC_Os05g14330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8059349	8063989	+	CDS,promoter
28	LOC_Os04g30380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17954812	17959720	-	CDS,promoter
28	LOC_Os02g26614	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15615138	15624114	+	CDS,downstream
28	LOC_Os11g26090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14461664	14465013	+	CDS,downstream
28	LOC_Os04g10980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	5953188	5962828	+	CDS
28	LOC_Os01g48670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	27899422	27903644	-	CDS
28	LOC_Os07g17500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10341140	10344436	+	CDS,downstream
28	LOC_Os11g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12500744	12506547	-	CDS,promoter
28	LOC_Os03g12080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	6338016	6339809	+	CDS,downstream
28	LOC_Os02g13240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	7053347	7055389	+	CDS,promoter,downstream
28	LOC_Os11g35910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20621989	20625184	+	CDS,promoter,downstream
28	LOC_Os11g38462	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22317971	22321303	-	CDS,promoter
28	LOC_Os04g01400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	282094	286789	+	CDS,downstream
28	LOC_Os04g13830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7712299	7712996	-	CDS,promoter,downstream
28	LOC_Os07g12130	MYB family transcription factor, putative, expressed	gene	MYB family transcription factor, putative, expressed	chr7	6778374	6780684	-	five_prime_UTR,CDS,downstream
28	LOC_Os10g03350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	1421821	1422750	+	CDS,promoter
28	LOC_Os08g24260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14640173	14643124	+	CDS,promoter,downstream
28	LOC_Os02g31330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18788106	18789189	+	CDS,promoter
28	LOC_Os06g31544	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18344516	18345632	+	CDS,promoter,downstream
28	LOC_Os07g16840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9897160	9898953	-	CDS,promoter,downstream
28	LOC_Os12g26020	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	15111850	15115162	-	CDS,promoter
28	LOC_Os03g32540	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	18609975	18611855	+	CDS,promoter,downstream
28	LOC_Os03g37540	hypothetical protein	gene	hypothetical protein	chr3	20820521	20822556	-	CDS,promoter
28	LOC_Os06g20810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12007372	12010704	-	CDS,downstream
28	LOC_Os06g22130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12840886	12841606	-	CDS,promoter,downstream
28	LOC_Os08g11010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6486928	6489740	-	CDS,promoter,downstream
28	LOC_Os04g53750	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	31838751	31847378	+	CDS,three_prime_UTR
28	LOC_Os11g47430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	28003111	28009266	-	CDS
28	LOC_Os11g28550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16003313	16006216	-	CDS,downstream
28	LOC_Os07g18350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10870995	10873924	-	CDS,promoter,downstream
28	LOC_Os08g36720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	23164361	23167692	+	CDS,downstream
28	LOC_Os10g09020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4897639	4901389	+	CDS,promoter,downstream
28	LOC_Os08g27280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16651751	16657843	-	CDS,promoter
28	LOC_Os06g32400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18854695	18856677	-	CDS,promoter,downstream
28	LOC_Os08g12130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7142393	7148550	+	CDS,promoter,downstream
28	LOC_Os01g22830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12826263	12829948	+	CDS,promoter,downstream
28	LOC_Os04g03110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1286005	1290339	+	CDS
28	LOC_Os09g03900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1991384	1997508	-	CDS,promoter,downstream
28	LOC_Os10g16660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8241015	8241463	+	CDS,promoter,downstream
28	LOC_Os09g04370	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	2312602	2312982	-	CDS,promoter,downstream
28	LOC_Os03g34260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19502307	19504449	+	CDS,promoter
28	LOC_Os07g25870	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14857370	14857944	+	CDS,promoter,downstream
28	LOC_Os10g23970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	12216086	12217219	-	CDS,promoter,downstream
28	LOC_Os07g46110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27517068	27520399	+	CDS,promoter,downstream
28	LOC_Os02g27870	expressed protein	gene	expressed protein	chr2	16487690	16496351	-	CDS
28	LOC_Os12g14040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7969204	7969680	+	CDS,promoter,downstream
28	LOC_Os03g04290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	1962550	1966159	-	CDS,promoter,downstream
28	LOC_Os12g27096	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15878333	15890592	-	CDS,promoter
28	LOC_Os08g21849	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13077012	13077665	+	CDS,promoter,downstream
28	LOC_Os08g11360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6678124	6679764	-	CDS,promoter,downstream
28	LOC_Os09g11110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6159766	6162707	-	CDS,promoter,downstream
28	LOC_Os09g07430	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3709692	3714437	+	CDS,promoter,downstream
28	LOC_Os02g33270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19765434	19767521	-	CDS,promoter,downstream
28	LOC_Os12g24350	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	13889667	13890262	+	CDS,promoter,downstream
28	LOC_Os06g34010	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr6	19805031	19808191	-	CDS,three_prime_UTR,promoter
28	LOC_Os03g32600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18651240	18659102	-	CDS,promoter,downstream
28	LOC_Os06g26110	hypothetical protein	gene	hypothetical protein	chr6	15274702	15276838	-	CDS,promoter
28	LOC_Os10g28890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14980266	14984871	-	CDS,downstream
28	LOC_Os02g55350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	33894920	33902185	+	CDS,promoter
28	LOC_Os04g29530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17370289	17373898	-	CDS,promoter
28	LOC_Os05g12050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6889011	6889304	+	CDS,promoter,downstream
28	LOC_Os04g02080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	669637	671625	+	CDS,downstream
28	LOC_Os09g06610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3135411	3136990	-	CDS,promoter,downstream
28	LOC_Os03g17110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	9499855	9501613	+	CDS,promoter,downstream
28	LOC_Os07g22060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12329671	12333569	+	CDS,promoter,downstream
28	LOC_Os03g33250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19019754	19022852	-	CDS,promoter,downstream
28	LOC_Os03g41932	hypothetical protein	gene	hypothetical protein	chr3	23288753	23289365	-	CDS,promoter,downstream
28	LOC_Os01g52840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	30388624	30390760	-	CDS
28	LOC_Os10g37800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20153780	20160061	-	CDS
28	LOC_Os04g08784	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4786467	4787510	-	CDS,promoter,downstream
28	LOC_Os02g28610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16925097	16925786	+	CDS,promoter,downstream
28	LOC_Os08g23480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	14211683	14217620	-	CDS,downstream
28	LOC_Os11g16610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	9202651	9207461	-	CDS,promoter
28	LOC_Os05g30270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	17480134	17485667	-	CDS,promoter
28	LOC_Os04g28970	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	17001455	17002972	-	CDS
28	LOC_Os03g41860	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23242821	23245624	-	CDS,promoter,downstream
28	LOC_Os04g19114	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10601798	10608367	-	CDS,promoter
28	LOC_Os06g42960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25807142	25808545	-	CDS,promoter,downstream
28	LOC_Os04g37860	variant latency associated nuclear antigen, putative	gene	variant latency associated nuclear antigen, putative	chr4	22335679	22336765	-	CDS,promoter,downstream
28	LOC_Os05g38540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	22547833	22552548	+	CDS,promoter
28	LOC_Os03g30440	hypothetical protein	gene	hypothetical protein	chr3	17354773	17358098	-	CDS,downstream
28	LOC_Os06g03410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1304318	1307824	-	CDS,promoter,downstream
28	LOC_Os11g09720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5180533	5183767	+	CDS,downstream
28	LOC_Os10g26910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14079212	14086457	+	CDS,downstream
28	LOC_Os08g19920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11928166	11932043	+	CDS,promoter,downstream
28	LOC_Os10g35350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	18821900	18825898	-	CDS
28	LOC_Os06g26070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15256081	15259783	+	CDS,promoter,downstream
28	LOC_Os06g33260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19364943	19367881	+	CDS,downstream
28	LOC_Os01g23320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	13093426	13096925	-	CDS,promoter,downstream
28	LOC_Os10g18440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9298518	9302395	-	CDS
28	LOC_Os04g20850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11691594	11698228	-	CDS,promoter,downstream
28	LOC_Os02g30740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18314279	18317392	+	CDS,promoter,downstream
28	LOC_Os11g12110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6751543	6753241	+	CDS,promoter
28	LOC_Os07g45030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26868006	26870947	-	CDS,promoter,downstream
28	LOC_Os08g18790	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11211082	11212629	+	CDS,promoter,downstream
28	LOC_Os03g39284	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21819168	21829965	-	CDS,downstream
28	LOC_Os05g43400	hypothetical protein	gene	hypothetical protein	chr5	25173261	25175116	+	CDS,downstream
28	LOC_Os08g40640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	25720404	25730732	-	CDS
28	LOC_Os10g26920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	14087557	14093463	+	CDS,promoter,downstream
28	LOC_Os10g26090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13443633	13446667	-	CDS
28	LOC_Os11g18919	hypothetical protein	gene	hypothetical protein	chr11	10752694	10753783	+	CDS,promoter,downstream
28	LOC_Os09g02520	hypothetical protein	gene	hypothetical protein	chr9	1051451	1051870	+	CDS,promoter,downstream
28	LOC_Os03g17030	polyadenylate-binding protein, putative, expressed	gene	polyadenylate-binding protein, putative, expressed	chr3	9460077	9464449	+	CDS,three_prime_UTR,downstream
28	LOC_Os11g42140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	24909646	24915804	-	CDS
28	LOC_Os07g30310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17913484	17923851	+	CDS
28	LOC_Os05g26377	PROLM9 - Prolamin precursor, expressed	gene	PROLM9 - Prolamin precursor, expressed	chr5	15280693	15281363	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os01g16690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9480182	9482320	-	CDS,promoter,downstream
28	LOC_Os03g03060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	1262587	1267970	-	CDS,promoter
28	LOC_Os06g09040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	4550878	4552664	-	CDS,promoter
28	LOC_Os08g20470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12279866	12280387	+	CDS,promoter,downstream
28	LOC_Os12g07750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	3892614	3897332	+	CDS
28	LOC_Os06g25310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14824560	14826044	-	CDS,promoter,downstream
28	LOC_Os12g09060	trehalose phosphatase, putative	gene	trehalose phosphatase, putative	chr12	4730999	4734236	-	CDS,promoter,downstream
28	LOC_Os05g08720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4779955	4781993	+	CDS
28	LOC_Os08g40470	hypothetical protein	gene	hypothetical protein	chr8	25600304	25604325	+	CDS,promoter,downstream
28	LOC_Os03g44220	hypothetical protein	gene	hypothetical protein	chr3	24844439	24846154	-	CDS,downstream
28	LOC_Os04g13364	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	7422045	7434424	+	three_prime_UTR,promoter,downstream
28	LOC_Os04g24070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13738479	13740939	+	CDS,promoter,downstream
28	LOC_Os10g21080	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	10614013	10621875	+	CDS,downstream
28	LOC_Os01g46169	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr1	26248342	26273140	+	CDS
28	LOC_Os04g11090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6028306	6033810	-	CDS,downstream
28	LOC_Os05g23090	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	13108723	13111311	+	CDS,promoter,downstream
28	LOC_Os04g16010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8684723	8690541	+	CDS,promoter,downstream
28	LOC_Os12g08430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4282241	4288333	-	CDS,promoter
28	LOC_Os02g04200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	1840804	1846851	+	CDS,promoter
28	LOC_Os05g36200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	21403652	21406888	+	CDS
28	LOC_Os09g37820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	21785250	21790320	-	CDS,promoter
28	LOC_Os12g28240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16670719	16673819	-	CDS,promoter,downstream
28	LOC_Os01g33100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	18209815	18214037	-	CDS
28	LOC_Os11g43350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	25690877	25696622	+	CDS
28	LOC_Os12g06690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3256421	3259803	+	CDS,promoter,downstream
28	LOC_Os06g22990	hypothetical protein	gene	hypothetical protein	chr6	13418088	13422242	+	CDS
28	LOC_Os05g10510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	5713266	5717017	-	CDS,promoter,downstream
28	LOC_Os08g23160	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	13962845	13969352	+	CDS,promoter
28	LOC_Os01g28320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	15862120	15862804	-	CDS,promoter,downstream
28	LOC_Os06g48480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29327608	29328060	-	CDS,promoter,downstream
28	LOC_Os10g18850	hypothetical protein	gene	hypothetical protein	chr10	9536033	9536986	-	CDS,promoter
28	LOC_Os03g31380	hypothetical protein	gene	hypothetical protein	chr3	17876671	17879053	+	CDS,downstream
28	LOC_Os10g25760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13274199	13277537	-	CDS,promoter
28	LOC_Os11g35480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20326257	20329562	-	CDS,promoter,downstream
28	LOC_Os01g31240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17081625	17085372	+	CDS,promoter,downstream
28	LOC_Os12g33530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20227654	20234820	+	CDS,promoter,downstream
28	LOC_Os07g24469	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13939300	13940612	-	CDS,promoter
28	LOC_Os05g33470	hypothetical protein	gene	hypothetical protein	chr5	19598898	19601830	-	CDS,promoter
28	LOC_Os03g23200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13403976	13411866	-	CDS,promoter,downstream
28	LOC_Os05g17170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9836680	9838747	-	CDS,promoter,downstream
28	LOC_Os03g17410	expressed protein	gene	expressed protein	chr3	9679826	9684801	-	CDS,promoter
28	LOC_Os03g37360	hypothetical protein	gene	hypothetical protein	chr3	20705536	20708132	+	CDS,promoter
28	LOC_Os06g32120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18694672	18699222	+	CDS,promoter,downstream
28	LOC_Os06g33440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	19479341	19480863	-	CDS
28	LOC_Os10g19120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9662370	9665279	+	CDS,promoter,downstream
28	LOC_Os02g20570	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	12134248	12138246	+	CDS
28	LOC_Os11g22530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12478111	12486721	-	CDS,promoter,downstream
28	LOC_Os12g28420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16794377	16798159	-	CDS,promoter,downstream
28	LOC_Os12g23220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13127442	13130404	+	CDS,promoter,downstream
28	LOC_Os06g41470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24855831	24858767	+	CDS,promoter,downstream
28	LOC_Os06g30520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17652992	17660445	-	CDS,downstream
28	LOC_Os11g26500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14724742	14729167	+	CDS,promoter,downstream
28	LOC_Os03g25100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	14329478	14333949	+	CDS,promoter,downstream
28	LOC_Os11g30170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	17071949	17077666	-	CDS
28	LOC_Os02g04940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	2295764	2302799	+	CDS,promoter,downstream
28	LOC_Os04g27240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15924554	15925319	+	CDS,promoter
28	LOC_Os01g39370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	22153749	22159748	-	CDS,promoter
28	LOC_Os06g17710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10282766	10283197	-	CDS,promoter,downstream
28	LOC_Os02g23827	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13770496	13774936	-	CDS,promoter,downstream
28	LOC_Os06g25780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15058702	15059909	+	CDS,promoter,downstream
28	LOC_Os01g72400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	41991434	41995402	-	CDS,promoter
28	LOC_Os01g61090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35351748	35359301	-	CDS,downstream
28	LOC_Os05g51200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	29304879	29308690	-	CDS,promoter
28	LOC_Os03g44470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25022414	25027431	-	CDS,promoter,downstream
28	LOC_Os03g32770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18756419	18759202	+	CDS,promoter,downstream
28	LOC_Os01g32574	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17866526	17869352	-	CDS,downstream
28	LOC_Os12g12030	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6590751	6592904	-	CDS,promoter,downstream
28	LOC_Os01g37320	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	20829222	20834019	-	CDS,downstream
28	LOC_Os09g07790	hypothetical protein	gene	hypothetical protein	chr9	3942821	3943273	-	CDS,promoter,downstream
28	LOC_Os03g33940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19366959	19370765	-	CDS,promoter,downstream
28	LOC_Os10g17710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	8877219	8880754	+	CDS,promoter
28	LOC_Os12g28970	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	17128190	17132608	-	CDS,promoter,downstream
28	LOC_Os12g12250	hypothetical protein	gene	hypothetical protein	chr12	6724378	6726039	-	CDS
28	LOC_Os12g10470	hypothetical protein	gene	hypothetical protein	chr12	5546276	5553783	+	CDS,downstream
28	LOC_Os07g01040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	26040	28873	+	CDS
28	LOC_Os02g25170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14627902	14635780	-	CDS,promoter,downstream
28	LOC_Os09g01070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	92805	98115	+	CDS,promoter,downstream
28	LOC_Os01g19640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	11136169	11137221	-	CDS,promoter,downstream
28	LOC_Os07g25860	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14853623	14856186	+	CDS,promoter,downstream
28	LOC_Os06g44480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	26861344	26868897	-	CDS,promoter,downstream
28	LOC_Os04g02340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	819922	822023	-	CDS,promoter,downstream
28	LOC_Os10g03170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1337816	1340262	+	CDS,downstream
28	LOC_Os02g32920	hypothetical protein	gene	hypothetical protein	chr2	19541528	19542661	-	CDS,promoter,downstream
28	LOC_Os07g01010	hypothetical protein	gene	hypothetical protein	chr7	1362	2134	+	CDS,promoter,downstream
28	LOC_Os05g17400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	9983494	9985750	-	CDS,promoter,downstream
28	LOC_Os09g07550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3785706	3786191	-	CDS,promoter,downstream
28	LOC_Os07g15850	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9205503	9211139	+	CDS,promoter,downstream
28	LOC_Os11g26470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14706699	14709511	+	CDS,promoter,downstream
28	LOC_Os01g35270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	19525798	19528003	-	CDS,promoter,downstream
28	LOC_Os07g44670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	26645627	26652734	-	CDS,downstream
28	LOC_Os12g39750	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	24514183	24514455	+	CDS,promoter,downstream
28	LOC_Os06g17800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10318861	10322036	-	CDS,promoter
28	LOC_Os08g10900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6426631	6427683	-	CDS,promoter,downstream
28	LOC_Os06g38540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22832940	22835114	+	CDS,promoter
28	LOC_Os01g37350	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	20848689	20856206	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os03g13670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7391948	7395924	-	CDS,promoter,downstream
28	LOC_Os05g32920	hypothetical protein	gene	hypothetical protein	chr5	19223963	19228152	-	CDS
28	LOC_Os02g25520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14898457	14902091	-	CDS,promoter,downstream
28	LOC_Os08g27672	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16860680	16861381	-	CDS,promoter
28	LOC_Os05g23870	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr5	13666600	13668709	+	CDS,promoter,downstream
28	LOC_Os09g10500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5730990	5731583	-	CDS,downstream
28	LOC_Os04g21970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12425665	12426738	-	CDS,promoter,downstream
28	LOC_Os12g28810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17025151	17029849	-	CDS,promoter
28	LOC_Os07g34310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20550600	20558152	-	CDS,promoter
28	LOC_Os11g32680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	18828876	18832585	-	CDS,promoter,downstream
28	LOC_Os02g01050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	27436	31791	+	CDS,promoter
28	LOC_Os10g08240	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	4466456	4469236	-	CDS,promoter,downstream
28	LOC_Os04g31260	hypothetical protein	gene	hypothetical protein	chr4	18527781	18528781	-	CDS,downstream
28	LOC_Os12g17640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10100797	10103007	-	CDS,promoter,downstream
28	LOC_Os04g16260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8825962	8829123	-	CDS,promoter
28	LOC_Os07g19090	zinc knuckle domain containing protein	gene	zinc knuckle domain containing protein	chr7	11298279	11299082	+	CDS,promoter,downstream
28	LOC_Os10g06565	unknown	gene	unknown	chr10	3385362	3388759	-	three_prime_UTR,promoter
28	LOC_Os02g44180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26735523	26740760	+	CDS,promoter,downstream
28	LOC_Os05g25160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14519998	14522534	+	CDS,promoter,downstream
28	LOC_Os01g31130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17025437	17028368	-	CDS,downstream
28	LOC_Os12g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12364635	12366152	+	CDS,promoter,downstream
28	LOC_Os02g18240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10586839	10589951	-	CDS,promoter,downstream
28	LOC_Os08g11200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6576244	6584734	-	CDS,promoter,downstream
28	LOC_Os01g29880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16738035	16739888	-	CDS,promoter,downstream
28	LOC_Os10g38750	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr10	20567916	20571010	+	CDS,downstream
28	LOC_Os05g19900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11593702	11604496	+	CDS,promoter,downstream
28	LOC_Os02g24500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14190417	14192469	+	CDS,downstream
28	LOC_Os10g39530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	21046748	21051096	-	CDS
28	LOC_Os11g06280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	3006068	3012710	-	CDS,promoter
28	LOC_Os08g04060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1966137	1972141	+	CDS,promoter,downstream
28	LOC_Os11g20110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11610690	11613886	+	CDS,promoter,downstream
28	LOC_Os08g04730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2356436	2360288	-	CDS,promoter
28	LOC_Os05g18140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10426601	10427898	+	CDS,promoter,downstream
28	LOC_Os01g36140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19990515	19992247	+	CDS,promoter,downstream
28	LOC_Os11g40310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23565351	23565635	+	CDS,downstream
28	LOC_Os06g27930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15848723	15851683	+	CDS,downstream
28	LOC_Os09g09970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5425226	5427804	-	CDS,promoter
28	LOC_Os06g42520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25571397	25577529	+	CDS,downstream
28	LOC_Os11g20290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11717531	11723347	+	CDS,promoter
28	LOC_Os12g15020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8579767	8582295	+	CDS,promoter
28	LOC_Os02g33360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	19814820	19821186	+	CDS,downstream
28	LOC_Os10g11506	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6389351	6392308	-	CDS,downstream
28	LOC_Os06g30580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	17688964	17689953	+	CDS,promoter
28	LOC_Os07g32580	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	19419307	19426103	-	CDS,promoter
28	LOC_Os06g13900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	7740818	7743758	-	CDS
28	LOC_Os08g29930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18382568	18388678	-	CDS,promoter,downstream
28	LOC_Os03g63124	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	35670926	35678913	-	CDS,downstream
28	LOC_Os10g10970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	6082457	6084637	+	CDS,promoter
28	LOC_Os04g30620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	18115103	18118718	-	CDS,downstream
28	LOC_Os12g16920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9697813	9700674	-	CDS,promoter,downstream
28	LOC_Os05g26350	PROLM4 - Prolamin precursor, expressed	gene	PROLM4 - Prolamin precursor, expressed	chr5	15273010	15273683	+	three_prime_UTR,promoter,downstream
28	LOC_Os05g19700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11492085	11493074	-	CDS,promoter,downstream
28	LOC_Os09g21870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13244471	13246756	-	CDS
28	LOC_Os11g22989	unknown	gene	unknown	chr11	12761988	12762932	-	CDS,promoter
28	LOC_Os11g17130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9509355	9514507	+	CDS,promoter
28	LOC_Os11g22610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12540037	12541746	-	CDS,promoter,downstream
28	LOC_Os04g18610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10282117	10285515	+	CDS,promoter,downstream
28	LOC_Os02g25000	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	14491231	14492940	+	CDS,promoter,downstream
28	LOC_Os04g05200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2587898	2592316	+	CDS,promoter,downstream
28	LOC_Os10g13990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7622978	7625919	-	CDS,promoter,downstream
28	LOC_Os01g31460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17198295	17202407	-	CDS,downstream
28	LOC_Os01g21730	hypothetical protein	gene	hypothetical protein	chr1	12197212	12197978	-	CDS,promoter
28	LOC_Os12g20350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11876779	11884028	-	CDS,promoter,downstream
28	LOC_Os11g25360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13989507	13992400	-	CDS,promoter
28	LOC_Os05g32700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	19086139	19090594	+	CDS,promoter,downstream
28	LOC_Os06g33120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	19280461	19281364	+	CDS,promoter,downstream
28	LOC_Os11g32840	hypothetical protein	gene	hypothetical protein	chr11	18937079	18937408	+	CDS,downstream
28	LOC_Os12g23019	unknown	gene	unknown	chr12	13011025	13011476	+	CDS,promoter,downstream
28	LOC_Os05g31630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	18357383	18362727	+	CDS
28	LOC_Os12g34740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21058141	21063809	-	CDS,promoter,downstream
28	LOC_Os07g27230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15818758	15826788	-	CDS,promoter,downstream
28	LOC_Os12g15640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8928170	8928959	+	CDS,promoter,downstream
28	LOC_Os12g09440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4943228	4945951	+	CDS,promoter,downstream
28	LOC_Os01g58920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34050163	34059290	-	CDS,promoter
28	LOC_Os01g32320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17730030	17733917	-	CDS,promoter
28	LOC_Os04g19280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10718893	10720593	+	CDS,promoter,downstream
28	LOC_Os12g37010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22649292	22655447	-	CDS
28	LOC_Os09g14460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8548608	8549698	-	CDS,promoter,downstream
28	LOC_Os03g28020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16103325	16107327	+	CDS,promoter
28	LOC_Os09g39820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22828444	22834333	+	CDS
28	LOC_Os08g05700	hypothetical protein	gene	hypothetical protein	chr8	3057547	3058391	+	CDS,promoter
28	LOC_Os12g03680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	1476356	1486011	-	CDS,promoter
28	LOC_Os10g18740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9453431	9461369	-	CDS
28	LOC_Os01g29160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16338199	16339142	+	CDS
28	LOC_Os05g24620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14160695	14169964	-	CDS,downstream
28	LOC_Os11g41430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24393994	24397147	+	CDS,promoter,downstream
28	LOC_Os01g19960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11324748	11333907	+	CDS
28	LOC_Os03g35430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19641286	19645710	-	CDS,promoter,downstream
28	LOC_Os04g25620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14839227	14840778	-	CDS,promoter,downstream
28	LOC_Os01g34310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18909520	18916935	+	CDS,downstream
28	LOC_Os12g03570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	1426776	1431538	+	CDS,downstream
28	LOC_Os04g13440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	7473315	7478312	-	CDS,downstream
28	LOC_Os01g28830	hypothetical protein	gene	hypothetical protein	chr1	16144780	16146449	-	CDS,promoter,downstream
28	LOC_Os05g34930	hypothetical protein	gene	hypothetical protein	chr5	20692499	20693324	-	CDS,downstream
28	LOC_Os11g47080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27763415	27766307	-	CDS
28	LOC_Os05g26000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15041432	15049712	+	CDS,promoter,downstream
28	LOC_Os03g32900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18814290	18815942	+	CDS,promoter,downstream
28	LOC_Os08g36197	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr8	22822952	22823896	+	CDS,promoter
28	LOC_Os11g14600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8218535	8219419	+	CDS,promoter,downstream
28	LOC_Os04g30370	OsWAK57 - OsWAK receptor-like protein kinase	gene	OsWAK57 - OsWAK receptor-like protein kinase	chr4	17949471	17954182	+	CDS,downstream
28	LOC_Os12g24960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14325697	14328199	-	CDS,promoter,downstream
28	LOC_Os11g16250	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	8936190	8940262	-	CDS
28	LOC_Os01g29000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16234674	16240272	+	CDS,downstream
28	LOC_Os07g33500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	20022023	20026435	-	CDS
28	LOC_Os06g27470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15552170	15552664	-	CDS,promoter,downstream
28	LOC_Os07g34480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	20666899	20669711	-	CDS,downstream
28	LOC_Os07g40650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	24361522	24367570	+	CDS
28	LOC_Os01g46660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	26567145	26572771	+	CDS,promoter
28	LOC_Os08g30280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18625590	18629117	-	CDS,downstream
28	LOC_Os06g23400	hypothetical protein	gene	hypothetical protein	chr6	13663130	13663813	+	CDS,promoter,downstream
28	LOC_Os10g29549	expressed protein	gene	expressed protein	chr10	15285602	15286509	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os08g11590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6791419	6797073	+	CDS
28	LOC_Os04g13510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7527262	7532713	-	CDS,promoter,downstream
28	LOC_Os04g18040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9955238	9959558	+	CDS,promoter,downstream
28	LOC_Os08g29360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18004397	18009166	+	CDS,promoter
28	LOC_Os03g16530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	9106491	9114702	-	CDS,promoter,downstream
28	LOC_Os10g28180	hAT dimerisation domain containing protein	gene	hAT dimerisation domain containing protein	chr10	14559067	14561994	+	CDS,promoter
28	LOC_Os12g26930	hypothetical protein	gene	hypothetical protein	chr12	15769967	15770413	-	CDS,promoter,downstream
28	LOC_Os09g21960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13295617	13296871	-	CDS
28	LOC_Os08g04330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2121038	2124013	-	CDS,promoter
28	LOC_Os05g20530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	12053703	12056786	-	CDS,promoter,downstream
28	LOC_Os07g23680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13370816	13371673	-	CDS,promoter
28	LOC_Os02g49290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	30115817	30119496	-	CDS,downstream
28	LOC_Os05g17970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10327540	10330471	-	CDS,promoter,downstream
28	LOC_Os08g03130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1429774	1436498	+	CDS,promoter,downstream
28	LOC_Os05g23750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	13587426	13591131	+	CDS,downstream
28	LOC_Os09g21020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	12676273	12681660	+	CDS
28	LOC_Os04g22550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12759781	12761053	-	CDS,downstream
28	LOC_Os07g18850	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	11155638	11161786	-	CDS,promoter,downstream
28	LOC_Os11g20710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11991941	11992653	+	CDS,promoter
28	LOC_Os07g20830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12046371	12049805	+	CDS,promoter
28	LOC_Os12g18050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10374877	10377671	-	CDS,promoter,downstream
28	LOC_Os03g29940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17058882	17065508	+	CDS,promoter
28	LOC_Os12g37440	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	22946801	22948797	-	CDS,downstream
28	LOC_Os08g19290	hypothetical protein	gene	hypothetical protein	chr8	11537257	11537904	+	CDS,promoter,downstream
28	LOC_Os02g29950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	17793080	17796561	+	CDS,promoter
28	LOC_Os04g06380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3381685	3384264	-	CDS,promoter,downstream
28	LOC_Os02g20800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12279588	12285881	+	CDS,promoter
28	LOC_Os08g08310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	4760988	4767003	+	CDS,promoter
28	LOC_Os04g10280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5546888	5553022	-	CDS
28	LOC_Os12g37810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	23181993	23190466	-	CDS,promoter,downstream
28	LOC_Os03g16750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	9277501	9280104	+	CDS,downstream
28	LOC_Os09g05100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2740287	2742055	-	CDS,promoter,downstream
28	LOC_Os04g19090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10583663	10589828	-	CDS,promoter,downstream
28	LOC_Os01g43920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25168111	25169395	+	CDS,promoter,downstream
28	LOC_Os01g36530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20274704	20277076	-	CDS,promoter
28	LOC_Os11g27590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15421955	15425242	+	CDS,promoter,downstream
28	LOC_Os04g31890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	18917502	18918932	+	CDS,downstream
28	LOC_Os08g11160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6561963	6562895	+	CDS,promoter,downstream
28	LOC_Os02g24970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14468822	14472285	+	CDS,promoter,downstream
28	LOC_Os06g28380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	16138294	16143763	+	CDS,promoter
28	LOC_Os05g16740	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	9517408	9527633	+	CDS,three_prime_UTR,downstream
28	LOC_Os08g25940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15775092	15781247	+	CDS
28	LOC_Os04g29700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17514153	17520435	-	CDS,promoter
28	LOC_Os04g16130	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr4	8753188	8755990	+	CDS
28	LOC_Os05g51920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29736022	29736537	-	CDS,promoter
28	LOC_Os07g20490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11829943	11832889	-	CDS,promoter,downstream
28	LOC_Os02g18160	hypothetical protein	gene	hypothetical protein	chr2	10545839	10546509	+	CDS,downstream
28	LOC_Os11g02920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1007611	1009010	+	CDS,downstream
28	LOC_Os07g46020	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	27457101	27462047	-	CDS,promoter
28	LOC_Os06g25360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14855086	14857472	+	CDS,promoter
28	LOC_Os02g33910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	20201961	20207370	+	CDS
28	LOC_Os07g17960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10624096	10627289	-	CDS,promoter
28	LOC_Os02g22180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13210030	13213776	+	CDS,promoter,downstream
28	LOC_Os07g41780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25027916	25034071	-	CDS
28	LOC_Os05g44240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	25670686	25673091	+	CDS,downstream
28	LOC_Os12g28330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16748615	16750349	+	CDS,promoter,downstream
28	LOC_Os10g01120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	104010	105000	-	CDS,downstream
28	LOC_Os06g19830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11324821	11326860	+	CDS,downstream
28	LOC_Os01g27790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15514028	15522366	+	CDS
28	LOC_Os08g16860	OsFBX282 - F-box domain containing protein, expressed	gene	OsFBX282 - F-box domain containing protein, expressed	chr8	10315981	10320156	+	CDS,three_prime_UTR,downstream
28	LOC_Os02g33520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19931793	19932983	-	CDS,promoter,downstream
28	LOC_Os03g35980	hypothetical protein	gene	hypothetical protein	chr3	19956048	19957136	+	CDS,promoter,downstream
28	LOC_Os08g28370	hypothetical protein	gene	hypothetical protein	chr8	17305522	17306306	+	CDS,promoter
28	LOC_Os03g32000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18300946	18303998	-	CDS,promoter
28	LOC_Os11g22950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12729923	12731607	+	CDS,promoter,downstream
28	LOC_Os03g37500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20803451	20810855	-	CDS,promoter
28	LOC_Os01g54660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	31443212	31449328	-	CDS,promoter,downstream
28	LOC_Os04g19170	hypothetical protein	gene	hypothetical protein	chr4	10640581	10641823	-	CDS,promoter,downstream
28	LOC_Os12g37519	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	22991815	22994597	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os10g10300	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	5673737	5678692	-	CDS
28	LOC_Os06g39250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23295641	23299393	-	CDS
28	LOC_Os05g26620	PROLM14 - Prolamin precursor, putative, expressed	gene	PROLM14 - Prolamin precursor, putative, expressed	chr5	15406995	15407623	+	three_prime_UTR,promoter,downstream
28	LOC_Os11g31300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17788407	17796212	+	CDS,downstream
28	LOC_Os11g22370	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12360730	12364957	+	CDS,downstream
28	LOC_Os10g21160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10708553	10709168	-	CDS,promoter
28	LOC_Os12g28900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17078314	17080756	-	CDS,promoter,downstream
28	LOC_Os07g29650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17430257	17432743	+	CDS,downstream
28	LOC_Os05g10400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5666434	5668807	+	CDS,promoter
28	LOC_Os02g45730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	27817142	27820446	-	CDS,promoter
28	LOC_Os12g35110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21324745	21331464	+	CDS,promoter,downstream
28	LOC_Os06g29580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	16949362	16958200	-	CDS
28	LOC_Os03g33165	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18969549	18970849	+	CDS,promoter,downstream
28	LOC_Os05g24480	hypothetical protein	gene	hypothetical protein	chr5	14072573	14073460	+	CDS
28	LOC_Os07g01650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	390639	395976	-	CDS,downstream
28	LOC_Os04g21500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12145724	12151019	+	CDS,promoter,downstream
28	LOC_Os11g12730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7179207	7184737	-	CDS
28	LOC_Os09g17800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10884616	10889039	-	CDS
28	LOC_Os08g07560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4247197	4251998	-	CDS,downstream
28	LOC_Os10g16589	unknown	gene	unknown	chr10	8199130	8199401	+	CDS,promoter,downstream
28	LOC_Os03g33828	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19328158	19330357	-	CDS,promoter,downstream
28	LOC_Os01g50640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29083912	29089840	+	CDS
28	LOC_Os08g44170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	27800320	27807291	+	CDS,promoter
28	LOC_Os08g11050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6499721	6503907	-	CDS,downstream
28	LOC_Os07g20330	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr7	11726720	11731132	+	CDS,downstream
28	LOC_Os11g35880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	20604746	20612112	+	CDS,promoter
28	LOC_Os04g18740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10388946	10391984	-	CDS,promoter
28	LOC_Os01g31670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17334733	17337061	-	CDS,promoter,downstream
28	LOC_Os03g56990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	32457847	32461968	-	CDS
28	LOC_Os09g23980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14281719	14285769	-	CDS,promoter,downstream
28	LOC_Os09g30370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	18477739	18483786	+	CDS,promoter
28	LOC_Os03g42610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23716244	23721907	-	CDS
28	LOC_Os07g47060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28128731	28129371	+	CDS,promoter,downstream
28	LOC_Os12g26540	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15506962	15509459	+	CDS,downstream
28	LOC_Os11g28970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16297297	16298919	-	CDS,downstream
28	LOC_Os08g24120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14561513	14567337	+	CDS,promoter,downstream
28	LOC_Os10g11920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6627822	6631681	+	CDS,promoter,downstream
28	LOC_Os04g07700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4090415	4091215	+	CDS,promoter,downstream
28	LOC_Os01g35200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	19479619	19486630	+	CDS,downstream
28	LOC_Os01g64210	hypothetical protein	gene	hypothetical protein	chr1	37287329	37287814	+	CDS,promoter,downstream
28	LOC_Os08g29700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18236993	18239138	-	CDS,promoter
28	LOC_Os01g31840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17436436	17440658	-	CDS,promoter
28	LOC_Os01g45500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25811032	25812962	-	CDS,promoter,downstream
28	LOC_Os12g30310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	18156122	18161095	+	CDS,downstream
28	LOC_Os11g26360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14619144	14622461	-	CDS,promoter,downstream
28	LOC_Os11g03930	hypothetical protein	gene	hypothetical protein	chr11	1566814	1568278	+	CDS,downstream
28	LOC_Os06g36440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	21391678	21393665	-	CDS,promoter
28	LOC_Os09g03470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1706196	1710782	+	CDS,promoter
28	LOC_Os05g42370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	24728376	24734015	+	CDS
28	LOC_Os11g19764	expressed protein	gene	expressed protein	chr11	11380511	11385622	-	three_prime_UTR,promoter,downstream
28	LOC_Os03g24490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	13954624	13963794	-	CDS
28	LOC_Os01g36440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20227257	20229320	-	CDS,promoter
28	LOC_Os10g06980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3634530	3635872	+	CDS,downstream
28	LOC_Os06g27540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15588926	15593922	+	CDS,promoter,downstream
28	LOC_Os12g16040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9135510	9138669	+	CDS,promoter,downstream
28	LOC_Os03g43610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	24369142	24374164	-	CDS,promoter,downstream
28	LOC_Os02g35780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	21497115	21499620	+	CDS,downstream
28	LOC_Os07g09250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	4849267	4849911	-	CDS,promoter,downstream
28	LOC_Os10g11780	hypothetical protein	gene	hypothetical protein	chr10	6529819	6532532	-	CDS,downstream
28	LOC_Os05g10340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5643920	5646655	+	CDS,downstream
28	LOC_Os06g48390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29264335	29267580	-	CDS,promoter,downstream
28	LOC_Os02g40850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24756878	24759423	-	CDS,promoter
28	LOC_Os12g13780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	7786938	7790333	-	CDS
28	LOC_Os04g54260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	32122708	32128866	+	CDS,promoter
28	LOC_Os10g07618	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4247246	4248233	+	CDS,promoter,downstream
28	LOC_Os09g01200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	180690	184123	+	CDS,promoter
28	LOC_Os12g01860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	503097	506429	+	CDS,promoter,downstream
28	LOC_Os06g32460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18872479	18873015	-	CDS,promoter
28	LOC_Os08g15900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	9685490	9689017	+	CDS,promoter,downstream
28	LOC_Os12g26520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15497947	15501972	+	CDS,downstream
28	LOC_Os04g11260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	6150924	6153308	-	CDS,promoter,downstream
28	LOC_Os06g30610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	17706575	17713430	-	CDS
28	LOC_Os04g10070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5432914	5436814	+	CDS,promoter,downstream
28	LOC_Os04g05810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2980089	2980830	+	CDS,promoter,downstream
28	LOC_Os08g11990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7039074	7040223	+	CDS,downstream
28	LOC_Os03g24420	hypothetical protein	gene	hypothetical protein	chr3	13909258	13912853	-	CDS,promoter
28	LOC_Os10g17130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8531629	8532015	-	CDS,promoter,downstream
28	LOC_Os01g34140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18804546	18812615	-	CDS,downstream
28	LOC_Os01g15080	hypothetical protein	gene	hypothetical protein	chr1	8456959	8457710	+	CDS
28	LOC_Os07g30360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17964137	17969953	-	CDS
28	LOC_Os02g16470	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr2	9404405	9407427	-	CDS,three_prime_UTR,promoter
28	LOC_Os07g30320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17933890	17939847	-	CDS
28	LOC_Os06g09000	hypothetical protein	gene	hypothetical protein	chr6	4533691	4534054	+	CDS,promoter,downstream
28	LOC_Os11g24090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13231283	13233594	-	CDS,promoter,downstream
28	LOC_Os05g44450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	25805679	25807442	-	CDS,promoter,downstream
28	LOC_Os06g25990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15217546	15222170	-	CDS
28	LOC_Os02g20460	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr2	12065351	12068629	-	CDS,downstream
28	LOC_Os08g24220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14616012	14621488	+	CDS,downstream
28	LOC_Os06g27370	expressed protein	gene	expressed protein	chr6	15497179	15499987	-	CDS,downstream
28	LOC_Os11g38820	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr11	22624673	22630286	+	CDS,promoter
28	LOC_Os12g14530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8293493	8296441	+	CDS,downstream
28	LOC_Os08g30050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18465641	18470423	+	CDS
28	LOC_Os05g24310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14006417	14009896	+	CDS,downstream
28	LOC_Os08g13600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8079347	8083035	+	CDS,promoter
28	LOC_Os12g22440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12667776	12669335	-	CDS,promoter,downstream
28	LOC_Os03g06100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3052311	3057823	-	CDS
28	LOC_Os10g25980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13386105	13390577	-	CDS,promoter
28	LOC_Os12g15010	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8571866	8575111	+	CDS,promoter,downstream
28	LOC_Os07g15470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8973672	8979364	+	CDS,promoter,downstream
28	LOC_Os02g34210	hypothetical protein	gene	hypothetical protein	chr2	20460825	20462776	+	CDS,promoter
28	LOC_Os01g36280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20108596	20117225	+	CDS,downstream
28	LOC_Os05g25330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14650240	14654668	+	CDS,downstream
28	LOC_Os12g24980	hypothetical protein	gene	hypothetical protein	chr12	14334114	14338572	-	CDS,promoter
28	LOC_Os07g31590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	18754264	18758141	-	CDS,promoter,downstream
28	LOC_Os08g20885	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12524586	12525390	+	CDS,promoter,downstream
28	LOC_Os02g56420	OsWAK23 - OsWAK short gene, expressed	gene	OsWAK23 - OsWAK short gene, expressed	chr2	34539408	34547740	+	CDS,three_prime_UTR,downstream
28	LOC_Os03g10280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	5241423	5244746	-	CDS
28	LOC_Os03g20820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	11789050	11793829	+	CDS,promoter
28	LOC_Os07g16650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9772398	9778471	-	CDS,promoter,downstream
28	LOC_Os04g06374	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3329473	3332072	-	CDS,promoter,downstream
28	LOC_Os03g29520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16819764	16828001	-	CDS,promoter,downstream
28	LOC_Os01g38810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	21768425	21770661	-	CDS,promoter,downstream
28	LOC_Os04g13750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7663656	7666866	-	CDS,promoter,downstream
28	LOC_Os06g03000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1100366	1101751	-	CDS,promoter
28	LOC_Os11g20770	hypothetical protein	gene	hypothetical protein	chr11	12015478	12016317	+	CDS,promoter,downstream
28	LOC_Os10g12590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7025523	7027950	-	CDS,promoter,downstream
28	LOC_Os09g15410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9433632	9434432	+	CDS,promoter,downstream
28	LOC_Os08g44700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28086123	28092278	+	CDS,promoter
28	LOC_Os10g13770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7497973	7505011	-	CDS,promoter,downstream
28	LOC_Os03g33044	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18900820	18901449	+	CDS,downstream
28	LOC_Os12g05144	hypothetical protein	gene	hypothetical protein	chr12	2271193	2272370	-	CDS
28	LOC_Os09g22220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13439221	13442439	+	CDS,promoter,downstream
28	LOC_Os07g30430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18011030	18014971	-	CDS
28	LOC_Os08g09530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5523769	5524835	+	CDS,promoter,downstream
28	LOC_Os04g17760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9717555	9723698	-	CDS
28	LOC_Os08g26970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16469840	16475244	-	CDS,promoter
28	LOC_Os02g14030	hypothetical protein	gene	hypothetical protein	chr2	7658701	7659433	-	CDS,downstream
28	LOC_Os02g55649	CXXXC8 - Cysteine-rich protein with paired CXXXC motifs precursor, putative, expressed	gene	CXXXC8 - Cysteine-rich protein with paired CXXXC motifs precursor, putative, expressed	chr2	34075906	34076615	+	three_prime_UTR,promoter,downstream
28	LOC_Os03g02140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	692068	695823	-	CDS,promoter,downstream
28	LOC_Os06g44800	transposon protein, putative, Ac/Ds sub-class, expressed	gene	transposon protein, putative, Ac/Ds sub-class, expressed	chr6	27062983	27066211	-	CDS,promoter
28	LOC_Os05g26290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15232233	15234803	+	CDS,promoter,downstream
28	LOC_Os02g24420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14149302	14151875	-	CDS,promoter,downstream
28	LOC_Os10g03190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1346738	1348027	-	CDS,promoter,downstream
28	LOC_Os10g09250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5015967	5018157	-	CDS,promoter,downstream
28	LOC_Os05g49540	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	28341045	28354555	+	CDS,downstream
28	LOC_Os12g39600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	24406461	24409368	+	CDS,promoter,downstream
28	LOC_Os09g03870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1958631	1979370	+	CDS,promoter,downstream
28	LOC_Os10g01510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	327310	330479	+	CDS,promoter,downstream
28	LOC_Os04g14050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7834232	7836954	+	CDS,promoter,downstream
28	LOC_Os09g23260	hypothetical protein	gene	hypothetical protein	chr9	13803502	13805670	+	CDS
28	LOC_Os05g32400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18840903	18847548	+	CDS,downstream
28	LOC_Os03g27720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	15887669	15888658	-	CDS,promoter
28	LOC_Os06g23890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13959121	13962463	-	CDS,promoter,downstream
28	LOC_Os10g13780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7507172	7508178	+	CDS,promoter,downstream
28	LOC_Os12g16310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	9322573	9325245	-	CDS
28	LOC_Os02g10910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	5790143	5796042	+	CDS
28	LOC_Os02g25290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14740456	14745797	+	CDS,promoter,downstream
28	LOC_Os11g19580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11280600	11281458	+	CDS,promoter,downstream
28	LOC_Os01g41620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23560661	23566285	-	CDS,downstream
28	LOC_Os10g08702	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4734510	4738824	+	CDS,promoter,downstream
28	LOC_Os04g09460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5060223	5065215	+	CDS,promoter,downstream
28	LOC_Os01g42170	zinc knuckle family protein	gene	zinc knuckle family protein	chr1	23902424	23907328	-	CDS
28	LOC_Os10g17080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8485045	8486725	-	CDS,promoter
28	LOC_Os06g23240	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	13567066	13568661	+	CDS,downstream
28	LOC_Os10g16840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	8316089	8318654	-	CDS,downstream
28	LOC_Os07g17570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10375449	10375850	+	CDS,promoter,downstream
28	LOC_Os08g30190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18554775	18559303	+	CDS
28	LOC_Os11g28040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15657778	15658130	+	CDS,promoter,downstream
28	LOC_Os05g24850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14342302	14344743	-	CDS,promoter
28	LOC_Os11g24964	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13750157	13755521	-	CDS,promoter,downstream
28	LOC_Os02g29270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17384524	17385650	+	CDS,promoter,downstream
28	LOC_Os02g46230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	28179717	28184271	+	CDS,promoter,downstream
28	LOC_Os12g27230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15974998	15978683	-	CDS,promoter,downstream
28	LOC_Os02g21600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	12829400	12833067	+	CDS,promoter,downstream
28	LOC_Os11g43260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25626849	25632498	-	CDS,downstream
28	LOC_Os09g09760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5280420	5287374	+	CDS,downstream
28	LOC_Os03g38450	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	21343335	21345380	+	CDS,promoter
28	LOC_Os06g16130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9179933	9182962	+	CDS,promoter,downstream
28	LOC_Os11g36590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21131648	21135602	+	CDS,promoter
28	LOC_Os11g18590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10485913	10486575	-	CDS,promoter,downstream
28	LOC_Os01g66410	hypothetical protein	gene	hypothetical protein	chr1	38559518	38560881	-	CDS,promoter
28	LOC_Os12g01320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	178539	184910	+	CDS,promoter,downstream
28	LOC_Os12g25190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14469211	14474666	-	CDS
28	LOC_Os11g21830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12071230	12076692	+	CDS,promoter,downstream
28	LOC_Os04g34840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	20951589	20954921	+	CDS
28	LOC_Os05g20610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12091050	12092306	-	CDS,promoter
28	LOC_Os11g23940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	13100077	13101724	+	CDS,promoter,downstream
28	LOC_Os07g24610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13997926	13998626	-	CDS,promoter,downstream
28	LOC_Os07g05780	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	2782268	2784508	+	CDS,promoter,downstream
28	LOC_Os06g14600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8216962	8219918	-	CDS,promoter
28	LOC_Os11g18080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10159745	10164724	-	CDS
28	LOC_Os06g33050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19245693	19249695	+	CDS,promoter,downstream
28	LOC_Os09g12370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7068308	7070423	-	CDS,promoter
28	LOC_Os03g37377	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20709746	20715596	+	CDS
28	LOC_Os05g15960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9011473	9014388	+	CDS,promoter,downstream
28	LOC_Os04g50164	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29742184	29743758	-	CDS,promoter,downstream
28	LOC_Os04g03710	OsSub36 - Putative Subtilisin homologue	gene	OsSub36 - Putative Subtilisin homologue	chr4	1634393	1643578	+	CDS
28	LOC_Os07g13130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7514726	7517884	-	CDS,promoter,downstream
28	LOC_Os02g06310	hypothetical protein	gene	hypothetical protein	chr2	3154192	3157440	+	CDS
28	LOC_Os05g38430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	22476328	22479681	+	CDS,downstream
28	LOC_Os06g19350	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	11004567	11010075	+	CDS,promoter,downstream
28	LOC_Os10g08110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4402657	4404388	-	CDS,promoter,downstream
28	LOC_Os06g48460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29317879	29320819	+	CDS,promoter,downstream
28	LOC_Os07g20370	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11760692	11766400	+	CDS,promoter,downstream
28	LOC_Os01g44000	hypothetical protein	gene	hypothetical protein	chr1	25214222	25214464	-	CDS,promoter,downstream
28	LOC_Os11g23800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13005866	13006648	+	CDS,promoter,downstream
28	LOC_Os10g31600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	16486665	16489586	-	CDS,promoter,downstream
28	LOC_Os09g03970	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	2039785	2040266	+	CDS
28	LOC_Os06g28160	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15995593	15999301	-	CDS,promoter,downstream
28	LOC_Os12g01780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	472751	476819	-	CDS
28	LOC_Os11g19020	hypothetical protein	gene	hypothetical protein	chr11	10834357	10835657	+	CDS,promoter,downstream
28	LOC_Os12g17260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9876763	9879991	+	CDS,downstream
28	LOC_Os03g44590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	25105261	25108687	+	CDS,promoter,downstream
28	LOC_Os03g13880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	7526612	7528747	+	CDS,promoter,downstream
28	LOC_Os12g14972	unknown	gene	unknown	chr12	8561400	8561778	-	CDS,promoter,downstream
28	LOC_Os04g04440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2110034	2110463	+	CDS,promoter,downstream
28	LOC_Os06g17930	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr6	10419704	10426558	+	CDS
28	LOC_Os06g45520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	27534009	27540107	+	CDS,downstream
28	LOC_Os09g40075	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22999910	23003544	-	CDS,downstream
28	LOC_Os07g24670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14034964	14037217	+	CDS,promoter,downstream
28	LOC_Os02g24670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14302634	14308271	+	CDS,promoter,downstream
28	LOC_Os12g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12516518	12520168	-	CDS,promoter,downstream
28	LOC_Os11g17310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9643580	9649243	+	CDS,promoter,downstream
28	LOC_Os02g19300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11276590	11283484	+	CDS,promoter,downstream
28	LOC_Os07g20560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11877647	11882355	-	CDS,promoter,downstream
28	LOC_Os12g37230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22807324	22807785	+	CDS,promoter,downstream
28	LOC_Os02g25850	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	15139160	15140199	+	CDS,downstream
28	LOC_Os07g11160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6154364	6157911	-	CDS
28	LOC_Os08g11960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7008477	7016700	+	CDS,promoter,downstream
28	LOC_Os02g34450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	20634927	20639339	+	CDS,downstream
28	LOC_Os05g18060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10388329	10390702	-	CDS,promoter,downstream
28	LOC_Os05g16010	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr5	9041374	9043287	-	CDS,promoter,downstream
28	LOC_Os10g20430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10201625	10206696	-	CDS,promoter
28	LOC_Os12g29190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17277761	17283856	+	CDS,downstream
28	LOC_Os09g07690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3877405	3880316	-	CDS,promoter
28	LOC_Os10g25710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13245299	13246482	+	CDS,promoter,downstream
28	LOC_Os05g18240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10491882	10492801	-	CDS,promoter,downstream
28	LOC_Os02g08390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	4465775	4469430	+	CDS
28	LOC_Os04g16200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8788536	8795447	+	CDS,downstream
28	LOC_Os11g17320	hypothetical protein	gene	hypothetical protein	chr11	9653405	9654814	-	CDS,downstream
28	LOC_Os06g15270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8668561	8669973	-	CDS,downstream
28	LOC_Os07g48400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28921281	28922562	+	CDS,promoter
28	LOC_Os03g45490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25670341	25672202	-	CDS,promoter,downstream
28	LOC_Os04g06402	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3336614	3339418	-	CDS,promoter,downstream
28	LOC_Os04g12050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	6617669	6618565	-	CDS,promoter,downstream
28	LOC_Os08g04970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	2544236	2547979	+	CDS
28	LOC_Os04g18700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10349099	10358239	-	CDS,promoter,downstream
28	LOC_Os08g38150	hypothetical protein	gene	hypothetical protein	chr8	24159462	24163319	+	CDS,promoter
28	LOC_Os11g11820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6558636	6561842	-	CDS,promoter,downstream
28	LOC_Os11g22020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12194514	12197447	-	CDS,promoter,downstream
28	LOC_Os07g11080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6123795	6126898	+	CDS,downstream
28	LOC_Os02g18600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10846039	10848189	+	CDS,promoter,downstream
28	LOC_Os09g28680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17437482	17445054	-	CDS,promoter
28	LOC_Os05g38920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	22758784	22761813	+	CDS,promoter
28	LOC_Os10g12330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6876124	6880442	-	CDS,promoter
28	LOC_Os07g12970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7440511	7443710	+	CDS,promoter,downstream
28	LOC_Os04g38120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22504847	22506899	-	CDS,promoter,downstream
28	LOC_Os04g10620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5760658	5765232	-	CDS,promoter
28	LOC_Os04g26020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15131357	15131995	-	CDS,promoter
28	LOC_Os08g11620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6815578	6819376	+	CDS,promoter,downstream
28	LOC_Os12g30240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18117723	18120528	-	CDS,promoter,downstream
28	LOC_Os05g26480	PROLM12 - Prolamin precursor, putative, expressed	gene	PROLM12 - Prolamin precursor, putative, expressed	chr5	15341069	15341638	+	three_prime_UTR,promoter,downstream
28	LOC_Os04g13050	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7190194	7195582	-	CDS
28	LOC_Os05g44860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26007587	26009074	-	CDS,promoter,downstream
28	LOC_Os07g24630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14010997	14012799	+	CDS,promoter,downstream
28	LOC_Os10g08250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4473286	4476615	+	CDS,downstream
28	LOC_Os03g42890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23913850	23915476	+	CDS,promoter,downstream
28	LOC_Os04g14580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8171029	8181253	+	CDS,promoter
28	LOC_Os06g37960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22455692	22456159	+	CDS,promoter,downstream
28	LOC_Os12g23110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13062669	13066318	-	CDS,downstream
28	LOC_Os02g25670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15015299	15018415	-	CDS,promoter
28	LOC_Os03g50800	fucosyltransferase 6, putative	gene	fucosyltransferase 6, putative	chr3	29001070	29001476	-	CDS,promoter
28	LOC_Os07g13400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7687111	7689468	+	CDS,promoter,downstream
28	LOC_Os11g19830	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	11416575	11422760	-	CDS,promoter
28	LOC_Os07g30190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17831069	17837281	+	CDS
28	LOC_Os06g39550	hypothetical protein	gene	hypothetical protein	chr6	23484969	23486157	+	CDS,promoter
28	LOC_Os06g22919	DEFL9 - Defensin and Defensin-like DEFL family, expressed	gene	DEFL9 - Defensin and Defensin-like DEFL family, expressed	chr6	13374504	13389471	+	five_prime_UTR
28	LOC_Os10g24820	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr10	12697338	12698622	-	CDS,downstream
28	LOC_Os05g26340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15265370	15266735	-	CDS,promoter,downstream
28	LOC_Os10g29000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	15045722	15045982	-	CDS,promoter,downstream
28	LOC_Os11g31830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	18238869	18242981	-	CDS
28	LOC_Os12g16590	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr12	9490817	9494174	+	CDS,promoter,downstream
28	LOC_Os01g35210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	19488141	19491827	+	CDS,promoter,downstream
28	LOC_Os09g13210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7609321	7613742	+	CDS,promoter,downstream
28	LOC_Os04g15510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8428562	8430865	+	CDS,promoter,downstream
28	LOC_Os01g39520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	22270802	22272432	+	CDS,promoter,downstream
28	LOC_Os10g22130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11356550	11361715	-	CDS,downstream
28	LOC_Os01g26240	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	14870547	14877483	-	CDS,promoter
28	LOC_Os08g14679	unknown	gene	unknown	chr8	8831764	8832131	-	CDS,promoter,downstream
28	LOC_Os01g38420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21586243	21589924	+	CDS,downstream
28	LOC_Os11g22940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12723203	12728276	-	CDS,promoter,downstream
28	LOC_Os05g13450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7462361	7465948	+	CDS,promoter,downstream
28	LOC_Os08g18960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	11305282	11307300	-	CDS
28	LOC_Os09g07210	hypothetical protein	gene	hypothetical protein	chr9	3528931	3529529	-	CDS,promoter,downstream
28	LOC_Os10g08150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4414544	4415392	+	CDS,promoter,downstream
28	LOC_Os10g25720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13247317	13251090	+	CDS,promoter
28	LOC_Os11g22330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12334994	12338191	+	CDS,promoter,downstream
28	LOC_Os12g17390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9956829	9958626	-	CDS,promoter,downstream
28	LOC_Os04g02320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	811736	813172	-	CDS,promoter,downstream
28	LOC_Os12g15950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9085271	9088871	-	CDS,promoter,downstream
28	LOC_Os03g24260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13800871	13805786	+	CDS,downstream
28	LOC_Os11g03830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	1513933	1520408	-	CDS
28	LOC_Os07g24760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14074464	14075306	-	CDS,promoter,downstream
28	LOC_Os06g25380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14861706	14864341	-	CDS,promoter
28	LOC_Os03g21610	hypothetical protein	gene	hypothetical protein	chr3	12337022	12338523	-	CDS
28	LOC_Os01g31714	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17358636	17361557	+	CDS,promoter,downstream
28	LOC_Os05g30120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17376077	17376622	-	CDS,promoter,downstream
28	LOC_Os12g07090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3472805	3473531	-	CDS,promoter,downstream
28	LOC_Os06g27450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15543094	15544654	-	CDS,promoter,downstream
28	LOC_Os02g25750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15067792	15068741	-	CDS,promoter,downstream
28	LOC_Os02g01640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	362746	367311	-	CDS,promoter
28	LOC_Os03g38070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21130864	21133687	+	CDS,downstream
28	LOC_Os07g24840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14122798	14125904	+	CDS,downstream
28	LOC_Os07g13390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	7674115	7681665	+	CDS,downstream
28	LOC_Os01g43210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	24678546	24685666	+	CDS,downstream
28	LOC_Os02g41870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	25161389	25168306	-	CDS
28	LOC_Os01g20140	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr1	11443168	11443662	-	CDS,promoter,downstream
28	LOC_Os11g44480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26437645	26439033	-	CDS
28	LOC_Os07g22380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12556671	12562440	+	CDS,downstream
28	LOC_Os04g22850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12937576	12940490	-	CDS,promoter
28	LOC_Os06g23610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13770057	13772612	-	CDS,downstream
28	LOC_Os01g22270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12520006	12525769	+	CDS,promoter,downstream
28	LOC_Os12g35660	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr12	21646530	21649924	-	three_prime_UTR,promoter
28	LOC_Os10g42600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	22885592	22892347	+	CDS
28	LOC_Os01g37440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20918827	20921133	+	CDS
28	LOC_Os05g35090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	20772787	20775459	-	CDS,downstream
28	LOC_Os11g08542	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	4506684	4509654	+	CDS,promoter,downstream
28	LOC_Os01g23200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13032697	13037034	+	CDS,promoter
28	LOC_Os06g19160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	10899609	10908498	-	CDS,downstream
28	LOC_Os04g21370	hypothetical protein	gene	hypothetical protein	chr4	12069022	12070210	+	CDS,promoter,downstream
28	LOC_Os02g44440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26901457	26903865	+	CDS,promoter,downstream
28	LOC_Os04g29590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	17422232	17425045	-	CDS,downstream
28	LOC_Os02g42830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25740246	25740824	-	CDS,promoter,downstream
28	LOC_Os01g28560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15985552	15986519	-	CDS,promoter,downstream
28	LOC_Os11g03000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1042804	1044020	+	CDS,promoter,downstream
28	LOC_Os07g22180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12382641	12384137	-	CDS,promoter
28	LOC_Os01g27080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15099871	15104893	-	CDS,downstream
28	LOC_Os01g38440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	21604588	21606806	+	CDS,downstream
28	LOC_Os05g05520	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr5	2742651	2748387	+	CDS,promoter
28	LOC_Os02g45510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	27676250	27678622	-	CDS,promoter
28	LOC_Os08g03210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1489408	1492336	+	CDS,promoter,downstream
28	LOC_Os07g11590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6389804	6394522	-	CDS
28	LOC_Os06g49900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	30208776	30210221	-	CDS,promoter,downstream
28	LOC_Os07g27420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15972233	15980050	+	CDS,promoter
28	LOC_Os06g16670	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr6	9594736	9598682	+	five_prime_UTR,CDS,downstream
28	LOC_Os01g06160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	2933728	2936718	+	CDS,downstream
28	LOC_Os08g12550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7427177	7428853	-	CDS,promoter,downstream
28	LOC_Os12g18800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	10882850	10885901	-	CDS,promoter,downstream
28	LOC_Os12g27860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16420188	16422064	+	CDS,downstream
28	LOC_Os10g03180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1340736	1341779	+	CDS,promoter,downstream
28	LOC_Os11g28140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15709684	15713370	-	CDS,downstream
28	LOC_Os01g29680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16629003	16631774	-	CDS,promoter
28	LOC_Os09g13060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7527906	7530974	-	CDS,promoter
28	LOC_Os08g12670	hypothetical protein	gene	hypothetical protein	chr8	7486792	7487178	-	CDS,promoter
28	LOC_Os01g61100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35361388	35367769	+	CDS,promoter,downstream
28	LOC_Os12g21990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12367030	12369711	+	CDS,promoter,downstream
28	LOC_Os03g41870	nucleic acid binding protein, putative	gene	nucleic acid binding protein, putative	chr3	23247268	23248076	-	CDS,promoter,downstream
28	LOC_Os09g28950	hypothetical protein	gene	hypothetical protein	chr9	17612253	17613981	-	CDS
28	LOC_Os11g44400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	26380811	26390959	+	CDS
28	LOC_Os10g24310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12379187	12388143	+	CDS,promoter,downstream
28	LOC_Os06g29880	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	17211115	17212720	-	CDS,downstream
28	LOC_Os07g26280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15107440	15108590	+	CDS,downstream
28	LOC_Os10g28950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15016955	15023920	+	CDS,promoter,downstream
28	LOC_Os10g10230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5643452	5645647	+	CDS,promoter,downstream
28	LOC_Os06g05230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	2342538	2348554	+	CDS
28	LOC_Os02g24780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14368964	14373800	-	CDS,promoter,downstream
28	LOC_Os05g17890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10283049	10287245	+	CDS,promoter,downstream
28	LOC_Os12g28210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	16656220	16656861	-	CDS,promoter,downstream
28	LOC_Os06g35800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	20889791	20894080	+	CDS
28	LOC_Os05g20710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12140535	12147574	+	CDS,promoter,downstream
28	LOC_Os06g14900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8462150	8463030	+	CDS,promoter,downstream
28	LOC_Os07g12860	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	7370985	7376880	+	CDS,downstream
28	LOC_Os05g20000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11689756	11693137	-	CDS
28	LOC_Os12g07920	hypothetical protein	gene	hypothetical protein	chr12	4019192	4020396	+	CDS,promoter,downstream
28	LOC_Os05g15550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8798564	8804845	-	CDS,promoter,downstream
28	LOC_Os10g07572	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4107568	4112962	-	CDS,promoter
28	LOC_Os11g27960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	15617059	15618426	+	CDS,promoter
28	LOC_Os03g04720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2252685	2254415	+	CDS,downstream
28	LOC_Os06g13110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	7195592	7200418	+	CDS,promoter
28	LOC_Os06g29270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16705403	16712256	-	CDS,promoter
28	LOC_Os11g27140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15152923	15153910	+	CDS,promoter,downstream
28	LOC_Os10g42448	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22814765	22815425	+	CDS,downstream
28	LOC_Os03g33080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	18925277	18927971	-	CDS,promoter,downstream
28	LOC_Os12g13060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7248426	7251433	-	CDS,promoter,downstream
28	LOC_Os05g44620	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	25895271	25897697	+	CDS
28	LOC_Os04g11310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6170494	6174906	-	CDS,promoter,downstream
28	LOC_Os10g02544	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	959291	964491	+	CDS,promoter,downstream
28	LOC_Os12g16820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9641648	9644577	+	CDS,promoter,downstream
28	LOC_Os01g34720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19151698	19153683	+	CDS,promoter
28	LOC_Os11g39460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23033739	23035722	+	CDS
28	LOC_Os08g42240	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	26669972	26670551	-	CDS,downstream
28	LOC_Os08g16000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9745953	9752940	-	CDS,downstream
28	LOC_Os06g27700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15682978	15686666	-	CDS,promoter,downstream
28	LOC_Os03g22970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13264219	13268332	+	CDS,downstream
28	LOC_Os09g03510	hypothetical protein	gene	hypothetical protein	chr9	1731917	1732400	-	CDS,downstream
28	LOC_Os04g34320	S-domain receptor-like protein kinase, putative	gene	S-domain receptor-like protein kinase, putative	chr4	20613391	20615696	+	CDS
28	LOC_Os11g20450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11828673	11835422	+	CDS,promoter,downstream
28	LOC_Os11g15260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8613125	8616477	+	CDS
28	LOC_Os09g37550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	21649574	21650249	-	CDS
28	LOC_Os06g45170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27308513	27313034	+	CDS,promoter
28	LOC_Os10g30820	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	15980943	15981646	-	CDS,downstream
28	LOC_Os10g42880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	23046593	23054560	-	CDS
28	LOC_Os05g19410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11272469	11277043	+	CDS,promoter,downstream
28	LOC_Os07g36030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	21553599	21556637	+	CDS,promoter
28	LOC_Os09g18370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11273886	11277583	-	CDS,downstream
28	LOC_Os08g10200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5912083	5913030	-	CDS,promoter,downstream
28	LOC_Os10g06640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3445488	3449905	+	CDS,downstream
28	LOC_Os01g10380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	5463110	5466442	+	CDS,promoter,downstream
28	LOC_Os07g19274	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11404211	11408909	+	CDS,downstream
28	LOC_Os03g30190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17224183	17227292	-	CDS,promoter
28	LOC_Os12g14170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8042153	8045455	-	CDS,promoter,downstream
28	LOC_Os05g01130	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	105273	109494	+	CDS
28	LOC_Os01g05730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2734509	2736830	-	CDS
28	LOC_Os09g03160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1509792	1513205	-	CDS,promoter
28	LOC_Os12g35410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21499734	21505180	-	CDS,promoter,downstream
28	LOC_Os05g27710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16081398	16083182	-	CDS,promoter,downstream
28	LOC_Os07g24750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14071470	14073898	+	CDS,promoter,downstream
28	LOC_Os08g29420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18033568	18036876	-	CDS,promoter
28	LOC_Os11g12090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6731603	6739348	-	CDS,promoter
28	LOC_Os03g31560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18003238	18010289	+	CDS
28	LOC_Os06g33739	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19633177	19634533	+	CDS,promoter,downstream
28	LOC_Os07g15760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9143169	9146364	-	CDS,promoter
28	LOC_Os12g17180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9834609	9837041	+	CDS,promoter,downstream
28	LOC_Os11g24930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13730854	13736816	-	CDS,promoter
28	LOC_Os01g56830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	32821181	32823464	+	CDS,downstream
28	LOC_Os02g37220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22482259	22485830	+	CDS,promoter,downstream
28	LOC_Os07g16900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9932813	9937725	-	CDS,promoter
28	LOC_Os04g14060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7841758	7843497	+	CDS,promoter,downstream
28	LOC_Os07g45620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27232098	27242305	+	CDS,promoter,downstream
28	LOC_Os09g10170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5526640	5532450	+	CDS,promoter,downstream
28	LOC_Os09g24080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14314282	14316116	-	CDS,promoter,downstream
28	LOC_Os09g01880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	595018	596040	-	CDS,promoter
28	LOC_Os07g15310	hypothetical protein	gene	hypothetical protein	chr7	8825744	8826383	+	CDS,promoter,downstream
28	LOC_Os06g24050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14048158	14056908	-	CDS,downstream
28	LOC_Os03g18060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	10061653	10070593	-	CDS
28	LOC_Os06g36640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	21523966	21530876	+	CDS,promoter
28	LOC_Os03g49030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27925076	27928423	+	CDS,downstream
28	LOC_Os06g25860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15108819	15110467	+	CDS
28	LOC_Os02g33260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19761712	19764578	+	CDS,promoter,downstream
28	LOC_Os11g19650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11315047	11318217	-	CDS,promoter,downstream
28	LOC_Os05g16080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9082437	9085488	+	CDS,promoter,downstream
28	LOC_Os07g47740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28514320	28520415	-	CDS,promoter
28	LOC_Os03g22279	unknown	gene	unknown	chr3	12772260	12772624	-	CDS,promoter,downstream
28	LOC_Os06g28070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15937011	15941287	+	CDS,promoter,downstream
28	LOC_Os08g39410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	24914654	24920628	-	CDS,promoter,downstream
28	LOC_Os10g22164	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	11378980	11388142	-	CDS,promoter
28	LOC_Os02g58700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35857810	35860669	+	CDS,promoter,downstream
28	LOC_Os06g32110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18685508	18692226	-	CDS,promoter,downstream
28	LOC_Os04g48910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28986102	28988815	+	CDS,promoter,downstream
28	LOC_Os04g20790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11653537	11662726	-	CDS
28	LOC_Os06g39930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23747418	23753573	+	CDS,promoter
28	LOC_Os09g40022	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	22971743	22975376	+	CDS,promoter,downstream
28	LOC_Os05g19550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11373741	11378830	+	CDS,promoter,downstream
28	LOC_Os05g19400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11270326	11271477	-	CDS,promoter,downstream
28	LOC_Os07g28210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16472862	16477435	-	CDS,promoter
28	LOC_Os11g39230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	22895004	22899787	-	CDS
28	LOC_Os11g14580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8199819	8203868	+	CDS,promoter,downstream
28	LOC_Os04g22790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12893579	12896555	-	CDS,promoter,downstream
28	LOC_Os06g24450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14325222	14327797	+	CDS,promoter,downstream
28	LOC_Os10g20280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10126320	10129880	-	CDS
28	LOC_Os01g36740	expressed protein	gene	expressed protein	chr1	20406593	20408624	-	CDS,downstream
28	LOC_Os12g29800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17781976	17783633	-	CDS,promoter
28	LOC_Os11g16940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9396074	9396343	+	CDS,promoter,downstream
28	LOC_Os03g43220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24096851	24103848	-	CDS,promoter,downstream
28	LOC_Os09g38200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22000708	22005426	-	CDS
28	LOC_Os04g22640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12815105	12817942	-	CDS,promoter,downstream
28	LOC_Os08g28040	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	17076195	17079287	+	CDS,promoter
28	LOC_Os12g12050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6602070	6605019	+	CDS,promoter,downstream
28	LOC_Os04g08832	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4876911	4883184	+	CDS,promoter,downstream
28	LOC_Os07g24540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13971625	13975484	+	CDS,promoter,downstream
28	LOC_Os10g18790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9490715	9493449	-	CDS
28	LOC_Os01g36150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19992547	19993439	+	CDS,promoter,downstream
28	LOC_Os05g32950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	19234148	19237359	-	CDS,promoter,downstream
28	LOC_Os06g35040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20387741	20393686	+	CDS
28	LOC_Os10g13510	transposable element protein, putative, containing Pfam profile: PF03108, MuDR	gene	transposable element protein, putative, containing Pfam profile: PF03108, MuDR	chr10	7321011	7325145	+	CDS,downstream
28	LOC_Os11g27760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15514851	15521285	+	CDS,promoter,downstream
28	LOC_Os08g28130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17161422	17166773	+	CDS,downstream
28	LOC_Os09g03440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1695900	1697489	+	CDS,promoter,downstream
28	LOC_Os09g11040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6128147	6134259	-	CDS,promoter
28	LOC_Os09g11900	expressed protein	gene	expressed protein	chr9	6686845	6690306	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os02g36650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	22122353	22125524	-	CDS,promoter,downstream
28	LOC_Os09g03100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1474141	1477170	+	CDS,promoter,downstream
28	LOC_Os02g51230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	31338395	31343703	+	CDS,promoter
28	LOC_Os01g25402	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14364154	14373303	+	CDS
28	LOC_Os08g15990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9738509	9741720	+	CDS,promoter,downstream
28	LOC_Os03g38880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21602787	21606241	-	CDS,downstream
28	LOC_Os07g26470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	15224726	15226276	-	CDS,promoter,downstream
28	LOC_Os08g24460	hypothetical protein	gene	hypothetical protein	chr8	14774787	14776758	-	CDS,promoter
28	LOC_Os08g30330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18662846	18667220	-	CDS
28	LOC_Os05g24640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14175735	14178844	-	CDS,promoter
28	LOC_Os03g06540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3289075	3293421	+	CDS,promoter
28	LOC_Os07g24430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13907426	13909327	-	CDS,downstream
28	LOC_Os02g25140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14598923	14601242	-	CDS,promoter,downstream
28	LOC_Os06g16860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9761557	9764127	+	CDS,promoter,downstream
28	LOC_Os04g06310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3298956	3300534	+	CDS,promoter,downstream
28	LOC_Os12g37540	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	23003155	23004784	+	CDS,downstream
28	LOC_Os01g46632	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	26551271	26554499	-	CDS,downstream
28	LOC_Os11g15630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8864125	8865270	-	CDS,promoter,downstream
28	LOC_Os12g26710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15645997	15652772	+	CDS,downstream
28	LOC_Os11g26540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14744500	14749856	+	CDS,promoter,downstream
28	LOC_Os10g19338	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9798723	9803011	+	CDS,downstream
28	LOC_Os08g16270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9931262	9934594	-	CDS,promoter,downstream
28	LOC_Os05g44740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	25945094	25951066	-	CDS
28	LOC_Os04g08580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	4660236	4663788	-	CDS,promoter,downstream
28	LOC_Os05g41340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24158070	24159283	-	CDS
28	LOC_Os02g17800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10294469	10296923	-	CDS,promoter,downstream
28	LOC_Os11g23130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12846273	12848229	+	CDS,promoter,downstream
28	LOC_Os06g33750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19636471	19641628	-	CDS,promoter,downstream
28	LOC_Os11g22210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12280531	12282649	+	CDS,promoter,downstream
28	LOC_Os04g35710	hypothetical protein	gene	hypothetical protein	chr4	21590990	21591742	+	CDS
28	LOC_Os02g22460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13411672	13415899	-	CDS
28	LOC_Os02g17140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9814039	9821798	-	CDS,promoter
28	LOC_Os07g35440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21192198	21197039	+	CDS,promoter,downstream
28	LOC_Os04g35330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21311849	21318005	-	CDS
28	LOC_Os07g23480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13260125	13270509	-	CDS
28	LOC_Os06g27900	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr6	15831997	15836327	+	five_prime_UTR,CDS,promoter
28	LOC_Os09g22200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13426804	13429905	+	CDS
28	LOC_Os02g20100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11834516	11840838	-	CDS,promoter,downstream
28	LOC_Os12g16890	PROLM28 - Prolamin precursor, expressed	gene	PROLM28 - Prolamin precursor, expressed	chr12	9686394	9687123	+	three_prime_UTR,promoter,downstream
28	LOC_Os12g19700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11470097	11480691	+	CDS,promoter,downstream
28	LOC_Os06g21640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12481570	12485827	+	CDS
28	LOC_Os09g01830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	568585	573343	-	CDS,promoter,downstream
28	LOC_Os12g26400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15422432	15428045	+	CDS,downstream
28	LOC_Os04g21800	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	12341500	12343124	-	CDS,downstream
28	LOC_Os07g14810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8456864	8462556	+	CDS,downstream
28	LOC_Os07g26780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15465152	15472780	-	CDS,promoter
28	LOC_Os02g24880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14419839	14422070	-	CDS,promoter
28	LOC_Os06g25290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14804867	14806157	-	CDS,promoter,downstream
28	LOC_Os05g17980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10331978	10335445	-	CDS,promoter
28	LOC_Os06g15070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8539489	8540838	+	CDS,promoter,downstream
28	LOC_Os11g17260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9609005	9611938	+	CDS,promoter,downstream
28	LOC_Os09g08900	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr9	4714030	4719860	+	CDS,promoter,downstream
28	LOC_Os12g11970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6549848	6553711	+	CDS,downstream
28	LOC_Os02g36050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	21663912	21667732	-	CDS,downstream
28	LOC_Os03g37710	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	20907839	20909545	-	CDS,promoter
28	LOC_Os05g10280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	5610068	5616399	-	CDS,promoter
28	LOC_Os08g18990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11331130	11335358	-	CDS,promoter,downstream
28	LOC_Os09g23860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14225130	14228705	-	CDS,promoter,downstream
28	LOC_Os12g17060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9762197	9762802	-	CDS,promoter
28	LOC_Os11g19230	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	10986703	10991860	+	CDS
28	LOC_Os09g27780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16899085	16902015	-	CDS,promoter,downstream
28	LOC_Os04g09284	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4927402	4933608	-	CDS,promoter
28	LOC_Os09g07250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3555766	3558573	+	CDS,promoter,downstream
28	LOC_Os09g02480	hypothetical protein	gene	hypothetical protein	chr9	1029014	1030107	-	CDS,promoter,downstream
28	LOC_Os09g06920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3334140	3340666	-	CDS
28	LOC_Os08g25020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	15186550	15188449	-	CDS,promoter,downstream
28	LOC_Os03g23830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13516929	13522625	-	CDS,promoter,downstream
28	LOC_Os01g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13963643	13969104	+	CDS,promoter
28	LOC_Os12g20250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11806973	11810659	+	CDS,promoter,downstream
28	LOC_Os09g21890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13251813	13254142	+	CDS,downstream
28	LOC_Os05g43150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	24983803	24989548	+	CDS
28	LOC_Os09g10430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5696737	5698278	+	CDS,promoter,downstream
28	LOC_Os12g27130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15919245	15922555	+	CDS,promoter,downstream
28	LOC_Os07g10470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	5629994	5633796	-	CDS,downstream
28	LOC_Os05g20670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	12118679	12119467	+	CDS,promoter,downstream
28	LOC_Os04g20140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11209938	11212627	+	CDS,promoter,downstream
28	LOC_Os06g50010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	30281923	30286785	-	CDS,promoter,downstream
28	LOC_Os06g31830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18483909	18486596	+	CDS
28	LOC_Os04g09980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	5362257	5367975	+	CDS
28	LOC_Os03g45510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25679945	25682864	-	CDS,promoter,downstream
28	LOC_Os01g19360	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	10951446	10955265	+	CDS,promoter,downstream
28	LOC_Os03g58220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	33145301	33150288	-	CDS,promoter
28	LOC_Os06g48430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29292401	29298948	+	CDS,promoter
28	LOC_Os08g15980	hypothetical protein	gene	hypothetical protein	chr8	9728571	9729653	-	CDS,promoter
28	LOC_Os01g71890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	41649928	41659017	+	CDS
28	LOC_Os09g01260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	217560	224302	+	CDS,promoter,downstream
28	LOC_Os01g67070	hypothetical protein	gene	hypothetical protein	chr1	38937859	38938416	+	CDS,promoter
28	LOC_Os12g30230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18112942	18114272	+	CDS,promoter,downstream
28	LOC_Os10g17370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8681937	8686606	+	CDS,promoter,downstream
28	LOC_Os04g35950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21744092	21750215	+	CDS
28	LOC_Os02g47460	hypothetical protein	gene	hypothetical protein	chr2	28978398	28979955	-	CDS,promoter
28	LOC_Os02g31170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18661025	18663965	+	CDS,promoter,downstream
28	LOC_Os01g25120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14177442	14181142	-	CDS,downstream
28	LOC_Os08g28640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17494605	17496856	-	CDS,promoter,downstream
28	LOC_Os04g21520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12162069	12163699	+	CDS,promoter,downstream
28	LOC_Os07g25560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	14651525	14654775	+	CDS,downstream
28	LOC_Os06g16940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	9815571	9817613	+	CDS,promoter,downstream
28	LOC_Os05g15910	hypothetical protein	gene	hypothetical protein	chr5	8974881	8977287	-	CDS,downstream
28	LOC_Os07g11240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6186023	6193351	+	CDS,promoter,downstream
28	LOC_Os09g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14288382	14290204	+	CDS,promoter,downstream
28	LOC_Os03g38375	hypothetical protein	gene	hypothetical protein	chr3	21301945	21304639	-	three_prime_UTR,promoter
28	LOC_Os09g01250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	208631	215373	+	CDS,promoter,downstream
28	LOC_Os09g14860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8863337	8866726	-	CDS,promoter
28	LOC_Os10g05550	hypothetical protein	gene	hypothetical protein	chr10	2751501	2752116	+	CDS,promoter,downstream
28	LOC_Os01g33190	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	18271437	18281131	-	CDS
28	LOC_Os05g17870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10273454	10276144	-	CDS,promoter,downstream
28	LOC_Os03g27380	expressed protein	gene	expressed protein	chr3	15681352	15681561	-	CDS,promoter
28	LOC_Os02g30990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18504922	18508694	-	CDS,downstream
28	LOC_Os10g16920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8388425	8390590	-	CDS,promoter
28	LOC_Os06g34580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20111705	20116213	+	CDS,promoter,downstream
28	LOC_Os03g33182	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18980175	18981608	-	CDS,promoter,downstream
28	LOC_Os11g42630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25201465	25207891	+	CDS,promoter,downstream
28	LOC_Os04g37840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22309536	22314086	-	CDS,promoter,downstream
28	LOC_Os10g16880	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	8340642	8345506	+	five_prime_UTR,promoter
28	LOC_Os07g10760	hypothetical protein	gene	hypothetical protein	chr7	5836455	5837212	-	CDS,promoter,downstream
28	LOC_Os01g54490	osFTL9  FT-Like9 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein	gene	osFTL9  FT-Like9 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein	chr1	31342320	31344478	+	CDS,promoter,downstream
28	LOC_Os05g17540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10074931	10080102	+	CDS,promoter,downstream
28	LOC_Os08g31400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	19408603	19411948	-	CDS,promoter,downstream
28	LOC_Os04g23470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	13405664	13412706	-	CDS,promoter
28	LOC_Os06g26160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15301894	15304365	-	CDS,promoter,downstream
28	LOC_Os09g37150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	21429663	21432262	-	CDS,downstream
28	LOC_Os06g08070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	3902683	3909686	-	CDS
28	LOC_Os03g41850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	23237760	23238896	-	CDS,promoter,downstream
28	LOC_Os04g49120	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	29098147	29101031	-	CDS,promoter
28	LOC_Os11g19080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10868254	10871333	+	CDS,promoter
28	LOC_Os04g04700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2254261	2255957	-	CDS,downstream
28	LOC_Os10g14295	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7756939	7762653	-	CDS,promoter
28	LOC_Os03g46620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	26380966	26382190	-	CDS,promoter,downstream
28	LOC_Os01g35860	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr1	19854168	19857477	+	CDS,downstream
28	LOC_Os10g04250	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1979533	1982644	+	CDS,promoter,downstream
28	LOC_Os07g44340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26491431	26494560	-	CDS,promoter
28	LOC_Os05g34330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	20272978	20288753	+	CDS,downstream
28	LOC_Os09g03180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1523380	1528700	+	CDS,promoter
28	LOC_Os09g04690	hypothetical protein	gene	hypothetical protein	chr9	2496167	2496809	-	CDS,downstream
28	LOC_Os07g42060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25174408	25180564	-	CDS,promoter
28	LOC_Os01g25650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14534554	14541945	+	CDS,downstream
28	LOC_Os11g03030	unknown	gene	unknown	chr11	1052878	1061613	+	CDS,three_prime_UTR,downstream
28	LOC_Os09g23880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	14238534	14241159	-	CDS,promoter
28	LOC_Os08g26720	hypothetical protein	gene	hypothetical protein	chr8	16248822	16250618	+	CDS,promoter
28	LOC_Os08g27759	expressed protein	gene	expressed protein	chr8	16909004	16914253	-	CDS
28	LOC_Os04g27210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15908900	15912355	+	CDS
28	LOC_Os02g28530	hypothetical protein	gene	hypothetical protein	chr2	16875571	16877824	-	CDS,promoter,downstream
28	LOC_Os03g46450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	26270096	26274064	-	CDS
28	LOC_Os08g38640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	24413715	24418011	+	CDS
28	LOC_Os11g11840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6567675	6569314	+	CDS,promoter,downstream
28	LOC_Os03g33960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19375338	19376033	+	CDS,promoter
28	LOC_Os11g17200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	9576353	9580261	-	CDS
28	LOC_Os06g03370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1283505	1286411	-	CDS,promoter
28	LOC_Os09g03560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1746340	1749250	-	CDS,promoter
28	LOC_Os12g32320	expressed protein	gene	expressed protein	chr12	19476984	19482240	+	CDS,downstream
28	LOC_Os08g33860	zinc finger, C3HC4 type, putative, expressed	gene	zinc finger, C3HC4 type, putative, expressed	chr8	21192146	21197417	+	CDS,downstream
28	LOC_Os06g14140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	7882644	7888739	-	CDS,promoter
28	LOC_Os10g30000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	15499743	15501635	+	CDS,promoter,downstream
28	LOC_Os02g19370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11312071	11313481	-	CDS,promoter
28	LOC_Os12g14390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8203759	8205880	-	CDS,promoter,downstream
28	LOC_Os02g22240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13261733	13263250	-	CDS,promoter,downstream
28	LOC_Os03g56350	hypothetical protein	gene	hypothetical protein	chr3	32111328	32111876	+	CDS,downstream
28	LOC_Os08g13170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7824145	7831582	-	CDS
28	LOC_Os08g32580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20173937	20179877	+	CDS,promoter,downstream
28	LOC_Os12g26080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15146443	15151689	-	CDS,promoter
28	LOC_Os08g11830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6933982	6938291	-	CDS
28	LOC_Os09g07060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3418744	3421708	+	CDS,promoter,downstream
28	LOC_Os12g18479	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10685188	10686234	-	CDS,promoter,downstream
28	LOC_Os12g23374	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13221389	13225196	-	CDS,promoter,downstream
28	LOC_Os02g29610	hypothetical protein	gene	hypothetical protein	chr2	17609324	17610432	-	CDS,promoter,downstream
28	LOC_Os09g02950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1380149	1387439	+	CDS,promoter,downstream
28	LOC_Os11g27850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15562219	15566643	+	CDS,promoter,downstream
28	LOC_Os08g20060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12026737	12030669	-	CDS,promoter,downstream
28	LOC_Os11g35140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20134054	20137740	+	CDS,promoter
28	LOC_Os11g23050	hypothetical protein	gene	hypothetical protein	chr11	12790690	12793296	+	CDS,promoter
28	LOC_Os04g29830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17609074	17612516	-	CDS
28	LOC_Os07g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12686634	12693117	+	CDS,promoter,downstream
28	LOC_Os09g06340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2975750	2976142	+	CDS,promoter,downstream
28	LOC_Os11g26460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14689301	14695633	+	CDS,promoter,downstream
28	LOC_Os04g22200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12564382	12570511	-	CDS,promoter,downstream
28	LOC_Os10g24200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12324110	12327273	-	CDS,promoter,downstream
28	LOC_Os01g14290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	8005875	8008338	+	CDS
28	LOC_Os04g17010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9302990	9308537	-	CDS,promoter,downstream
28	LOC_Os02g19310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11284509	11287664	-	CDS,promoter,downstream
28	LOC_Os11g43120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25545872	25547122	-	CDS,promoter,downstream
28	LOC_Os11g28030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15653548	15655431	+	CDS,downstream
28	LOC_Os08g11790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6908087	6914730	-	CDS
28	LOC_Os11g08550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	4510000	4515641	-	CDS,promoter,downstream
28	LOC_Os06g42260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	25379060	25382437	+	CDS,promoter
28	LOC_Os07g25290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14441915	14449068	+	CDS,promoter
28	LOC_Os07g06274	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3049234	3055329	-	CDS,promoter
28	LOC_Os05g32030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	18600923	18605143	+	CDS,promoter,downstream
28	LOC_Os12g24260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13830259	13838542	+	CDS,downstream
28	LOC_Os01g15370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8611672	8614467	+	CDS,promoter,downstream
28	LOC_Os06g18940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10763396	10766597	+	CDS,promoter,downstream
28	LOC_Os12g23300	hypothetical protein	gene	hypothetical protein	chr12	13193777	13194523	-	CDS,promoter
28	LOC_Os05g27150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15740971	15743241	-	CDS,promoter
28	LOC_Os09g23957	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14277540	14278277	-	three_prime_UTR,promoter,downstream
28	LOC_Os07g18690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11040808	11046808	-	CDS,promoter,downstream
28	LOC_Os05g18180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10447725	10449125	+	CDS,promoter,downstream
28	LOC_Os05g23280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13232444	13234825	+	CDS,promoter,downstream
28	LOC_Os11g06790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3323505	3324213	+	CDS,promoter
28	LOC_Os08g32250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19976460	19979024	-	CDS,promoter,downstream
28	LOC_Os01g49950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	28698851	28708982	+	CDS
28	LOC_Os09g16430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10042019	10048364	-	CDS,promoter,downstream
28	LOC_Os07g29740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17479702	17484563	+	CDS,promoter
28	LOC_Os03g33310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19051006	19051848	+	CDS,promoter,downstream
28	LOC_Os08g27930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17022196	17023903	+	CDS,promoter,downstream
28	LOC_Os07g14790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8442393	8445255	+	CDS,promoter
28	LOC_Os12g26560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15521690	15526966	+	CDS
28	LOC_Os09g10160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5521125	5524327	-	CDS,promoter,downstream
28	LOC_Os04g20870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11704677	11706158	+	CDS,promoter,downstream
28	LOC_Os04g47660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28095700	28097824	+	CDS
28	LOC_Os07g11420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6282585	6286045	+	CDS,promoter,downstream
28	LOC_Os09g07110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3449033	3453056	+	CDS,promoter
28	LOC_Os02g10270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	5384499	5392658	+	CDS,promoter,downstream
28	LOC_Os08g01008	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	3133	3936	+	CDS,promoter,downstream
28	LOC_Os08g20849	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12502875	12509597	-	CDS,promoter,downstream
28	LOC_Os01g40150	eukaryotic translation initiation factor 5B, putative, expressed	gene	eukaryotic translation initiation factor 5B, putative, expressed	chr1	22643978	22649100	+	CDS
28	LOC_Os06g27940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15852050	15854500	+	CDS,promoter,downstream
28	LOC_Os10g14990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7861060	7863422	+	CDS,promoter,downstream
28	LOC_Os04g17020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	9315094	9320566	+	CDS,downstream
28	LOC_Os04g15930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8645858	8650369	-	CDS,promoter,downstream
28	LOC_Os12g11290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6080036	6086708	+	CDS,promoter,downstream
28	LOC_Os02g51960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	31812629	31815996	-	CDS,promoter,downstream
28	LOC_Os08g16420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10035983	10038911	+	CDS,promoter
28	LOC_Os07g24549	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13981028	13982340	-	CDS,promoter
28	LOC_Os05g18070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10394427	10397685	-	CDS,downstream
28	LOC_Os06g34680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20149649	20150755	-	CDS,promoter,downstream
28	LOC_Os07g20620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11916092	11919748	+	CDS,promoter
28	LOC_Os06g28370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	16132658	16133665	+	CDS,promoter,downstream
28	LOC_Os12g17100	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9789225	9793870	-	CDS,promoter,downstream
28	LOC_Os03g38430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21329295	21331031	-	CDS,promoter,downstream
28	LOC_Os12g26260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15302262	15305271	-	CDS,promoter
28	LOC_Os09g08500	hypothetical protein	gene	hypothetical protein	chr9	4435298	4437641	+	CDS,downstream
28	LOC_Os01g20090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11403234	11406566	-	CDS,promoter
28	LOC_Os05g18760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10875081	10881038	+	CDS,downstream
28	LOC_Os10g17300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8631278	8634489	+	CDS,promoter,downstream
28	LOC_Os12g22350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	12614134	12614611	-	CDS,promoter,downstream
28	LOC_Os03g33837	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19330579	19331154	-	CDS,promoter,downstream
28	LOC_Os07g45770	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	27323706	27325605	-	CDS,promoter
28	LOC_Os04g19710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10990725	10993151	+	CDS,promoter,downstream
28	LOC_Os04g53050	disease resistance RPP13-like protein 1, putative	gene	disease resistance RPP13-like protein 1, putative	chr4	31415016	31419096	+	CDS
28	LOC_Os08g11410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6694397	6695264	-	CDS,promoter,downstream
28	LOC_Os01g36180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20009103	20011962	-	CDS,promoter
28	LOC_Os06g49560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	30011987	30015025	-	CDS,promoter,downstream
28	LOC_Os01g37570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21002563	21004918	-	CDS,promoter,downstream
28	LOC_Os03g41800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	23212273	23216266	+	CDS,promoter
28	LOC_Os04g41730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	24549202	24552857	-	CDS,promoter
28	LOC_Os06g25030	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	14652218	14655146	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os07g19200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11366728	11374083	+	CDS,promoter,downstream
28	LOC_Os10g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	1371264	1375685	+	CDS,promoter,downstream
28	LOC_Os07g42980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	25746095	25750216	-	CDS,promoter
28	LOC_Os12g18190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10491716	10501902	+	CDS,promoter,downstream
28	LOC_Os06g42010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25220588	25224481	-	CDS,promoter,downstream
28	LOC_Os07g06240	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	3033375	3034255	+	CDS,promoter
28	LOC_Os10g03970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1805706	1808439	-	CDS
28	LOC_Os04g06160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3202815	3203986	-	CDS,promoter,downstream
28	LOC_Os12g11340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6111643	6116727	-	CDS
28	LOC_Os01g61490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	35567608	35575176	+	CDS,promoter,downstream
28	LOC_Os11g12210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6803090	6809844	-	CDS,promoter
28	LOC_Os11g22320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12331110	12331822	-	CDS,downstream
28	LOC_Os12g32770	expressed protein	gene	expressed protein	chr12	19763502	19765561	+	CDS,three_prime_UTR,downstream
28	LOC_Os07g27390	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	15937110	15940065	-	CDS,three_prime_UTR,five_prime_UTR
28	LOC_Os02g49120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30028827	30033963	-	CDS,promoter,downstream
28	LOC_Os12g35520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21566128	21566902	-	CDS,promoter,downstream
28	LOC_Os07g17790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10520941	10524554	-	CDS,promoter,downstream
28	LOC_Os05g27690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16071334	16074938	-	CDS,downstream
28	LOC_Os03g52100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	29907277	29910356	+	CDS,promoter,downstream
28	LOC_Os04g19540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10864777	10876503	-	CDS,promoter,downstream
28	LOC_Os06g33150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19291435	19297893	+	CDS
28	LOC_Os03g59980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34112885	34114047	-	CDS,promoter
28	LOC_Os08g05920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3191392	3195623	+	CDS,downstream
28	LOC_Os05g19740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11513447	11516317	+	CDS,promoter,downstream
28	LOC_Os01g29710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	16648502	16653345	+	CDS,promoter,downstream
28	LOC_Os11g12100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6741774	6747033	-	CDS
28	LOC_Os02g34340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	20539250	20541612	+	CDS,promoter,downstream
28	LOC_Os12g34580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	20925166	20929077	+	CDS,downstream
28	LOC_Os04g25050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14438950	14441189	-	CDS,promoter
28	LOC_Os09g10240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5575424	5582937	+	CDS,downstream
28	LOC_Os06g36720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21618568	21620890	+	CDS
28	LOC_Os03g49330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	28069780	28073469	+	CDS
28	LOC_Os06g25970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15206796	15207686	+	CDS,promoter,downstream
28	LOC_Os03g29660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16909417	16912329	-	CDS,promoter,downstream
28	LOC_Os06g39190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23264599	23269781	+	CDS,downstream
28	LOC_Os07g13560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7772011	7778420	+	CDS,promoter,downstream
28	LOC_Os01g57180	hypothetical protein	gene	hypothetical protein	chr1	33041650	33042813	-	CDS,promoter
28	LOC_Os07g40210	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr7	24110362	24113827	-	CDS,promoter
28	LOC_Os08g34770	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr8	21854797	21858392	+	CDS,downstream
28	LOC_Os08g23390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14138291	14140095	+	CDS
28	LOC_Os10g24540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12521058	12525479	+	CDS,promoter,downstream
28	LOC_Os05g12740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	7308112	7311176	+	CDS
28	LOC_Os07g13140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7523019	7531462	-	CDS,promoter
28	LOC_Os01g20150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11445380	11448418	+	CDS,promoter
28	LOC_Os09g10030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5462372	5468063	+	CDS,promoter
28	LOC_Os07g18060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10683020	10689067	-	CDS,downstream
28	LOC_Os03g26690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15236751	15241481	+	CDS,promoter,downstream
28	LOC_Os11g16840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9343707	9346624	-	CDS,promoter,downstream
28	LOC_Os07g14980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8591842	8593002	-	CDS,promoter
28	LOC_Os07g45420	hypothetical protein	gene	hypothetical protein	chr7	27096460	27097577	-	CDS,downstream
28	LOC_Os10g30930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16063959	16064897	+	CDS,promoter,downstream
28	LOC_Os06g11460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6065748	6070866	+	CDS,promoter,downstream
28	LOC_Os04g19240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10673791	10677104	+	CDS,promoter,downstream
28	LOC_Os07g07600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	3805685	3811449	-	CDS
28	LOC_Os07g34810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20857960	20864115	-	CDS
28	LOC_Os11g20000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11502101	11503759	-	CDS,promoter,downstream
28	LOC_Os09g07890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4007882	4013467	-	CDS,promoter,downstream
28	LOC_Os10g09090	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr10	4930858	4933927	-	three_prime_UTR,promoter
28	LOC_Os07g43630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26114823	26120771	+	CDS,promoter,downstream
28	LOC_Os02g40480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	24539576	24542719	-	CDS
28	LOC_Os08g13750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8194123	8200218	+	CDS,downstream
28	LOC_Os05g26250	PROLM3 - Prolamin precursor, putative, expressed	gene	PROLM3 - Prolamin precursor, putative, expressed	chr5	15212807	15220648	+	three_prime_UTR,promoter,downstream
28	LOC_Os09g01230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	191970	196392	+	CDS,promoter,downstream
28	LOC_Os09g07040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3411226	3411534	+	CDS,promoter,downstream
28	LOC_Os08g15810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9604525	9605565	-	CDS,promoter,downstream
28	LOC_Os11g37700	pleiotropic drug resistance protein, putative, expressed	gene	pleiotropic drug resistance protein, putative, expressed	chr11	21806691	21816309	-	CDS,three_prime_UTR
28	LOC_Os10g02860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1148013	1152252	-	CDS,promoter,downstream
28	LOC_Os04g11770	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6438863	6443085	-	CDS,promoter
28	LOC_Os03g32350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18509254	18510489	+	CDS,promoter
28	LOC_Os12g16060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9151798	9158333	-	CDS,promoter,downstream
28	LOC_Os07g09180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	4787767	4791071	-	CDS,promoter
28	LOC_Os08g36890	expressed protein	gene	expressed protein	chr8	23304524	23307871	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g07450	S-domain receptor-like protein kinase, putative, expressed	gene	S-domain receptor-like protein kinase, putative, expressed	chr5	3970947	3973361	-	CDS,promoter
28	LOC_Os12g18290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10549750	10551895	-	CDS,promoter,downstream
28	LOC_Os07g02860	hypothetical protein	gene	hypothetical protein	chr7	1068314	1069835	-	CDS,promoter
28	LOC_Os07g08990	hypothetical protein	gene	hypothetical protein	chr7	4676806	4677070	-	CDS,promoter,downstream
28	LOC_Os05g19330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11229192	11233742	+	CDS,promoter,downstream
28	LOC_Os01g28960	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	16218589	16219954	-	CDS,downstream
28	LOC_Os11g09414	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5043622	5049760	-	CDS,downstream
28	LOC_Os05g09040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	5012859	5019014	-	CDS,promoter
28	LOC_Os05g15250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	8649122	8653328	-	CDS,promoter
28	LOC_Os06g48130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29118043	29119856	+	CDS,promoter,downstream
28	LOC_Os07g20380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11767338	11767823	+	CDS,promoter,downstream
28	LOC_Os08g19860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11900228	11902581	+	CDS,downstream
28	LOC_Os12g35810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	21792079	21796076	+	CDS
28	LOC_Os07g27834	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16238667	16246838	-	CDS,promoter
28	LOC_Os04g04090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1882629	1886847	+	CDS,promoter,downstream
28	LOC_Os08g17420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10671809	10676202	+	CDS
28	LOC_Os10g36990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	19743679	19749853	-	CDS,promoter
28	LOC_Os05g28260	hypothetical protein	gene	hypothetical protein	chr5	16486624	16489090	+	CDS,promoter
28	LOC_Os12g30860	unknown	gene	unknown	chr12	18511855	18512230	+	CDS,promoter,downstream
28	LOC_Os02g01040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	22133	24960	-	CDS,downstream
28	LOC_Os11g23960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13106849	13116219	+	CDS,promoter,downstream
28	LOC_Os06g37899	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22440991	22441458	+	CDS,promoter
28	LOC_Os01g29320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16424757	16429060	+	CDS,downstream
28	LOC_Os06g34500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	20076971	20079548	-	CDS,promoter,downstream
28	LOC_Os07g22330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12527359	12528748	-	CDS,promoter,downstream
28	LOC_Os05g24840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14339315	14342014	+	CDS,promoter,downstream
28	LOC_Os03g41840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23232902	23234242	-	CDS,promoter,downstream
28	LOC_Os07g25170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14382320	14382601	-	CDS,promoter,downstream
28	LOC_Os08g26690	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	16226110	16230232	+	CDS,promoter,downstream
28	LOC_Os02g47540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29036887	29043250	+	CDS
28	LOC_Os03g36120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20037082	20039696	+	CDS,promoter,downstream
28	LOC_Os12g36380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22236585	22239727	+	CDS,promoter
28	LOC_Os05g14520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8216619	8222102	-	CDS,promoter,downstream
28	LOC_Os05g34200	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	20163085	20168209	-	CDS,promoter,downstream
28	LOC_Os12g15060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8591396	8599351	-	CDS,promoter,downstream
28	LOC_Os04g06000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3099084	3108189	-	CDS,promoter
28	LOC_Os06g31550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18347195	18347823	+	CDS,promoter,downstream
28	LOC_Os04g03490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1503613	1508065	-	CDS
28	LOC_Os02g49890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30475960	30478891	+	CDS,promoter,downstream
28	LOC_Os06g02304	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	757634	764184	-	CDS,promoter,downstream
28	LOC_Os01g35460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19622382	19622944	+	CDS,promoter,downstream
28	LOC_Os04g48660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28824076	28830211	-	CDS,promoter
28	LOC_Os12g29160	LTPL105 - Protease inhibitor/seed storage/LTP family protein precursor, putative	gene	LTPL105 - Protease inhibitor/seed storage/LTP family protein precursor, putative	chr12	17257589	17262164	+	CDS,promoter
28	LOC_Os07g11200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6167506	6170030	-	CDS,downstream
28	LOC_Os12g37470	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	22962177	22964983	-	CDS
28	LOC_Os01g59210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34204192	34204782	+	CDS,promoter,downstream
28	LOC_Os07g32370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	19238880	19240548	-	CDS,promoter,downstream
28	LOC_Os04g59250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	35049132	35055090	+	CDS
28	LOC_Os11g43400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	25729051	25731129	+	CDS
28	LOC_Os02g19580	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	11439762	11442342	+	CDS,promoter,downstream
28	LOC_Os06g39360	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr6	23354098	23360598	-	CDS
28	LOC_Os11g44830	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	26657305	26663391	-	CDS,downstream
28	LOC_Os04g26010	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	15127327	15130529	+	CDS,promoter,downstream
28	LOC_Os02g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13903955	13906103	-	CDS,promoter,downstream
28	LOC_Os05g29120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	17045631	17051369	+	CDS,promoter,downstream
28	LOC_Os07g30880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18275987	18282709	-	CDS
28	LOC_Os02g42030	hypothetical protein	gene	hypothetical protein	chr2	25256130	25256489	+	CDS,downstream
28	LOC_Os12g34480	hypothetical protein	gene	hypothetical protein	chr12	20843401	20843868	-	CDS,downstream
28	LOC_Os09g13200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7606693	7609056	+	CDS,promoter,downstream
28	LOC_Os12g11600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6290951	6297967	+	CDS,promoter
28	LOC_Os12g34210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	20699632	20710898	+	CDS
28	LOC_Os11g25190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13891750	13893542	-	CDS,promoter,downstream
28	LOC_Os04g24998	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14393456	14394805	+	CDS,promoter,downstream
28	LOC_Os11g22780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12639651	12640397	+	CDS,promoter,downstream
28	LOC_Os11g22700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12598628	12600313	-	CDS,promoter,downstream
28	LOC_Os09g01500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	367961	368491	+	CDS,promoter,downstream
28	LOC_Os04g19020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10558153	10559364	-	CDS,promoter,downstream
28	LOC_Os03g32860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18800156	18802635	-	CDS,promoter
28	LOC_Os09g04339	expressed protein	gene	expressed protein	chr9	2296896	2305688	-	CDS
28	LOC_Os12g24970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14331141	14332552	-	CDS,promoter,downstream
28	LOC_Os04g12170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6701564	6704230	-	CDS
28	LOC_Os04g22190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12560738	12563948	+	CDS,promoter,downstream
28	LOC_Os05g24710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	14259655	14265048	-	CDS,promoter
28	LOC_Os12g05490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2508934	2514637	+	CDS,downstream
28	LOC_Os01g60880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35207927	35214235	+	CDS,downstream
28	LOC_Os07g15260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	8796321	8800169	+	CDS,downstream
28	LOC_Os04g06660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3501318	3502667	-	CDS,promoter,downstream
28	LOC_Os12g10420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5521618	5523731	+	CDS,promoter,downstream
28	LOC_Os12g20420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	11920621	11923876	-	CDS
28	LOC_Os08g11110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6530149	6539432	-	CDS,promoter,downstream
28	LOC_Os03g51850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	29728698	29731470	+	CDS,downstream
28	LOC_Os01g35640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19739154	19742922	+	CDS,promoter,downstream
28	LOC_Os10g25750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13269630	13272750	-	CDS,promoter,downstream
28	LOC_Os02g45500	hypothetical protein	gene	hypothetical protein	chr2	27674372	27675506	+	CDS,promoter,downstream
28	LOC_Os04g32730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19556258	19561859	-	CDS
28	LOC_Os08g21170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12643866	12647269	+	CDS,downstream
28	LOC_Os01g39050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21948895	21955446	-	CDS
28	LOC_Os07g24850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14128586	14132005	+	CDS,promoter
28	LOC_Os04g45770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26902756	26905716	+	CDS,promoter,downstream
28	LOC_Os08g19180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	11469143	11471885	+	CDS,downstream
28	LOC_Os12g26630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15591736	15595039	-	CDS,promoter
28	LOC_Os08g01570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	334242	336822	-	CDS,promoter,downstream
28	LOC_Os09g02970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1395123	1395528	-	CDS,promoter,downstream
28	LOC_Os08g29240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17923189	17927317	+	CDS,downstream
28	LOC_Os07g36720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21996657	22001273	+	CDS,promoter
28	LOC_Os06g25200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14739129	14741709	+	CDS,promoter,downstream
28	LOC_Os02g40390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24445884	24452039	-	CDS
28	LOC_Os05g47920	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	27404945	27410807	-	CDS
28	LOC_Os09g18410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	11294780	11297489	+	CDS,promoter
28	LOC_Os08g31350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	19386700	19390328	-	CDS,downstream
28	LOC_Os03g39450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21920088	21925466	+	CDS,promoter,downstream
28	LOC_Os12g40610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	25100961	25104276	-	CDS,promoter
28	LOC_Os11g28440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	15909888	15911328	+	CDS
28	LOC_Os10g40240	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	21482810	21486199	+	CDS,three_prime_UTR,downstream
28	LOC_Os02g08280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	4396929	4400652	-	CDS,downstream
28	LOC_Os06g23860	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	13938185	13942548	-	CDS
28	LOC_Os08g14670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	8821620	8829746	+	CDS,downstream
28	LOC_Os10g17860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8960819	8962123	+	CDS,promoter,downstream
28	LOC_Os01g28744	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16100877	16103754	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os06g23200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13548049	13550508	-	CDS,promoter,downstream
28	LOC_Os05g23380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	13295756	13301911	-	CDS
28	LOC_Os03g33600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19205037	19207158	-	CDS,promoter,downstream
28	LOC_Os11g28570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16011071	16014073	-	CDS,promoter
28	LOC_Os07g28670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16787252	16794278	-	CDS,promoter,downstream
28	LOC_Os06g25050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14657163	14660839	-	CDS,promoter,downstream
28	LOC_Os12g37140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	22726924	22731947	+	CDS,promoter
28	LOC_Os04g34680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	20804418	20806363	-	CDS,downstream
28	LOC_Os08g19250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	11511334	11517814	-	CDS,downstream
28	LOC_Os07g33450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19988143	19995363	+	CDS
28	LOC_Os02g14410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	7910272	7917027	-	CDS,promoter,downstream
28	LOC_Os01g41960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23786916	23795928	+	CDS
28	LOC_Os10g09610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5206619	5212791	-	CDS,promoter
28	LOC_Os01g21190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	11816784	11823047	-	CDS,downstream
28	LOC_Os12g15130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8628222	8629619	-	CDS,promoter,downstream
28	LOC_Os01g45220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25659306	25662245	-	CDS,promoter,downstream
28	LOC_Os02g14550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8021940	8026355	-	CDS,downstream
28	LOC_Os07g08450	expressed protein	gene	expressed protein	chr7	4348037	4352865	-	CDS
28	LOC_Os10g06350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3269549	3272739	-	CDS,promoter,downstream
28	LOC_Os05g23760	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr5	13591851	13592303	-	CDS,promoter,downstream
28	LOC_Os09g10290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	5604607	5606833	-	CDS,promoter
28	LOC_Os03g19104	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	10696683	10704141	+	CDS,downstream
28	LOC_Os09g24130	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14330857	14331587	-	three_prime_UTR,promoter,downstream
28	LOC_Os09g09130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4881645	4887619	-	CDS,promoter,downstream
28	LOC_Os10g24170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12310562	12312221	-	CDS,promoter
28	LOC_Os08g38940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	24604857	24609399	-	CDS,downstream
28	LOC_Os05g35120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	20796089	20803248	-	CDS,promoter
28	LOC_Os02g20050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	11801936	11805226	+	CDS,downstream
28	LOC_Os11g03090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1098684	1104839	+	CDS
28	LOC_Os08g26650	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	16197741	16200506	+	CDS,promoter,downstream
28	LOC_Os11g22030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12204920	12207521	+	CDS,promoter,downstream
28	LOC_Os10g26960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14124628	14127193	+	CDS,downstream
28	LOC_Os02g30290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	18005548	18013551	-	CDS,promoter
28	LOC_Os01g22050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12380702	12388140	-	CDS,promoter,downstream
28	LOC_Os07g29880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17584607	17588035	-	CDS,downstream
28	LOC_Os02g17100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9790302	9793607	+	CDS,downstream
28	LOC_Os11g41450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24402461	24404064	-	CDS,promoter
28	LOC_Os01g45810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	26019653	26025808	-	CDS,promoter
28	LOC_Os12g35120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	21335621	21338496	+	CDS,promoter,downstream
28	LOC_Os11g31050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17597503	17602001	+	CDS
28	LOC_Os12g35130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21341691	21347262	-	CDS,downstream
28	LOC_Os09g08870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4683578	4689688	-	CDS,promoter,downstream
28	LOC_Os12g16730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9586723	9587697	+	CDS,promoter,downstream
28	LOC_Os10g13580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	7370071	7371525	+	CDS,downstream
28	LOC_Os11g26440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14676595	14678847	+	CDS,promoter,downstream
28	LOC_Os08g30090	hypothetical protein	gene	hypothetical protein	chr8	18494256	18495084	-	CDS,downstream
28	LOC_Os09g04750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2532705	2533927	+	CDS,downstream
28	LOC_Os01g35880	hypothetical protein	gene	hypothetical protein	chr1	19863662	19864933	+	CDS,downstream
28	LOC_Os07g16490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9662000	9664924	-	CDS,promoter,downstream
28	LOC_Os10g18550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9336865	9340061	+	CDS,downstream
28	LOC_Os01g73870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	42803858	42809904	+	CDS,promoter,downstream
28	LOC_Os11g10440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5683780	5687525	-	CDS,downstream
28	LOC_Os02g46580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	28395516	28400717	+	CDS,promoter,downstream
28	LOC_Os05g16400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9300366	9306685	-	CDS
28	LOC_Os11g18240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10274820	10279940	+	CDS,promoter,downstream
28	LOC_Os08g22990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13820670	13826694	-	CDS,downstream
28	LOC_Os07g29720	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	17470141	17471079	-	CDS,promoter,downstream
28	LOC_Os10g31200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	16285072	16288364	+	CDS,promoter,downstream
28	LOC_Os09g02470	hypothetical protein	gene	hypothetical protein	chr9	1025975	1027866	+	CDS,promoter,downstream
28	LOC_Os09g06420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3021967	3023367	+	CDS,promoter,downstream
28	LOC_Os01g58570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33852415	33856965	-	CDS,promoter,downstream
28	LOC_Os07g11270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6210678	6213854	-	CDS,promoter,downstream
28	LOC_Os04g54650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32310567	32318436	-	CDS,promoter
28	LOC_Os12g28930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17098680	17104161	-	CDS,promoter,downstream
28	LOC_Os03g33610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19211272	19212546	-	CDS
28	LOC_Os01g36772	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20426701	20428554	-	CDS,downstream
28	LOC_Os09g03410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1681051	1684308	-	CDS,promoter,downstream
28	LOC_Os04g23930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13676168	13679714	+	CDS,promoter
28	LOC_Os04g42634	hypothetical protein	gene	hypothetical protein	chr4	25040050	25043656	-	CDS,promoter
28	LOC_Os11g03960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	1591314	1599431	-	CDS,downstream
28	LOC_Os11g23010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12767741	12771146	+	CDS,downstream
28	LOC_Os12g29230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17304572	17310825	+	CDS,downstream
28	LOC_Os11g43660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	25879199	25884175	+	CDS,downstream
28	LOC_Os04g58660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	34700486	34702118	-	CDS,promoter
28	LOC_Os02g27050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	15896400	15898346	+	CDS,promoter,downstream
28	LOC_Os12g13770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7774525	7782831	-	CDS
28	LOC_Os11g22690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12595717	12597941	+	CDS,promoter,downstream
28	LOC_Os07g22560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12693487	12696219	-	CDS,promoter,downstream
28	LOC_Os02g17550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	10100554	10104501	+	CDS,promoter
28	LOC_Os01g32530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17839924	17842687	+	CDS
28	LOC_Os12g06590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	3194787	3195905	+	CDS,promoter,downstream
28	LOC_Os09g15300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	9325003	9333887	-	CDS,promoter
28	LOC_Os02g45790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	27886218	27892335	+	CDS,downstream
28	LOC_Os03g22290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	12774707	12775474	+	CDS,promoter,downstream
28	LOC_Os02g28020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	16585839	16589351	-	CDS,promoter
28	LOC_Os04g01439	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	299121	309416	-	CDS,promoter
28	LOC_Os09g20760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12506674	12508442	-	CDS
28	LOC_Os07g25230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14419666	14422601	-	CDS,promoter,downstream
28	LOC_Os06g38090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22525690	22534533	-	CDS
28	LOC_Os07g24690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14042831	14045768	+	CDS,promoter,downstream
28	LOC_Os12g13920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7900477	7911265	+	CDS,downstream
28	LOC_Os12g21580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12126321	12128308	+	CDS,downstream
28	LOC_Os03g36580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20282910	20285712	-	CDS,promoter,downstream
28	LOC_Os03g25570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14626100	14626813	+	CDS,promoter,downstream
28	LOC_Os06g31840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18492008	18497388	+	CDS
28	LOC_Os12g22410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12650001	12651266	-	CDS,promoter,downstream
28	LOC_Os07g15790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9166492	9169534	+	CDS,promoter,downstream
28	LOC_Os09g11600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6475250	6477992	+	CDS,downstream
28	LOC_Os11g17280	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	9615817	9621106	-	CDS,promoter,downstream
28	LOC_Os02g22710	hypothetical protein	gene	hypothetical protein	chr2	13530080	13532078	-	CDS,promoter,downstream
28	LOC_Os07g25300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14451141	14452685	-	CDS,downstream
28	LOC_Os11g30720	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	17424408	17425657	+	CDS,downstream
28	LOC_Os12g01340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	189607	192494	-	CDS,promoter,downstream
28	LOC_Os04g18640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10293388	10298226	-	CDS,promoter,downstream
28	LOC_Os06g17350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10054983	10059671	+	CDS,promoter,downstream
28	LOC_Os07g13760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7893648	7896207	-	CDS,promoter,downstream
28	LOC_Os10g34650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	18392038	18397829	-	CDS
28	LOC_Os12g42590	expressed protein	gene	expressed protein	chr12	26418085	26420005	+	CDS,three_prime_UTR,downstream
28	LOC_Os05g40110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23502528	23508079	-	CDS,promoter
28	LOC_Os04g28880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16944958	16951623	+	CDS,downstream
28	LOC_Os12g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11798389	11805464	-	CDS,promoter
28	LOC_Os08g15800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9586346	9591484	+	CDS,downstream
28	LOC_Os12g37180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22766258	22770556	+	CDS,downstream
28	LOC_Os06g20590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11849683	11854873	-	CDS,promoter
28	LOC_Os02g15169	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	8458547	8460663	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os06g39150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23247166	23247996	+	CDS,promoter,downstream
28	LOC_Os02g20890	transposon protein, putative, Mutator sub-class, expressed	gene	transposon protein, putative, Mutator sub-class, expressed	chr2	12350040	12352794	-	CDS,downstream
28	LOC_Os08g30750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18966305	18973941	-	CDS,downstream
28	LOC_Os10g04150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1928848	1930023	-	CDS,promoter,downstream
28	LOC_Os04g05480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	2767885	2768820	-	CDS,promoter,downstream
28	LOC_Os03g49000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27902653	27908059	+	CDS,promoter,downstream
28	LOC_Os01g24140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13611404	13614002	+	CDS,promoter,downstream
28	LOC_Os01g37360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20856309	20859509	-	CDS,promoter,downstream
28	LOC_Os01g20740	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	11548950	11551618	-	CDS,promoter,downstream
28	LOC_Os09g12690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7264424	7266380	+	CDS,downstream
28	LOC_Os11g16700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9253493	9254024	-	CDS,promoter
28	LOC_Os08g33550	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr8	20946246	20948982	+	CDS
28	LOC_Os12g06580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	3191370	3193178	+	CDS,downstream
28	LOC_Os04g13740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7659237	7662655	+	CDS,promoter,downstream
28	LOC_Os07g12690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7246842	7251633	-	CDS,promoter
28	LOC_Os05g02430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	809990	810635	-	CDS,promoter,downstream
28	LOC_Os04g05104	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2519488	2530894	-	CDS
28	LOC_Os08g27000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16491030	16497766	-	CDS
28	LOC_Os10g14280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7752330	7753622	-	CDS
28	LOC_Os07g28810	expressed protein	gene	expressed protein	chr7	16868081	16869360	-	three_prime_UTR,promoter
28	LOC_Os10g03060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	1273581	1275196	+	CDS,promoter,downstream
28	LOC_Os06g14590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8210536	8216646	+	CDS,downstream
28	LOC_Os12g12180	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6679990	6686756	+	CDS
28	LOC_Os05g13610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7544012	7547728	+	CDS,downstream
28	LOC_Os11g41750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24601513	24604454	+	CDS,promoter,downstream
28	LOC_Os12g28230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16668782	16669392	+	CDS,downstream
28	LOC_Os01g33142	hypothetical protein	gene	hypothetical protein	chr1	18245666	18249063	-	CDS,promoter,downstream
28	LOC_Os03g40500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	22512141	22514480	-	CDS,downstream
28	LOC_Os06g30100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17354993	17356268	+	CDS
28	LOC_Os07g29480	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr7	17305817	17308592	-	CDS,three_prime_UTR,promoter
28	LOC_Os05g15540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8790151	8795368	-	CDS,downstream
28	LOC_Os11g19710	hypothetical protein	gene	hypothetical protein	chr11	11345368	11349490	-	CDS
28	LOC_Os04g13860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7723127	7726427	+	CDS,promoter,downstream
28	LOC_Os08g36620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	23099241	23105199	+	CDS,downstream
28	LOC_Os08g35720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22534898	22538600	+	CDS
28	LOC_Os06g38890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23072514	23078699	-	CDS
28	LOC_Os11g26650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14799691	14804195	+	CDS,promoter,downstream
28	LOC_Os10g14850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7789747	7790977	-	CDS,promoter,downstream
28	LOC_Os07g16430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9623339	9626296	-	CDS,promoter,downstream
28	LOC_Os01g35740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19794086	19800181	-	CDS,promoter,downstream
28	LOC_Os08g20907	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12526085	12529584	-	CDS,promoter,downstream
28	LOC_Os08g44690	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr8	28082583	28083494	+	CDS,downstream
28	LOC_Os09g19430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11624499	11629753	-	CDS,promoter
28	LOC_Os08g36160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	22780744	22786252	+	CDS,promoter
28	LOC_Os01g44150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25303097	25308836	+	CDS,promoter,downstream
28	LOC_Os02g30580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18193147	18199508	-	CDS,promoter,downstream
28	LOC_Os11g10190	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr11	5517578	5520591	-	CDS,downstream
28	LOC_Os05g37320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	21769011	21772074	-	CDS
28	LOC_Os12g18030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10364006	10366931	+	CDS,downstream
28	LOC_Os12g06010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	2767413	2776018	+	five_prime_UTR,CDS
28	LOC_Os08g19710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11801154	11804314	+	CDS,promoter,downstream
28	LOC_Os08g32190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19959813	19962549	+	CDS,promoter,downstream
28	LOC_Os07g29180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17081490	17086602	+	CDS,promoter
28	LOC_Os08g29430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18040231	18043631	-	CDS,promoter,downstream
28	LOC_Os10g29970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	15481333	15485273	-	CDS,promoter
28	LOC_Os02g01470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	271926	273503	-	CDS
28	LOC_Os10g04140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1919459	1926911	-	CDS,downstream
28	LOC_Os10g04810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	2318441	2321496	-	CDS,promoter,downstream
28	LOC_Os05g25130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	14504178	14506256	-	CDS,promoter,downstream
28	LOC_Os04g14070	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7845060	7845616	+	CDS,promoter
28	LOC_Os07g20360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11744559	11750382	-	CDS,downstream
28	LOC_Os09g37900	hypothetical protein	gene	hypothetical protein	chr9	21850940	21852804	-	CDS,downstream
28	LOC_Os09g04140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2146298	2147557	+	CDS,promoter,downstream
28	LOC_Os12g34700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	21031300	21035208	+	CDS,downstream
28	LOC_Os08g17544	unknown	gene	unknown	chr8	10734722	10735737	-	CDS,promoter,downstream
28	LOC_Os12g06040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	2793026	2800777	-	CDS
28	LOC_Os02g25190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14650212	14651359	-	CDS,promoter,downstream
28	LOC_Os04g07789	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4157750	4159398	-	CDS,promoter,downstream
28	LOC_Os09g06800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3249591	3253338	+	CDS,downstream
28	LOC_Os09g23899	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14255378	14256188	-	three_prime_UTR,promoter,downstream
28	LOC_Os05g51990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29798651	29799292	-	CDS,promoter,downstream
28	LOC_Os05g31410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18203593	18205123	-	CDS
28	LOC_Os04g14330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8022452	8023434	+	CDS,promoter,downstream
28	LOC_Os08g15310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9306950	9309837	-	CDS,promoter,downstream
28	LOC_Os01g03610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	1473387	1476867	-	CDS,promoter
28	LOC_Os09g01150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	155867	156970	-	CDS,promoter,downstream
28	LOC_Os07g23210	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	13080478	13083603	+	three_prime_UTR,downstream
28	LOC_Os02g52970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	32399665	32404759	+	CDS,promoter,downstream
28	LOC_Os04g06010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3111223	3114555	-	CDS,promoter,downstream
28	LOC_Os04g31440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18633721	18634926	-	CDS,promoter,downstream
28	LOC_Os11g18510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10429975	10433100	+	CDS,downstream
28	LOC_Os04g50140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29717069	29719586	+	CDS,promoter,downstream
28	LOC_Os01g31540	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17251736	17252176	+	CDS,promoter,downstream
28	LOC_Os07g14500	hypothetical protein	gene	hypothetical protein	chr7	8258079	8259258	+	CDS,promoter,downstream
28	LOC_Os05g16090	hypothetical protein	gene	hypothetical protein	chr5	9094058	9094643	+	CDS,promoter,downstream
28	LOC_Os08g30300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18637563	18639511	+	CDS,promoter,downstream
28	LOC_Os06g48370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29245546	29251252	-	CDS,promoter,downstream
28	LOC_Os12g12320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6775491	6776477	+	CDS,promoter,downstream
28	LOC_Os11g22710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12604538	12607416	+	CDS,promoter,downstream
28	LOC_Os06g48710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	29467259	29469439	+	CDS,promoter,downstream
28	LOC_Os06g22230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12892845	12898070	-	CDS,promoter,downstream
28	LOC_Os07g14970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8589395	8590934	+	CDS,promoter,downstream
28	LOC_Os05g29700	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	17107997	17111894	-	CDS,promoter,downstream
28	LOC_Os03g56676	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	32276691	32280932	-	CDS,promoter
28	LOC_Os01g35220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19493699	19500866	-	CDS,promoter
28	LOC_Os04g28290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	16563988	16569261	-	CDS
28	LOC_Os12g19460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	11303871	11309716	+	CDS,promoter
28	LOC_Os09g02990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1400324	1405827	-	CDS,promoter,downstream
28	LOC_Os11g02870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	973629	974345	+	CDS,promoter,downstream
28	LOC_Os12g31110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18666410	18667294	+	CDS,promoter,downstream
28	LOC_Os07g49350	expressed protein	gene	expressed protein	chr7	29555026	29557047	-	three_prime_UTR,promoter
28	LOC_Os06g47370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	28709015	28711976	+	CDS,downstream
28	LOC_Os04g05900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3046257	3051962	+	CDS,promoter,downstream
28	LOC_Os02g44190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26741831	26744252	+	CDS,promoter
28	LOC_Os05g15840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8938510	8943003	-	CDS
28	LOC_Os05g09260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5173302	5174132	+	CDS,promoter,downstream
28	LOC_Os08g40750	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	25778471	25782777	-	CDS
28	LOC_Os05g08940	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr5	4942570	4946511	+	CDS,promoter
28	LOC_Os03g32070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18336837	18344169	+	CDS,promoter,downstream
28	LOC_Os12g17300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9898465	9901422	-	CDS,promoter,downstream
28	LOC_Os01g41690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23594006	23600174	+	CDS,promoter,downstream
28	LOC_Os02g03630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	1499923	1503468	+	CDS
28	LOC_Os04g55530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32848995	32855112	+	CDS
28	LOC_Os01g07990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	3863260	3867543	+	CDS,downstream
28	LOC_Os04g02370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	843723	853773	+	CDS
28	LOC_Os08g23330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14082904	14087841	+	CDS,downstream
28	LOC_Os02g46070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	28067088	28069433	+	CDS,downstream
28	LOC_Os09g19290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11543099	11549253	+	CDS
28	LOC_Os10g21770	hypothetical protein	gene	hypothetical protein	chr10	11099368	11100541	+	CDS,downstream
28	LOC_Os06g21170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	12232995	12235340	+	CDS,promoter
28	LOC_Os04g05710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2912078	2917218	-	CDS
28	LOC_Os01g26980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	15024812	15035230	+	CDS
28	LOC_Os03g32650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	18699120	18704944	-	CDS,downstream
28	LOC_Os09g09250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4954357	4957281	-	CDS,promoter,downstream
28	LOC_Os06g25850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15098007	15106201	+	CDS,promoter
28	LOC_Os06g22900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13370229	13374235	-	CDS,promoter
28	LOC_Os01g47000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	26835444	26841491	+	CDS
28	LOC_Os04g51490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30313984	30318300	-	CDS,promoter,downstream
28	LOC_Os01g47220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	26983862	26985211	+	CDS,promoter,downstream
28	LOC_Os12g33920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20417030	20421387	-	CDS,promoter
28	LOC_Os07g23220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13087173	13091965	+	CDS,promoter,downstream
28	LOC_Os05g13540	hypothetical protein	gene	hypothetical protein	chr5	7508540	7509930	+	CDS,promoter,downstream
28	LOC_Os08g30400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18695240	18699579	+	CDS,promoter,downstream
28	LOC_Os05g09712	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5486266	5488563	+	CDS
28	LOC_Os06g10550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	5437693	5440871	-	CDS,promoter
28	LOC_Os02g26060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	15289213	15295438	-	CDS,promoter,downstream
28	LOC_Os09g07470	hypothetical protein	gene	hypothetical protein	chr9	3741150	3741637	-	CDS,promoter,downstream
28	LOC_Os02g05260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2527892	2533665	-	CDS,downstream
28	LOC_Os03g33430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19103177	19103749	+	CDS,promoter,downstream
28	LOC_Os07g38770	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr7	23267348	23268706	-	CDS,downstream
28	LOC_Os08g11310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6647078	6654084	-	CDS,promoter,downstream
28	LOC_Os11g22470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12456011	12457397	-	CDS,promoter,downstream
28	LOC_Os10g30130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15579005	15585194	+	CDS,downstream
28	LOC_Os11g25480	hypothetical protein	gene	hypothetical protein	chr11	14055696	14056101	+	CDS,downstream
28	LOC_Os04g01008	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3951	7636	-	CDS,promoter
28	LOC_Os10g19130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9665595	9671705	-	CDS,promoter
28	LOC_Os07g17380	hypothetical protein	gene	hypothetical protein	chr7	10259630	10260148	-	CDS,promoter
28	LOC_Os01g32060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17547537	17548886	+	CDS,promoter,downstream
28	LOC_Os02g26690	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	15664361	15669683	+	CDS,promoter
28	LOC_Os03g33370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19077786	19079368	+	CDS,promoter,downstream
28	LOC_Os01g23490	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13187889	13189387	+	CDS,promoter,downstream
28	LOC_Os08g11780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6899158	6905831	-	CDS,promoter
28	LOC_Os10g09720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	5274210	5276459	+	CDS
28	LOC_Os12g20060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11660345	11666316	+	CDS,promoter,downstream
28	LOC_Os04g45360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26636246	26639166	+	CDS
28	LOC_Os01g31350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17145744	17149950	+	CDS,promoter
28	LOC_Os06g34210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19925941	19926312	-	CDS,promoter,downstream
28	LOC_Os10g11210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6234044	6237376	+	CDS,promoter,downstream
28	LOC_Os04g15960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8660844	8661970	-	CDS,promoter,downstream
28	LOC_Os03g03120	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	1310786	1314125	-	CDS,promoter,downstream
28	LOC_Os09g07200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	3524023	3525519	-	CDS,promoter,downstream
28	LOC_Os11g09900	expressed protein	gene	expressed protein	chr11	5291710	5295225	-	five_prime_UTR,CDS,downstream
28	LOC_Os05g13730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7603324	7609099	+	CDS,promoter,downstream
28	LOC_Os03g31542	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17970626	17974242	+	CDS,promoter
28	LOC_Os12g20130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11705903	11708097	-	CDS,promoter,downstream
28	LOC_Os08g03220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1492667	1498789	-	CDS,promoter
28	LOC_Os08g21200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12654665	12658172	+	CDS,downstream
28	LOC_Os05g10460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5692772	5694446	-	CDS,promoter,downstream
28	LOC_Os06g24380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14271955	14275345	+	CDS,promoter,downstream
28	LOC_Os07g16510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	9675131	9677047	-	CDS,promoter,downstream
28	LOC_Os07g16530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9689589	9693765	+	CDS,promoter,downstream
28	LOC_Os11g26180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14523343	14527672	-	CDS,promoter
28	LOC_Os12g25010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14353797	14354111	+	CDS,promoter,downstream
28	LOC_Os11g28410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15884318	15894766	+	CDS,promoter
28	LOC_Os11g22150	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	12240214	12243096	-	CDS,three_prime_UTR,promoter
28	LOC_Os07g25910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14875559	14876966	-	CDS,promoter,downstream
28	LOC_Os07g44240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	26438264	26442486	+	CDS,downstream
28	LOC_Os05g19620	expressed protein	gene	expressed protein	chr5	11431328	11435356	+	CDS,promoter
28	LOC_Os07g18370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10883532	10886713	-	CDS,promoter,downstream
28	LOC_Os05g40140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23512479	23514055	+	CDS,downstream
28	LOC_Os11g19450	hypothetical protein	gene	hypothetical protein	chr11	11186900	11191344	-	CDS,downstream
28	LOC_Os07g27200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15801435	15811057	+	CDS,promoter,downstream
28	LOC_Os09g11740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	6555858	6561509	-	CDS
28	LOC_Os12g25734	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14920973	14924804	-	CDS,promoter,downstream
28	LOC_Os09g12100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6834261	6837068	-	CDS,downstream
28	LOC_Os05g12060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6894549	6900206	-	CDS,promoter,downstream
28	LOC_Os06g16930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	9812601	9813413	+	CDS,promoter,downstream
28	LOC_Os09g06260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2938928	2940727	-	CDS,promoter,downstream
28	LOC_Os09g04000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2050816	2053910	-	CDS,promoter,downstream
28	LOC_Os04g16560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8999203	9002025	+	CDS,promoter,downstream
28	LOC_Os07g15710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9126636	9130801	+	CDS,promoter,downstream
28	LOC_Os04g03610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1572754	1574525	-	CDS,downstream
28	LOC_Os02g31970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18891680	18896222	+	CDS
28	LOC_Os04g20390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11394187	11397434	-	CDS,promoter
28	LOC_Os09g08310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	4292946	4296916	+	CDS
28	LOC_Os08g17210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10541894	10544979	-	CDS,promoter,downstream
28	LOC_Os11g23040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12784730	12789576	-	CDS,promoter,downstream
28	LOC_Os10g26080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13437374	13440027	-	CDS,promoter
28	LOC_Os01g34374	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18947776	18955572	-	CDS,promoter
28	LOC_Os04g40260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23758997	23762617	+	CDS,promoter,downstream
28	LOC_Os02g28260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16708471	16709810	-	CDS
28	LOC_Os05g17030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9715364	9717010	+	CDS,promoter,downstream
28	LOC_Os05g50740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	29021322	29028875	+	CDS,promoter
28	LOC_Os11g26259	unknown	gene	unknown	chr11	14567289	14567836	-	CDS,promoter,downstream
28	LOC_Os11g19550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11259376	11263017	-	CDS,downstream
28	LOC_Os07g18430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10905399	10906334	+	CDS,promoter,downstream
28	LOC_Os08g41140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	25988566	25993050	+	CDS,promoter,downstream
28	LOC_Os08g11120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6540621	6544729	-	CDS,promoter,downstream
28	LOC_Os06g29660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17010286	17011694	+	CDS,promoter,downstream
28	LOC_Os03g33328	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19058481	19064222	+	CDS,promoter,downstream
28	LOC_Os04g07040	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3719846	3720676	+	CDS,downstream
28	LOC_Os11g24250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13350155	13352122	+	CDS,promoter,downstream
28	LOC_Os05g27230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15773171	15780208	+	CDS
28	LOC_Os10g17070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8478849	8482084	-	CDS,promoter,downstream
28	LOC_Os12g28980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17132879	17137461	-	CDS,promoter,downstream
28	LOC_Os01g36370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20168464	20176069	+	CDS,downstream
28	LOC_Os03g12580	hypothetical protein	gene	hypothetical protein	chr3	6673238	6674471	+	CDS,promoter
28	LOC_Os03g34220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19487011	19489481	-	CDS,promoter
28	LOC_Os02g07510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3886548	3888154	+	CDS,promoter,downstream
28	LOC_Os01g33810	disease resistance protein RPM1, putative, expressed	gene	disease resistance protein RPM1, putative, expressed	chr1	18612698	18615514	+	CDS
28	LOC_Os06g24090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14094694	14100013	-	CDS,promoter,downstream
28	LOC_Os11g20610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11940962	11945526	-	CDS,promoter,downstream
28	LOC_Os03g20200	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	11416897	11419545	-	CDS,promoter
28	LOC_Os09g18130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11106191	11107814	-	CDS,promoter
28	LOC_Os12g16630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9516760	9520084	+	CDS
28	LOC_Os04g13780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7674723	7679062	-	CDS,promoter,downstream
28	LOC_Os07g28690	hypothetical protein	gene	hypothetical protein	chr7	16797747	16798327	-	CDS,promoter
28	LOC_Os02g55620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	34058572	34061363	-	CDS,downstream
28	LOC_Os11g29320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16535535	16538634	-	CDS,promoter,downstream
28	LOC_Os08g42230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	26666124	26669411	+	CDS,promoter,downstream
28	LOC_Os10g29490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15241842	15248773	-	CDS,promoter
28	LOC_Os01g21490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11998356	12001898	-	CDS,promoter,downstream
28	LOC_Os04g45390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26659107	26663640	-	CDS,downstream
28	LOC_Os06g30340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17522117	17523148	-	CDS,promoter,downstream
28	LOC_Os06g25230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14757756	14760582	-	CDS,promoter,downstream
28	LOC_Os11g22420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12405825	12409128	+	CDS,promoter,downstream
28	LOC_Os04g55879	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33086938	33093707	-	CDS,downstream
28	LOC_Os07g38330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	23027165	23028961	-	CDS,promoter,downstream
28	LOC_Os10g14930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7843687	7845821	+	CDS,promoter,downstream
28	LOC_Os09g20080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	12025537	12027725	-	CDS,promoter
28	LOC_Os12g20450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11937717	11941391	-	CDS
28	LOC_Os01g15180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8508378	8514138	+	CDS,promoter,downstream
28	LOC_Os02g52680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	32209795	32215415	-	CDS,downstream
28	LOC_Os05g24170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13892771	13900067	-	CDS,promoter
28	LOC_Os05g20220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11837912	11839208	-	CDS,promoter,downstream
28	LOC_Os11g17150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9516386	9520151	+	CDS,downstream
28	LOC_Os07g27170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15758568	15764818	-	CDS,promoter
28	LOC_Os06g35440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20650015	20653835	-	CDS,downstream
28	LOC_Os10g09380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5077026	5079648	+	CDS,downstream
28	LOC_Os04g13810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7698116	7701645	+	CDS,promoter,downstream
28	LOC_Os10g36800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	19628910	19631090	+	CDS,promoter
28	LOC_Os09g22110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13389297	13394136	-	CDS,promoter,downstream
28	LOC_Os05g14110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7882355	7888746	+	CDS,downstream
28	LOC_Os02g26500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15556364	15560053	-	CDS,promoter,downstream
28	LOC_Os04g07550	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4014581	4015962	-	CDS,promoter,downstream
28	LOC_Os01g23260	hypothetical protein	gene	hypothetical protein	chr1	13072592	13073346	-	CDS,promoter,downstream
28	LOC_Os12g23320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	13198155	13202234	-	CDS
28	LOC_Os11g46190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27499916	27503221	-	CDS,promoter
28	LOC_Os01g34520	hypothetical protein	gene	hypothetical protein	chr1	19031329	19031881	+	CDS,promoter,downstream
28	LOC_Os01g33380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18377506	18378471	+	CDS,promoter,downstream
28	LOC_Os01g35770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19811320	19817836	+	CDS,promoter
28	LOC_Os02g13050	hypothetical protein	gene	hypothetical protein	chr2	6909190	6909835	-	CDS,promoter
28	LOC_Os04g11620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6352355	6358836	-	CDS
28	LOC_Os10g42910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	23060763	23070172	+	CDS,promoter
28	LOC_Os06g02290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	755270	755926	-	CDS,downstream
28	LOC_Os01g29380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16463490	16465241	-	CDS,promoter
28	LOC_Os10g37170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19812757	19816776	+	CDS
28	LOC_Os10g06160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3140299	3141118	-	CDS,downstream
28	LOC_Os11g28720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16146936	16149894	+	CDS,promoter,downstream
28	LOC_Os12g19810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11549274	11556321	-	CDS,promoter,downstream
28	LOC_Os05g40760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23828059	23833943	+	CDS,downstream
28	LOC_Os01g42934	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	24423168	24425286	-	CDS,promoter
28	LOC_Os04g02720	potassium channel KAT2, putative	gene	potassium channel KAT2, putative	chr4	1038239	1040495	+	CDS,downstream
28	LOC_Os06g03165	hypothetical protein	gene	hypothetical protein	chr6	1186903	1190012	-	CDS,promoter
28	LOC_Os06g42420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25492397	25496511	-	CDS,promoter
28	LOC_Os06g21160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12222083	12225387	-	CDS,promoter,downstream
28	LOC_Os05g24290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13992874	13998450	+	CDS,promoter
28	LOC_Os03g39330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21847853	21852292	-	CDS,downstream
28	LOC_Os08g17900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10982711	10983562	+	CDS,promoter,downstream
28	LOC_Os06g24330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14228142	14231602	+	CDS,promoter,downstream
28	LOC_Os04g59170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	35011303	35014228	+	CDS,promoter,downstream
28	LOC_Os05g22700	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12824397	12825805	-	CDS,promoter,downstream
28	LOC_Os08g32270	hypothetical protein	gene	hypothetical protein	chr8	19992356	19992861	-	CDS,promoter,downstream
28	LOC_Os09g02080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	762310	765096	-	CDS,promoter,downstream
28	LOC_Os12g22070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12416092	12416837	+	CDS,promoter,downstream
28	LOC_Os08g28100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17140511	17145595	-	CDS,promoter
28	LOC_Os06g01090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	96225	100496	-	CDS,downstream
28	LOC_Os12g25890	hypothetical protein	gene	hypothetical protein	chr12	15016228	15017587	-	CDS,downstream
28	LOC_Os08g16230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9890364	9893562	+	CDS,promoter,downstream
28	LOC_Os01g25090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14162269	14164258	-	CDS,promoter
28	LOC_Os12g10440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5529193	5535753	-	CDS,promoter,downstream
28	LOC_Os11g41420	hypothetical protein	gene	hypothetical protein	chr11	24387739	24390110	+	CDS,downstream
28	LOC_Os03g39490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21932224	21933245	+	CDS,promoter,downstream
28	LOC_Os05g20270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11874716	11877914	-	CDS,downstream
28	LOC_Os10g24730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12647238	12651776	+	CDS,promoter,downstream
28	LOC_Os01g31340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17141457	17143810	-	CDS,promoter,downstream
28	LOC_Os12g33710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20319356	20320162	-	CDS,promoter,downstream
28	LOC_Os02g40930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	24795483	24798440	+	CDS,promoter,downstream
28	LOC_Os09g23830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	14203203	14205387	+	CDS,downstream
28	LOC_Os11g35756	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20523074	20526167	+	CDS,downstream
28	LOC_Os02g26880	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	15778673	15780610	+	CDS,promoter,downstream
28	LOC_Os05g16520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9372994	9374439	-	CDS,promoter
28	LOC_Os04g05730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2926084	2930167	-	CDS,promoter,downstream
28	LOC_Os04g19820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11055264	11059409	+	CDS,downstream
28	LOC_Os10g32560	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	16984903	16990839	+	CDS,downstream
28	LOC_Os11g09919	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5300929	5312202	-	CDS,promoter,downstream
28	LOC_Os01g29730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16656410	16657488	-	CDS,promoter,downstream
28	LOC_Os01g33609	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18495711	18499369	+	CDS,promoter
28	LOC_Os05g09340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5217630	5221316	+	CDS,promoter
28	LOC_Os10g30240	expressed protein	gene	expressed protein	chr10	15632562	15635991	-	CDS,three_prime_UTR,promoter
28	LOC_Os08g23000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	13853619	13855982	-	CDS,promoter,downstream
28	LOC_Os05g37540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	21912878	21916830	+	CDS,downstream
28	LOC_Os05g26160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15163025	15166674	+	CDS,promoter,downstream
28	LOC_Os01g11920	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	6470718	6484507	+	CDS
28	LOC_Os12g32800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	19785197	19796040	+	CDS,downstream
28	LOC_Os05g44786	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25972498	25978585	-	CDS,downstream
28	LOC_Os12g26570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15544576	15547223	-	CDS,promoter,downstream
28	LOC_Os11g10490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5724573	5728385	-	CDS
28	LOC_Os07g34160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20433110	20436441	-	CDS
28	LOC_Os12g18750	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	10838903	10840765	-	CDS,promoter,downstream
28	LOC_Os04g21280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11992756	11996423	-	CDS
28	LOC_Os05g27270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15794881	15797087	+	CDS,downstream
28	LOC_Os05g04980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2409698	2415808	-	CDS,promoter
28	LOC_Os08g13970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	8374651	8382497	-	CDS,promoter
28	LOC_Os01g21000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11723321	11724422	-	CDS,downstream
28	LOC_Os08g23890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14456587	14459507	-	CDS,promoter,downstream
28	LOC_Os01g14450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8092599	8096261	-	CDS,downstream
28	LOC_Os12g13580	hypothetical protein	gene	hypothetical protein	chr12	7619064	7622173	+	CDS,downstream
28	LOC_Os07g12980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7444044	7449426	-	CDS,promoter,downstream
28	LOC_Os12g33560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20240901	20243492	-	CDS,promoter,downstream
28	LOC_Os12g17460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10001210	10002253	+	CDS
28	LOC_Os02g26190	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	15368435	15384093	+	CDS,promoter
28	LOC_Os05g24430	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	14049976	14055227	-	CDS,promoter,downstream
28	LOC_Os09g16490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10097567	10098970	+	CDS,promoter,downstream
28	LOC_Os04g04500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2143410	2145460	-	CDS,promoter,downstream
28	LOC_Os03g35740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19797347	19802053	-	CDS,promoter,downstream
28	LOC_Os01g72390	NBS type disease resistance protein, putative	gene	NBS type disease resistance protein, putative	chr1	41985035	41987813	-	CDS,promoter,downstream
28	LOC_Os08g44990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	28230666	28235605	+	CDS
28	LOC_Os12g27590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16237110	16238762	+	CDS,promoter,downstream
28	LOC_Os04g12190	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr4	6709881	6711834	+	CDS,downstream
28	LOC_Os10g09310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5048832	5052755	-	CDS,promoter
28	LOC_Os09g24290	agenet domain-containing protein, putative	gene	agenet domain-containing protein, putative	chr9	14433370	14439385	+	CDS,promoter
28	LOC_Os04g07340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3900247	3902667	+	CDS,promoter,downstream
28	LOC_Os07g16890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9926066	9929304	-	CDS,promoter
28	LOC_Os05g20590	hypothetical protein	gene	hypothetical protein	chr5	12084718	12086264	+	CDS,promoter,downstream
28	LOC_Os01g09050	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	4550112	4553640	-	CDS
28	LOC_Os07g14960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8581760	8584077	+	CDS,promoter,downstream
28	LOC_Os09g12420	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	7104780	7114076	-	CDS
28	LOC_Os10g23950	hypothetical protein	gene	hypothetical protein	chr10	12214104	12215197	-	CDS,promoter,downstream
28	LOC_Os09g08930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4747016	4750384	-	CDS,downstream
28	LOC_Os07g24370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13868562	13870568	-	CDS,promoter,downstream
28	LOC_Os04g31420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18618838	18623633	-	CDS,promoter,downstream
28	LOC_Os04g23250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13254222	13258864	+	CDS,promoter
28	LOC_Os09g37140	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	21423784	21425085	-	CDS,promoter,downstream
28	LOC_Os11g15240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8597487	8601116	+	CDS
28	LOC_Os02g18340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10657825	10663069	+	CDS,promoter,downstream
28	LOC_Os07g26910	hypothetical protein	gene	hypothetical protein	chr7	15587663	15589934	-	CDS,promoter,downstream
28	LOC_Os01g23470	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13182040	13184481	+	CDS,promoter,downstream
28	LOC_Os06g33830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19683598	19684278	+	CDS,promoter,downstream
28	LOC_Os11g38300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	22206547	22212632	-	CDS,downstream
28	LOC_Os04g17270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9460789	9464025	-	CDS,promoter
28	LOC_Os05g27470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15915929	15920071	-	CDS,promoter
28	LOC_Os02g22080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	13133206	13137031	-	CDS
28	LOC_Os02g27270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16051474	16052519	+	CDS,promoter,downstream
28	LOC_Os10g37370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19942744	19945119	+	CDS,downstream
28	LOC_Os05g16730	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr5	9513340	9516486	+	CDS,promoter
28	LOC_Os08g28439	unknown	gene	unknown	chr8	17353069	17353370	-	CDS,promoter,downstream
28	LOC_Os05g17550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10083946	10085825	+	CDS,promoter,downstream
28	LOC_Os08g23860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14438547	14441748	+	CDS,promoter,downstream
28	LOC_Os11g03040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	1061636	1064152	-	CDS,promoter,downstream
28	LOC_Os11g22850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12676523	12685033	+	CDS,promoter,downstream
28	LOC_Os01g22140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12437999	12441559	-	CDS,promoter,downstream
28	LOC_Os06g36420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	21384989	21388027	-	CDS,downstream
28	LOC_Os12g22680	histone H3, putative, expressed	gene	histone H3, putative, expressed	chr12	12805142	12805858	-	three_prime_UTR,promoter,downstream
28	LOC_Os11g23140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12850763	12857443	+	CDS,promoter,downstream
28	LOC_Os09g35650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	20506068	20507554	-	CDS,promoter,downstream
28	LOC_Os10g40400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	21573342	21577861	-	CDS
28	LOC_Os04g56890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	33723462	33726055	-	CDS,promoter,downstream
28	LOC_Os06g42380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25470433	25475083	+	CDS,promoter
28	LOC_Os06g32130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18702001	18703834	-	CDS
28	LOC_Os02g12630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	6591946	6594769	+	CDS,downstream
28	LOC_Os01g68990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	40076945	40081367	-	CDS,promoter
28	LOC_Os09g12700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7266567	7269153	+	CDS,promoter,downstream
28	LOC_Os06g17070	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	9891374	9894169	-	CDS,promoter,downstream
28	LOC_Os06g25710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15014290	15017638	-	CDS,promoter,downstream
28	LOC_Os09g11910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6693217	6697761	-	CDS
28	LOC_Os03g45550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25697662	25702913	+	CDS,promoter,downstream
28	LOC_Os09g04380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2317835	2319685	-	CDS,promoter
28	LOC_Os11g15640	hypothetical protein	gene	hypothetical protein	chr11	8866433	8868548	-	CDS,promoter,downstream
28	LOC_Os04g28890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16951840	16952602	+	CDS,promoter,downstream
28	LOC_Os09g12090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	6826191	6830166	-	CDS
28	LOC_Os09g07280	hypothetical protein	gene	hypothetical protein	chr9	3576888	3579495	+	CDS
28	LOC_Os02g24990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14480500	14482427	+	CDS,promoter,downstream
28	LOC_Os04g16924	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9251095	9254354	+	CDS,promoter,downstream
28	LOC_Os04g18780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10432556	10435503	+	CDS
28	LOC_Os06g03474	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1326586	1332121	-	CDS,promoter,downstream
28	LOC_Os06g27380	hypothetical protein	gene	hypothetical protein	chr6	15502222	15502875	+	CDS,promoter
28	LOC_Os10g12174	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6798163	6807921	-	CDS
28	LOC_Os03g13890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	7530457	7532772	-	CDS,promoter
28	LOC_Os02g01260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	139660	143882	-	CDS,promoter
28	LOC_Os08g05400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2844861	2846836	-	CDS,promoter
28	LOC_Os07g05140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	2268690	2273157	-	CDS
28	LOC_Os11g20740	hypothetical protein	gene	hypothetical protein	chr11	12001182	12001477	+	CDS,promoter,downstream
28	LOC_Os05g18840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10942514	10944337	-	CDS,promoter
28	LOC_Os05g22810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12888711	12893132	-	CDS,downstream
28	LOC_Os02g48930	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	29918103	29921055	-	CDS,downstream
28	LOC_Os01g33440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18411578	18414304	+	CDS
28	LOC_Os12g27490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16178905	16185098	-	CDS
28	LOC_Os10g25190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12931352	12931678	-	CDS,promoter,downstream
28	LOC_Os06g12710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	6937496	6943387	+	CDS,downstream
28	LOC_Os08g12360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7280258	7282488	-	CDS,promoter,downstream
28	LOC_Os10g24410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12444105	12444577	-	CDS,downstream
28	LOC_Os12g09900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	5246327	5251148	-	CDS,promoter,downstream
28	LOC_Os03g57610	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	32829077	32832058	+	CDS,downstream
28	LOC_Os04g01820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	524370	528158	+	CDS,downstream
28	LOC_Os01g42270	transcriptional corepressor LEUNIG, putative	gene	transcriptional corepressor LEUNIG, putative	chr1	23951756	23962411	-	CDS,promoter,downstream
28	LOC_Os08g34850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21917819	21929943	-	CDS
28	LOC_Os05g24460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14060617	14066773	+	CDS,promoter,downstream
28	LOC_Os06g32340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18821333	18826727	+	CDS
28	LOC_Os12g19620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11439933	11441720	+	CDS,promoter,downstream
28	LOC_Os03g33640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19229193	19233099	+	CDS,promoter
28	LOC_Os07g16770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9836396	9844665	+	CDS
28	LOC_Os10g17580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8808273	8810046	-	CDS
28	LOC_Os04g07620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4050573	4050881	+	CDS,promoter,downstream
28	LOC_Os12g27120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15905639	15915418	+	CDS,downstream
28	LOC_Os02g53020	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	32442024	32445412	+	CDS,downstream
28	LOC_Os08g10840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6381672	6382539	+	CDS,promoter,downstream
28	LOC_Os11g12840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7277979	7279991	+	CDS
28	LOC_Os01g44200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25335532	25345375	+	CDS
28	LOC_Os07g16570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9716449	9719634	-	CDS,promoter,downstream
28	LOC_Os08g07580	hypothetical protein	gene	hypothetical protein	chr8	4256617	4257486	-	CDS,promoter,downstream
28	LOC_Os04g24250	hypothetical protein	gene	hypothetical protein	chr4	13886053	13886322	+	CDS,promoter
28	LOC_Os08g08600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4975176	4978177	+	CDS
28	LOC_Os04g11930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6542702	6545987	+	CDS,promoter
28	LOC_Os11g13730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7550317	7555169	-	CDS,downstream
28	LOC_Os05g15090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8565780	8570011	+	CDS,promoter
28	LOC_Os05g14320	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	8053459	8056880	-	CDS,downstream
28	LOC_Os02g05150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2461093	2464634	+	CDS,downstream
28	LOC_Os11g37430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21640918	21642071	+	CDS,promoter,downstream
28	LOC_Os01g34840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	19235324	19238943	-	CDS,promoter
28	LOC_Os07g24660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14025774	14028395	+	CDS,promoter,downstream
28	LOC_Os12g10300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5441629	5441876	-	CDS,promoter,downstream
28	LOC_Os01g28020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15665232	15668032	-	CDS,promoter,downstream
28	LOC_Os09g26440	expressed protein	gene	expressed protein	chr9	15979183	15980138	-	CDS,three_prime_UTR,promoter
28	LOC_Os05g18510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10706144	10707263	+	CDS,promoter
28	LOC_Os04g23380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13357289	13360986	+	CDS,promoter
28	LOC_Os03g32810	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	18774418	18774906	+	CDS,promoter,downstream
28	LOC_Os11g40920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24024090	24033599	-	CDS
28	LOC_Os11g20780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12017929	12026290	+	CDS,promoter,downstream
28	LOC_Os03g24630	hypothetical protein	gene	hypothetical protein	chr3	14025537	14027939	-	CDS
28	LOC_Os03g45050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25422574	25429103	-	CDS,promoter,downstream
28	LOC_Os04g20120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11199406	11203745	-	CDS,promoter,downstream
28	LOC_Os11g45620	rust-resistance protein Lr21, putative	gene	rust-resistance protein Lr21, putative	chr11	27131728	27137530	-	CDS,promoter
28	LOC_Os07g03427	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	1370130	1372955	+	CDS
28	LOC_Os11g02950	auxin efflux carrier component, putative	gene	auxin efflux carrier component, putative	chr11	1018944	1024495	+	CDS
28	LOC_Os11g31220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	17729998	17736924	+	CDS,promoter
28	LOC_Os08g36880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	23299174	23300754	+	CDS,promoter,downstream
28	LOC_Os08g11060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6507239	6508003	+	CDS,promoter,downstream
28	LOC_Os06g12480	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	6777672	6780081	-	CDS,promoter
28	LOC_Os12g26110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15189209	15192226	+	CDS,downstream
28	LOC_Os02g31190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18672422	18678375	-	CDS,downstream
28	LOC_Os09g06410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3018985	3021423	+	CDS,promoter,downstream
28	LOC_Os12g25930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15045319	15050656	-	CDS,downstream
28	LOC_Os02g34160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	20420699	20428258	+	CDS,promoter,downstream
28	LOC_Os10g03000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1246895	1248379	-	CDS,promoter,downstream
28	LOC_Os09g40050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22988137	22995074	+	CDS
28	LOC_Os05g24070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13816878	13819187	-	CDS,promoter
28	LOC_Os07g40350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	24195366	24198940	+	CDS,downstream
28	LOC_Os02g13750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7402713	7410877	+	CDS,promoter
28	LOC_Os12g18250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	10532111	10536472	+	CDS,downstream
28	LOC_Os07g41520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24882823	24889190	+	CDS,downstream
28	LOC_Os10g17110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8509472	8510374	-	CDS,promoter,downstream
28	LOC_Os11g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12554662	12557081	+	CDS,promoter,downstream
28	LOC_Os07g05540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	2582100	2590218	-	CDS,promoter,downstream
28	LOC_Os12g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12731151	12732272	+	CDS,promoter,downstream
28	LOC_Os07g30030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17697399	17699805	+	CDS,promoter,downstream
28	LOC_Os04g03630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1592690	1599112	-	CDS,downstream
28	LOC_Os11g03484	MATE efflux family protein, putative, expressed	gene	MATE efflux family protein, putative, expressed	chr11	1334134	1343997	-	CDS,promoter
28	LOC_Os10g24450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12467556	12474189	-	CDS,promoter
28	LOC_Os01g22100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12407298	12409708	+	CDS,downstream
28	LOC_Os07g19250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	11398580	11400480	-	CDS
28	LOC_Os06g28920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16490519	16493785	+	CDS,promoter
28	LOC_Os12g09920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5257598	5257849	-	CDS,promoter
28	LOC_Os01g33130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18236367	18237394	+	CDS,promoter
28	LOC_Os06g36980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21790345	21791787	-	CDS,promoter,downstream
28	LOC_Os01g28060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15703094	15709604	+	CDS,promoter
28	LOC_Os05g48100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	27509173	27511658	+	CDS,promoter
28	LOC_Os12g41280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	25565849	25569757	-	CDS,promoter
28	LOC_Os01g20760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	11561504	11567853	+	CDS,downstream
28	LOC_Os04g16370	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	8891195	8897290	+	CDS,promoter,downstream
28	LOC_Os04g22400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	12676196	12682211	+	CDS,downstream
28	LOC_Os02g38640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23348757	23350688	-	CDS,promoter,downstream
28	LOC_Os05g42930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	24867140	24870445	+	CDS,downstream
28	LOC_Os11g13640	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	7460514	7466627	-	CDS
28	LOC_Os04g30630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	18120473	18125144	-	CDS,promoter
28	LOC_Os05g20520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12045042	12046973	-	CDS,promoter,downstream
28	LOC_Os09g03430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1694022	1695479	-	CDS,downstream
28	LOC_Os05g24530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14095213	14096925	-	CDS,promoter
28	LOC_Os04g59290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	35069259	35075411	-	CDS
28	LOC_Os09g11330	hypothetical protein	gene	hypothetical protein	chr9	6293425	6294952	+	CDS,downstream
28	LOC_Os08g21380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12752064	12758023	-	CDS,downstream
28	LOC_Os12g27310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16039357	16045578	-	CDS,downstream
28	LOC_Os04g04170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1935705	1937483	-	CDS,promoter,downstream
28	LOC_Os05g25570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14800662	14805794	+	CDS,downstream
28	LOC_Os11g38420	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	22288921	22291101	+	CDS,downstream
28	LOC_Os08g28920	hypothetical protein	gene	hypothetical protein	chr8	17680423	17682574	-	CDS,downstream
28	LOC_Os06g26060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15247935	15249594	+	CDS
28	LOC_Os11g42830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25328735	25330978	-	CDS,promoter
28	LOC_Os10g03070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1277828	1289314	-	CDS,promoter,downstream
28	LOC_Os10g10810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5995858	6001968	+	CDS,downstream
28	LOC_Os07g46250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27597419	27600360	+	CDS,promoter,downstream
28	LOC_Os02g58050	hypothetical protein	gene	hypothetical protein	chr2	35534428	35537623	+	CDS,promoter
28	LOC_Os05g02280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	729696	732180	+	CDS,promoter,downstream
28	LOC_Os10g24190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12318018	12323584	+	CDS,downstream
28	LOC_Os04g24080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13741256	13744195	-	CDS,promoter,downstream
28	LOC_Os06g51540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	31227111	31230939	+	CDS,promoter,downstream
28	LOC_Os06g15430	expressed protein	gene	expressed protein	chr6	8766236	8767350	-	CDS
28	LOC_Os03g35860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19883431	19886023	+	CDS,promoter,downstream
28	LOC_Os07g39380	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	23589463	23593815	+	CDS
28	LOC_Os10g11954	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6639654	6647803	+	CDS,promoter
28	LOC_Os12g16960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9710536	9713810	-	CDS,promoter,downstream
28	LOC_Os02g35120	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	21074219	21075013	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os06g30070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17323715	17330650	+	CDS,promoter,downstream
28	LOC_Os10g23270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12075578	12077084	-	CDS,promoter
28	LOC_Os03g57480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	32759830	32765920	-	CDS,downstream
28	LOC_Os11g22910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12706410	12708818	+	CDS,downstream
28	LOC_Os01g28390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15905226	15914115	-	CDS,promoter
28	LOC_Os12g14400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8208681	8211844	+	CDS,promoter,downstream
28	LOC_Os09g29180	hypothetical protein	gene	hypothetical protein	chr9	17739943	17741068	+	CDS
28	LOC_Os12g30390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18209584	18212385	+	CDS,promoter,downstream
28	LOC_Os03g16310	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr3	9002562	9005174	-	CDS,promoter
28	LOC_Os08g42090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	26578544	26582766	+	CDS,promoter,downstream
28	LOC_Os11g23736	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr11	12948191	12951685	-	CDS,promoter,downstream
28	LOC_Os12g26120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15195052	15198738	+	CDS,promoter
28	LOC_Os10g04040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1846975	1851190	-	CDS,downstream
28	LOC_Os06g32900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19146691	19154394	+	CDS,promoter
28	LOC_Os11g29950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16939311	16941281	-	CDS,downstream
28	LOC_Os03g33620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19217164	19218821	-	CDS,promoter,downstream
28	LOC_Os06g38400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	22745470	22751074	-	CDS,promoter,downstream
28	LOC_Os03g29880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	17023601	17028581	-	CDS,downstream
28	LOC_Os11g30440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17236460	17239498	-	CDS,downstream
28	LOC_Os12g29130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17238715	17245083	-	CDS,promoter,downstream
28	LOC_Os06g36290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	21263094	21264874	+	CDS,promoter,downstream
28	LOC_Os02g42750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	25703665	25709364	-	CDS,promoter,downstream
28	LOC_Os07g28360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16550330	16554568	-	CDS,promoter
28	LOC_Os06g25950	expressed protein	gene	expressed protein	chr6	15188170	15196539	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g24450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14010257	14015076	+	CDS
28	LOC_Os11g33938	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	19356743	19360856	-	CDS,promoter
28	LOC_Os01g16160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9125484	9130832	-	CDS,promoter,downstream
28	LOC_Os07g20440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11803701	11807328	-	CDS,promoter,downstream
28	LOC_Os10g21820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11140442	11141971	+	CDS,promoter,downstream
28	LOC_Os07g31800	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr7	18894761	18903542	-	CDS,three_prime_UTR
28	LOC_Os04g13080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7209171	7213571	-	CDS,promoter,downstream
28	LOC_Os11g18382	hypothetical protein	gene	hypothetical protein	chr11	10373691	10374621	-	CDS,downstream
28	LOC_Os10g12410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6932804	6935357	+	CDS,promoter,downstream
28	LOC_Os06g28280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16064961	16066062	-	CDS,promoter,downstream
28	LOC_Os10g08740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	4754689	4758430	+	CDS,promoter,downstream
28	LOC_Os06g18800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10663616	10671486	-	CDS,promoter
28	LOC_Os10g27250	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	14298642	14303249	-	CDS,promoter,downstream
28	LOC_Os02g20220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11908864	11911908	+	CDS,downstream
28	LOC_Os12g25980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15074012	15080197	+	CDS,promoter,downstream
28	LOC_Os09g09990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5434182	5441247	+	CDS
28	LOC_Os06g08410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	4105714	4111037	-	CDS,downstream
28	LOC_Os04g23300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13288244	13291203	+	CDS,downstream
28	LOC_Os10g10490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5787484	5788897	+	CDS,promoter,downstream
28	LOC_Os04g13630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	7601448	7614561	+	CDS,promoter,downstream
28	LOC_Os04g19580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10889665	10891217	-	CDS,promoter,downstream
28	LOC_Os08g10120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	5868846	5872594	-	CDS,promoter
28	LOC_Os09g11400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6348892	6351986	+	CDS,promoter,downstream
28	LOC_Os06g29920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17230809	17233413	+	CDS,promoter,downstream
28	LOC_Os08g03120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1419756	1426325	+	CDS
28	LOC_Os07g20210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11660307	11664485	-	CDS
28	LOC_Os06g32450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18869093	18872170	+	CDS,downstream
28	LOC_Os12g25570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14793811	14796996	+	CDS,promoter,downstream
28	LOC_Os08g19750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11819217	11828084	+	CDS,promoter,downstream
28	LOC_Os12g16910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9694515	9696030	+	CDS,promoter,downstream
28	LOC_Os06g17610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10216468	10226973	+	CDS,promoter,downstream
28	LOC_Os11g28160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15723329	15725808	+	CDS,downstream
28	LOC_Os03g57380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	32719053	32722004	-	CDS,promoter,downstream
28	LOC_Os06g01140	hypothetical protein	gene	hypothetical protein	chr6	120758	123012	-	CDS,downstream
28	LOC_Os02g23840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13790991	13797623	-	CDS,promoter,downstream
28	LOC_Os01g33640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18511788	18515093	-	CDS,promoter
28	LOC_Os08g45240	RNA recognition motif containing protein, putative, expressed	gene	RNA recognition motif containing protein, putative, expressed	chr8	28397522	28406281	-	three_prime_UTR
28	LOC_Os08g11330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6661077	6662615	-	CDS,promoter
28	LOC_Os08g10820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6370657	6371150	+	CDS,promoter,downstream
28	LOC_Os05g15210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8629964	8632320	+	CDS,promoter,downstream
28	LOC_Os11g11860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6577477	6580588	-	CDS,promoter,downstream
28	LOC_Os07g36990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	22160138	22165672	+	CDS
28	LOC_Os06g24160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14137265	14144575	-	CDS
28	LOC_Os06g39920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23742165	23746361	+	CDS,promoter,downstream
28	LOC_Os08g24010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14518942	14520139	+	CDS,promoter,downstream
28	LOC_Os07g41030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24542178	24543849	+	CDS
28	LOC_Os06g45810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	27718971	27721151	+	CDS,promoter,downstream
28	LOC_Os05g15460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8734214	8735963	-	CDS,promoter,downstream
28	LOC_Os12g26550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15510227	15513593	+	CDS,promoter,downstream
28	LOC_Os08g26950	hypothetical protein	gene	hypothetical protein	chr8	16449364	16450135	+	CDS,promoter,downstream
28	LOC_Os05g24090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13841382	13842086	-	CDS,promoter,downstream
28	LOC_Os06g32640	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	18982186	18982908	+	CDS,promoter
28	LOC_Os04g24580	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	14108234	14111232	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g14050	hypothetical protein	gene	hypothetical protein	chr5	7852876	7855453	+	CDS,downstream
28	LOC_Os08g10770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6327897	6332840	+	CDS,promoter
28	LOC_Os06g20670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11908615	11910595	+	CDS,promoter
28	LOC_Os02g28350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	16750810	16754575	+	CDS,downstream
28	LOC_Os07g10850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5910830	5923367	-	CDS,downstream
28	LOC_Os07g19340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11444443	11445671	+	CDS,promoter,downstream
28	LOC_Os01g59040	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	34120185	34124281	-	CDS,promoter,downstream
28	LOC_Os11g47070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27753315	27756378	+	CDS,promoter
28	LOC_Os04g16950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9270749	9280406	+	CDS,promoter,downstream
28	LOC_Os07g31760	hypothetical protein	gene	hypothetical protein	chr7	18866712	18869400	-	CDS,promoter
28	LOC_Os03g44360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24935073	24939393	+	CDS,promoter,downstream
28	LOC_Os12g33800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20357202	20359807	+	CDS,promoter,downstream
28	LOC_Os07g10010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	5341566	5344119	+	CDS,promoter,downstream
28	LOC_Os12g22300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12586563	12589901	-	CDS,downstream
28	LOC_Os02g40350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	24430070	24432250	-	CDS,downstream
28	LOC_Os06g33290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19379596	19384807	+	CDS,promoter,downstream
28	LOC_Os05g11080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	6221876	6230703	-	CDS
28	LOC_Os10g18330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9241132	9241881	-	CDS,promoter
28	LOC_Os04g07760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4119962	4128925	+	CDS,downstream
28	LOC_Os06g15350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8713250	8716345	-	CDS,promoter
28	LOC_Os11g43430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25754005	25759058	-	CDS,downstream
28	LOC_Os03g54020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	30960416	30965029	-	CDS,downstream
28	LOC_Os12g25440	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	14705125	14707634	-	CDS,promoter
28	LOC_Os10g31189	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	16283962	16284651	+	CDS,promoter,downstream
28	LOC_Os10g08350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4540551	4543646	+	CDS,promoter,downstream
28	LOC_Os03g37680	hypothetical protein	gene	hypothetical protein	chr3	20896028	20898139	-	CDS,promoter,downstream
28	LOC_Os07g49420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29596950	29597544	-	CDS,promoter
28	LOC_Os01g02670	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr1	903341	909142	+	CDS
28	LOC_Os01g54150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	31138381	31141411	+	CDS,downstream
28	LOC_Os09g12490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7150324	7154338	-	CDS,downstream
28	LOC_Os11g14460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8110696	8118880	-	CDS,downstream
28	LOC_Os12g28960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17120106	17121054	+	CDS
28	LOC_Os10g09330	hypothetical protein	gene	hypothetical protein	chr10	5059910	5060726	+	CDS,promoter
28	LOC_Os12g35100	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr12	21311478	21315072	+	CDS,downstream
28	LOC_Os04g55450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	32794783	32801412	+	CDS
28	LOC_Os06g34090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	19844505	19848821	-	CDS,promoter
28	LOC_Os03g35480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19668318	19670613	+	CDS,promoter,downstream
28	LOC_Os01g63330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36704138	36708054	-	CDS,promoter,downstream
28	LOC_Os04g19900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11086794	11091649	+	CDS,promoter,downstream
28	LOC_Os10g01164	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	119646	122046	+	CDS,promoter,downstream
28	LOC_Os11g47452	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	28150589	28152733	-	CDS
28	LOC_Os07g25950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14889876	14891991	+	CDS,promoter,downstream
28	LOC_Os07g02750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	1002667	1004155	-	CDS,promoter
28	LOC_Os03g32910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18820344	18822341	+	CDS,promoter,downstream
28	LOC_Os01g09206	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	4641301	4642110	-	CDS,promoter,downstream
28	LOC_Os10g26040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	13412902	13419013	-	CDS,promoter
28	LOC_Os11g44050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26151632	26154556	+	CDS,downstream
28	LOC_Os07g26370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15154744	15155919	-	CDS,promoter,downstream
28	LOC_Os10g10510	hypothetical protein	gene	hypothetical protein	chr10	5811093	5812452	+	CDS,promoter
28	LOC_Os11g39980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23370995	23372279	-	CDS,promoter,downstream
28	LOC_Os09g01390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	309979	310870	+	CDS,promoter,downstream
28	LOC_Os12g25380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14638715	14643516	-	CDS,promoter,downstream
28	LOC_Os06g22580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13134270	13135331	+	CDS,promoter,downstream
28	LOC_Os08g04850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2443626	2448787	-	CDS,downstream
28	LOC_Os09g08780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4630420	4633749	+	CDS,promoter,downstream
28	LOC_Os09g05060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	2718889	2722767	-	CDS,promoter,downstream
28	LOC_Os04g04460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2116477	2118319	-	CDS,promoter,downstream
28	LOC_Os01g37540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20963555	20969710	+	CDS,promoter
28	LOC_Os09g06320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2964732	2967345	+	CDS,promoter,downstream
28	LOC_Os08g10940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6448622	6454141	-	CDS,promoter,downstream
28	LOC_Os07g27470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16003597	16006443	-	CDS
28	LOC_Os11g37180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21485491	21488532	-	CDS,promoter
28	LOC_Os07g19230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11389996	11390796	+	CDS,promoter,downstream
28	LOC_Os01g72110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	41829991	41833395	-	CDS
28	LOC_Os03g45650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25760211	25761511	-	CDS,downstream
28	LOC_Os07g26350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15141848	15146429	+	CDS,promoter,downstream
28	LOC_Os06g29150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16631497	16635968	+	CDS
28	LOC_Os11g28330	hypothetical protein	gene	hypothetical protein	chr11	15829888	15831775	+	CDS
28	LOC_Os12g04050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1700122	1705935	-	CDS,promoter
28	LOC_Os01g30980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16930759	16936372	-	CDS,promoter,downstream
28	LOC_Os09g01110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	118494	119763	-	CDS,downstream
28	LOC_Os07g39150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23455365	23456807	-	CDS,promoter,downstream
28	LOC_Os01g43970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	25195494	25201046	-	CDS,promoter,downstream
28	LOC_Os10g27140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14230516	14233865	+	CDS,downstream
28	LOC_Os08g03660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	1733578	1740850	+	CDS,promoter,downstream
28	LOC_Os08g10930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6438511	6443141	-	CDS,promoter,downstream
28	LOC_Os11g14710	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	8289420	8291906	+	CDS,promoter,downstream
28	LOC_Os02g18440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	10728808	10735256	-	CDS
28	LOC_Os01g23900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13446882	13451450	-	CDS
28	LOC_Os08g25960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15788267	15792696	-	CDS,downstream
28	LOC_Os11g25810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	14255166	14258197	-	CDS,promoter
28	LOC_Os09g16620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10193999	10195657	-	CDS,promoter,downstream
28	LOC_Os10g09280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5032788	5039452	+	CDS,promoter
28	LOC_Os05g48480	FAD-binding domain-containing protein, putative	gene	FAD-binding domain-containing protein, putative	chr5	27727559	27728433	-	CDS,promoter,downstream
28	LOC_Os03g36700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20347467	20350971	-	CDS
28	LOC_Os01g54220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	31186230	31193782	+	CDS
28	LOC_Os04g08480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4570085	4575170	-	CDS,promoter,downstream
28	LOC_Os02g21060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	12480724	12485768	-	CDS,promoter,downstream
28	LOC_Os09g03760	hypothetical protein	gene	hypothetical protein	chr9	1904065	1904767	-	CDS,downstream
28	LOC_Os05g16260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9202629	9205769	+	CDS,promoter,downstream
28	LOC_Os10g06240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3199706	3202663	-	CDS,promoter,downstream
28	LOC_Os12g17660	hypothetical protein	gene	hypothetical protein	chr12	10112963	10114536	-	CDS,promoter,downstream
28	LOC_Os09g24008	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14295096	14295831	-	three_prime_UTR,promoter,downstream
28	LOC_Os11g04300	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	1780685	1791875	-	CDS,downstream
28	LOC_Os04g09330	hypothetical protein	gene	hypothetical protein	chr4	4950320	4955493	+	CDS,promoter,downstream
28	LOC_Os02g41970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	25215093	25217139	+	CDS,promoter
28	LOC_Os01g42920	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	24419439	24422099	-	CDS,downstream
28	LOC_Os12g02010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	591045	593348	+	CDS,promoter
28	LOC_Os07g29100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17047133	17050363	-	CDS,downstream
28	LOC_Os10g15230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8002081	8003618	+	CDS,promoter,downstream
28	LOC_Os08g44570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28023624	28029779	+	CDS,downstream
28	LOC_Os09g07090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3440945	3442759	+	CDS,promoter,downstream
28	LOC_Os01g31230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17076960	17080573	-	CDS,downstream
28	LOC_Os11g15120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8508406	8510302	-	CDS,promoter,downstream
28	LOC_Os03g02500	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	916447	920600	-	CDS
28	LOC_Os04g09950	hypothetical protein	gene	hypothetical protein	chr4	5352441	5353232	+	CDS,promoter,downstream
28	LOC_Os09g19450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11643015	11647246	-	CDS
28	LOC_Os08g11920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6984120	6989667	-	CDS,downstream
28	LOC_Os07g09770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5201318	5205977	-	CDS,promoter
28	LOC_Os08g08540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4920589	4924206	-	CDS,promoter,downstream
28	LOC_Os07g42234	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25274697	25280070	+	CDS,downstream
28	LOC_Os07g28450	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	16642335	16646622	+	CDS,promoter,downstream
28	LOC_Os02g55930	hypothetical protein	gene	hypothetical protein	chr2	34231867	34232601	-	CDS
28	LOC_Os01g29050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16259215	16265966	+	CDS,promoter
28	LOC_Os04g19840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11062861	11065899	+	CDS,promoter,downstream
28	LOC_Os10g07190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3773096	3776926	-	CDS,downstream
28	LOC_Os05g26470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15332654	15338355	-	CDS,promoter,downstream
28	LOC_Os09g06360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2991210	2992477	-	CDS,promoter,downstream
28	LOC_Os09g15090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	9145532	9150235	+	CDS
28	LOC_Os10g04790	hypothetical protein	gene	hypothetical protein	chr10	2306776	2307027	+	CDS,promoter,downstream
28	LOC_Os04g29500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17360258	17361995	-	CDS,promoter,downstream
28	LOC_Os03g33819	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19321839	19325630	-	CDS,promoter,downstream
28	LOC_Os06g29140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16624559	16630713	-	CDS
28	LOC_Os07g15959	expressed protein	gene	expressed protein	chr7	9277832	9281991	-	three_prime_UTR,promoter,downstream
28	LOC_Os01g33740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18564639	18570482	-	CDS,promoter
28	LOC_Os11g14510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	8141609	8149999	-	CDS
28	LOC_Os02g16510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	9421771	9425121	-	CDS,promoter,downstream
28	LOC_Os10g07542	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	4037833	4040972	+	CDS,downstream
28	LOC_Os03g40870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	22721502	22727933	+	CDS,promoter,downstream
28	LOC_Os09g10220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	5562389	5571172	-	CDS,downstream
28	LOC_Os04g19660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10957526	10961947	+	CDS,promoter,downstream
28	LOC_Os12g15140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8630338	8638009	-	CDS,promoter,downstream
28	LOC_Os03g28930	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	16401155	16404749	+	CDS
28	LOC_Os02g24770	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	14362871	14366083	+	CDS,downstream
28	LOC_Os04g04530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2162013	2165307	-	CDS,promoter
28	LOC_Os04g01089	unknown	gene	unknown	chr4	65868	66749	-	CDS,promoter,downstream
28	LOC_Os12g39800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	24545397	24557553	-	CDS
28	LOC_Os05g22470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12698342	12700777	-	CDS,promoter
28	LOC_Os03g55860	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	31786937	31793177	+	CDS,downstream
28	LOC_Os06g50789	hypothetical protein	gene	hypothetical protein	chr6	30735061	30737132	-	CDS,promoter
28	LOC_Os06g23940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13981307	13984280	+	CDS
28	LOC_Os09g10440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5705013	5706173	-	CDS,promoter,downstream
28	LOC_Os04g01060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	44539	53982	-	CDS,promoter
28	LOC_Os04g07860	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	4178900	4182688	+	three_prime_UTR,promoter,downstream
28	LOC_Os10g08720	hypothetical protein	gene	hypothetical protein	chr10	4749521	4750070	-	CDS,promoter,downstream
28	LOC_Os03g45040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25418784	25421897	+	CDS,promoter,downstream
28	LOC_Os05g19440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11295349	11297682	-	CDS,downstream
28	LOC_Os06g18058	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10515451	10516884	+	CDS,promoter
28	LOC_Os06g01100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	105083	105418	-	CDS,promoter,downstream
28	LOC_Os09g01400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	315579	316871	+	CDS,promoter,downstream
28	LOC_Os12g19190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	11140108	11143097	+	CDS,promoter,downstream
28	LOC_Os04g50160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29727183	29733338	-	CDS
28	LOC_Os08g24030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	14525701	14528937	+	CDS,promoter,downstream
28	LOC_Os10g17430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8709933	8710520	-	CDS,promoter,downstream
28	LOC_Os08g43030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27196676	27197674	-	CDS,promoter,downstream
28	LOC_Os04g26540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15470415	15471653	-	CDS,promoter
28	LOC_Os07g32750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	19566706	19574595	+	CDS,promoter
28	LOC_Os05g29870	basic salivary proline-rich protein 3 precursor, putative, expressed	gene	basic salivary proline-rich protein 3 precursor, putative, expressed	chr5	17223216	17224068	+	CDS,promoter,downstream
28	LOC_Os08g06850	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	3822764	3826569	+	CDS,promoter,downstream
28	LOC_Os02g21540	hypothetical protein	gene	hypothetical protein	chr2	12780483	12782727	+	CDS
28	LOC_Os04g11560	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	6332667	6333719	-	CDS,promoter,downstream
28	LOC_Os05g15760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8897079	8898188	+	CDS,promoter,downstream
28	LOC_Os11g22810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12661651	12663590	+	CDS,promoter,downstream
28	LOC_Os03g30350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17307869	17311263	+	CDS,downstream
28	LOC_Os09g31330	hypothetical protein	gene	hypothetical protein	chr9	18836405	18837157	+	CDS
28	LOC_Os02g24830	hypothetical protein	gene	hypothetical protein	chr2	14394314	14394841	-	CDS,downstream
28	LOC_Os11g26980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	15058090	15059764	+	CDS,downstream
28	LOC_Os12g26610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15578800	15583212	-	CDS,downstream
28	LOC_Os12g29810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	17788859	17791561	+	CDS
28	LOC_Os07g12000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6649980	6653738	-	CDS,promoter,downstream
28	LOC_Os08g12010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7048428	7051563	+	CDS,downstream
28	LOC_Os09g14310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8452987	8454336	-	CDS,promoter,downstream
28	LOC_Os12g26970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15789003	15795490	+	CDS,downstream
28	LOC_Os04g24940	hypothetical protein	gene	hypothetical protein	chr4	14354488	14357222	+	CDS,promoter,downstream
28	LOC_Os05g27170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	15749683	15753549	+	CDS,promoter
28	LOC_Os06g23010	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	13427643	13430617	+	CDS,promoter,downstream
28	LOC_Os08g39520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	24997905	24999696	+	CDS,downstream
28	LOC_Os09g25660	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr9	15415087	15416486	+	CDS,downstream
28	LOC_Os04g54780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32384637	32387489	+	CDS,promoter,downstream
28	LOC_Os11g02590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	815731	818034	-	CDS
28	LOC_Os12g22530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12715272	12715793	+	CDS,promoter,downstream
28	LOC_Os08g24980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15142087	15148176	-	CDS,promoter,downstream
28	LOC_Os01g01100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	46856	52412	-	CDS,promoter
28	LOC_Os02g29690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17665114	17665728	+	CDS,promoter
28	LOC_Os06g03440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1315412	1316488	-	CDS,downstream
28	LOC_Os03g45110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25453896	25455409	+	CDS,promoter
28	LOC_Os08g11240	hypothetical protein	gene	hypothetical protein	chr8	6606946	6607826	+	CDS,promoter,downstream
28	LOC_Os11g25660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14176691	14179861	+	CDS,promoter,downstream
28	LOC_Os07g16860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9910951	9915843	-	CDS,promoter,downstream
28	LOC_Os04g28440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16659771	16662228	+	CDS,promoter,downstream
28	LOC_Os01g31390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17166869	17167558	-	CDS,promoter,downstream
28	LOC_Os03g07010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3572412	3575859	-	CDS,downstream
28	LOC_Os11g33290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	19221149	19225923	+	CDS
28	LOC_Os02g52020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	31836991	31841109	+	CDS
28	LOC_Os12g28350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16763604	16764951	-	CDS,promoter
28	LOC_Os05g07920	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	4287712	4294754	+	CDS,promoter
28	LOC_Os02g24150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13987867	13989456	+	CDS,downstream
28	LOC_Os12g26490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15481390	15483255	+	CDS,promoter,downstream
28	LOC_Os08g28650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17497743	17499414	+	CDS,promoter,downstream
28	LOC_Os04g16230	hypothetical protein	gene	hypothetical protein	chr4	8810319	8811503	+	CDS,downstream
28	LOC_Os01g55480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	31961580	31964733	-	CDS,promoter
28	LOC_Os07g45610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27215131	27225918	+	CDS,promoter,downstream
28	LOC_Os03g28060	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	16128981	16131943	+	CDS,promoter
28	LOC_Os11g17250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9602841	9604059	-	CDS,promoter,downstream
28	LOC_Os04g06260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3253404	3256256	+	CDS,downstream
28	LOC_Os03g36570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20272859	20282626	+	CDS,promoter,downstream
28	LOC_Os08g15830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9611996	9623459	+	CDS,downstream
28	LOC_Os02g14400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	7906694	7909710	+	CDS,promoter,downstream
28	LOC_Os11g08770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	4659597	4662635	-	CDS,promoter
28	LOC_Os12g31240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18781671	18784026	+	CDS,promoter,downstream
28	LOC_Os09g14940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8946349	8947122	-	CDS,promoter,downstream
28	LOC_Os11g34930	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr11	20000614	20004427	-	CDS
28	LOC_Os07g11700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6469549	6471021	-	CDS
28	LOC_Os09g01240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	199839	202062	+	CDS,promoter,downstream
28	LOC_Os01g32990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	18115766	18120103	+	CDS,promoter,downstream
28	LOC_Os06g30150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17393901	17397615	-	CDS,promoter
28	LOC_Os01g08000	fibronectin type 3 and ankyrin repeat domains 1 protein, putative, expressed	gene	fibronectin type 3 and ankyrin repeat domains 1 protein, putative, expressed	chr1	3869734	3873321	-	CDS,three_prime_UTR,promoter
28	LOC_Os02g21379	unknown	gene	unknown	chr2	12686872	12688845	+	CDS,downstream
28	LOC_Os10g03080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1291603	1293102	+	CDS,promoter,downstream
28	LOC_Os02g24900	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14430684	14431332	+	CDS,promoter,downstream
28	LOC_Os11g44840	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	26665123	26669223	-	CDS,promoter
28	LOC_Os04g53890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	31927956	31932506	+	CDS,promoter
28	LOC_Os05g26010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	15059155	15065262	+	CDS,promoter
28	LOC_Os01g31550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	17256064	17257409	+	CDS,promoter,downstream
28	LOC_Os05g07310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	3882980	3890030	+	CDS,promoter
28	LOC_Os12g21830	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	12285139	12290198	-	CDS,promoter,downstream
28	LOC_Os07g28020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16338071	16340396	+	CDS,promoter,downstream
28	LOC_Os12g31070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18645219	18651648	+	CDS,promoter
28	LOC_Os04g13990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7809122	7815549	-	CDS,promoter,downstream
28	LOC_Os08g30960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19111020	19112746	-	CDS,promoter,downstream
28	LOC_Os02g19270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11255033	11259454	+	CDS,promoter,downstream
28	LOC_Os11g10830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5965663	5968590	-	CDS,promoter
28	LOC_Os05g22590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	12765518	12767899	-	CDS
28	LOC_Os10g12580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7021947	7023560	-	CDS,promoter,downstream
28	LOC_Os05g08210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	4472578	4473904	-	CDS,promoter,downstream
28	LOC_Os12g34670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21013178	21017370	-	CDS
28	LOC_Os03g43230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24104104	24108121	+	CDS,promoter,downstream
28	LOC_Os11g19430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11168212	11173702	+	CDS,promoter,downstream
28	LOC_Os01g24910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14025765	14027807	-	CDS,promoter
28	LOC_Os01g32550	hypothetical protein	gene	hypothetical protein	chr1	17845763	17848804	+	CDS,promoter,downstream
28	LOC_Os07g40760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	24421751	24427483	+	CDS
28	LOC_Os11g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10375946	10377101	+	CDS,promoter,downstream
28	LOC_Os06g23220	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr6	13556095	13558145	-	CDS
28	LOC_Os11g26120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14479415	14485762	-	CDS,promoter,downstream
28	LOC_Os08g29260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17938472	17939479	+	CDS,promoter,downstream
28	LOC_Os08g17690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10823312	10825412	-	CDS,promoter,downstream
28	LOC_Os10g15290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8038169	8039167	-	CDS,promoter,downstream
28	LOC_Os11g23020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12773793	12776871	+	CDS,promoter,downstream
28	LOC_Os08g29880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18364184	18367024	+	CDS
28	LOC_Os04g13320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7395931	7400380	-	CDS,downstream
28	LOC_Os09g03830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1938923	1943488	-	CDS,promoter,downstream
28	LOC_Os11g26250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14564782	14566412	+	CDS,promoter,downstream
28	LOC_Os07g30570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18088274	18091094	+	CDS,downstream
28	LOC_Os04g30440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18008073	18011962	-	CDS,promoter,downstream
28	LOC_Os01g31450	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	17193880	17196710	+	five_prime_UTR,promoter
28	LOC_Os04g01830	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr4	528342	529003	-	CDS,promoter,downstream
28	LOC_Os03g31360	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr3	17863060	17865035	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os09g18310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11231463	11232157	-	CDS,promoter
28	LOC_Os02g28910	hypothetical protein	gene	hypothetical protein	chr2	17119397	17119882	+	CDS,promoter,downstream
28	LOC_Os04g26360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15371626	15374106	-	CDS
28	LOC_Os04g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12763731	12764507	+	CDS,promoter,downstream
28	LOC_Os01g23248	unknown	gene	unknown	chr1	13070262	13070666	+	CDS,promoter,downstream
28	LOC_Os08g10760	hypothetical protein	gene	hypothetical protein	chr8	6324314	6325844	+	CDS,downstream
28	LOC_Os10g42464	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22823981	22824808	+	CDS,promoter,downstream
28	LOC_Os04g16910	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	9242428	9249221	+	CDS,downstream
28	LOC_Os07g30850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18257796	18259749	-	CDS,downstream
28	LOC_Os08g21860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13081127	13087789	-	CDS,promoter,downstream
28	LOC_Os11g22440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12422782	12425358	+	CDS,promoter,downstream
28	LOC_Os06g25550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14936393	14940601	+	CDS,promoter,downstream
28	LOC_Os04g13620	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	7597856	7601146	-	CDS,downstream
28	LOC_Os02g21780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12944745	12946019	+	CDS,downstream
28	LOC_Os08g40770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	25786387	25789647	+	CDS,promoter,downstream
28	LOC_Os06g01730	DNA ligase I, putative	gene	DNA ligase I, putative	chr6	425064	429602	+	CDS,downstream
28	LOC_Os08g17570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10744075	10748326	-	CDS,promoter
28	LOC_Os05g05410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	2685038	2687795	-	CDS,promoter
28	LOC_Os05g29850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17210951	17214285	-	CDS,promoter,downstream
28	LOC_Os02g22760	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	13547151	13552610	-	CDS,promoter,downstream
28	LOC_Os05g19220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11160055	11167687	+	CDS,promoter,downstream
28	LOC_Os12g03210	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr12	1225729	1228934	+	CDS
28	LOC_Os04g13850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7720081	7721372	-	CDS,promoter,downstream
28	LOC_Os10g11620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6430394	6435114	-	CDS,promoter
28	LOC_Os03g57799	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	32931010	32932378	+	CDS,promoter,downstream
28	LOC_Os09g06700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3184500	3186738	-	CDS,promoter,downstream
28	LOC_Os05g15940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8992180	9001418	-	CDS,promoter,downstream
28	LOC_Os05g43330	hypothetical protein	gene	hypothetical protein	chr5	25138069	25138607	-	CDS,downstream
28	LOC_Os02g44400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	26887255	26889882	-	CDS
28	LOC_Os01g24210	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13642959	13645614	+	CDS,downstream
28	LOC_Os02g50650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	30934489	30936206	-	CDS,downstream
28	LOC_Os03g35769	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19820447	19824564	+	CDS,promoter,downstream
28	LOC_Os03g35940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19936190	19938635	+	CDS,promoter,downstream
28	LOC_Os05g19764	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11530262	11532646	+	CDS,promoter,downstream
28	LOC_Os10g28150	zinc knuckle domain containing protein	gene	zinc knuckle domain containing protein	chr10	14542111	14544693	-	CDS,promoter
28	LOC_Os05g11479	unknown	gene	unknown	chr5	6492276	6493929	-	CDS,promoter
28	LOC_Os04g55430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	32783241	32785421	-	CDS,downstream
28	LOC_Os02g29760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17698323	17707429	+	CDS,downstream
28	LOC_Os01g39530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	22272583	22274651	+	CDS,promoter,downstream
28	LOC_Os02g45800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	27892665	27895585	-	CDS,promoter,downstream
28	LOC_Os07g30660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18139486	18142675	-	CDS,downstream
28	LOC_Os05g09330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5208488	5215994	+	CDS,promoter,downstream
28	LOC_Os11g47451	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	28146495	28149274	-	CDS
28	LOC_Os05g17290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9906934	9907974	-	CDS,promoter,downstream
28	LOC_Os10g05710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	2874943	2881354	+	CDS,promoter,downstream
28	LOC_Os02g25110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14568248	14570920	-	CDS,promoter
28	LOC_Os05g20080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	11739362	11739955	-	CDS,promoter,downstream
28	LOC_Os09g04980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2679970	2680590	-	CDS,promoter,downstream
28	LOC_Os09g27180	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	16520438	16524392	-	CDS,promoter
28	LOC_Os06g29520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16919166	16921490	+	CDS,downstream
28	LOC_Os02g17980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10432777	10435998	-	CDS,downstream
28	LOC_Os08g24970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15135338	15138900	+	CDS,promoter,downstream
28	LOC_Os11g18600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10488883	10492745	-	CDS,promoter,downstream
28	LOC_Os07g31900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18964982	18970257	-	CDS,downstream
28	LOC_Os01g63320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36703044	36704033	-	CDS
28	LOC_Os09g02500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1034701	1038055	-	CDS,promoter
28	LOC_Os12g25230	hypothetical protein	gene	hypothetical protein	chr12	14510876	14511691	+	CDS,promoter,downstream
28	LOC_Os11g43290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25643027	25648868	+	CDS,downstream
28	LOC_Os04g31300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	18556079	18558936	+	CDS,promoter,downstream
28	LOC_Os11g17740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	9908295	9912543	+	CDS,promoter,downstream
28	LOC_Os08g19880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11908801	11909997	+	CDS,promoter,downstream
28	LOC_Os12g26740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15667135	15670049	+	CDS,downstream
28	LOC_Os03g35540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19689504	19696117	-	CDS,promoter,downstream
28	LOC_Os12g22820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	12882112	12883317	+	CDS,promoter,downstream
28	LOC_Os12g43460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	26928862	26931908	-	CDS,downstream
28	LOC_Os07g24300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13814401	13815264	-	CDS,promoter,downstream
28	LOC_Os02g24520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14205074	14206909	-	CDS,promoter,downstream
28	LOC_Os09g17040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10445721	10447432	-	CDS,promoter
28	LOC_Os11g02990	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	1040773	1042495	-	CDS,promoter,downstream
28	LOC_Os08g14250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8539287	8544359	+	CDS,promoter,downstream
28	LOC_Os07g18440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10906744	10908139	+	CDS,promoter,downstream
28	LOC_Os05g20160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11795643	11801533	+	CDS,promoter,downstream
28	LOC_Os07g13850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7925940	7929455	-	CDS,promoter,downstream
28	LOC_Os03g41830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23225613	23231133	-	CDS,promoter,downstream
28	LOC_Os06g27490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15562657	15565853	-	CDS,promoter,downstream
28	LOC_Os07g23020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12983362	12984173	+	CDS,promoter,downstream
28	LOC_Os03g32940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18831837	18835546	-	CDS,promoter,downstream
28	LOC_Os03g22980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	13268909	13270331	+	CDS,promoter
28	LOC_Os03g57370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	32712626	32718747	+	CDS,downstream
28	LOC_Os12g27880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16435410	16439255	-	CDS,promoter,downstream
28	LOC_Os10g16700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8252881	8253528	-	CDS,promoter,downstream
28	LOC_Os11g24920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13727457	13730383	+	CDS,downstream
28	LOC_Os11g23810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13010820	13016302	-	CDS,downstream
28	LOC_Os04g20360	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	11386240	11388420	-	CDS,promoter
28	LOC_Os12g21520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12102048	12103437	+	CDS,promoter,downstream
28	LOC_Os11g26410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14665882	14668615	-	CDS,promoter
28	LOC_Os02g51260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31379642	31382690	-	CDS,promoter,downstream
28	LOC_Os12g07910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4011272	4018455	+	CDS,downstream
28	LOC_Os11g14560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8172159	8183164	-	CDS,promoter
28	LOC_Os02g39130	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	23628750	23629819	-	CDS
28	LOC_Os04g16400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8904116	8908906	-	CDS,promoter,downstream
28	LOC_Os06g31000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18030977	18040297	+	CDS
28	LOC_Os08g05430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2865491	2870451	+	CDS,promoter,downstream
28	LOC_Os10g18420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9291924	9295726	-	CDS,promoter,downstream
28	LOC_Os01g60389	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	34929362	34932593	+	CDS,promoter,downstream
28	LOC_Os11g15360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8689582	8694415	+	CDS,promoter
28	LOC_Os02g23824	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13763042	13764621	-	CDS,promoter,downstream
28	LOC_Os08g40670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25749206	25750612	-	CDS,downstream
28	LOC_Os03g33000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	18862873	18865136	+	CDS,promoter,downstream
28	LOC_Os07g16420	OsFBX232 - F-box domain containing protein	gene	OsFBX232 - F-box domain containing protein	chr7	9615852	9621220	+	CDS,downstream
28	LOC_Os08g34690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	21794761	21798305	-	CDS,downstream
28	LOC_Os09g09810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5315711	5320269	-	CDS,promoter,downstream
28	LOC_Os10g16610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8213046	8214042	-	CDS,promoter,downstream
28	LOC_Os06g25540	hypothetical protein	gene	hypothetical protein	chr6	14932982	14936275	+	CDS,downstream
28	LOC_Os09g16940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	10356666	10359190	-	CDS,promoter
28	LOC_Os09g29510	OsWAK80 - OsWAK receptor-like protein kinase, expressed	gene	OsWAK80 - OsWAK receptor-like protein kinase, expressed	chr9	17948935	17953034	-	CDS,promoter
28	LOC_Os07g22090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12342660	12346603	+	CDS,downstream
28	LOC_Os12g21600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12135688	12142697	+	CDS,promoter
28	LOC_Os03g35894	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19914636	19915493	-	CDS,promoter,downstream
28	LOC_Os03g21290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	12175320	12181500	-	CDS
28	LOC_Os07g42530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	25448411	25454181	+	CDS,downstream
28	LOC_Os12g37500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22977001	22980420	+	CDS
28	LOC_Os03g33530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19151290	19159384	-	CDS,promoter,downstream
28	LOC_Os04g05610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2846374	2849646	-	CDS,promoter,downstream
28	LOC_Os10g08030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4368427	4372127	-	CDS,promoter,downstream
28	LOC_Os01g44430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25475700	25481929	-	CDS,downstream
28	LOC_Os04g31500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18660416	18666575	+	CDS,downstream
28	LOC_Os05g18200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10469867	10472465	+	CDS,promoter,downstream
28	LOC_Os02g31250	expressed protein	gene	expressed protein	chr2	18723019	18724337	+	five_prime_UTR,CDS,promoter
28	LOC_Os06g28620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	16281070	16281570	+	CDS,promoter,downstream
28	LOC_Os03g35454	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19654532	19663973	-	CDS,promoter,downstream
28	LOC_Os04g11950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6548482	6551520	+	CDS,downstream
28	LOC_Os11g22342	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12342883	12344763	-	CDS,promoter,downstream
28	LOC_Os01g37780	hypothetical protein	gene	hypothetical protein	chr1	21133872	21135371	-	CDS,promoter
28	LOC_Os08g18200	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11155364	11156911	-	CDS,promoter,downstream
28	LOC_Os03g43235	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	24108535	24109757	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os09g01820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	562516	565952	-	CDS,promoter,downstream
28	LOC_Os12g23990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13629073	13636238	+	CDS,downstream
28	LOC_Os12g31600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18989104	18992436	-	CDS,promoter
28	LOC_Os01g18470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10379924	10386845	-	CDS,promoter
28	LOC_Os02g08240	STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	gene	STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	chr2	4376785	4380320	+	CDS,promoter,downstream
28	LOC_Os06g15300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8678903	8681755	+	CDS,promoter,downstream
28	LOC_Os03g26900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15355784	15357244	-	CDS,promoter
28	LOC_Os12g19330	hypothetical protein	gene	hypothetical protein	chr12	11205904	11206516	-	CDS,downstream
28	LOC_Os08g36280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22855348	22858620	-	CDS
28	LOC_Os05g01150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	129603	132863	-	CDS,downstream
28	LOC_Os08g31310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	19366634	19367570	-	CDS,downstream
28	LOC_Os06g17640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10247477	10248910	+	CDS,promoter,downstream
28	LOC_Os05g49600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	28394188	28398686	+	CDS,downstream
28	LOC_Os07g23870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13477997	13482354	-	CDS
28	LOC_Os12g43020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26688201	26693976	+	CDS,promoter
28	LOC_Os08g18750	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11193834	11196638	+	CDS,promoter,downstream
28	LOC_Os11g10500	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5732874	5739085	+	CDS
28	LOC_Os10g23990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	12219929	12222743	-	CDS,promoter,downstream
28	LOC_Os07g17510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10345897	10351135	+	CDS,promoter
28	LOC_Os01g47140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	26943754	26946106	+	CDS,promoter,downstream
28	LOC_Os07g26830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15522498	15526266	+	CDS,promoter,downstream
28	LOC_Os11g46170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27492600	27494166	-	CDS,promoter
28	LOC_Os09g23999	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14293061	14293829	-	three_prime_UTR,promoter,downstream
28	LOC_Os12g42450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26348073	26350606	+	CDS,promoter,downstream
28	LOC_Os05g28820	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	16829461	16835688	+	CDS
28	LOC_Os09g26720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16231928	16232890	+	CDS,downstream
28	LOC_Os04g12000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6582390	6586739	-	CDS,promoter,downstream
28	LOC_Os01g02810	resistance-related receptor-like kinase, putative	gene	resistance-related receptor-like kinase, putative	chr1	986591	989647	+	CDS,downstream
28	LOC_Os12g43470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	26934737	26938071	+	CDS,downstream
28	LOC_Os04g02230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	763268	769753	-	CDS,promoter,downstream
28	LOC_Os05g36210	expressed protein	gene	expressed protein	chr5	21411401	21412360	-	CDS,downstream
28	LOC_Os09g38900	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	22333908	22345071	+	CDS,promoter
28	LOC_Os10g14040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	7649642	7655925	+	CDS
28	LOC_Os08g24650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14893689	14899784	-	CDS,promoter,downstream
28	LOC_Os11g10900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6006402	6012107	+	CDS,promoter,downstream
28	LOC_Os08g32260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19981829	19989175	-	CDS,promoter,downstream
28	LOC_Os07g23460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	13247681	13253753	-	CDS,promoter
28	LOC_Os11g22290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12312178	12313539	+	CDS,downstream
28	LOC_Os11g38690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22495917	22499614	-	CDS,downstream
28	LOC_Os12g12160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	6664052	6670208	-	CDS,promoter
28	LOC_Os08g15580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9469419	9472358	-	CDS,promoter,downstream
28	LOC_Os09g02940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1376970	1377983	-	CDS,promoter,downstream
28	LOC_Os08g17550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10738297	10740608	-	CDS,promoter,downstream
28	LOC_Os02g18580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10836766	10837275	+	CDS,promoter,downstream
28	LOC_Os11g30470	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr11	17249874	17253781	+	CDS
28	LOC_Os12g05290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2353230	2357996	-	CDS
28	LOC_Os08g12260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7210345	7213932	-	CDS,downstream
28	LOC_Os12g19770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11517211	11523573	-	CDS,promoter,downstream
28	LOC_Os10g01440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	264080	266099	+	CDS,downstream
28	LOC_Os08g36290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	22861629	22867510	-	CDS,downstream
28	LOC_Os09g26020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15639151	15642456	+	CDS,downstream
28	LOC_Os11g29074	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16378048	16382246	+	CDS,promoter
28	LOC_Os03g16620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	9174457	9176211	+	CDS,promoter
28	LOC_Os07g40050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24039240	24046335	+	CDS,promoter
28	LOC_Os03g47890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	27213257	27216386	-	CDS,promoter
28	LOC_Os12g34650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20996294	21003122	-	CDS,promoter,downstream
28	LOC_Os02g29660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17652301	17654978	+	CDS,promoter,downstream
28	LOC_Os12g34090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20560445	20567178	-	CDS,promoter,downstream
28	LOC_Os12g14120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8009233	8012987	-	CDS,promoter
28	LOC_Os08g32790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	20319108	20324299	-	CDS,promoter,downstream
28	LOC_Os04g06080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3153508	3157941	+	CDS,promoter,downstream
28	LOC_Os08g28770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17595232	17600489	-	CDS,promoter
28	LOC_Os06g29960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	17248809	17251830	-	CDS,promoter,downstream
28	LOC_Os12g17730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10151865	10152413	-	CDS,promoter,downstream
28	LOC_Os08g13810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8242755	8247315	+	CDS,downstream
28	LOC_Os08g35920	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr8	22650544	22652270	+	CDS,promoter
28	LOC_Os02g30880	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	18421042	18426637	-	CDS,promoter
28	LOC_Os11g14090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7837064	7844400	-	CDS
28	LOC_Os09g12950	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	7466242	7468075	-	CDS,promoter
28	LOC_Os06g32260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18781913	18785245	+	CDS,promoter,downstream
28	LOC_Os11g19590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11284757	11288097	+	CDS,promoter,downstream
28	LOC_Os06g07720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3735816	3741496	-	CDS,promoter
28	LOC_Os04g24350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	13943172	13947141	+	CDS,downstream
28	LOC_Os04g17130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9372900	9383400	-	CDS,promoter,downstream
28	LOC_Os09g22230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13442938	13449533	-	CDS,promoter
28	LOC_Os12g40230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	24869226	24871717	-	CDS
28	LOC_Os10g11220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6238579	6241811	-	CDS,promoter,downstream
28	LOC_Os07g27090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15703769	15704665	+	CDS,promoter,downstream
28	LOC_Os05g26110	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr5	15124047	15133191	+	CDS,downstream
28	LOC_Os04g26880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	15724578	15731726	-	CDS
28	LOC_Os07g16280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	9497279	9497874	-	CDS,downstream
28	LOC_Os05g38440	precollagen-D, putative	gene	precollagen-D, putative	chr5	22481401	22481751	-	CDS,promoter,downstream
28	LOC_Os06g03130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1162379	1162878	-	CDS,promoter
28	LOC_Os02g15190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	8470287	8473936	+	CDS,promoter,downstream
28	LOC_Os12g27570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16224157	16225981	+	CDS,promoter,downstream
28	LOC_Os06g16090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9159783	9162500	-	CDS,promoter,downstream
28	LOC_Os09g13710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8018824	8024382	-	CDS,promoter,downstream
28	LOC_Os04g48970	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr4	29015251	29018824	-	CDS,promoter
28	LOC_Os11g22820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12664081	12664959	-	CDS,promoter,downstream
28	LOC_Os02g01430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	255592	258924	-	CDS,promoter
28	LOC_Os06g11540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6115561	6118485	+	CDS,promoter,downstream
28	LOC_Os07g16810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9861680	9874929	+	CDS,promoter
28	LOC_Os10g18540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9331863	9334119	+	CDS,downstream
28	LOC_Os04g08490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4579113	4582464	-	CDS,promoter
28	LOC_Os11g16924	expressed protein	gene	expressed protein	chr11	9383746	9387946	+	three_prime_UTR,downstream
28	LOC_Os04g13900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7756645	7758870	-	CDS,promoter,downstream
28	LOC_Os02g26460	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr2	15527268	15527984	-	CDS,promoter,downstream
28	LOC_Os12g33260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20092975	20095625	+	CDS,promoter,downstream
28	LOC_Os07g18920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11204448	11208517	-	CDS,promoter,downstream
28	LOC_Os03g41960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	23301719	23317015	-	CDS,downstream
28	LOC_Os06g38180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22604602	22605860	-	CDS,promoter
28	LOC_Os11g44150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26180048	26184559	+	CDS
28	LOC_Os01g25950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14714562	14717361	+	CDS,promoter,downstream
28	LOC_Os08g11930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6991425	6998096	+	CDS,promoter
28	LOC_Os08g17750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	10858713	10864126	-	CDS
28	LOC_Os07g32190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	19134732	19135781	+	CDS,downstream
28	LOC_Os08g17040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10431510	10441532	+	CDS,promoter,downstream
28	LOC_Os05g26230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15201722	15206143	+	CDS,promoter,downstream
28	LOC_Os03g59190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	33695349	33700010	+	CDS
28	LOC_Os01g51180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	29415233	29422179	+	CDS
28	LOC_Os09g01130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	133700	134827	-	CDS,promoter,downstream
28	LOC_Os05g08190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4465568	4466950	-	CDS,promoter,downstream
28	LOC_Os08g26544	hypothetical protein	gene	hypothetical protein	chr8	16155404	16158287	-	CDS,promoter
28	LOC_Os04g18690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10342133	10348185	+	CDS,promoter,downstream
28	LOC_Os09g14930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8941334	8945761	-	CDS,downstream
28	LOC_Os04g08400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4493393	4499345	+	CDS
28	LOC_Os01g51820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	29788922	29795800	+	CDS,downstream
28	LOC_Os07g16580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9719900	9721824	-	CDS,promoter,downstream
28	LOC_Os12g26830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15716929	15720846	-	CDS,promoter,downstream
28	LOC_Os11g19670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11324108	11324673	+	CDS,promoter
28	LOC_Os01g50220	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr1	28853704	28858876	-	CDS
28	LOC_Os06g32060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18643750	18651329	+	CDS,downstream
28	LOC_Os01g28200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	15797976	15800719	+	CDS
28	LOC_Os03g37650	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	20880129	20885099	-	CDS,promoter
28	LOC_Os10g03300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	1394909	1398458	+	CDS,downstream
28	LOC_Os06g37400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22102579	22112818	-	CDS,promoter,downstream
28	LOC_Os09g07740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	3907395	3911298	-	CDS,promoter
28	LOC_Os09g29920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	18187917	18193978	+	CDS
28	LOC_Os04g22620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12803255	12806439	-	CDS,promoter,downstream
28	LOC_Os08g32820	variant latency associated nuclear antigen, putative	gene	variant latency associated nuclear antigen, putative	chr8	20339845	20340870	+	CDS,promoter,downstream
28	LOC_Os12g12310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6770883	6771378	-	CDS,downstream
28	LOC_Os04g17140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9388533	9391034	+	CDS,promoter,downstream
28	LOC_Os04g30870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	18271656	18280169	-	CDS,promoter
28	LOC_Os05g11930	hypothetical protein	gene	hypothetical protein	chr5	6793295	6793672	+	CDS,promoter,downstream
28	LOC_Os08g18210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11157756	11162418	-	CDS,promoter,downstream
28	LOC_Os08g10960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6462002	6463264	-	CDS,promoter,downstream
28	LOC_Os03g03220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	1367900	1370813	-	CDS,promoter
28	LOC_Os05g50530	hAT dimerisation domain containing protein	gene	hAT dimerisation domain containing protein	chr5	28914095	28917027	+	CDS,promoter,downstream
28	LOC_Os11g21950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12126228	12128419	-	CDS
28	LOC_Os12g08564	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	4336650	4353242	+	five_prime_UTR
28	LOC_Os10g17090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	8495681	8497861	-	CDS,promoter,downstream
28	LOC_Os05g27430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15885558	15889432	-	CDS,promoter,downstream
28	LOC_Os12g12270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	6734459	6736639	+	CDS
28	LOC_Os04g22630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12809178	12813110	+	CDS,promoter,downstream
28	LOC_Os12g31020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18603018	18607872	-	CDS,downstream
28	LOC_Os07g16400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9588520	9600363	+	CDS
28	LOC_Os06g21780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12584395	12588840	+	CDS,promoter
28	LOC_Os12g25650	hypothetical protein	gene	hypothetical protein	chr12	14844949	14846006	-	CDS,promoter,downstream
28	LOC_Os02g01679	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	376921	378263	-	CDS,downstream
28	LOC_Os01g13440	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr1	7483910	7484733	+	three_prime_UTR,promoter,downstream
28	LOC_Os10g13430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7270864	7279217	+	CDS
28	LOC_Os05g16950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9661179	9664989	-	CDS,promoter,downstream
28	LOC_Os10g14880	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	7798755	7799096	-	CDS,promoter,downstream
28	LOC_Os09g16770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10255260	10256571	-	CDS,promoter
28	LOC_Os11g26220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14547525	14550283	+	CDS,downstream
28	LOC_Os11g44210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	26227430	26233640	+	CDS,downstream
28	LOC_Os07g17640	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10418430	10419797	-	CDS,promoter,downstream
28	LOC_Os04g47760	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr4	28146181	28148163	+	CDS,promoter
28	LOC_Os05g17960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10321081	10327177	+	CDS,promoter,downstream
28	LOC_Os05g20410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11973306	11974767	+	CDS,promoter,downstream
28	LOC_Os05g18740	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	10861427	10864170	-	five_prime_UTR,CDS,downstream
28	LOC_Os06g21059	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12163323	12172052	-	CDS,promoter,downstream
28	LOC_Os09g04820	hypothetical protein	gene	hypothetical protein	chr9	2568301	2570428	+	CDS,downstream
28	LOC_Os04g16620	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9034347	9035060	-	CDS,promoter,downstream
28	LOC_Os06g23340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13624304	13627908	+	CDS,promoter
28	LOC_Os12g07410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3657273	3658295	+	CDS,promoter,downstream
28	LOC_Os11g24000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13134807	13139116	+	CDS,promoter,downstream
28	LOC_Os03g49090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27957717	27960466	+	CDS
28	LOC_Os07g03337	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	1336977	1339802	+	CDS
28	LOC_Os12g28500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16835455	16837301	+	CDS,promoter,downstream
28	LOC_Os02g22700	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13522721	13527763	-	CDS,promoter,downstream
28	LOC_Os08g12990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7704974	7715630	-	CDS
28	LOC_Os12g15000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8569634	8570586	+	CDS,promoter,downstream
28	LOC_Os06g42900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25772770	25776368	+	CDS,downstream
28	LOC_Os05g51290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29357561	29360864	-	CDS,promoter
28	LOC_Os12g21560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12115592	12118973	-	CDS
28	LOC_Os11g31240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17749922	17754495	-	CDS,promoter,downstream
28	LOC_Os06g29420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	16844568	16847921	-	CDS,promoter,downstream
28	LOC_Os02g53940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	33014746	33018077	-	CDS,promoter
28	LOC_Os04g32440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19276709	19279619	-	CDS,promoter
28	LOC_Os10g24220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12336254	12339457	+	CDS,promoter,downstream
28	LOC_Os09g07070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3426082	3430880	+	CDS,promoter,downstream
28	LOC_Os08g12540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7420745	7423667	-	CDS,promoter,downstream
28	LOC_Os01g24220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	13647090	13649453	+	CDS,promoter
28	LOC_Os03g44240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24856501	24860861	-	CDS,promoter
28	LOC_Os12g19250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11159459	11162452	+	CDS,promoter
28	LOC_Os06g36190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21195072	21199518	+	CDS,promoter,downstream
28	LOC_Os10g06550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3361925	3368972	+	CDS,promoter,downstream
28	LOC_Os07g28050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16352263	16362001	-	CDS
28	LOC_Os05g37100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	21624887	21626932	-	CDS,promoter,downstream
28	LOC_Os07g30650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18135765	18139131	+	CDS,downstream
28	LOC_Os11g02880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	974834	982948	+	CDS,promoter,downstream
28	LOC_Os05g19580	hypothetical protein	gene	hypothetical protein	chr5	11404224	11406685	+	CDS,promoter,downstream
28	LOC_Os02g45550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	27708945	27714992	-	CDS,downstream
28	LOC_Os07g16160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9420415	9422305	+	CDS,promoter,downstream
28	LOC_Os11g30590	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr11	17341763	17345555	+	CDS
28	LOC_Os01g06700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	3160320	3166666	-	CDS,promoter
28	LOC_Os06g35210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20533183	20540697	+	CDS,downstream
28	LOC_Os01g15380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	8617914	8620205	-	CDS,promoter,downstream
28	LOC_Os11g44530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26453922	26459772	-	CDS,downstream
28	LOC_Os03g37630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	20862598	20866282	+	CDS,promoter
28	LOC_Os02g48940	expressed protein	gene	expressed protein	chr2	29921616	29924744	+	CDS,promoter,downstream
28	LOC_Os12g16980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9719259	9722034	+	CDS,promoter,downstream
28	LOC_Os09g04770	hypothetical protein	gene	hypothetical protein	chr9	2538390	2539148	-	CDS,promoter,downstream
28	LOC_Os10g07100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	3734618	3735013	+	CDS,promoter,downstream
28	LOC_Os04g24680	hypothetical protein	gene	hypothetical protein	chr4	14157441	14158750	-	CDS,downstream
28	LOC_Os01g37170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20759530	20760562	+	CDS,downstream
28	LOC_Os12g16150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9217754	9224440	-	CDS,promoter,downstream
28	LOC_Os06g05040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	2221262	2227416	-	CDS,promoter
28	LOC_Os03g29120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16534917	16537957	-	CDS,promoter,downstream
28	LOC_Os05g33120	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	19355674	19358339	-	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os04g10120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5459305	5461547	+	CDS,promoter,downstream
28	LOC_Os09g14780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	8791417	8792435	+	CDS,promoter,downstream
28	LOC_Os05g34350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	20295036	20301662	+	CDS,promoter
28	LOC_Os06g24270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14202787	14205497	+	CDS,downstream
28	LOC_Os03g52740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	30224531	30227702	-	CDS,promoter
28	LOC_Os04g22080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12491703	12495627	-	CDS
28	LOC_Os02g15510	BED zinc finger family protein	gene	BED zinc finger family protein	chr2	8694018	8697791	-	CDS
28	LOC_Os03g54244	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	31102410	31107049	+	CDS
28	LOC_Os01g08720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	4356724	4360055	+	CDS,downstream
28	LOC_Os12g30690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18400800	18404355	-	CDS,promoter
28	LOC_Os11g45660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27144945	27148177	-	CDS,downstream
28	LOC_Os01g42020	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr1	23822042	23827340	-	CDS,promoter
28	LOC_Os12g16380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9375600	9378693	+	CDS,downstream
28	LOC_Os06g29930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17234720	17236520	-	CDS,promoter,downstream
28	LOC_Os04g49394	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr4	29290959	29295925	-	CDS,promoter
28	LOC_Os02g20120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11854049	11857200	-	CDS,promoter,downstream
28	LOC_Os09g04070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2099573	2105728	+	CDS,downstream
28	LOC_Os08g24060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14542638	14544041	+	CDS,downstream
28	LOC_Os06g48580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	29389781	29393947	+	CDS,promoter,downstream
28	LOC_Os01g28170	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	15785526	15789878	+	CDS,downstream
28	LOC_Os12g23560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13334361	13335945	+	CDS,promoter
28	LOC_Os12g16390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9380407	9382020	-	CDS,promoter,downstream
28	LOC_Os02g36470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22020210	22025828	+	CDS,promoter,downstream
28	LOC_Os12g16850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9659720	9663025	+	CDS,downstream
28	LOC_Os06g42570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25598123	25601217	+	CDS,downstream
28	LOC_Os08g15820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9605964	9606743	-	CDS,promoter,downstream
28	LOC_Os11g25210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13898179	13904161	+	CDS
28	LOC_Os11g27870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15575266	15578306	+	CDS,promoter,downstream
28	LOC_Os07g17700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10448017	10450960	+	CDS,promoter
28	LOC_Os02g28950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17129166	17131056	-	CDS,promoter,downstream
28	LOC_Os09g01870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	594300	594917	-	CDS,downstream
28	LOC_Os01g19010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10740316	10742453	-	CDS,promoter
28	LOC_Os07g19320	stripe rust resistance protein Yr10, putative	gene	stripe rust resistance protein Yr10, putative	chr7	11430991	11434885	-	CDS,downstream
28	LOC_Os11g46160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27487513	27489723	-	CDS,downstream
28	LOC_Os10g07582	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	4148624	4159089	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g19130	hypothetical protein	gene	hypothetical protein	chr5	11097339	11097985	-	CDS,promoter,downstream
28	LOC_Os06g36060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21072819	21078104	+	CDS
28	LOC_Os07g12740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7277525	7280266	+	CDS,downstream
28	LOC_Os10g19919	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	9913248	9916649	+	three_prime_UTR,promoter,downstream
28	LOC_Os10g10350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5699961	5705804	+	CDS,downstream
28	LOC_Os06g39540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23476619	23480971	-	CDS,downstream
28	LOC_Os04g13970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7801660	7804287	-	CDS,promoter,downstream
28	LOC_Os09g01120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	125694	127645	-	CDS,promoter,downstream
28	LOC_Os10g14120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7680099	7683186	-	CDS,promoter,downstream
28	LOC_Os11g26450	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14679635	14680951	+	CDS,promoter,downstream
28	LOC_Os04g01100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	68735	69697	-	CDS,promoter,downstream
28	LOC_Os02g11090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	5943967	5946323	+	CDS
28	LOC_Os03g41890	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	23260248	23261006	+	three_prime_UTR,promoter,downstream
28	LOC_Os07g17440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	10292463	10296161	+	CDS,promoter,downstream
28	LOC_Os09g06780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3239396	3241605	-	CDS,downstream
28	LOC_Os08g12270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7216892	7220223	-	CDS,promoter
28	LOC_Os07g17820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10540934	10541245	+	CDS,downstream
28	LOC_Os11g04080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	1648846	1651020	-	CDS
28	LOC_Os07g38320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	23018634	23023208	+	CDS,promoter
28	LOC_Os12g01270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	156852	159032	-	CDS,downstream
28	LOC_Os05g34190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	20153953	20157464	+	CDS,downstream
28	LOC_Os01g29370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16460256	16463167	+	CDS,promoter,downstream
28	LOC_Os03g07670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	3893828	3897157	+	CDS,downstream
28	LOC_Os11g27480	hypothetical protein	gene	hypothetical protein	chr11	15349331	15350269	+	CDS,promoter,downstream
28	LOC_Os01g22794	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12813535	12816602	+	CDS,downstream
28	LOC_Os05g51010	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	29213970	29217878	-	CDS,promoter
28	LOC_Os02g55850	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	34183635	34184018	+	CDS,downstream
28	LOC_Os11g42820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25326509	25327034	-	CDS,promoter,downstream
28	LOC_Os05g23110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13114430	13117586	-	CDS,promoter,downstream
28	LOC_Os06g09110	hypothetical protein	gene	hypothetical protein	chr6	4582309	4584737	+	CDS,promoter
28	LOC_Os11g17270	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	9612149	9613698	+	CDS,promoter,downstream
28	LOC_Os02g22620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13481010	13483606	-	CDS,promoter
28	LOC_Os07g22610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	12722352	12729044	+	CDS,downstream
28	LOC_Os07g24880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14147265	14150718	-	CDS,promoter
28	LOC_Os03g15170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8289864	8290983	+	CDS,promoter,downstream
28	LOC_Os08g03910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1862440	1864301	+	CDS,downstream
28	LOC_Os02g01390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	230669	236824	+	CDS
28	LOC_Os08g40290	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	25502599	25508045	-	CDS,promoter,downstream
28	LOC_Os11g08536	hypothetical protein	gene	hypothetical protein	chr11	4505263	4506128	+	CDS,downstream
28	LOC_Os05g28610	hypothetical protein	gene	hypothetical protein	chr5	16688896	16689870	-	CDS,promoter,downstream
28	LOC_Os02g50310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	30700973	30702611	-	CDS
28	LOC_Os03g35870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19886933	19893901	-	CDS,promoter,downstream
28	LOC_Os04g22160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12543960	12546975	+	CDS,promoter,downstream
28	LOC_Os01g27660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15425797	15429562	-	CDS,promoter,downstream
28	LOC_Os04g16150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8764187	8769489	-	CDS
28	LOC_Os07g18810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11131337	11134323	-	CDS,promoter,downstream
28	LOC_Os08g27110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16564840	16569275	-	CDS,promoter,downstream
28	LOC_Os01g62330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36072838	36074631	+	CDS,promoter,downstream
28	LOC_Os05g26200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	15190650	15192151	-	CDS,promoter
28	LOC_Os05g14120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7889360	7892367	-	CDS,promoter
28	LOC_Os08g11980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7026968	7037444	-	CDS,promoter
28	LOC_Os09g08180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4234943	4244725	-	CDS,downstream
28	LOC_Os01g33120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	18233040	18235960	-	CDS,downstream
28	LOC_Os11g09000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	4776038	4778212	-	CDS,promoter,downstream
28	LOC_Os04g20150	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11213885	11215643	+	CDS,promoter,downstream
28	LOC_Os03g13350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7201336	7205833	-	CDS
28	LOC_Os04g07330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3893944	3899970	+	CDS,promoter,downstream
28	LOC_Os12g01640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	381478	387555	-	CDS,promoter,downstream
28	LOC_Os07g13000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7456025	7458151	-	CDS,promoter,downstream
28	LOC_Os06g32430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18862722	18864903	-	CDS,promoter,downstream
28	LOC_Os07g22970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12952979	12957432	+	CDS,promoter,downstream
28	LOC_Os10g22140	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	11362972	11365951	-	CDS,promoter,downstream
28	LOC_Os07g18210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10794425	10799422	+	CDS,promoter
28	LOC_Os01g29670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16621697	16624936	-	CDS,promoter,downstream
28	LOC_Os09g02630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1131915	1137667	+	CDS
28	LOC_Os06g40290	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	23993611	23994355	+	CDS,promoter,downstream
28	LOC_Os09g10120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5507543	5510745	-	CDS,promoter,downstream
28	LOC_Os09g01560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	394980	401077	-	CDS,promoter,downstream
28	LOC_Os07g39340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	23565142	23567598	+	CDS,downstream
28	LOC_Os12g39540	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr12	24331678	24336224	-	CDS,downstream
28	LOC_Os06g22160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12861431	12863379	-	CDS,promoter,downstream
28	LOC_Os08g10810	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6365002	6367530	+	CDS,promoter,downstream
28	LOC_Os12g41730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	25812587	25818652	+	CDS,promoter
28	LOC_Os10g11696	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6482244	6484587	+	CDS,promoter,downstream
28	LOC_Os05g51910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29724741	29729281	-	CDS,promoter
28	LOC_Os05g14400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8111039	8117569	-	CDS
28	LOC_Os11g22680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12583921	12588026	-	CDS,promoter,downstream
28	LOC_Os01g58720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	33942533	33945565	-	CDS,promoter
28	LOC_Os03g31200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	17761960	17766330	-	CDS,promoter,downstream
28	LOC_Os02g35849	unknown	gene	unknown	chr2	21530597	21532263	+	CDS
28	LOC_Os09g21570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13046789	13050121	-	CDS,promoter
28	LOC_Os10g13650	hypothetical protein	gene	hypothetical protein	chr10	7424393	7426859	+	CDS,promoter
28	LOC_Os01g27280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15222079	15229209	+	CDS,downstream
28	LOC_Os11g14590	hypothetical protein	gene	hypothetical protein	chr11	8209917	8216043	+	CDS,promoter,downstream
28	LOC_Os02g16190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9199867	9204279	+	CDS,promoter,downstream
28	LOC_Os03g51280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	29335418	29338485	+	CDS,downstream
28	LOC_Os04g49380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	29283414	29290230	+	CDS,downstream
28	LOC_Os11g38320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	22228497	22230671	-	CDS
28	LOC_Os04g35450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21403782	21406481	+	CDS,promoter
28	LOC_Os09g06950	expressed protein	gene	expressed protein	chr9	3354804	3355603	+	three_prime_UTR,promoter,downstream
28	LOC_Os07g14410	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	8224347	8229245	-	CDS,promoter
28	LOC_Os05g07190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	3792669	3797021	-	CDS
28	LOC_Os02g47690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29150245	29155978	+	CDS,promoter
28	LOC_Os01g01240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	107618	113983	+	CDS,downstream
28	LOC_Os09g12930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	7450933	7455160	-	CDS,promoter,downstream
28	LOC_Os03g52190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	29953353	29959316	+	CDS
28	LOC_Os01g40499	S-locus lectin protein kinase family protein, putative, expressed	gene	S-locus lectin protein kinase family protein, putative, expressed	chr1	22878860	22894897	-	five_prime_UTR
28	LOC_Os12g20200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11777867	11779406	+	CDS,promoter,downstream
28	LOC_Os09g01080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	101249	101990	-	CDS,promoter,downstream
28	LOC_Os08g17740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10846442	10848806	+	CDS,downstream
28	LOC_Os08g44500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27980735	27986868	-	CDS
28	LOC_Os09g27770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	16895684	16898608	+	CDS,promoter,downstream
28	LOC_Os11g37870	stripe rust resistance protein Yr10, putative, expressed	gene	stripe rust resistance protein Yr10, putative, expressed	chr11	21976118	21979264	+	CDS
28	LOC_Os12g23540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13320318	13324118	-	CDS,promoter,downstream
28	LOC_Os08g04070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1972558	1973751	-	CDS,promoter,downstream
28	LOC_Os04g29330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17232202	17238955	+	CDS,promoter,downstream
28	LOC_Os08g14290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8559664	8563467	+	CDS,promoter,downstream
28	LOC_Os08g22920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13776922	13778388	+	CDS,promoter,downstream
28	LOC_Os06g21700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12540967	12545539	-	CDS,promoter,downstream
28	LOC_Os07g12360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7013730	7019330	-	CDS,downstream
28	LOC_Os12g14290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8134921	8141106	-	CDS,promoter,downstream
28	LOC_Os04g25750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14928608	14930638	+	CDS
28	LOC_Os12g26204	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	15272195	15279050	-	CDS,promoter
28	LOC_Os12g12630	hypothetical protein	gene	hypothetical protein	chr12	6956627	6958063	-	CDS
28	LOC_Os10g38560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20510860	20512272	-	CDS,downstream
28	LOC_Os08g05220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2713551	2717052	-	CDS,promoter,downstream
28	LOC_Os12g15980	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	9101375	9104610	-	CDS,promoter,downstream
28	LOC_Os07g31710	hypothetical protein	gene	hypothetical protein	chr7	18829963	18831098	+	CDS,promoter,downstream
28	LOC_Os11g43110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25543584	25545164	-	CDS,promoter,downstream
28	LOC_Os07g15510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8997600	9000326	-	CDS
28	LOC_Os10g10830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6007513	6013608	+	CDS,promoter,downstream
28	LOC_Os08g15890	hypothetical protein	gene	hypothetical protein	chr8	9675339	9676212	-	CDS,promoter,downstream
28	LOC_Os09g20950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12614901	12617086	-	CDS,promoter
28	LOC_Os07g14720	hypothetical protein	gene	hypothetical protein	chr7	8393125	8393810	+	CDS,promoter,downstream
28	LOC_Os07g15890	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9229311	9234692	-	CDS,downstream
28	LOC_Os01g21500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12009554	12010784	-	CDS,promoter,downstream
28	LOC_Os12g18930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10981873	10988317	+	CDS,downstream
28	LOC_Os05g19750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11522579	11528873	-	CDS,promoter,downstream
28	LOC_Os04g04480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2126428	2132798	-	CDS
28	LOC_Os12g14374	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8191468	8202380	+	CDS,promoter,downstream
28	LOC_Os08g12000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7040510	7045400	+	CDS,promoter
28	LOC_Os09g25360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15190325	15192507	+	CDS,promoter
28	LOC_Os03g28220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	16237296	16237932	-	CDS,promoter,downstream
28	LOC_Os01g53530	hypothetical protein	gene	hypothetical protein	chr1	30744394	30744827	+	CDS,promoter,downstream
28	LOC_Os04g10724	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5824082	5825152	+	CDS,promoter
28	LOC_Os12g06720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3267682	3270139	-	CDS
28	LOC_Os04g30310	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	17920121	17922127	-	CDS,promoter
28	LOC_Os12g27410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16130178	16135749	+	CDS,promoter
28	LOC_Os05g08270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4508716	4511362	+	CDS,promoter,downstream
28	LOC_Os07g30180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17824491	17828225	+	CDS
28	LOC_Os01g35750	unknown	gene	unknown	chr1	19804769	19805439	+	CDS,promoter,downstream
28	LOC_Os07g38350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	23041311	23043602	-	CDS,downstream
28	LOC_Os01g50090	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	28781739	28784852	-	three_prime_UTR,promoter
28	LOC_Os01g06360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	3015864	3020484	+	CDS,downstream
28	LOC_Os11g33020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	19051625	19054720	+	CDS,promoter,downstream
28	LOC_Os11g34490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19737714	19741421	-	CDS
28	LOC_Os09g18240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11193214	11199977	+	CDS
28	LOC_Os05g36400	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	21477229	21481966	-	CDS,promoter
28	LOC_Os09g21390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12915725	12918592	-	CDS
28	LOC_Os02g22360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13342290	13342925	-	CDS,promoter,downstream
28	LOC_Os09g03190	expressed protein	gene	expressed protein	chr9	1534348	1537149	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os01g58820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	33983975	33987712	-	CDS,promoter
28	LOC_Os08g43520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	27522212	27526434	-	CDS
28	LOC_Os11g18710	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	10593121	10595064	+	CDS,promoter
28	LOC_Os05g19250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	11181781	11186419	+	CDS,promoter,downstream
28	LOC_Os06g29280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16713281	16716479	-	CDS,promoter,downstream
28	LOC_Os07g39170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23462377	23467549	-	CDS,promoter,downstream
28	LOC_Os02g15040	hypothetical protein	gene	hypothetical protein	chr2	8390583	8392147	+	CDS,downstream
28	LOC_Os03g61870	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr3	35067979	35071183	-	CDS
28	LOC_Os04g06070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3146533	3153223	+	CDS
28	LOC_Os01g32230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17645872	17654781	+	CDS
28	LOC_Os12g17720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	10149235	10149653	+	CDS,promoter,downstream
28	LOC_Os06g17360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10063034	10064070	-	CDS,promoter,downstream
28	LOC_Os04g20450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11431743	11434073	+	CDS,promoter
28	LOC_Os08g27300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16669518	16672442	+	CDS,downstream
28	LOC_Os12g13070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7253980	7255812	+	CDS,promoter
28	LOC_Os07g18840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	11151370	11155342	+	CDS,promoter,downstream
28	LOC_Os06g27580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15607455	15610167	+	CDS,promoter
28	LOC_Os03g05970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2977742	2978014	-	CDS,promoter,downstream
28	LOC_Os05g15390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8707346	8708126	+	CDS,downstream
28	LOC_Os10g33490	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	17574916	17579395	-	CDS,downstream
28	LOC_Os04g04150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1914022	1920690	+	CDS,promoter
28	LOC_Os04g21690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12257153	12263073	-	CDS,downstream
28	LOC_Os07g18890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11190864	11196179	-	CDS,promoter,downstream
28	LOC_Os06g24610	hypothetical protein	gene	hypothetical protein	chr6	14444498	14445762	-	CDS,promoter,downstream
28	LOC_Os11g30270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17124335	17126896	-	CDS,promoter
28	LOC_Os04g05970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3084491	3088912	+	CDS,promoter,downstream
28	LOC_Os10g12816	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7188034	7189251	-	CDS,promoter,downstream
28	LOC_Os10g34860	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	18530116	18533475	-	CDS,downstream
28	LOC_Os11g20239	expressed protein	gene	expressed protein	chr11	11679736	11700109	-	CDS
28	LOC_Os03g26550	hypothetical protein	gene	hypothetical protein	chr3	15164108	15164828	+	CDS,downstream
28	LOC_Os07g39500	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	23667128	23669433	-	CDS,promoter
28	LOC_Os02g05230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2506007	2509046	-	CDS,promoter
28	LOC_Os10g24460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12476902	12482800	+	CDS,downstream
28	LOC_Os09g11150	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	6175333	6178600	+	CDS,downstream
28	LOC_Os11g26380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14638359	14644698	-	CDS,promoter
28	LOC_Os10g26830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14007634	14013337	-	CDS,promoter,downstream
28	LOC_Os09g14530	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr9	8593720	8596309	-	CDS,downstream
28	LOC_Os09g03390	hypothetical protein	gene	hypothetical protein	chr9	1668673	1669001	+	CDS,promoter
28	LOC_Os06g28140	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	15976245	15980223	-	CDS,promoter,downstream
28	LOC_Os11g18490	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	10420258	10420974	-	CDS,promoter,downstream
28	LOC_Os07g30750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18197189	18201740	+	CDS,promoter
28	LOC_Os11g33466	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19347122	19348339	+	CDS,promoter,downstream
28	LOC_Os12g21780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12247748	12253875	-	CDS,promoter
28	LOC_Os03g45580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25723100	25724377	+	CDS,promoter,downstream
28	LOC_Os08g05930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	3198426	3204074	-	CDS,promoter,downstream
28	LOC_Os12g22040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12405281	12406063	+	CDS,promoter,downstream
28	LOC_Os02g24155	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13992858	13993208	-	CDS,promoter,downstream
28	LOC_Os12g25830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14976024	14983193	-	CDS,promoter,downstream
28	LOC_Os07g18100	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	10709606	10711714	-	CDS,promoter
28	LOC_Os07g45110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	26924198	26927271	+	CDS,promoter
28	LOC_Os01g35310	hypothetical protein	gene	hypothetical protein	chr1	19541392	19543211	+	CDS
28	LOC_Os06g19790	hypothetical protein	gene	hypothetical protein	chr6	11302571	11303263	+	CDS
28	LOC_Os01g37325	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	20837792	20841912	-	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os10g18950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9577790	9578947	-	CDS,promoter,downstream
28	LOC_Os06g44630	hypothetical protein	gene	hypothetical protein	chr6	26951629	26952601	+	CDS,promoter
28	LOC_Os01g34730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19158276	19162434	+	CDS,promoter,downstream
28	LOC_Os04g30710	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	18185199	18186763	+	CDS,promoter,downstream
28	LOC_Os08g16100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9814074	9817406	-	CDS,promoter,downstream
28	LOC_Os08g12660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7484945	7485918	+	CDS,promoter,downstream
28	LOC_Os04g18500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10216802	10221214	+	CDS,downstream
28	LOC_Os02g30400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18099911	18102676	-	CDS,downstream
28	LOC_Os12g28200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16643491	16646412	-	CDS,promoter
28	LOC_Os01g25910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14698734	14701043	+	CDS,promoter
28	LOC_Os05g20230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11845199	11851920	-	CDS,promoter,downstream
28	LOC_Os10g15340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8061196	8064945	-	CDS,promoter,downstream
28	LOC_Os04g12410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6848274	6849749	+	CDS,promoter,downstream
28	LOC_Os11g34290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19618320	19628382	+	CDS,promoter
28	LOC_Os01g28360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	15881720	15884657	-	CDS,promoter
28	LOC_Os08g36360	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	22914997	22918329	-	CDS,downstream
28	LOC_Os12g37460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	22954954	22961109	-	CDS,downstream
28	LOC_Os06g03360	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	1281592	1282155	+	CDS
28	LOC_Os03g38620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21428771	21432504	+	CDS,promoter,downstream
28	LOC_Os02g15560	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr2	8732272	8737877	-	CDS
28	LOC_Os03g33290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19038364	19041611	-	CDS,downstream
28	LOC_Os06g36530	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr6	21460009	21462647	-	CDS,downstream
28	LOC_Os09g14820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8823402	8825932	-	CDS,downstream
28	LOC_Os06g14610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8221479	8223416	+	CDS,downstream
28	LOC_Os06g28820	cycloartenol synthase, putative	gene	cycloartenol synthase, putative	chr6	16399701	16431412	-	CDS,three_prime_UTR
28	LOC_Os12g26760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15677215	15680445	-	CDS,promoter,downstream
28	LOC_Os01g16820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	9573950	9577890	+	CDS,downstream
28	LOC_Os07g19594	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11603937	11611060	+	CDS,promoter,downstream
28	LOC_Os03g21050	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	11961231	11967501	+	CDS
28	LOC_Os02g27680	NB-ARC domain containing protein	gene	NB-ARC domain containing protein	chr2	16398585	16399403	+	CDS,downstream
28	LOC_Os06g23880	hypothetical protein	gene	hypothetical protein	chr6	13955962	13958296	+	CDS,promoter,downstream
28	LOC_Os06g32880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19124404	19127345	-	CDS
28	LOC_Os06g30080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17330906	17334106	-	CDS,promoter,downstream
28	LOC_Os09g09540	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	5149258	5153230	-	CDS,three_prime_UTR,promoter
28	LOC_Os07g24560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13983231	13986221	+	CDS,promoter,downstream
28	LOC_Os07g28500	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	16681756	16682627	+	CDS
28	LOC_Os02g42760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25712955	25714013	-	CDS,promoter,downstream
28	LOC_Os04g21640	hypothetical protein	gene	hypothetical protein	chr4	12228970	12232151	+	CDS,promoter
28	LOC_Os06g24760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14537250	14539242	+	CDS,downstream
28	LOC_Os04g29870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17630396	17637668	+	CDS
28	LOC_Os12g11150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5999530	6002049	-	CDS
28	LOC_Os06g34570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20105011	20111110	+	CDS,promoter,downstream
28	LOC_Os11g35650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20432016	20435248	-	CDS,promoter
28	LOC_Os01g16780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9532137	9535429	+	CDS,downstream
28	LOC_Os07g31630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18778332	18783482	+	CDS,downstream
28	LOC_Os09g36610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	21116954	21122562	+	CDS,promoter,downstream
28	LOC_Os06g36470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	21403279	21409326	+	CDS
28	LOC_Os03g26704	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15241837	15248579	-	CDS,promoter,downstream
28	LOC_Os07g28600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16736686	16740253	+	CDS,promoter
28	LOC_Os04g25330	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	14645181	14647930	+	CDS
28	LOC_Os01g37580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21009518	21021649	+	CDS,promoter
28	LOC_Os11g20430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11811860	11814924	-	CDS,downstream
28	LOC_Os07g34100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	20386871	20390608	+	CDS
28	LOC_Os10g23980	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	12217867	12219156	+	CDS,promoter,downstream
28	LOC_Os05g35390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	20960587	20966162	-	CDS
28	LOC_Os12g23530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13313846	13319168	+	CDS,promoter,downstream
28	LOC_Os12g12340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6780564	6788000	+	CDS,promoter,downstream
28	LOC_Os03g33790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19313075	19314820	+	CDS,promoter,downstream
28	LOC_Os10g08160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4418026	4419583	+	CDS,promoter
28	LOC_Os07g28760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16832285	16836446	+	CDS,promoter,downstream
28	LOC_Os05g08220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4474312	4476507	-	CDS,promoter,downstream
28	LOC_Os02g22040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13105122	13109885	-	CDS,promoter,downstream
28	LOC_Os12g22450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12670248	12672162	-	CDS,promoter,downstream
28	LOC_Os11g47444	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	28109178	28115270	-	CDS
28	LOC_Os06g18730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10616465	10619176	+	CDS,promoter
28	LOC_Os09g33750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	19932715	19937200	+	CDS,downstream
28	LOC_Os08g16770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	10251657	10254707	-	CDS,promoter,downstream
28	LOC_Os04g05040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	2444447	2446620	-	CDS
28	LOC_Os03g52950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30364830	30368144	-	CDS
28	LOC_Os02g16210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9210687	9214698	+	CDS,promoter,downstream
28	LOC_Os07g47920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28618973	28622734	-	CDS,promoter,downstream
28	LOC_Os01g54270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	31219277	31227522	-	CDS
28	LOC_Os03g23080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13340810	13345893	-	CDS,promoter,downstream
28	LOC_Os11g19600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11289580	11290371	+	CDS,promoter,downstream
28	LOC_Os07g23920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	13518321	13522148	+	CDS,promoter
28	LOC_Os10g17530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8770981	8772196	-	CDS,promoter,downstream
28	LOC_Os12g22190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12494375	12501455	+	CDS,promoter,downstream
28	LOC_Os05g15810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	8921893	8926224	+	CDS
28	LOC_Os01g35600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19702111	19704016	-	CDS,promoter,downstream
28	LOC_Os02g55830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	34172692	34174827	+	CDS
28	LOC_Os08g27674	LTPL130 - Protease inhibitor/seed storage/LTP family protein precursor, putative	gene	LTPL130 - Protease inhibitor/seed storage/LTP family protein precursor, putative	chr8	16860680	16866848	-	CDS,promoter
28	LOC_Os05g23210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	13182504	13192279	-	CDS,downstream
28	LOC_Os04g09270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4923856	4926772	+	CDS,promoter,downstream
28	LOC_Os03g28360	hypothetical protein	gene	hypothetical protein	chr3	16332890	16337241	-	CDS
28	LOC_Os11g16900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9367228	9370037	-	CDS,promoter,downstream
28	LOC_Os11g11170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6172379	6179183	-	CDS,promoter,downstream
28	LOC_Os03g33480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19126064	19126958	+	CDS,promoter,downstream
28	LOC_Os07g17660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10429445	10430801	-	CDS,promoter,downstream
28	LOC_Os12g12440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6845960	6847222	-	CDS,promoter,downstream
28	LOC_Os03g23840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13524819	13531538	-	CDS,promoter,downstream
28	LOC_Os08g18720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11172408	11173637	+	CDS,promoter,downstream
28	LOC_Os12g33730	hypothetical protein	gene	hypothetical protein	chr12	20327049	20328454	+	CDS,promoter
28	LOC_Os02g20900	hypothetical protein	gene	hypothetical protein	chr2	12353884	12354667	+	CDS,promoter,downstream
28	LOC_Os03g15160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	8279955	8286679	+	CDS,promoter,downstream
28	LOC_Os03g21100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	12011981	12015199	-	CDS
28	LOC_Os09g11339	unknown	gene	unknown	chr9	6295478	6295656	-	CDS,promoter,downstream
28	LOC_Os03g28950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	16415294	16416631	-	CDS,promoter,downstream
28	LOC_Os05g18010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10359598	10365876	+	CDS,promoter,downstream
28	LOC_Os06g20210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	11593078	11600631	+	CDS
28	LOC_Os04g02929	unknown	gene	unknown	chr4	1162515	1163456	-	CDS,promoter,downstream
28	LOC_Os12g30790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18456342	18459454	-	CDS,promoter
28	LOC_Os11g17890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10026663	10031658	+	CDS,downstream
28	LOC_Os01g34120	hypothetical protein	gene	hypothetical protein	chr1	18790685	18790990	+	CDS,promoter,downstream
28	LOC_Os01g32700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	17926643	17928659	+	CDS,promoter,downstream
28	LOC_Os10g20670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10377079	10380550	+	CDS,downstream
28	LOC_Os09g01750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	521523	524616	-	CDS,promoter,downstream
28	LOC_Os12g16840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9652890	9657515	-	CDS,promoter
28	LOC_Os12g10500	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5559581	5563927	-	CDS,promoter
28	LOC_Os07g24110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	13672368	13676182	-	CDS,downstream
28	LOC_Os03g14490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	7864240	7867275	+	CDS,promoter,downstream
28	LOC_Os05g32510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18936791	18938340	-	CDS,downstream
28	LOC_Os10g16650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8238051	8239479	-	CDS,downstream
28	LOC_Os01g69810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	40305948	40309027	+	CDS,promoter,downstream
28	LOC_Os04g01040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	30637	37300	+	CDS,promoter,downstream
28	LOC_Os12g24740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14190446	14192165	+	CDS,promoter,downstream
28	LOC_Os05g50880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29117396	29122020	+	CDS,promoter
28	LOC_Os08g10460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6144762	6150189	-	CDS,downstream
28	LOC_Os12g05570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2554166	2558875	+	CDS,promoter,downstream
28	LOC_Os02g47680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29140947	29143719	-	CDS,promoter,downstream
28	LOC_Os04g30990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	18338612	18344507	+	CDS
28	LOC_Os08g24450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14766045	14773703	+	CDS,downstream
28	LOC_Os03g05350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2618660	2623045	+	CDS,downstream
28	LOC_Os01g47980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27452189	27461582	-	CDS,downstream
28	LOC_Os11g29570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16686728	16692533	-	CDS,promoter,downstream
28	LOC_Os10g13930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7585280	7587011	-	CDS,downstream
28	LOC_Os04g21220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11952931	11958082	-	CDS,promoter,downstream
28	LOC_Os08g10790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6353991	6355170	+	CDS,promoter,downstream
28	LOC_Os05g06740	hypothetical protein	gene	hypothetical protein	chr5	3515581	3518421	-	CDS,promoter,downstream
28	LOC_Os01g63130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36579803	36580944	-	CDS,downstream
28	LOC_Os01g51650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29684397	29691115	-	CDS,downstream
28	LOC_Os09g11850	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr9	6642023	6645354	-	CDS
28	LOC_Os12g26620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15583498	15589071	-	CDS,promoter,downstream
28	LOC_Os05g20190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11820162	11821844	-	CDS,promoter
28	LOC_Os12g36260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	22174374	22178732	-	CDS,promoter,downstream
28	LOC_Os12g18830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10907479	10910121	+	CDS,downstream
28	LOC_Os06g29300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	16718985	16726542	-	CDS
28	LOC_Os07g24720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14059249	14061913	+	CDS,promoter,downstream
28	LOC_Os04g48780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	28914074	28916326	-	CDS
28	LOC_Os12g15290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8716403	8720024	+	CDS,promoter,downstream
28	LOC_Os09g14350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8475969	8478518	+	CDS,promoter,downstream
28	LOC_Os01g28740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16088538	16094094	-	CDS
28	LOC_Os05g03080	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	1204626	1213850	+	CDS,downstream
28	LOC_Os12g08400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4270171	4270719	-	CDS,promoter,downstream
28	LOC_Os04g07880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4196984	4198228	-	CDS,promoter,downstream
28	LOC_Os04g08772	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4774824	4776452	-	CDS,promoter,downstream
28	LOC_Os10g12140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	6765128	6769680	+	CDS
28	LOC_Os11g09120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	4851589	4854624	+	CDS
28	LOC_Os03g38190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21202594	21207273	+	CDS,downstream
28	LOC_Os04g02200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	754674	757586	+	CDS,promoter,downstream
28	LOC_Os05g30600	hypothetical protein	gene	hypothetical protein	chr5	17666262	17667105	+	CDS,downstream
28	LOC_Os06g01740	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	429838	433798	-	CDS,promoter,downstream
28	LOC_Os01g41480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	23481371	23484014	+	CDS,promoter
28	LOC_Os01g32010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17523017	17528889	-	CDS,promoter
28	LOC_Os06g03420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1309795	1311903	-	CDS,promoter,downstream
28	LOC_Os06g30570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	17684680	17688850	+	CDS,downstream
28	LOC_Os10g20070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	10004948	10007128	-	CDS,downstream
28	LOC_Os01g35070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19414834	19420285	-	CDS,promoter,downstream
28	LOC_Os12g17424	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9989310	9990749	-	CDS,promoter,downstream
28	LOC_Os11g25010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13779886	13783216	-	CDS,promoter
28	LOC_Os05g13710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7595426	7596715	+	CDS,downstream
28	LOC_Os05g29070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	17008721	17011365	-	CDS,promoter,downstream
28	LOC_Os09g01430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	324894	328341	+	CDS,promoter,downstream
28	LOC_Os01g35059	unknown	gene	unknown	chr1	19413163	19413559	-	CDS,promoter
28	LOC_Os09g08000	hypothetical protein	gene	hypothetical protein	chr9	4117718	4121487	-	CDS,downstream
28	LOC_Os12g10130	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5356646	5358682	-	CDS,promoter
28	LOC_Os08g09510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5508852	5514583	-	CDS,promoter,downstream
28	LOC_Os02g36480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22026396	22028380	+	CDS,promoter,downstream
28	LOC_Os06g16720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9644565	9646796	-	CDS,promoter
28	LOC_Os10g24060	hypothetical protein	gene	hypothetical protein	chr10	12253579	12254413	+	CDS,promoter
28	LOC_Os06g33759	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19642415	19643771	+	CDS,promoter,downstream
28	LOC_Os12g12800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7055193	7060697	-	CDS,promoter
28	LOC_Os02g28630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16936541	16940466	+	CDS,promoter,downstream
28	LOC_Os11g15140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	8529674	8531690	+	CDS,promoter,downstream
28	LOC_Os07g06770	expressed protein	gene	expressed protein	chr7	3305788	3307419	+	CDS,downstream
28	LOC_Os03g32820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18777798	18778721	+	CDS,promoter
28	LOC_Os10g06410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3290712	3295538	-	CDS,promoter,downstream
28	LOC_Os05g18030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10371922	10374637	-	CDS,promoter,downstream
28	LOC_Os01g39920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	22511175	22511975	+	CDS,promoter,downstream
28	LOC_Os08g12610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	7452149	7454320	+	CDS
28	LOC_Os08g26170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15917913	15919061	-	CDS,promoter,downstream
28	LOC_Os01g28550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	15982539	15985083	-	CDS,promoter,downstream
28	LOC_Os10g34120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	18136826	18141708	+	CDS
28	LOC_Os09g04240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2236300	2244121	+	CDS,promoter,downstream
28	LOC_Os08g08655	hypothetical protein	gene	hypothetical protein	chr8	5009883	5010954	-	CDS,promoter,downstream
28	LOC_Os06g26150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15295175	15301561	-	CDS,promoter,downstream
28	LOC_Os07g45710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27289319	27292043	-	CDS,promoter,downstream
28	LOC_Os07g05750	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr7	2764293	2769655	+	five_prime_UTR
28	LOC_Os07g28650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16769806	16771943	+	CDS
28	LOC_Os05g18480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10677440	10683100	-	CDS,promoter,downstream
28	LOC_Os06g31670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18402260	18406078	+	CDS,promoter,downstream
28	LOC_Os04g14840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8337191	8343807	-	CDS,promoter
28	LOC_Os07g02410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	825193	826749	+	CDS,downstream
28	LOC_Os06g16100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	9167798	9172169	-	CDS,promoter,downstream
28	LOC_Os06g17340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	10043686	10046991	-	CDS,promoter
28	LOC_Os06g27640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15642730	15644362	-	CDS,promoter,downstream
28	LOC_Os10g06340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3264207	3269033	+	CDS,promoter,downstream
28	LOC_Os08g20780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12472275	12474132	-	CDS,promoter,downstream
28	LOC_Os11g12690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7157219	7163374	+	CDS
28	LOC_Os04g03700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1629203	1632070	+	CDS
28	LOC_Os12g26240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15289571	15295725	+	CDS,promoter
28	LOC_Os05g20480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12019661	12023392	-	CDS,promoter,downstream
28	LOC_Os11g05210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	2295691	2302619	-	CDS,downstream
28	LOC_Os04g04109	unknown	gene	unknown	chr4	1890880	1891108	-	CDS,promoter,downstream
28	LOC_Os02g55230	carboxyl-terminal proteinase, putative	gene	carboxyl-terminal proteinase, putative	chr2	33818608	33822379	-	CDS,promoter
28	LOC_Os08g21780	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13038183	13040067	-	CDS,promoter
28	LOC_Os04g41660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	24515076	24517150	+	CDS,promoter,downstream
28	LOC_Os02g26510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15560201	15562653	-	CDS,promoter,downstream
28	LOC_Os10g13490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7302849	7309470	-	CDS,promoter,downstream
28	LOC_Os05g31330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18149333	18151183	-	CDS,promoter,downstream
28	LOC_Os07g24600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13996806	13997676	-	CDS,downstream
28	LOC_Os03g31640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18065910	18068826	+	CDS,downstream
28	LOC_Os11g37440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21642325	21646598	+	CDS,promoter
28	LOC_Os08g14010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8401877	8403722	-	CDS,promoter
28	LOC_Os11g36320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20919226	20922377	-	CDS,promoter
28	LOC_Os12g27690	hypothetical protein	gene	hypothetical protein	chr12	16327531	16329272	+	CDS,promoter,downstream
28	LOC_Os08g33780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21124340	21127333	+	CDS,promoter,downstream
28	LOC_Os07g23944	glycosyl hydrolase, family 31, putative, expressed	gene	glycosyl hydrolase, family 31, putative, expressed	chr7	13533778	13547814	+	CDS
28	LOC_Os01g46000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	26142689	26148393	+	CDS,promoter,downstream
28	LOC_Os09g14830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	8837492	8843647	+	CDS,promoter
28	LOC_Os10g09390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5079994	5081388	-	CDS,promoter,downstream
28	LOC_Os07g15080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8637701	8643690	-	CDS,promoter,downstream
28	LOC_Os10g03040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1257241	1262560	-	CDS,promoter,downstream
28	LOC_Os01g19720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11181518	11184411	-	CDS,promoter
28	LOC_Os08g25870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15756593	15759389	+	CDS,downstream
28	LOC_Os08g21450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	12783386	12783685	+	CDS,promoter,downstream
28	LOC_Os10g24910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12750539	12755280	+	CDS,promoter,downstream
28	LOC_Os01g21350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11929327	11930862	-	CDS,promoter,downstream
28	LOC_Os11g14790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8322032	8323919	+	CDS,downstream
28	LOC_Os05g18960	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	11002669	11003268	+	CDS,promoter,downstream
28	LOC_Os01g66090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	38351099	38357104	-	CDS,promoter,downstream
28	LOC_Os03g54804	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	31151324	31156733	-	CDS,downstream
28	LOC_Os07g25090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14324124	14330234	-	CDS
28	LOC_Os03g33810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19318868	19320550	-	CDS,promoter,downstream
28	LOC_Os01g22320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	12542348	12543737	+	CDS,downstream
28	LOC_Os05g04260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1939339	1942029	+	CDS,promoter
28	LOC_Os12g09480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4968810	4975422	+	CDS,promoter,downstream
28	LOC_Os03g05380	hypothetical protein	gene	hypothetical protein	chr3	2641282	2643853	+	CDS,downstream
28	LOC_Os07g29020	hypothetical protein	gene	hypothetical protein	chr7	17020093	17021647	+	CDS,downstream
28	LOC_Os11g23080	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	12816457	12819623	-	CDS,three_prime_UTR,downstream
28	LOC_Os05g20630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12101052	12105444	-	CDS,promoter,downstream
28	LOC_Os01g39930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	22512241	22516608	+	CDS,promoter,downstream
28	LOC_Os12g12080	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	6609704	6623598	+	CDS,three_prime_UTR,promoter
28	LOC_Os10g22030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11305959	11311562	-	CDS,promoter
28	LOC_Os08g05440	NB-ARC domain containing protein	gene	NB-ARC domain containing protein	chr8	2877956	2889637	+	CDS
28	LOC_Os02g40570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	24593903	24599860	+	CDS
28	LOC_Os03g31134	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	17725880	17733633	+	CDS,downstream
28	LOC_Os11g13920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7679125	7688633	-	CDS,promoter
28	LOC_Os11g40730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23889300	23894160	-	CDS
28	LOC_Os12g33490	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20204169	20205706	+	CDS,promoter,downstream
28	LOC_Os12g22180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12492216	12493454	-	CDS,promoter,downstream
28	LOC_Os05g27450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15903907	15911044	-	CDS,promoter,downstream
28	LOC_Os04g22440	hypothetical protein	gene	hypothetical protein	chr4	12698573	12699121	-	CDS,promoter
28	LOC_Os10g42590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	22881192	22882301	-	CDS,promoter
28	LOC_Os03g21360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	12212721	12217522	-	CDS,promoter,downstream
28	LOC_Os08g26010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	15821124	15825222	+	CDS,downstream
28	LOC_Os01g25130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14182315	14182725	-	CDS,promoter
28	LOC_Os10g18830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9514092	9517674	-	CDS
28	LOC_Os02g13910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	7558777	7568835	-	CDS
28	LOC_Os08g12400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7313026	7315950	-	CDS,promoter,downstream
28	LOC_Os04g54450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32209725	32214002	+	CDS
28	LOC_Os12g28020	hypothetical protein	gene	hypothetical protein	chr12	16525065	16527839	+	CDS,promoter
28	LOC_Os04g10130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5463298	5466169	-	CDS,promoter,downstream
28	LOC_Os12g38670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	23711117	23717035	-	CDS
28	LOC_Os02g32890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	19530487	19532073	-	CDS,promoter,downstream
28	LOC_Os01g22840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12830976	12834301	-	CDS,promoter,downstream
28	LOC_Os02g46200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	28141085	28145322	-	CDS
28	LOC_Os01g15720	tobamovirus movement protein containing protein	gene	tobamovirus movement protein containing protein	chr1	8839946	8845452	+	CDS,downstream
28	LOC_Os03g14410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7833473	7837775	+	CDS,downstream
28	LOC_Os09g10790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5887125	5889572	-	CDS,promoter,downstream
28	LOC_Os12g20110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11687039	11693043	+	CDS,promoter
28	LOC_Os05g17240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9862857	9865756	-	CDS,promoter,downstream
28	LOC_Os05g17720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10190943	10193638	-	CDS,promoter,downstream
28	LOC_Os10g22240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	11438720	11441673	+	CDS,promoter,downstream
28	LOC_Os12g30120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18013920	18019296	-	CDS
28	LOC_Os09g27130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	16496639	16497930	-	CDS,promoter,downstream
28	LOC_Os10g42364	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22732902	22738859	-	CDS,downstream
28	LOC_Os10g36720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	19584741	19588963	-	CDS,promoter
28	LOC_Os07g13020	SWIM zinc finger family protein, putative	gene	SWIM zinc finger family protein, putative	chr7	7468767	7472398	-	CDS,promoter
28	LOC_Os09g09020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4803997	4806684	-	CDS,promoter,downstream
28	LOC_Os04g02710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1029274	1035429	-	CDS
28	LOC_Os04g24700	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	14171396	14173870	+	CDS
28	LOC_Os08g07350	hypothetical protein	gene	hypothetical protein	chr8	4117004	4117381	-	CDS,downstream
28	LOC_Os05g14510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8205104	8212394	+	CDS,promoter,downstream
28	LOC_Os01g22930	hypothetical protein	gene	hypothetical protein	chr1	12889460	12890487	-	CDS,downstream
28	LOC_Os02g52980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	32405671	32408867	-	CDS,promoter
28	LOC_Os04g14090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7858233	7858805	-	CDS,promoter,downstream
28	LOC_Os03g33930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19364457	19365377	-	CDS,promoter,downstream
28	LOC_Os06g23700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	13844396	13849667	+	CDS,downstream
28	LOC_Os04g02100	hypothetical protein	gene	hypothetical protein	chr4	678549	679987	+	CDS,promoter
28	LOC_Os03g36470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20200130	20203060	+	CDS,promoter,downstream
28	LOC_Os12g19660	hypothetical protein	gene	hypothetical protein	chr12	11458191	11458852	-	CDS,promoter,downstream
28	LOC_Os12g22990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12993594	13000268	-	CDS,promoter
28	LOC_Os11g26110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14475795	14478787	+	CDS,promoter,downstream
28	LOC_Os08g24000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14516309	14518147	+	CDS,promoter,downstream
28	LOC_Os02g28440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16812806	16815993	-	CDS,promoter
28	LOC_Os02g38530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23292576	23292991	-	CDS,promoter,downstream
28	LOC_Os08g01010	hypothetical protein	gene	hypothetical protein	chr8	5563	7591	-	CDS,promoter
28	LOC_Os05g29100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17026507	17029569	+	CDS,promoter,downstream
28	LOC_Os05g48470	hypothetical protein	gene	hypothetical protein	chr5	27723245	27725706	-	CDS,downstream
28	LOC_Os04g19100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10597283	10600098	+	CDS,promoter,downstream
28	LOC_Os03g30450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	17363005	17371169	-	CDS,promoter,downstream
28	LOC_Os12g11580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6276737	6280060	+	CDS
28	LOC_Os09g14060	disease resistance protein RPS2, putative	gene	disease resistance protein RPS2, putative	chr9	8312344	8315031	-	CDS
28	LOC_Os04g14780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8288960	8291167	-	CDS,downstream
28	LOC_Os11g29960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16941726	16944824	-	CDS,promoter,downstream
28	LOC_Os10g04260	hypothetical protein	gene	hypothetical protein	chr10	1986164	1988163	-	CDS,promoter
28	LOC_Os02g50919	unknown	gene	unknown	chr2	31131901	31132058	+	CDS,promoter,downstream
28	LOC_Os04g07510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3992905	3997113	-	CDS,promoter,downstream
28	LOC_Os06g25800	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	15069034	15073246	-	CDS
28	LOC_Os07g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6458221	6465656	-	CDS
28	LOC_Os06g23230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	13558545	13565502	-	CDS,promoter
28	LOC_Os03g20690	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	11702352	11708389	-	CDS,promoter
28	LOC_Os05g41860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24449979	24452839	-	CDS,promoter,downstream
28	LOC_Os05g05000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2423878	2429976	+	CDS,downstream
28	LOC_Os01g24650	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	13876571	13877202	-	CDS,promoter
28	LOC_Os08g35350	hypothetical protein	gene	hypothetical protein	chr8	22289082	22289672	-	CDS,downstream
28	LOC_Os03g47840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27175698	27180542	+	CDS
28	LOC_Os10g23260	hypothetical protein	gene	hypothetical protein	chr10	12072887	12074020	+	CDS,downstream
28	LOC_Os05g38240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	22353965	22360012	-	CDS,promoter,downstream
28	LOC_Os11g32660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	18822051	18825493	+	CDS
28	LOC_Os05g36240	expressed protein	gene	expressed protein	chr5	21419564	21422586	+	CDS,promoter
28	LOC_Os02g37630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22702952	22707753	-	CDS,promoter
28	LOC_Os05g19460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11306134	11308479	-	CDS,promoter,downstream
28	LOC_Os02g14320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7857951	7861703	+	CDS,downstream
28	LOC_Os12g15650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8929226	8933644	+	CDS,promoter
28	LOC_Os06g42350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25448910	25452887	+	CDS
28	LOC_Os07g24130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13693825	13694566	+	CDS,promoter,downstream
28	LOC_Os02g50530	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	30848171	30851796	-	CDS
28	LOC_Os04g13550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	7556266	7561649	-	CDS,promoter
28	LOC_Os10g26370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13605238	13617651	+	CDS
28	LOC_Os05g13470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7472536	7475640	-	CDS,promoter,downstream
28	LOC_Os02g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14384864	14387458	-	CDS,downstream
28	LOC_Os10g08340	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	4529694	4531892	-	CDS,promoter,downstream
28	LOC_Os01g36360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20159882	20166259	+	CDS
28	LOC_Os06g48440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29301717	29311086	-	CDS,downstream
28	LOC_Os05g05420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2689991	2696374	-	CDS,downstream
28	LOC_Os12g22580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12741030	12743798	-	CDS,promoter,downstream
28	LOC_Os12g19150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11113099	11117409	+	CDS,promoter,downstream
28	LOC_Os07g40600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24328087	24329115	+	CDS,promoter,downstream
28	LOC_Os05g04460	OsWAK56 - OsWAK receptor-like protein kinase	gene	OsWAK56 - OsWAK receptor-like protein kinase	chr5	2053456	2057572	-	CDS,promoter
28	LOC_Os01g36710	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	20378372	20382323	-	CDS,promoter
28	LOC_Os07g37050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22199422	22201137	+	CDS,promoter
28	LOC_Os04g18050	hypothetical protein	gene	hypothetical protein	chr4	9961740	9962219	+	CDS,promoter,downstream
28	LOC_Os01g22750	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	12784514	12790669	-	CDS,downstream
28	LOC_Os08g04020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	1943276	1948451	-	CDS
28	LOC_Os07g12060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6731730	6738415	+	CDS,promoter,downstream
28	LOC_Os07g22960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12930686	12949090	-	CDS,downstream
28	LOC_Os01g28010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15662169	15663381	-	CDS,promoter,downstream
28	LOC_Os09g15220	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	9237164	9242848	+	CDS
28	LOC_Os05g32520	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	18938958	18941660	-	CDS,promoter,downstream
28	LOC_Os10g13470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7293009	7295756	+	CDS,promoter,downstream
28	LOC_Os02g27720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16413322	16417992	+	CDS
28	LOC_Os08g36260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22849798	22852836	-	CDS,promoter
28	LOC_Os05g15450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8731951	8732736	-	CDS,promoter,downstream
28	LOC_Os05g30260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	17476894	17479818	+	CDS,promoter,downstream
28	LOC_Os04g15870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8603175	8607895	-	CDS,promoter
28	LOC_Os04g19930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11104651	11105762	+	CDS,downstream
28	LOC_Os06g28500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16204106	16205627	+	CDS,promoter,downstream
28	LOC_Os08g28160	hypothetical protein	gene	hypothetical protein	chr8	17184570	17185904	+	CDS,promoter
28	LOC_Os01g31400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17168237	17171032	-	CDS,promoter,downstream
28	LOC_Os11g17990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10102651	10108332	-	CDS,promoter,downstream
28	LOC_Os07g28510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16683918	16689755	-	CDS,promoter,downstream
28	LOC_Os07g25210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14402883	14412413	-	CDS,promoter,downstream
28	LOC_Os09g04960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2662446	2668408	+	CDS
28	LOC_Os01g28620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16006901	16018723	-	CDS,downstream
28	LOC_Os02g40950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	24806724	24809466	-	CDS,promoter
28	LOC_Os02g12390	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	6454045	6458106	-	CDS
28	LOC_Os01g26930	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	14999455	15004007	-	CDS,promoter
28	LOC_Os12g06770	hypothetical protein	gene	hypothetical protein	chr12	3288021	3289480	+	CDS,promoter
28	LOC_Os02g38280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23141444	23144385	-	CDS,promoter,downstream
28	LOC_Os09g24420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	14518302	14524129	-	CDS,downstream
28	LOC_Os03g02370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	832443	835807	+	CDS,promoter
28	LOC_Os05g26260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15220034	15223711	-	CDS,promoter,downstream
28	LOC_Os03g46170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	26100895	26107474	-	CDS,promoter,downstream
28	LOC_Os04g24060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13730388	13736572	-	CDS,downstream
28	LOC_Os01g40460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	22845782	22848587	-	CDS,promoter,downstream
28	LOC_Os04g11360	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	6199568	6204457	+	CDS,downstream
28	LOC_Os08g12050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7090579	7094156	+	CDS,promoter
28	LOC_Os05g22750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12845075	12850061	+	CDS,promoter,downstream
28	LOC_Os09g10540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5747548	5753807	-	CDS,promoter,downstream
28	LOC_Os06g16080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9154331	9157857	-	CDS,downstream
28	LOC_Os02g01420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	249876	253000	-	CDS,downstream
28	LOC_Os04g47800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	28173863	28179759	+	CDS,downstream
28	LOC_Os09g26690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	16210598	16213613	-	CDS,promoter
28	LOC_Os06g49270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	29855654	29859637	+	CDS,downstream
28	LOC_Os12g13990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7947081	7953704	+	CDS,promoter,downstream
28	LOC_Os03g24270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	13814862	13821017	+	CDS,promoter
28	LOC_Os12g25020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14356070	14357726	+	CDS,promoter,downstream
28	LOC_Os09g06330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2969963	2972205	-	CDS,promoter,downstream
28	LOC_Os08g10390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6097381	6099821	+	CDS,promoter,downstream
28	LOC_Os08g05200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2709443	2710383	+	CDS,promoter,downstream
28	LOC_Os11g26640	hypothetical protein	gene	hypothetical protein	chr11	14797929	14798355	-	CDS,promoter,downstream
28	LOC_Os08g19760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11828768	11831180	+	CDS,promoter,downstream
28	LOC_Os06g23920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13974663	13977463	+	CDS,downstream
28	LOC_Os03g24410	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	13903426	13906014	+	CDS,downstream
28	LOC_Os04g13670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7625093	7626283	+	CDS,promoter,downstream
28	LOC_Os11g02900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	995579	997303	+	CDS,promoter,downstream
28	LOC_Os05g15750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8890702	8894737	+	CDS,promoter,downstream
28	LOC_Os07g13120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	7507404	7513853	+	CDS,promoter,downstream
28	LOC_Os12g31729	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	19066150	19070759	-	CDS
28	LOC_Os04g44640	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	gene	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	chr4	26227679	26238699	-	CDS,promoter
28	LOC_Os02g15240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	8508503	8515678	-	CDS
28	LOC_Os01g45490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25806337	25810764	-	CDS,promoter,downstream
28	LOC_Os08g13560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8054806	8057281	-	CDS,promoter,downstream
28	LOC_Os11g24760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13639044	13642049	+	CDS,downstream
28	LOC_Os12g33060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19948342	19958175	+	CDS,promoter
28	LOC_Os12g14460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8247715	8252280	-	CDS,promoter,downstream
28	LOC_Os11g15690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8885419	8889840	+	CDS,promoter,downstream
28	LOC_Os05g17530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10067266	10069277	+	CDS,promoter,downstream
28	LOC_Os10g10950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6071024	6075474	-	CDS,promoter
28	LOC_Os05g24630	hypothetical protein	gene	hypothetical protein	chr5	14173393	14175088	+	CDS,downstream
28	LOC_Os10g22230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11434657	11436044	-	CDS,promoter,downstream
28	LOC_Os01g15190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8514499	8517409	-	CDS,promoter,downstream
28	LOC_Os11g22600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12533617	12538279	-	CDS,promoter,downstream
28	LOC_Os09g37590	OsFBDUF47 - F-box and DUF domain containing protein, expressed	gene	OsFBDUF47 - F-box and DUF domain containing protein, expressed	chr9	21666226	21673416	+	CDS,promoter
28	LOC_Os01g60580	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	35023263	35024111	-	CDS,promoter
28	LOC_Os10g03240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	1365593	1370996	+	CDS,downstream
28	LOC_Os04g34260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	20577765	20582315	+	CDS,downstream
28	LOC_Os09g25110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	15030072	15033299	+	CDS
28	LOC_Os08g20590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	12365920	12368085	+	CDS,promoter
28	LOC_Os06g28100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15956624	15962781	-	CDS
28	LOC_Os08g03140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1439685	1440926	+	CDS,promoter,downstream
28	LOC_Os11g47445	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28118273	28121213	-	CDS
28	LOC_Os12g34490	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	20846109	20846582	-	CDS,promoter,downstream
28	LOC_Os08g40480	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr8	25605192	25606402	-	CDS,promoter
28	LOC_Os09g01050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	76340	81732	+	CDS,downstream
28	LOC_Os08g25750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15674096	15677167	-	CDS,downstream
28	LOC_Os02g36720	hypothetical protein	gene	hypothetical protein	chr2	22151324	22152489	-	CDS,promoter
28	LOC_Os11g15320	hypothetical protein	gene	hypothetical protein	chr11	8661361	8664377	-	CDS,promoter,downstream
28	LOC_Os12g09890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	5241074	5244683	-	CDS,downstream
28	LOC_Os03g51730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	29642080	29643966	+	CDS,promoter,downstream
28	LOC_Os02g37410	hypothetical protein	gene	hypothetical protein	chr2	22589499	22590909	+	CDS,downstream
28	LOC_Os12g16810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9633903	9636000	-	CDS,promoter,downstream
28	LOC_Os03g07050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3594222	3599116	-	CDS
28	LOC_Os04g13640	protein kinase domain containing protein	gene	protein kinase domain containing protein	chr4	7615586	7616657	-	CDS,downstream
28	LOC_Os07g47870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28595151	28598358	+	CDS,promoter,downstream
28	LOC_Os02g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11922454	11926516	+	CDS,promoter,downstream
28	LOC_Os03g31930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18256148	18258451	+	CDS
28	LOC_Os12g39150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	24043286	24049028	+	CDS,promoter
28	LOC_Os04g49300	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	29238822	29243376	+	CDS
28	LOC_Os04g16270	nucleic acid binding protein, putative	gene	nucleic acid binding protein, putative	chr4	8836189	8837787	-	CDS,promoter,downstream
28	LOC_Os08g14170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	8458974	8462780	-	CDS,promoter
28	LOC_Os01g24360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13725736	13731192	-	CDS,promoter,downstream
28	LOC_Os07g07130	hypothetical protein	gene	hypothetical protein	chr7	3513194	3524903	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g49850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28543283	28547545	+	CDS,downstream
28	LOC_Os12g29920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17854487	17856369	+	CDS,promoter,downstream
28	LOC_Os10g08660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4707251	4712596	-	CDS
28	LOC_Os01g09170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	4602847	4609002	-	CDS
28	LOC_Os04g02920	leucine-rich repeat family protein, putative, expressed	gene	leucine-rich repeat family protein, putative, expressed	chr4	1156196	1162418	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os11g18530	hypothetical protein	gene	hypothetical protein	chr11	10442629	10443105	-	CDS,promoter,downstream
28	LOC_Os01g06810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	3229885	3234268	-	CDS
28	LOC_Os08g32220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19970027	19971701	+	CDS,promoter,downstream
28	LOC_Os12g30340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18184458	18191811	+	CDS
28	LOC_Os01g12700	MYB family transcription factor, putative	gene	MYB family transcription factor, putative	chr1	7014131	7017379	+	CDS,downstream
28	LOC_Os11g13910	hypothetical protein	gene	hypothetical protein	chr11	7676151	7678041	+	CDS,downstream
28	LOC_Os02g23825	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13764898	13765542	-	CDS,promoter
28	LOC_Os08g11910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6976469	6980831	-	CDS,promoter,downstream
28	LOC_Os03g32550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18614412	18616712	+	CDS,promoter
28	LOC_Os05g23550	hypothetical protein	gene	hypothetical protein	chr5	13438001	13443317	-	CDS,promoter,downstream
28	LOC_Os11g12190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6789879	6792879	-	CDS,promoter,downstream
28	LOC_Os03g46440	BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed	gene	BTBA4 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed	chr3	26257756	26265292	-	three_prime_UTR,promoter
28	LOC_Os07g27014	unknown	gene	unknown	chr7	15648321	15651165	+	three_prime_UTR,downstream
28	LOC_Os11g24280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13367875	13370471	+	CDS,promoter,downstream
28	LOC_Os03g27640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15844272	15846198	+	CDS,promoter,downstream
28	LOC_Os05g05090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	2473079	2477487	+	CDS
28	LOC_Os03g35710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19775148	19779620	-	CDS,promoter
28	LOC_Os09g07140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3485176	3487666	+	CDS,promoter,downstream
28	LOC_Os06g20490	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	11774852	11776776	+	CDS,promoter,downstream
28	LOC_Os08g08180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4656307	4659018	+	CDS,promoter
28	LOC_Os11g20470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11847703	11853401	-	CDS,downstream
28	LOC_Os04g45420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26676356	26686775	-	CDS,downstream
28	LOC_Os12g01800	DNA cytosine methyltransferase Zmet3, putative	gene	DNA cytosine methyltransferase Zmet3, putative	chr12	482987	485738	+	CDS,downstream
28	LOC_Os05g35300	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	20898760	20900725	-	CDS,promoter
28	LOC_Os04g27590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	16147194	16148563	-	CDS,promoter,downstream
28	LOC_Os02g34550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	20702585	20709351	+	CDS,promoter,downstream
28	LOC_Os07g25240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14424497	14425901	-	CDS,promoter,downstream
28	LOC_Os01g10910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	5819255	5821506	+	CDS,downstream
28	LOC_Os12g14680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8402962	8404173	-	CDS,promoter,downstream
28	LOC_Os02g33370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	19822450	19825931	-	CDS,promoter,downstream
28	LOC_Os03g31970	hypothetical protein	gene	hypothetical protein	chr3	18283511	18283886	+	CDS,promoter,downstream
28	LOC_Os12g21920	hypothetical protein	gene	hypothetical protein	chr12	12341793	12342834	-	CDS,promoter,downstream
28	LOC_Os07g15610	hypothetical protein	gene	hypothetical protein	chr7	9046542	9047070	-	CDS,promoter,downstream
28	LOC_Os01g27900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15591850	15595367	-	CDS,promoter,downstream
28	LOC_Os04g24960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14372709	14378191	-	CDS,promoter,downstream
28	LOC_Os09g13180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7588615	7592973	-	CDS,promoter,downstream
28	LOC_Os02g19250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	11227974	11230703	+	CDS
28	LOC_Os02g45680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	27778351	27786356	+	CDS,downstream
28	LOC_Os07g26510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15274217	15278143	+	CDS
28	LOC_Os12g06420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3079841	3081532	-	CDS,promoter,downstream
28	LOC_Os04g19550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	10878726	10879130	-	CDS,promoter,downstream
28	LOC_Os02g24230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14036866	14041277	-	CDS,promoter,downstream
28	LOC_Os04g41670	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	24519531	24523159	+	CDS,promoter
28	LOC_Os04g31600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	18719682	18723368	+	CDS,promoter
28	LOC_Os04g04160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1925648	1934678	-	CDS,promoter,downstream
28	LOC_Os11g19360	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr11	11122944	11129556	+	CDS,promoter,downstream
28	LOC_Os01g46320	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	26347407	26350818	+	three_prime_UTR,promoter,downstream
28	LOC_Os06g18049	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10507966	10509399	+	CDS,promoter,downstream
28	LOC_Os08g28260	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	17244515	17246579	+	CDS,promoter,downstream
28	LOC_Os07g02310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	771821	773555	+	CDS,downstream
28	LOC_Os11g20200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11667436	11669741	+	CDS,promoter,downstream
28	LOC_Os11g31840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	18244305	18249971	+	CDS,promoter
28	LOC_Os11g29530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16669766	16675726	+	CDS
28	LOC_Os07g33160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19798404	19799489	+	CDS,promoter,downstream
28	LOC_Os01g25040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14121089	14126487	+	CDS
28	LOC_Os10g01984	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	613403	628437	-	CDS,promoter
28	LOC_Os09g05070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2725587	2730585	+	CDS,promoter
28	LOC_Os11g03010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	1044445	1048607	+	CDS,promoter,downstream
28	LOC_Os10g20660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10368376	10373552	+	CDS,promoter,downstream
28	LOC_Os03g24190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13750553	13758773	-	CDS,promoter,downstream
28	LOC_Os04g45400	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	26665807	26672473	-	CDS,promoter,downstream
28	LOC_Os12g22080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12417605	12420771	-	CDS,promoter,downstream
28	LOC_Os04g24730	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	14181686	14189419	+	CDS
28	LOC_Os07g15420	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr7	8914443	8917770	-	CDS,promoter,downstream
28	LOC_Os10g18560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9340938	9345474	-	CDS,promoter,downstream
28	LOC_Os05g07540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4034247	4040343	+	CDS,downstream
28	LOC_Os07g17300	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	10217284	10219739	-	CDS,promoter,downstream
28	LOC_Os10g13310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7197161	7199158	-	CDS,promoter,downstream
28	LOC_Os06g24570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14401930	14407552	+	CDS,promoter,downstream
28	LOC_Os06g20650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11896677	11899874	+	CDS,promoter,downstream
28	LOC_Os05g43730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25355158	25361114	+	CDS,promoter,downstream
28	LOC_Os08g04990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	2556340	2560199	+	CDS,downstream
28	LOC_Os08g37190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	23494981	23496213	-	CDS
28	LOC_Os03g14750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8019802	8022814	+	CDS,downstream
28	LOC_Os04g11240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6136642	6143208	+	CDS,promoter,downstream
28	LOC_Os08g25169	unknown	gene	unknown	chr8	15285498	15285913	-	CDS,promoter,downstream
28	LOC_Os04g23060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13086943	13091743	+	CDS
28	LOC_Os08g12140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7149586	7156807	-	CDS,promoter
28	LOC_Os04g42399	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	24897658	24904194	-	CDS
28	LOC_Os01g52430	hAT dimerisation domain-containing protein, putative, expressed	gene	hAT dimerisation domain-containing protein, putative, expressed	chr1	30123906	30127911	+	CDS
28	LOC_Os09g01270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	228595	235266	-	CDS,promoter,downstream
28	LOC_Os06g32010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18601538	18607335	+	CDS,promoter,downstream
28	LOC_Os12g15870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9041818	9044860	+	CDS,promoter,downstream
28	LOC_Os03g50670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	28924820	28933091	+	CDS,promoter
28	LOC_Os06g20280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11636291	11642315	-	CDS
28	LOC_Os12g12450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6849002	6854105	-	CDS,promoter,downstream
28	LOC_Os04g58290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	34515206	34516988	-	CDS,downstream
28	LOC_Os10g01900	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	573557	574748	-	CDS
28	LOC_Os03g57808	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	32932529	32934307	+	CDS,promoter,downstream
28	LOC_Os10g28310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14654591	14659426	+	CDS
28	LOC_Os05g27990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16278152	16281866	+	CDS,downstream
28	LOC_Os10g10680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	5915082	5919783	-	CDS,promoter,downstream
28	LOC_Os12g30810	hypothetical protein	gene	hypothetical protein	chr12	18479824	18480471	-	CDS,promoter
28	LOC_Os09g03350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1622243	1625137	+	CDS,promoter
28	LOC_Os08g40660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25742726	25747660	-	CDS,promoter
28	LOC_Os01g41516	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	23502808	23504601	-	CDS,promoter,downstream
28	LOC_Os04g18110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10002657	10004638	+	CDS,promoter,downstream
28	LOC_Os08g15570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9463007	9469102	+	CDS,promoter,downstream
28	LOC_Os02g26014	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr2	15257933	15277528	-	CDS,three_prime_UTR,promoter
28	LOC_Os02g19520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	11404342	11408426	-	CDS
28	LOC_Os01g64220	expressed protein	gene	expressed protein	chr1	37288446	37297328	-	CDS,promoter
28	LOC_Os01g31260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17092453	17095855	-	CDS,downstream
28	LOC_Os04g50172	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29748131	29752771	-	CDS
28	LOC_Os03g36170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20064149	20068539	+	CDS,promoter,downstream
28	LOC_Os01g18000	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	10070387	10075336	-	CDS,downstream
28	LOC_Os03g34180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19459874	19461662	+	CDS,promoter,downstream
28	LOC_Os09g01540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	385054	388015	-	CDS,promoter,downstream
28	LOC_Os02g27430	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr2	16154595	16155020	-	CDS,promoter,downstream
28	LOC_Os02g24910	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14433376	14434182	+	CDS,promoter,downstream
28	LOC_Os01g48160	hypothetical protein	gene	hypothetical protein	chr1	27576767	27577404	+	CDS,promoter,downstream
28	LOC_Os07g22920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12909086	12910877	-	CDS,promoter,downstream
28	LOC_Os02g24460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14167411	14168289	-	CDS,downstream
28	LOC_Os02g40230	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	24329174	24333114	-	CDS
28	LOC_Os08g15870	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	9647423	9651927	-	CDS,promoter
28	LOC_Os07g41110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24602250	24608239	+	CDS
28	LOC_Os09g07850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3982802	3992543	-	CDS,promoter
28	LOC_Os06g09580	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	4874079	4876893	-	CDS
28	LOC_Os01g24530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13827353	13829795	-	CDS,promoter,downstream
28	LOC_Os07g12410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7077073	7082760	+	CDS,promoter,downstream
28	LOC_Os06g21010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	12135752	12138201	-	CDS
28	LOC_Os11g35580	disease resistance protein RPM1, putative	gene	disease resistance protein RPM1, putative	chr11	20393742	20396764	-	CDS,promoter
28	LOC_Os06g21870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12631336	12631924	-	CDS,downstream
28	LOC_Os12g34730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21054393	21056983	+	CDS,promoter,downstream
28	LOC_Os02g29280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17387559	17392310	-	CDS,promoter,downstream
28	LOC_Os01g08480	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	4186493	4190715	-	CDS,promoter,downstream
28	LOC_Os12g33680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20302347	20303964	+	CDS,promoter,downstream
28	LOC_Os08g40360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	25548623	25554637	-	CDS,promoter
28	LOC_Os11g11330	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	6281517	6283741	-	three_prime_UTR,promoter
28	LOC_Os08g12210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7189779	7194329	+	CDS,promoter,downstream
28	LOC_Os11g30860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17495786	17498797	-	CDS,promoter,downstream
28	LOC_Os12g10090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5338918	5342704	-	CDS,promoter,downstream
28	LOC_Os09g35770	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr9	20575896	20578473	-	CDS,promoter
28	LOC_Os07g17370	hypothetical protein	gene	hypothetical protein	chr7	10256710	10257168	+	CDS,promoter,downstream
28	LOC_Os04g40450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23851530	23855945	-	CDS
28	LOC_Os10g01940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	593572	596378	+	CDS,downstream
28	LOC_Os07g26340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	15135712	15137507	+	CDS,promoter,downstream
28	LOC_Os11g30850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17494395	17495608	-	CDS,promoter,downstream
28	LOC_Os06g20660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11900212	11907284	-	CDS,promoter,downstream
28	LOC_Os04g05680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2897581	2900524	-	CDS,promoter,downstream
28	LOC_Os12g43230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26797053	26802366	-	CDS,promoter,downstream
28	LOC_Os10g24210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12333434	12334189	+	CDS,promoter,downstream
28	LOC_Os12g08520	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr12	4320513	4322774	+	CDS,promoter,downstream
28	LOC_Os02g26420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15510255	15513417	-	CDS,promoter,downstream
28	LOC_Os12g26870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15746214	15748981	-	CDS,promoter
28	LOC_Os09g13110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7547366	7560707	+	CDS,downstream
28	LOC_Os04g01200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	143203	145635	-	CDS,promoter
28	LOC_Os02g18330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	10647760	10653099	+	CDS
28	LOC_Os11g38310	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	22214202	22218463	-	CDS,promoter,downstream
28	LOC_Os03g22190	expressed protein	gene	expressed protein	chr3	12717675	12724973	-	CDS,downstream
28	LOC_Os05g06610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3411808	3416254	+	CDS,promoter,downstream
28	LOC_Os08g24490	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	14791249	14792751	-	CDS,promoter,downstream
28	LOC_Os11g32180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18535426	18542280	-	CDS
28	LOC_Os06g07850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	3812490	3818641	-	CDS,promoter,downstream
28	LOC_Os10g07150	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	3749155	3751599	-	CDS,three_prime_UTR,promoter
28	LOC_Os03g16540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	9119507	9122212	+	CDS,promoter,downstream
28	LOC_Os10g07584	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4157987	4160897	-	CDS,promoter,downstream
28	LOC_Os12g28560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16869655	16873008	+	CDS,downstream
28	LOC_Os06g21610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	12463880	12469800	-	CDS
28	LOC_Os02g53835	expressed protein	gene	expressed protein	chr2	32968784	32970087	-	three_prime_UTR,promoter
28	LOC_Os02g16130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9179882	9180694	-	CDS,promoter,downstream
28	LOC_Os03g40510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	22517595	22520690	-	CDS,promoter
28	LOC_Os12g43240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26802638	26806974	-	CDS,promoter,downstream
28	LOC_Os02g05160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2464959	2468282	+	CDS,promoter,downstream
28	LOC_Os10g08990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	4877316	4880611	-	CDS
28	LOC_Os06g13500	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	7438413	7442219	-	CDS,promoter
28	LOC_Os03g20810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	11784344	11787633	+	CDS,downstream
28	LOC_Os08g16180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9860878	9866288	-	CDS,promoter,downstream
28	LOC_Os11g12850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	7283625	7286723	+	CDS,downstream
28	LOC_Os12g35650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21640362	21645078	-	CDS,downstream
28	LOC_Os07g02050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	626848	627308	-	CDS,promoter
28	LOC_Os03g26329	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15044711	15055564	+	CDS,downstream
28	LOC_Os03g54030	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr3	30966336	30970903	-	three_prime_UTR,promoter
28	LOC_Os12g17650	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	10104467	10107084	+	CDS,promoter,downstream
28	LOC_Os09g10390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5683077	5685877	+	CDS,promoter,downstream
28	LOC_Os11g36870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21279927	21285175	+	CDS
28	LOC_Os02g38360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	23185240	23188680	-	CDS
28	LOC_Os02g15070	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	8401194	8403227	-	CDS
28	LOC_Os06g39400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23381208	23387390	-	CDS
28	LOC_Os11g14350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8052817	8056197	+	CDS,promoter
28	LOC_Os07g27700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16158646	16161467	-	CDS,promoter,downstream
28	LOC_Os12g19480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11324158	11330239	+	CDS,promoter
28	LOC_Os08g11320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6654977	6656448	+	CDS,promoter,downstream
28	LOC_Os05g16340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9253102	9254529	+	CDS,promoter
28	LOC_Os11g28150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15714639	15720054	-	CDS,promoter
28	LOC_Os01g35254	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	19515711	19521445	-	CDS,downstream
28	LOC_Os07g13430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7700999	7705489	+	CDS,promoter,downstream
28	LOC_Os06g50260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	30423968	30426909	+	CDS,promoter,downstream
28	LOC_Os11g27160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	15160458	15161945	-	CDS,promoter,downstream
28	LOC_Os09g10149	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5519849	5520929	+	CDS,promoter,downstream
28	LOC_Os07g35040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20991206	20997102	+	CDS
28	LOC_Os04g16700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9080337	9082188	-	CDS,promoter,downstream
28	LOC_Os12g24120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13720729	13723763	+	CDS,promoter
28	LOC_Os08g32240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19973621	19975814	-	CDS,promoter,downstream
28	LOC_Os11g30740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17430543	17434096	+	CDS,promoter
28	LOC_Os05g13750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7619961	7622821	-	CDS,promoter
28	LOC_Os01g24410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13760830	13762134	+	CDS,promoter,downstream
28	LOC_Os08g25760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15677936	15680391	-	CDS,promoter
28	LOC_Os01g42560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	24198195	24199367	+	CDS,promoter,downstream
28	LOC_Os08g05360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	2821436	2829066	+	CDS,promoter
28	LOC_Os11g20420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11808739	11811247	+	CDS,promoter,downstream
28	LOC_Os02g15420	hypothetical protein	gene	hypothetical protein	chr2	8626224	8628544	-	CDS
28	LOC_Os06g24596	expressed protein	gene	expressed protein	chr6	14431774	14435909	-	three_prime_UTR,downstream
28	LOC_Os11g28050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15659961	15663555	+	CDS,promoter
28	LOC_Os08g39760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25170086	25177797	-	CDS,promoter,downstream
28	LOC_Os09g39290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22579232	22585387	+	CDS
28	LOC_Os01g37900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21218509	21221309	-	CDS,promoter
28	LOC_Os05g46640	hypothetical protein	gene	hypothetical protein	chr5	26936993	26937978	+	CDS,downstream
28	LOC_Os05g41040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23988373	23991799	+	CDS
28	LOC_Os04g07440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	3946613	3947772	+	CDS,promoter,downstream
28	LOC_Os06g14130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	7879382	7882327	+	CDS,promoter,downstream
28	LOC_Os06g35120	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr6	20431372	20434732	+	CDS,promoter
28	LOC_Os12g31700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	19053506	19057451	-	CDS
28	LOC_Os01g31150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17034790	17036190	+	CDS,promoter,downstream
28	LOC_Os11g21850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12083139	12088543	-	CDS,promoter
28	LOC_Os08g38190	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	24194981	24199009	+	CDS,promoter,downstream
28	LOC_Os06g29050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	16550847	16557124	+	CDS,promoter,downstream
28	LOC_Os01g43930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25172651	25175977	+	CDS,promoter,downstream
28	LOC_Os01g64600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	37489688	37495842	+	CDS,promoter
28	LOC_Os06g35000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	20348848	20352342	+	CDS
28	LOC_Os01g02220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	663777	666554	-	CDS,promoter
28	LOC_Os12g28610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16916313	16916978	+	CDS
28	LOC_Os05g32290	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	18760618	18766281	-	CDS,promoter
28	LOC_Os04g14930	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8391034	8393037	-	CDS,promoter
28	LOC_Os12g36500	hypothetical protein	gene	hypothetical protein	chr12	22304569	22305492	-	CDS,promoter,downstream
28	LOC_Os06g17510	hypothetical protein	gene	hypothetical protein	chr6	10154244	10155769	-	CDS,promoter,downstream
28	LOC_Os04g13090	vignain precursor, putative	gene	vignain precursor, putative	chr4	7216596	7217710	-	CDS,promoter
28	LOC_Os09g16600	hypothetical protein	gene	hypothetical protein	chr9	10188250	10190753	-	CDS,promoter,downstream
28	LOC_Os08g35810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22578877	22585079	-	CDS
28	LOC_Os06g47990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	29012149	29018046	+	CDS
28	LOC_Os06g29410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	16838620	16841708	-	CDS,promoter,downstream
28	LOC_Os06g25410	hypothetical protein	gene	hypothetical protein	chr6	14875516	14875875	-	CDS,promoter,downstream
28	LOC_Os08g34810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	21886715	21892769	-	CDS,promoter,downstream
28	LOC_Os12g17630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10095667	10098355	-	CDS,promoter,downstream
28	LOC_Os12g31650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	19035369	19038769	-	CDS,promoter
28	LOC_Os07g34500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20673459	20676553	+	CDS
28	LOC_Os09g09710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5250641	5256235	-	CDS,promoter,downstream
28	LOC_Os04g21200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11935508	11942227	+	CDS,promoter,downstream
28	LOC_Os04g56380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	33429827	33436290	+	CDS
28	LOC_Os06g37260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21999278	22001859	-	CDS,downstream
28	LOC_Os11g22870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12688869	12692000	-	CDS,promoter,downstream
28	LOC_Os12g16900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9687786	9692270	+	CDS,promoter,downstream
28	LOC_Os03g48990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	27892252	27900499	-	CDS,promoter,downstream
28	LOC_Os08g12860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7625206	7627058	+	CDS,downstream
28	LOC_Os06g43150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25935098	25940004	+	CDS
28	LOC_Os08g13760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8200534	8203474	-	CDS,promoter,downstream
28	LOC_Os12g35430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	21509799	21512827	+	CDS,promoter
28	LOC_Os01g34290	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	18898189	18905152	+	CDS,promoter,downstream
28	LOC_Os01g36420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20213440	20216768	-	CDS,downstream
28	LOC_Os03g62350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35319629	35321221	+	CDS,downstream
28	LOC_Os12g34590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20930581	20935054	+	CDS,promoter,downstream
28	LOC_Os09g28450	paramyosin, putative, expressed	gene	paramyosin, putative, expressed	chr9	17308965	17311559	+	CDS
28	LOC_Os04g19830	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	11059548	11060549	-	CDS,promoter,downstream
28	LOC_Os02g27090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	15915593	15916777	-	CDS,promoter,downstream
28	LOC_Os12g22380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12633093	12638610	-	CDS,promoter,downstream
28	LOC_Os12g28950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17113699	17115834	-	CDS,promoter,downstream
28	LOC_Os06g35600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	20771755	20774043	+	CDS,promoter,downstream
28	LOC_Os11g08620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	4582384	4585255	+	CDS,promoter,downstream
28	LOC_Os08g20982	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12560086	12560653	-	CDS,promoter
28	LOC_Os08g44160	hypothetical protein	gene	hypothetical protein	chr8	27794856	27800038	-	CDS,downstream
28	LOC_Os04g08780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	4780797	4784738	+	CDS,promoter,downstream
28	LOC_Os12g16430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9405236	9409253	-	CDS,downstream
28	LOC_Os01g17090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9827190	9827531	-	CDS,promoter,downstream
28	LOC_Os12g30430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18226636	18227118	+	CDS,downstream
28	LOC_Os02g27630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16368113	16371033	+	CDS,promoter,downstream
28	LOC_Os10g24700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12623344	12630200	+	CDS,promoter,downstream
28	LOC_Os08g34830	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr8	21909582	21912040	-	CDS
28	LOC_Os01g63080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36547238	36555148	-	CDS,promoter
28	LOC_Os04g55020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32527897	32533856	+	CDS,downstream
28	LOC_Os11g32850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	18939144	18943736	+	CDS,promoter,downstream
28	LOC_Os06g22220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12889324	12892490	+	CDS,promoter,downstream
28	LOC_Os03g42690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	23772264	23776358	+	CDS
28	LOC_Os12g33700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20314838	20317749	+	CDS,promoter,downstream
28	LOC_Os03g36310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20136567	20140097	+	CDS,promoter,downstream
28	LOC_Os08g17940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11002406	11005482	-	CDS,promoter,downstream
28	LOC_Os05g44010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25539062	25542005	-	CDS,promoter,downstream
28	LOC_Os02g36100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	21716410	21723477	+	CDS,promoter
28	LOC_Os09g03290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1578920	1581614	+	CDS,promoter,downstream
28	LOC_Os05g18690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10826613	10827749	+	CDS,promoter,downstream
28	LOC_Os02g54410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	33334661	33339617	-	CDS,promoter
28	LOC_Os12g22020	hypothetical protein	gene	hypothetical protein	chr12	12380541	12386677	+	CDS,downstream
28	LOC_Os03g47110	hypothetical protein	gene	hypothetical protein	chr3	26639626	26641867	+	CDS,downstream
28	LOC_Os03g44370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	24940105	24946696	-	CDS,promoter
28	LOC_Os04g26290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15313060	15318226	-	CDS,downstream
28	LOC_Os05g16410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	9310573	9313741	-	CDS
28	LOC_Os05g16450	hypothetical protein	gene	hypothetical protein	chr5	9340867	9341337	+	CDS,promoter,downstream
28	LOC_Os06g25720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	15019223	15020026	-	CDS,promoter
28	LOC_Os12g08080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	4109141	4112917	-	CDS,downstream
28	LOC_Os09g13340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7692090	7695244	-	CDS,promoter
28	LOC_Os01g71840	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	41604648	41620079	+	CDS,downstream
28	LOC_Os01g01290	histone-like transcription factor and archaeal histone, putative, expressed	gene	histone-like transcription factor and archaeal histone, putative, expressed	chr1	138820	140588	+	five_prime_UTR,CDS,promoter
28	LOC_Os12g23650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13421735	13422592	-	CDS,promoter
28	LOC_Os04g22280	hypothetical protein	gene	hypothetical protein	chr4	12604006	12604233	+	CDS,downstream
28	LOC_Os01g27950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15628820	15630006	+	CDS,promoter
28	LOC_Os02g44790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	27121097	27124453	+	CDS
28	LOC_Os06g19890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	11367536	11370862	-	CDS
28	LOC_Os11g22570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12514730	12520680	-	CDS
28	LOC_Os10g10450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5755931	5759798	-	CDS,promoter
28	LOC_Os03g36350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20155524	20157394	-	CDS,promoter,downstream
28	LOC_Os07g15050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8625622	8627910	-	CDS,downstream
28	LOC_Os07g27070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15682108	15690068	+	CDS
28	LOC_Os07g42150	transcription initiation factor IID, putative	gene	transcription initiation factor IID, putative	chr7	25218515	25222059	-	CDS,promoter
28	LOC_Os10g24920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12756832	12761179	-	CDS,promoter,downstream
28	LOC_Os02g56650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34724875	34726653	+	CDS,downstream
28	LOC_Os12g24210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13792394	13796212	-	CDS,downstream
28	LOC_Os11g14720	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	8292323	8293768	+	CDS,promoter
28	LOC_Os05g24980	hypothetical protein	gene	hypothetical protein	chr5	14401694	14402848	+	CDS,downstream
28	LOC_Os07g17290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10210518	10212653	-	CDS,promoter,downstream
28	LOC_Os03g29212	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	16605849	16608986	+	CDS,promoter,downstream
28	LOC_Os08g44124	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27779414	27783659	-	CDS,downstream
28	LOC_Os04g05310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2637579	2641906	-	CDS,downstream
28	LOC_Os01g28882	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16183334	16191425	-	CDS,promoter,downstream
28	LOC_Os08g29550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18113908	18115631	-	CDS
28	LOC_Os07g17080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10045935	10047149	-	CDS,promoter,downstream
28	LOC_Os06g38420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22757549	22763659	-	CDS,promoter,downstream
28	LOC_Os03g29560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16844580	16851682	-	CDS,promoter
28	LOC_Os05g27650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16035850	16045851	-	CDS
28	LOC_Os09g06150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2877900	2884422	-	CDS,promoter,downstream
28	LOC_Os12g28400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16783623	16786924	-	CDS,promoter
28	LOC_Os11g17170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9533453	9541579	+	CDS,promoter,downstream
28	LOC_Os04g25280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14599497	14605187	+	CDS
28	LOC_Os10g21070	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	10595737	10604788	+	CDS
28	LOC_Os06g18760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10630988	10637722	-	CDS
28	LOC_Os05g10390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5661735	5665016	+	CDS,downstream
28	LOC_Os06g21280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12301241	12304583	+	CDS
28	LOC_Os12g33910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20406477	20416765	-	CDS,downstream
28	LOC_Os11g07800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	3975434	3981111	-	CDS,promoter,downstream
28	LOC_Os01g37230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20793237	20796162	+	CDS,promoter,downstream
28	LOC_Os06g34510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	20080452	20083772	-	CDS,promoter
28	LOC_Os03g23880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13552496	13553053	-	CDS,promoter,downstream
28	LOC_Os11g19350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11113509	11120220	-	CDS,downstream
28	LOC_Os05g18500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10693984	10697895	-	CDS,promoter,downstream
28	LOC_Os04g02840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1099983	1103219	-	CDS,promoter
28	LOC_Os04g05260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2613974	2615540	-	CDS,promoter,downstream
28	LOC_Os07g16440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9629558	9631020	+	CDS,promoter,downstream
28	LOC_Os06g34820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	20235821	20241561	-	CDS
28	LOC_Os05g08130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4429533	4432454	+	CDS,promoter,downstream
28	LOC_Os03g33680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19259817	19265696	+	CDS
28	LOC_Os03g62460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	35366765	35369803	+	CDS,promoter
28	LOC_Os05g22760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12853644	12856054	-	CDS,promoter,downstream
28	LOC_Os04g18860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10481576	10484501	-	CDS,promoter,downstream
28	LOC_Os09g04970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2672952	2676041	+	CDS,promoter,downstream
28	LOC_Os10g37810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	20163862	20167618	+	CDS,downstream
28	LOC_Os02g26050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	15285173	15288391	+	CDS,promoter,downstream
28	LOC_Os06g13630	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr6	7544994	7548258	-	CDS,promoter
28	LOC_Os12g13190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7347556	7348170	-	CDS,promoter,downstream
28	LOC_Os07g09350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	4926756	4928936	-	CDS,downstream
28	LOC_Os02g38630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23340907	23345328	-	CDS,promoter,downstream
28	LOC_Os11g27840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15560118	15561930	+	CDS,promoter,downstream
28	LOC_Os09g06170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2891827	2893504	-	CDS,promoter
28	LOC_Os12g25580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14797349	14801893	-	CDS,promoter,downstream
28	LOC_Os04g06470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3361696	3366157	+	CDS,promoter,downstream
28	LOC_Os07g05770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	2772802	2780213	-	CDS,promoter,downstream
28	LOC_Os06g21130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12206466	12207848	-	CDS,promoter
28	LOC_Os02g58430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	35726314	35731898	-	CDS,downstream
28	LOC_Os12g43910	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	27223677	27224906	+	CDS,promoter
28	LOC_Os04g20840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11685944	11688521	+	CDS,promoter,downstream
28	LOC_Os09g22330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13491389	13493868	-	CDS,downstream
28	LOC_Os01g38170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21375479	21378968	+	CDS
28	LOC_Os07g37900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22737114	22745363	+	CDS,promoter,downstream
28	LOC_Os11g26020	hypothetical protein	gene	hypothetical protein	chr11	14416898	14417870	+	CDS,promoter,downstream
28	LOC_Os05g33740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	19814245	19815004	-	CDS,promoter,downstream
28	LOC_Os03g21330	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	12202743	12204806	-	CDS,promoter,downstream
28	LOC_Os05g13740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7612255	7616102	+	CDS,promoter,downstream
28	LOC_Os08g36670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	23134854	23142124	-	CDS
28	LOC_Os02g24660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14299836	14300964	-	CDS,promoter,downstream
28	LOC_Os01g64200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	37280128	37284286	+	CDS,promoter,downstream
28	LOC_Os08g12300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7242766	7250956	+	CDS,promoter
28	LOC_Os06g25140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14707591	14709378	+	CDS,promoter,downstream
28	LOC_Os06g25180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14731413	14736126	-	CDS,downstream
28	LOC_Os12g13880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7863668	7869370	-	CDS,downstream
28	LOC_Os11g27700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15473092	15475277	-	CDS,downstream
28	LOC_Os11g39510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23056341	23064434	+	CDS,promoter,downstream
28	LOC_Os07g17630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10413395	10417601	+	CDS,promoter,downstream
28	LOC_Os04g02220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	760841	763140	-	CDS,promoter,downstream
28	LOC_Os12g25600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14814395	14817138	-	CDS,promoter,downstream
28	LOC_Os06g21970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12701745	12703363	-	CDS,promoter,downstream
28	LOC_Os04g03470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1494484	1499736	+	CDS
28	LOC_Os02g28640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16941982	16942443	+	CDS,promoter,downstream
28	LOC_Os12g30980	hypothetical protein	gene	hypothetical protein	chr12	18578968	18583737	-	CDS
28	LOC_Os07g15780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9159847	9163574	-	CDS,promoter
28	LOC_Os01g32030	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17533850	17535872	+	CDS,promoter,downstream
28	LOC_Os11g34050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	19438013	19441270	+	CDS,downstream
28	LOC_Os12g30260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18124714	18126857	-	CDS,promoter
28	LOC_Os06g28300	zinc knuckle family protein, expressed	gene	zinc knuckle family protein, expressed	chr6	16069800	16071707	-	CDS,promoter,downstream
28	LOC_Os05g30070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17333957	17339386	-	CDS
28	LOC_Os08g11190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6572880	6575646	+	CDS,downstream
28	LOC_Os07g11860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6560626	6566331	-	CDS,promoter,downstream
28	LOC_Os08g15290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9298005	9300543	+	CDS,promoter
28	LOC_Os06g25670	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	14994186	15003157	-	CDS,promoter
28	LOC_Os01g33700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18547832	18553659	-	CDS,promoter
28	LOC_Os12g07000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	3426729	3427016	-	CDS,promoter,downstream
28	LOC_Os10g24980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12786743	12789190	+	CDS,downstream
28	LOC_Os10g14210	hypothetical protein	gene	hypothetical protein	chr10	7720977	7721575	-	CDS,promoter,downstream
28	LOC_Os05g24350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14025414	14027315	-	CDS,promoter
28	LOC_Os04g05270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2617773	2620875	-	CDS,promoter,downstream
28	LOC_Os08g12460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7368926	7370492	+	CDS,promoter,downstream
28	LOC_Os10g08696	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4732203	4734221	+	CDS,promoter,downstream
28	LOC_Os05g16710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9500711	9502911	+	CDS,downstream
28	LOC_Os09g02070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	755861	761901	+	CDS,downstream
28	LOC_Os10g11330	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	6300325	6302505	-	CDS,downstream
28	LOC_Os11g31970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	18331164	18334987	-	CDS,promoter
28	LOC_Os04g02210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	757906	758685	-	CDS,promoter,downstream
28	LOC_Os04g42730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	25102525	25108196	+	CDS,downstream
28	LOC_Os02g15990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	9075212	9079453	+	CDS,promoter,downstream
28	LOC_Os12g03304	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	1275104	1279591	+	CDS,downstream
28	LOC_Os06g49590	hypothetical protein	gene	hypothetical protein	chr6	30022181	30022393	+	CDS,promoter,downstream
28	LOC_Os04g12320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6796567	6802759	-	CDS,downstream
28	LOC_Os08g33250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20713338	20716230	-	CDS,promoter,downstream
28	LOC_Os07g20520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11856721	11857798	+	CDS,downstream
28	LOC_Os02g23860	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13809053	13810425	-	CDS,promoter,downstream
28	LOC_Os08g22130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13346121	13348626	-	CDS,downstream
28	LOC_Os07g09760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5194697	5199919	+	CDS,downstream
28	LOC_Os06g02740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	989762	992282	+	CDS,promoter,downstream
28	LOC_Os10g07622	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4248754	4250605	-	CDS,promoter,downstream
28	LOC_Os09g26680	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr9	16202470	16210066	+	CDS,promoter,downstream
28	LOC_Os04g21380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12075493	12078360	+	CDS,promoter,downstream
28	LOC_Os04g19910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11091968	11094876	-	CDS,promoter
28	LOC_Os09g08790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4635402	4638983	+	CDS,promoter
28	LOC_Os02g46630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	28450686	28457238	+	CDS,downstream
28	LOC_Os01g71900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	41659384	41661810	+	CDS,promoter,downstream
28	LOC_Os12g38690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	23727707	23729023	-	CDS,promoter,downstream
28	LOC_Os07g13860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7933129	7936709	-	CDS,promoter
28	LOC_Os05g48530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	27749590	27752571	-	CDS,downstream
28	LOC_Os07g44390	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	26520942	26525166	-	CDS,promoter
28	LOC_Os06g23630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13775316	13778227	-	CDS,promoter
28	LOC_Os10g06080	hypothetical protein	gene	hypothetical protein	chr10	3083541	3084475	-	CDS,promoter
28	LOC_Os06g22210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	12884508	12885812	-	CDS,promoter,downstream
28	LOC_Os02g18270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10595400	10596759	-	CDS,promoter
28	LOC_Os12g19670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11460310	11461970	-	CDS,promoter,downstream
28	LOC_Os07g24340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	13843623	13848464	+	CDS,downstream
28	LOC_Os10g16900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8363683	8369379	-	CDS,promoter,downstream
28	LOC_Os11g35520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20356185	20360217	+	CDS,promoter,downstream
28	LOC_Os01g33260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18318910	18336471	-	CDS,promoter
28	LOC_Os01g23180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13025698	13028227	-	CDS,promoter,downstream
28	LOC_Os02g34660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	20785698	20788668	+	CDS,promoter,downstream
28	LOC_Os11g23750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12961797	12968226	+	CDS,downstream
28	LOC_Os11g27830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15555009	15557042	-	CDS,promoter,downstream
28	LOC_Os05g27600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16003546	16006032	+	CDS,downstream
28	LOC_Os02g14560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8027852	8031438	-	CDS,promoter,downstream
28	LOC_Os07g37670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22581960	22586824	+	CDS,promoter,downstream
28	LOC_Os03g31060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17694343	17698336	+	CDS,promoter
28	LOC_Os12g04910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2107523	2112084	+	CDS,promoter,downstream
28	LOC_Os10g37820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	20169978	20173582	+	CDS,promoter
28	LOC_Os08g19450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11616777	11620832	+	CDS,promoter,downstream
28	LOC_Os08g21360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12734424	12742349	+	CDS,promoter,downstream
28	LOC_Os10g32290	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr10	16874079	16876828	+	CDS
28	LOC_Os01g73320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	42496811	42502769	+	CDS
28	LOC_Os09g19470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11654238	11654534	-	CDS,promoter,downstream
28	LOC_Os02g26490	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	15552665	15555486	+	CDS,downstream
28	LOC_Os01g45030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25554110	25561625	+	CDS,promoter,downstream
28	LOC_Os02g15178	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	8465034	8467172	+	five_prime_UTR,CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g06290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3284139	3289759	+	CDS
28	LOC_Os12g22390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12639219	12641163	-	CDS,promoter,downstream
28	LOC_Os06g18950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10766948	10773882	-	CDS,promoter,downstream
28	LOC_Os02g42840	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	25741057	25741821	-	CDS,promoter,downstream
28	LOC_Os04g19220	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10669182	10669521	+	CDS,promoter,downstream
28	LOC_Os12g14360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	8173331	8179284	-	CDS
28	LOC_Os01g31120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17019951	17022590	-	CDS,promoter,downstream
28	LOC_Os02g51980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	31820544	31824002	+	CDS,promoter,downstream
28	LOC_Os01g40890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23124487	23126491	+	CDS,downstream
28	LOC_Os10g02010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	634293	638005	-	CDS,downstream
28	LOC_Os12g34410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20819337	20821283	+	CDS,downstream
28	LOC_Os09g24140	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14335882	14336689	-	three_prime_UTR,promoter
28	LOC_Os10g18630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9378406	9379275	+	CDS,promoter,downstream
28	LOC_Os11g19200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10961502	10964617	+	CDS,promoter
28	LOC_Os07g25130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14352849	14359612	+	CDS,promoter,downstream
28	LOC_Os09g07330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3643247	3648207	-	CDS,downstream
28	LOC_Os04g07030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3722499	3725480	+	CDS,promoter,downstream
28	LOC_Os02g29990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17816988	17817950	+	CDS,promoter,downstream
28	LOC_Os10g35880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19105742	19111819	-	CDS,downstream
28	LOC_Os10g16470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8140348	8143083	-	CDS,promoter,downstream
28	LOC_Os10g01590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	389759	391186	-	CDS,promoter,downstream
28	LOC_Os02g50510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30838230	30844188	-	CDS
28	LOC_Os01g28870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16163743	16169898	-	CDS,downstream
28	LOC_Os03g47880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	27212455	27213072	+	CDS,promoter,downstream
28	LOC_Os09g08040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4148189	4151622	-	CDS,promoter
28	LOC_Os12g12490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6877222	6883485	-	CDS,promoter
28	LOC_Os03g10000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	5004668	5007806	-	CDS,downstream
28	LOC_Os09g02490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1030306	1032991	-	CDS,promoter,downstream
28	LOC_Os04g08710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4721329	4723803	+	CDS,promoter,downstream
28	LOC_Os03g40120	hypothetical protein	gene	hypothetical protein	chr3	22293878	22294396	-	CDS,promoter
28	LOC_Os07g29500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17316986	17320814	-	CDS,promoter
28	LOC_Os06g25870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15117063	15118214	-	CDS,promoter,downstream
28	LOC_Os02g34520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	20683402	20688269	+	CDS
28	LOC_Os10g18930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9566353	9567267	-	CDS,promoter,downstream
28	LOC_Os12g16830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9645799	9647541	-	CDS,promoter,downstream
28	LOC_Os02g25260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14699676	14706157	-	CDS,promoter,downstream
28	LOC_Os04g20040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11154478	11158368	+	CDS,promoter,downstream
28	LOC_Os02g16970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9683318	9687172	+	CDS,promoter,downstream
28	LOC_Os08g31219	ribosomal protein L27, putative, expressed	gene	ribosomal protein L27, putative, expressed	chr8	19302026	19303308	+	CDS,three_prime_UTR,promoter
28	LOC_Os06g07260	OsWAK62 - OsWAK short gene	gene	OsWAK62 - OsWAK short gene	chr6	3476114	3476404	-	CDS,downstream
28	LOC_Os01g29660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16620374	16621603	-	CDS,promoter,downstream
28	LOC_Os08g26400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	16081591	16083888	-	CDS,promoter,downstream
28	LOC_Os01g40810	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	23055143	23061294	-	CDS,downstream
28	LOC_Os09g08010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4124391	4126330	-	CDS,promoter,downstream
28	LOC_Os04g49070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	29071486	29073860	-	CDS,downstream
28	LOC_Os07g22750	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12835730	12837656	+	CDS,promoter,downstream
28	LOC_Os04g25470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14752994	14760563	+	CDS,downstream
28	LOC_Os12g18090	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	10397272	10399988	-	CDS,downstream
28	LOC_Os11g14660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8258116	8258776	+	CDS,promoter,downstream
28	LOC_Os12g20190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11757941	11767653	-	CDS,promoter,downstream
28	LOC_Os03g13110	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr3	7078551	7081284	+	CDS,downstream
28	LOC_Os04g12040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6602173	6608171	-	CDS,promoter,downstream
28	LOC_Os09g36420	hsp90 protein, expressed	gene	hsp90 protein, expressed	chr9	21011394	21019524	+	CDS,promoter,downstream
28	LOC_Os04g11680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6404241	6407562	+	CDS,promoter,downstream
28	LOC_Os07g18200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10787960	10790712	-	CDS,promoter,downstream
28	LOC_Os04g38080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22477971	22481546	-	CDS,downstream
28	LOC_Os06g17380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10071239	10074357	+	CDS,downstream
28	LOC_Os12g23000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13002588	13005284	+	CDS,downstream
28	LOC_Os08g17720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10839797	10843144	+	CDS,downstream
28	LOC_Os07g32000	hypothetical protein	gene	hypothetical protein	chr7	19033693	19035420	-	CDS,promoter
28	LOC_Os05g17570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10089799	10096592	+	CDS,promoter,downstream
28	LOC_Os01g24100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13590195	13592369	+	CDS,promoter
28	LOC_Os04g22780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	12892618	12892911	+	CDS,promoter,downstream
28	LOC_Os04g13800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7690853	7694386	+	CDS,promoter,downstream
28	LOC_Os06g24670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14486499	14489310	-	CDS,promoter
28	LOC_Os04g07680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4084145	4086461	+	CDS,downstream
28	LOC_Os03g40360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22428727	22430370	+	CDS,promoter
28	LOC_Os01g46900	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr1	26762514	26766108	+	CDS
28	LOC_Os02g34490	Leucine Rich Repeat family protein, expressed	gene	Leucine Rich Repeat family protein, expressed	chr2	20657590	20662944	+	CDS,downstream
28	LOC_Os04g18910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10504479	10507693	+	CDS,promoter,downstream
28	LOC_Os08g19350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11570019	11576174	+	CDS,downstream
28	LOC_Os08g24990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	15153133	15159228	+	CDS,downstream
28	LOC_Os05g14720	hypothetical protein	gene	hypothetical protein	chr5	8363535	8364395	+	CDS,promoter
28	LOC_Os01g24660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13879218	13882253	+	CDS
28	LOC_Os08g16410	hypothetical protein	gene	hypothetical protein	chr8	10035116	10035427	-	CDS,promoter,downstream
28	LOC_Os05g40670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23786913	23789616	-	CDS,promoter,downstream
28	LOC_Os08g07610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	4269219	4273984	+	CDS
28	LOC_Os01g27200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15167066	15169218	+	CDS
28	LOC_Os09g12470	hypothetical protein	gene	hypothetical protein	chr9	7128773	7129316	-	CDS,promoter,downstream
28	LOC_Os02g22790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13572273	13578057	-	CDS,promoter
28	LOC_Os07g26810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15490440	15495047	-	CDS,promoter,downstream
28	LOC_Os12g12400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6828160	6830764	+	CDS,downstream
28	LOC_Os08g13510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8034844	8037396	-	CDS,promoter,downstream
28	LOC_Os05g17670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	10168640	10172075	+	CDS,promoter,downstream
28	LOC_Os06g27690	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15678536	15680957	+	CDS,promoter,downstream
28	LOC_Os02g16010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	9089342	9095713	+	CDS,promoter,downstream
28	LOC_Os06g26270	prefoldin, putative, expressed	gene	prefoldin, putative, expressed	chr6	15378497	15383234	-	CDS,promoter,downstream
28	LOC_Os10g11610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6429250	6429858	-	CDS,promoter,downstream
28	LOC_Os03g53560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	30706500	30710722	+	CDS,downstream
28	LOC_Os04g43860	hypothetical protein	gene	hypothetical protein	chr4	25791794	25793919	-	CDS,downstream
28	LOC_Os07g12020	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	6708008	6713172	+	CDS,downstream
28	LOC_Os08g25680	hypothetical protein	gene	hypothetical protein	chr8	15621572	15623285	+	CDS,downstream
28	LOC_Os12g29120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17228841	17232035	-	CDS,promoter,downstream
28	LOC_Os02g55210	carboxyl-terminal proteinase, putative, expressed	gene	carboxyl-terminal proteinase, putative, expressed	chr2	33809943	33812507	-	CDS,promoter,downstream
28	LOC_Os11g32590	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr11	18764245	18766029	+	CDS,downstream
28	LOC_Os10g07370	hypothetical protein	gene	hypothetical protein	chr10	3877264	3883630	+	CDS,promoter
28	LOC_Os05g28430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16585148	16588241	+	CDS,promoter,downstream
28	LOC_Os02g22170	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13206735	13209684	+	CDS,promoter,downstream
28	LOC_Os10g08530	hypothetical protein	gene	hypothetical protein	chr10	4641770	4644832	+	CDS,promoter
28	LOC_Os02g36060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	21670474	21674413	-	CDS
28	LOC_Os06g35780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	20878191	20883205	+	CDS
28	LOC_Os04g27170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	15877366	15878654	+	CDS,promoter,downstream
28	LOC_Os04g22840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12928859	12932968	-	CDS,downstream
28	LOC_Os07g30730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18188591	18193156	-	CDS,promoter
28	LOC_Os11g29309	unknown	gene	unknown	chr11	16534392	16534699	+	CDS,downstream
28	LOC_Os07g39230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23485165	23489489	+	CDS
28	LOC_Os08g30950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19104737	19107537	+	CDS,promoter,downstream
28	LOC_Os10g15079	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7907111	7915152	-	CDS,promoter,downstream
28	LOC_Os10g06830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3561993	3566711	+	CDS,promoter
28	LOC_Os06g40980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	24467648	24471121	-	CDS
28	LOC_Os09g13120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7564155	7564837	-	CDS,promoter,downstream
28	LOC_Os03g49980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	28490290	28500248	-	CDS,promoter,downstream
28	LOC_Os08g12440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	7349202	7355182	-	CDS,promoter
28	LOC_Os04g35640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21544862	21547203	+	CDS,promoter,downstream
28	LOC_Os04g16360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8889645	8890813	+	CDS,promoter,downstream
28	LOC_Os12g21910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12333606	12338741	+	CDS,downstream
28	LOC_Os01g19894	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	11291641	11304781	-	CDS
28	LOC_Os08g36188	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr8	22821386	22822330	-	CDS,promoter,downstream
28	LOC_Os03g29130	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	16542090	16545812	+	CDS
28	LOC_Os08g33280	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr8	20732601	20738517	-	CDS,promoter,downstream
28	LOC_Os11g17160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9520757	9524963	-	CDS
28	LOC_Os11g37400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21618911	21622189	+	CDS,downstream
28	LOC_Os12g23260	hypothetical protein	gene	hypothetical protein	chr12	13160128	13161920	+	CDS,downstream
28	LOC_Os12g18710	hypothetical protein	gene	hypothetical protein	chr12	10812452	10814218	+	CDS,promoter
28	LOC_Os06g02080	hypothetical protein	gene	hypothetical protein	chr6	612912	613862	-	CDS,promoter,downstream
28	LOC_Os08g19070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11383050	11383322	+	CDS,promoter,downstream
28	LOC_Os08g17230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10547905	10550795	-	CDS,promoter,downstream
28	LOC_Os01g39450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	22223529	22225817	+	CDS,downstream
28	LOC_Os10g08090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4395564	4398142	-	CDS,promoter
28	LOC_Os08g35560	expressed protein	gene	expressed protein	chr8	22398546	22401389	+	five_prime_UTR,promoter
28	LOC_Os04g43720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	25687908	25693287	-	CDS,downstream
28	LOC_Os10g21850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11156128	11162764	+	CDS,promoter
28	LOC_Os12g31390	hypothetical protein	gene	hypothetical protein	chr12	18855176	18855801	+	CDS,promoter,downstream
28	LOC_Os04g28350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	16602250	16606820	+	CDS,downstream
28	LOC_Os07g20280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11689136	11695922	-	CDS,promoter
28	LOC_Os02g21560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12798340	12804725	-	CDS,promoter,downstream
28	LOC_Os10g18160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	9148179	9154070	+	CDS
28	LOC_Os03g36380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20170646	20172116	+	CDS,promoter,downstream
28	LOC_Os10g19950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9932298	9935413	-	CDS,promoter,downstream
28	LOC_Os08g12190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7174124	7176755	+	CDS,promoter,downstream
28	LOC_Os04g22610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12797940	12801865	+	CDS,promoter,downstream
28	LOC_Os04g32140	microneme protein Sm70, putative	gene	microneme protein Sm70, putative	chr4	19108357	19109472	-	CDS,promoter,downstream
28	LOC_Os04g11230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6130369	6135491	+	CDS,downstream
28	LOC_Os06g19240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10945681	10950255	+	CDS,promoter
28	LOC_Os07g22200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12388653	12393974	-	CDS,downstream
28	LOC_Os02g53550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	32755126	32761261	-	CDS
28	LOC_Os08g16380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10011279	10013979	+	CDS,promoter
28	LOC_Os08g25660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15608611	15611471	-	CDS
28	LOC_Os02g33340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	19802054	19806078	+	CDS,downstream
28	LOC_Os07g46140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	27535189	27541217	+	CDS,downstream
28	LOC_Os04g19410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10804857	10806600	+	CDS,promoter,downstream
28	LOC_Os12g35380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21478636	21482203	+	CDS,promoter,downstream
28	LOC_Os01g35710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19768044	19773246	-	CDS,promoter,downstream
28	LOC_Os11g21920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12116509	12116895	-	CDS,promoter,downstream
28	LOC_Os05g34750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	20552738	20556281	+	CDS
28	LOC_Os10g17900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8973369	8980548	-	CDS,promoter,downstream
28	LOC_Os10g24660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12601225	12601980	-	CDS,promoter,downstream
28	LOC_Os12g22890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	12927680	12928147	+	CDS,promoter,downstream
28	LOC_Os03g40240	hypothetical protein	gene	hypothetical protein	chr3	22364221	22365313	+	CDS,promoter
28	LOC_Os07g03560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	1420312	1426442	-	CDS
28	LOC_Os07g25480	hypothetical protein	gene	hypothetical protein	chr7	14593591	14593870	+	CDS,promoter
28	LOC_Os01g07840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	3763546	3773641	+	CDS
28	LOC_Os07g16100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9381198	9382668	-	CDS,promoter,downstream
28	LOC_Os02g29260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17377800	17382890	+	CDS,promoter,downstream
28	LOC_Os04g23799	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13589831	13595157	-	CDS,promoter
28	LOC_Os12g26890	hypothetical protein	gene	hypothetical protein	chr12	15760792	15761951	-	CDS,promoter,downstream
28	LOC_Os05g26970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15609019	15614160	-	CDS,promoter,downstream
28	LOC_Os06g31430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18291428	18296508	-	CDS,promoter
28	LOC_Os03g37890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21041385	21044078	+	CDS,downstream
28	LOC_Os11g30990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17557176	17561583	-	CDS
28	LOC_Os10g11702	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6484852	6489279	+	CDS,promoter,downstream
28	LOC_Os12g04830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2068534	2074314	+	CDS,promoter,downstream
28	LOC_Os11g22010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12187419	12194116	+	CDS,promoter,downstream
28	LOC_Os10g17980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9040776	9044602	+	CDS,promoter,downstream
28	LOC_Os08g03720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	1764160	1769825	+	CDS,downstream
28	LOC_Os12g13180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7341980	7346875	+	CDS,downstream
28	LOC_Os10g14960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7852932	7854068	+	CDS,promoter,downstream
28	LOC_Os03g37060	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr3	20547235	20548586	-	CDS,promoter
28	LOC_Os07g47880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28598699	28599214	-	CDS,promoter,downstream
28	LOC_Os07g33190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19813824	19818030	+	CDS,promoter,downstream
28	LOC_Os07g33490	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20019524	20021476	+	CDS,promoter
28	LOC_Os02g25220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14659161	14662082	-	CDS,promoter,downstream
28	LOC_Os10g07248	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3810184	3821843	+	CDS,downstream
28	LOC_Os07g29490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17314553	17315571	+	CDS,downstream
28	LOC_Os01g36900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20548566	20557628	-	CDS,promoter,downstream
28	LOC_Os08g09140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5294087	5299567	+	CDS,promoter,downstream
28	LOC_Os02g20840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	12312582	12318463	+	CDS,promoter,downstream
28	LOC_Os09g01460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	339172	339795	-	CDS,promoter,downstream
28	LOC_Os06g11570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	6130904	6136479	+	CDS,promoter
28	LOC_Os12g38680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	23721204	23726612	-	CDS,downstream
28	LOC_Os05g50060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	28628006	28631746	+	CDS,promoter,downstream
28	LOC_Os02g30930	hypothetical protein	gene	hypothetical protein	chr2	18468625	18470220	+	CDS,promoter,downstream
28	LOC_Os04g14530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8128593	8128967	-	CDS,promoter,downstream
28	LOC_Os04g07310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3881755	3882295	-	CDS,promoter,downstream
28	LOC_Os08g12650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7478503	7481149	-	CDS,promoter,downstream
28	LOC_Os11g25874	hypothetical protein	gene	hypothetical protein	chr11	14284281	14285696	+	CDS,downstream
28	LOC_Os10g38440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20460856	20462573	-	CDS,promoter
28	LOC_Os01g05200	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	2440246	2443912	+	CDS,downstream
28	LOC_Os10g16580	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8196671	8198042	+	CDS,promoter,downstream
28	LOC_Os11g12070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6713092	6714357	-	CDS,promoter,downstream
28	LOC_Os05g44840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26002290	26003719	-	CDS,promoter,downstream
28	LOC_Os04g07500	hypothetical protein	gene	hypothetical protein	chr4	3988789	3989025	+	CDS,promoter,downstream
28	LOC_Os06g21030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12147959	12150679	+	CDS
28	LOC_Os02g02060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	600136	604671	-	CDS,promoter,downstream
28	LOC_Os07g24940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14188815	14192799	+	CDS,downstream
28	LOC_Os06g48080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29092084	29093768	+	CDS,promoter,downstream
28	LOC_Os03g22220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	12748267	12749752	-	CDS,promoter,downstream
28	LOC_Os04g56020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33179023	33181068	+	CDS,promoter,downstream
28	LOC_Os06g29070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16573659	16573997	+	CDS,promoter,downstream
28	LOC_Os10g07554	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4068125	4072918	+	CDS,promoter
28	LOC_Os12g38600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	23680094	23682274	+	CDS,promoter
28	LOC_Os06g15890	hypothetical protein	gene	hypothetical protein	chr6	9018349	9018789	-	CDS,promoter,downstream
28	LOC_Os07g16830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9880180	9883201	+	CDS,downstream
28	LOC_Os12g36590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22370256	22378125	+	CDS,downstream
28	LOC_Os01g39360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	22151169	22153315	+	CDS,promoter,downstream
28	LOC_Os08g26140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	15901073	15902188	-	CDS,promoter,downstream
28	LOC_Os11g29660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	16724563	16727867	-	CDS,promoter,downstream
28	LOC_Os04g03120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1291179	1296076	-	CDS
28	LOC_Os11g35510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20342880	20346040	+	CDS
28	LOC_Os06g21790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12595104	12595701	-	CDS
28	LOC_Os09g03910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1999116	2000072	-	CDS,promoter,downstream
28	LOC_Os12g43290	hypothetical protein	gene	hypothetical protein	chr12	26836241	26838552	-	CDS,promoter
28	LOC_Os08g40970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25920428	25922235	+	CDS,promoter
28	LOC_Os03g49910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	28451009	28455207	+	CDS,promoter,downstream
28	LOC_Os03g29220	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr3	16613598	16615649	-	CDS,downstream
28	LOC_Os12g19285	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	11174347	11176060	-	three_prime_UTR,promoter
28	LOC_Os07g30000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17669280	17673502	-	CDS,promoter
28	LOC_Os02g25210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14655721	14656800	+	CDS,promoter,downstream
28	LOC_Os11g08510	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	4487941	4490675	-	CDS
28	LOC_Os10g18590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9355933	9359599	+	CDS,promoter,downstream
28	LOC_Os11g26370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14625587	14626717	-	CDS,promoter,downstream
28	LOC_Os08g42250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	26673067	26676795	+	CDS,promoter
28	LOC_Os01g54820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	31528721	31531943	+	CDS,promoter,downstream
28	LOC_Os11g11870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6584273	6585479	-	CDS,promoter
28	LOC_Os08g15220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9212350	9216797	+	CDS,downstream
28	LOC_Os11g29610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16704786	16709042	+	CDS,promoter,downstream
28	LOC_Os09g38940	hypothetical protein	gene	hypothetical protein	chr9	22358487	22360363	-	CDS,downstream
28	LOC_Os07g15250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8789252	8793685	+	CDS,promoter
28	LOC_Os02g22540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13445136	13446404	+	CDS,promoter,downstream
28	LOC_Os02g23880	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13827699	13828785	+	CDS,promoter,downstream
28	LOC_Os06g36960	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	21771555	21778666	+	CDS,promoter,downstream
28	LOC_Os05g13880	hypothetical protein	gene	hypothetical protein	chr5	7713171	7713509	+	CDS,promoter
28	LOC_Os10g33000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	17205718	17208649	+	CDS,promoter,downstream
28	LOC_Os02g47340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	28897987	28903844	-	CDS
28	LOC_Os12g25500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14755442	14758860	+	CDS
28	LOC_Os01g29620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16600892	16604800	-	CDS
28	LOC_Os09g22250	hypothetical protein	gene	hypothetical protein	chr9	13458134	13460045	-	CDS,promoter,downstream
28	LOC_Os05g05630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	2798688	2803379	-	CDS,promoter
28	LOC_Os07g45890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27380288	27386016	-	CDS,downstream
28	LOC_Os12g11230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6054284	6057571	+	CDS
28	LOC_Os09g21610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13081114	13087212	-	CDS,promoter
28	LOC_Os12g25000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14351115	14353502	+	CDS,downstream
28	LOC_Os11g06259	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	2990007	2994584	+	CDS,downstream
28	LOC_Os06g09770	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	4973619	4976602	+	CDS,downstream
28	LOC_Os04g32890	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	19693483	19695420	-	CDS,three_prime_UTR,promoter
28	LOC_Os08g19520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11667111	11672509	+	CDS,downstream
28	LOC_Os06g25080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14672909	14674347	+	CDS,downstream
28	LOC_Os02g16220	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	9215265	9222849	-	CDS,promoter
28	LOC_Os01g46626	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	26544737	26549036	-	CDS,promoter
28	LOC_Os02g26630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	15628885	15632059	+	CDS,promoter,downstream
28	LOC_Os12g42750	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	26529396	26531016	-	CDS,promoter
28	LOC_Os07g11830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6543927	6546778	+	CDS,promoter,downstream
28	LOC_Os02g31180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18664282	18669924	-	CDS,promoter
28	LOC_Os04g32130	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr4	19104255	19107272	+	CDS,downstream
28	LOC_Os06g25280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14794633	14798035	-	CDS,downstream
28	LOC_Os08g11030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6494026	6494968	-	CDS,promoter
28	LOC_Os05g15980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9023252	9026175	+	CDS,promoter,downstream
28	LOC_Os04g30650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18132945	18138628	-	CDS,promoter,downstream
28	LOC_Os10g11080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6143078	6145389	-	CDS,promoter,downstream
28	LOC_Os11g40315	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	23565723	23568560	-	three_prime_UTR,promoter
28	LOC_Os01g37610	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	21047733	21052665	-	CDS
28	LOC_Os11g01470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	271765	279565	+	CDS
28	LOC_Os04g23030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13066255	13069779	-	CDS
28	LOC_Os02g34010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	20305513	20311085	-	CDS
28	LOC_Os03g44510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25051651	25054909	-	CDS,promoter
28	LOC_Os03g38130	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	21171549	21174343	-	CDS,promoter,downstream
28	LOC_Os04g18170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10035300	10037141	+	CDS,promoter,downstream
28	LOC_Os08g26510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16138163	16140112	+	CDS,promoter
28	LOC_Os11g44720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26585534	26590617	+	CDS,downstream
28	LOC_Os04g07784	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	4129284	4137792	+	CDS,promoter,downstream
28	LOC_Os08g20100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12047788	12048228	-	CDS,downstream
28	LOC_Os10g01520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	331989	335465	+	CDS,promoter
28	LOC_Os02g26820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15741979	15742407	+	CDS,promoter,downstream
28	LOC_Os02g28940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17127794	17128934	-	CDS,promoter,downstream
28	LOC_Os09g01550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	391702	394663	+	CDS,promoter,downstream
28	LOC_Os06g11250	12-oxophytodienoate reductase, putative	gene	12-oxophytodienoate reductase, putative	chr6	5898564	5900378	-	CDS,promoter
28	LOC_Os12g39730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	24501302	24505155	-	CDS
28	LOC_Os05g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14314075	14317720	-	CDS,promoter,downstream
28	LOC_Os11g09910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5296472	5297635	-	CDS,promoter,downstream
28	LOC_Os06g15280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8671785	8673347	+	CDS,promoter,downstream
28	LOC_Os05g08694	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4756684	4764706	+	CDS,promoter,downstream
28	LOC_Os03g25580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14635822	14638825	+	CDS,promoter,downstream
28	LOC_Os02g07270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3733921	3735012	+	CDS,promoter,downstream
28	LOC_Os07g16610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9742513	9747632	-	CDS,downstream
28	LOC_Os11g40360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	23593801	23599395	+	CDS
28	LOC_Os05g36220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	21412604	21414838	+	CDS,promoter,downstream
28	LOC_Os09g04640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2474500	2476891	+	CDS,downstream
28	LOC_Os05g43340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25141853	25144756	+	CDS,promoter,downstream
28	LOC_Os08g33270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20725949	20732359	+	CDS,promoter,downstream
28	LOC_Os03g02340	expressed protein	gene	expressed protein	chr3	817856	820110	+	CDS
28	LOC_Os02g25710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15045900	15050809	+	CDS,downstream
28	LOC_Os07g45680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27271985	27278072	+	CDS,promoter,downstream
28	LOC_Os06g21260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12291025	12295851	-	CDS,promoter
28	LOC_Os12g17850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10230130	10231872	+	CDS,promoter,downstream
28	LOC_Os03g35788	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19832246	19841974	-	CDS,promoter,downstream
28	LOC_Os06g25690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15009499	15011115	-	CDS,promoter
28	LOC_Os12g03160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	1202491	1205222	+	CDS,promoter
28	LOC_Os01g16730	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	gene	ulp1 protease family, C-terminal catalytic domain containing protein, expressed	chr1	9493785	9502157	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os06g31540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18334510	18340071	-	CDS,promoter
28	LOC_Os07g12420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7083611	7086344	+	CDS,promoter
28	LOC_Os11g02910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	999364	1002338	-	CDS,promoter,downstream
28	LOC_Os07g19379	unknown	gene	unknown	chr7	11469928	11470326	-	CDS,promoter
28	LOC_Os11g28740	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr11	16173627	16176825	+	CDS,promoter
28	LOC_Os06g07710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3732347	3735479	+	CDS,downstream
28	LOC_Os10g15220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7996691	7998469	+	CDS,promoter,downstream
28	LOC_Os07g15150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	8695377	8700755	-	CDS,promoter
28	LOC_Os07g23400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	13186213	13189804	-	CDS,promoter
28	LOC_Os10g06430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3299767	3305514	-	CDS,promoter,downstream
28	LOC_Os07g15750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9141775	9142773	+	CDS,promoter,downstream
28	LOC_Os11g18450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10397547	10401427	-	CDS,promoter,downstream
28	LOC_Os09g15130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9179360	9181566	+	CDS,promoter,downstream
28	LOC_Os01g31080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16988339	16990956	+	CDS,promoter,downstream
28	LOC_Os04g42810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	25157822	25159613	-	CDS
28	LOC_Os01g19050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10771964	10776921	-	CDS,downstream
28	LOC_Os12g13620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7654913	7655626	+	CDS,promoter,downstream
28	LOC_Os10g04316	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2034111	2040497	+	CDS,promoter,downstream
28	LOC_Os04g53090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	31432304	31438231	+	CDS
28	LOC_Os12g36470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22282010	22285314	+	CDS,downstream
28	LOC_Os08g37170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	23478527	23481640	+	CDS,promoter
28	LOC_Os11g22160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12249657	12257841	+	CDS,promoter
28	LOC_Os07g35240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	21086302	21092986	-	CDS
28	LOC_Os10g24400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12433820	12440320	+	CDS
28	LOC_Os02g20350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11988332	11992855	+	CDS,promoter,downstream
28	LOC_Os02g34200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	20451887	20458037	+	CDS,promoter,downstream
28	LOC_Os08g37160	hypothetical protein	gene	hypothetical protein	chr8	23475355	23477995	+	CDS,downstream
28	LOC_Os06g15200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8610138	8613561	-	CDS,promoter,downstream
28	LOC_Os08g25520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15523220	15525975	+	CDS,promoter,downstream
28	LOC_Os11g18900	expressed protein	gene	expressed protein	chr11	10746049	10748577	+	CDS,promoter,downstream
28	LOC_Os04g02390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	857955	859421	+	CDS,downstream
28	LOC_Os08g08680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	5023482	5026628	-	CDS,promoter
28	LOC_Os10g10820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6002285	6005243	-	CDS,promoter,downstream
28	LOC_Os04g11600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6346020	6347664	-	CDS,promoter
28	LOC_Os02g05210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2490680	2493853	-	CDS
28	LOC_Os05g25080	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	14463534	14466800	+	CDS,promoter
28	LOC_Os01g45050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25566473	25571925	-	CDS,downstream
28	LOC_Os05g02330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	750884	752155	-	CDS,promoter
28	LOC_Os04g22930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13005155	13008509	+	CDS
28	LOC_Os05g15320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8680563	8683713	+	CDS,downstream
28	LOC_Os07g12950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	7427695	7434962	+	CDS,promoter
28	LOC_Os01g63520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36818269	36821573	+	CDS,promoter,downstream
28	LOC_Os09g01760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	526739	530038	-	CDS,promoter,downstream
28	LOC_Os05g44490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25824888	25829462	+	CDS,promoter
28	LOC_Os09g03420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1686418	1692372	+	CDS,promoter
28	LOC_Os06g22710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	13205699	13211427	+	CDS
28	LOC_Os05g22900	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr5	12957816	12962064	-	CDS,promoter,downstream
28	LOC_Os07g15840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	9201355	9203918	-	CDS,promoter,downstream
28	LOC_Os07g25100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14334784	14337623	-	CDS,promoter
28	LOC_Os10g23860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12165847	12167239	-	CDS,promoter,downstream
28	LOC_Os12g01470	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	282777	287007	+	CDS,downstream
28	LOC_Os09g03200	hypothetical protein	gene	hypothetical protein	chr9	1538971	1539198	+	CDS,downstream
28	LOC_Os06g37720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22337743	22343829	+	CDS,downstream
28	LOC_Os04g04930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2370073	2373393	+	CDS,downstream
28	LOC_Os10g27100	hypothetical protein	gene	hypothetical protein	chr10	14212706	14216463	+	CDS
28	LOC_Os11g25310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13955636	13956686	+	CDS,promoter,downstream
28	LOC_Os11g23100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12829433	12835426	-	CDS,promoter,downstream
28	LOC_Os05g28080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	16358132	16359845	-	CDS,promoter
28	LOC_Os01g24460	histone-like transcription factor and archaeal histone, putative, expressed	gene	histone-like transcription factor and archaeal histone, putative, expressed	chr1	13787441	13788864	+	CDS,promoter,downstream
28	LOC_Os07g18340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10865447	10868900	-	CDS,promoter,downstream
28	LOC_Os04g01120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	72973	75920	+	CDS,promoter,downstream
28	LOC_Os09g07230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3534759	3542841	+	CDS,promoter,downstream
28	LOC_Os08g16290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9942181	9946108	-	CDS,promoter,downstream
28	LOC_Os05g15200	zinc knuckle family protein	gene	zinc knuckle family protein	chr5	8626888	8628650	+	CDS,promoter,downstream
28	LOC_Os11g12440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	6945834	6948873	-	CDS
28	LOC_Os07g29460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17300280	17304015	-	CDS,promoter,downstream
28	LOC_Os05g02270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	727949	729334	+	CDS,promoter,downstream
28	LOC_Os08g42160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26639049	26643032	-	CDS
28	LOC_Os05g17040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9717399	9720335	-	CDS,promoter,downstream
28	LOC_Os08g20690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12431783	12434773	+	CDS,downstream
28	LOC_Os02g28420	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	16801967	16804441	-	CDS
28	LOC_Os05g20360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11934536	11940223	+	CDS,downstream
28	LOC_Os06g42370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25457986	25467469	+	CDS,promoter,downstream
28	LOC_Os12g29050	hypothetical protein	gene	hypothetical protein	chr12	17193965	17194562	+	CDS,promoter,downstream
28	LOC_Os04g17260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9454001	9460159	+	CDS,promoter,downstream
28	LOC_Os05g20330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11918683	11924427	+	CDS
28	LOC_Os11g24030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13159266	13160820	-	CDS,promoter,downstream
28	LOC_Os06g39450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	23424305	23428378	-	CDS,promoter,downstream
28	LOC_Os05g14090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7868144	7872919	+	CDS,downstream
28	LOC_Os05g15820	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	8934796	8937656	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os11g37820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21930733	21936878	+	CDS,downstream
28	LOC_Os09g25690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	15419769	15420566	-	CDS,promoter,downstream
28	LOC_Os04g18390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	10142493	10148388	-	CDS,downstream
28	LOC_Os11g42250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24985753	24990174	-	CDS,promoter,downstream
28	LOC_Os04g33120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19877790	19881553	-	CDS,promoter,downstream
28	LOC_Os10g09890	hypothetical protein	gene	hypothetical protein	chr10	5377278	5377823	+	CDS,promoter
28	LOC_Os08g13340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	7924727	7928968	-	CDS,promoter,downstream
28	LOC_Os05g31430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	18219928	18222854	+	CDS,downstream
28	LOC_Os03g32119	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18378480	18385302	+	CDS,downstream
28	LOC_Os06g27680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	15664969	15669541	+	CDS,promoter,downstream
28	LOC_Os05g18720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10839237	10845057	-	CDS,promoter,downstream
28	LOC_Os02g15140	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	8433457	8436706	+	five_prime_UTR,promoter
28	LOC_Os07g23570	cytochrome P450 72A1, putative, expressed	gene	cytochrome P450 72A1, putative, expressed	chr7	13322938	13325408	+	CDS,three_prime_UTR,downstream
28	LOC_Os11g25520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	14072229	14078124	+	CDS,promoter
28	LOC_Os08g29290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17963725	17971130	+	CDS,promoter,downstream
28	LOC_Os11g22540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12488100	12496843	+	CDS,downstream
28	LOC_Os08g37530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	23764696	23770806	+	CDS,promoter,downstream
28	LOC_Os07g20470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11819916	11821267	-	CDS,promoter,downstream
28	LOC_Os02g25770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	15089617	15099533	+	CDS
28	LOC_Os07g24620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14006718	14009582	-	CDS,promoter,downstream
28	LOC_Os06g31150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18094096	18096795	-	CDS,promoter
28	LOC_Os12g19800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11543651	11544386	-	CDS,promoter,downstream
28	LOC_Os11g22920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12713329	12715115	+	CDS
28	LOC_Os05g24670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14216240	14218392	-	CDS,promoter,downstream
28	LOC_Os08g33070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20540943	20545262	-	CDS,promoter
28	LOC_Os11g17710	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	9887238	9887657	-	CDS,promoter,downstream
28	LOC_Os11g22300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12317582	12323719	+	CDS,promoter,downstream
28	LOC_Os12g32210	autophagy-related protein 10, putative, expressed	gene	autophagy-related protein 10, putative, expressed	chr12	19412188	19418666	+	three_prime_UTR,downstream
28	LOC_Os08g21630	RAD23 protein, putative	gene	RAD23 protein, putative	chr8	12881544	12882217	-	CDS,promoter,downstream
28	LOC_Os11g19660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11319976	11322565	-	CDS,promoter,downstream
28	LOC_Os06g38070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22509716	22513920	-	CDS,promoter
28	LOC_Os07g27820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16234531	16237460	+	CDS,promoter,downstream
28	LOC_Os10g30230	hypothetical protein	gene	hypothetical protein	chr10	15631787	15632401	+	CDS,downstream
28	LOC_Os07g35460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	21204295	21207816	-	CDS,promoter,downstream
28	LOC_Os07g24489	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13945117	13945359	+	CDS,promoter,downstream
28	LOC_Os03g35730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19792938	19795608	+	CDS,promoter,downstream
28	LOC_Os06g34260	hypothetical protein	gene	hypothetical protein	chr6	19941281	19942503	+	CDS,promoter,downstream
28	LOC_Os03g40980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	22773593	22773919	+	CDS,downstream
28	LOC_Os07g30720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18181456	18183232	-	CDS,promoter,downstream
28	LOC_Os10g11454	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6351264	6365220	-	CDS,promoter
28	LOC_Os11g23236	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12933702	12936880	+	CDS,promoter,downstream
28	LOC_Os03g43290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	24134122	24138468	-	CDS,promoter
28	LOC_Os06g32760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19047122	19049679	+	CDS
28	LOC_Os01g38800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21764717	21765171	+	CDS,promoter,downstream
28	LOC_Os03g29284	unknown	gene	unknown	chr3	16671331	16672560	-	CDS,promoter,downstream
28	LOC_Os05g20280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11880021	11882989	+	CDS,promoter,downstream
28	LOC_Os03g35420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19639684	19640223	-	CDS,promoter
28	LOC_Os06g42240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25359859	25362118	-	CDS,promoter
28	LOC_Os12g25940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15054172	15059406	-	CDS,downstream
28	LOC_Os12g32690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	19706168	19714591	-	CDS
28	LOC_Os03g30390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	17323547	17326708	+	CDS,promoter,downstream
28	LOC_Os04g22820	hypothetical protein	gene	hypothetical protein	chr4	12916246	12916698	-	CDS,promoter,downstream
28	LOC_Os11g27910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15595182	15598338	+	CDS,promoter,downstream
28	LOC_Os01g18810	hypothetical protein	gene	hypothetical protein	chr1	10627367	10629517	-	CDS,downstream
28	LOC_Os05g29720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	17125353	17131603	-	CDS,downstream
28	LOC_Os09g15020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9052615	9057327	+	CDS,promoter,downstream
28	LOC_Os07g10080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	5390562	5398380	+	CDS,downstream
28	LOC_Os12g16330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9337960	9338496	+	CDS,promoter,downstream
28	LOC_Os07g11180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6160715	6163699	+	CDS
28	LOC_Os06g28170	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16001990	16005099	-	CDS,promoter,downstream
28	LOC_Os12g31250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18784292	18788713	+	CDS,promoter,downstream
28	LOC_Os06g25150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14712431	14715088	-	CDS,promoter
28	LOC_Os07g06950	ubiquitin carboxyl-terminal hydrolase, putative, expressed	gene	ubiquitin carboxyl-terminal hydrolase, putative, expressed	chr7	3410720	3423508	+	CDS,promoter
28	LOC_Os11g44770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26622430	26628372	-	CDS,promoter,downstream
28	LOC_Os06g39980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23785620	23787341	+	CDS,promoter
28	LOC_Os12g29010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17154823	17159405	-	CDS,promoter,downstream
28	LOC_Os11g25070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13827932	13831658	+	CDS,downstream
28	LOC_Os06g40390	hypothetical protein	gene	hypothetical protein	chr6	24054533	24055578	+	CDS,promoter,downstream
28	LOC_Os07g17240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10161061	10167693	-	CDS,promoter
28	LOC_Os04g28450	hypothetical protein	gene	hypothetical protein	chr4	16662966	16664083	-	CDS,promoter
28	LOC_Os10g28140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14538356	14539869	-	CDS,downstream
28	LOC_Os12g02900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1062020	1067900	+	CDS
28	LOC_Os08g31210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	19296415	19298970	+	CDS,promoter,downstream
28	LOC_Os08g07220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4022677	4027702	+	CDS,downstream
28	LOC_Os03g40480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	22495697	22502864	-	CDS,promoter
28	LOC_Os05g19540	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	11363230	11370415	-	CDS,downstream
28	LOC_Os06g17060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	9889633	9890998	-	CDS,promoter,downstream
28	LOC_Os07g17270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10189835	10196815	-	CDS
28	LOC_Os12g29434	wall-associated receptor kinase 3 precursor, putative	gene	wall-associated receptor kinase 3 precursor, putative	chr12	17476790	17481088	+	CDS,downstream
28	LOC_Os05g28070	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	16352308	16355307	+	CDS,promoter,downstream
28	LOC_Os02g25440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14843325	14846185	-	CDS,promoter,downstream
28	LOC_Os05g19650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11455410	11463348	-	CDS
28	LOC_Os05g07020	hypothetical protein	gene	hypothetical protein	chr5	3681858	3685704	-	CDS,downstream
28	LOC_Os01g38330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21504987	21507599	-	CDS,downstream
28	LOC_Os05g49550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	28355380	28361348	+	CDS,downstream
28	LOC_Os05g08300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4530134	4533238	-	CDS,promoter,downstream
28	LOC_Os03g45734	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25818796	25820818	-	CDS
28	LOC_Os08g07130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	3990355	3996510	+	CDS
28	LOC_Os09g10100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5502778	5504667	-	CDS,promoter,downstream
28	LOC_Os12g26310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15348960	15357048	-	CDS,promoter,downstream
28	LOC_Os05g08080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	4397181	4400952	-	CDS
28	LOC_Os12g14630	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	8354519	8359757	-	CDS,promoter
28	LOC_Os08g10980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6474608	6475843	+	CDS,promoter,downstream
28	LOC_Os07g29730	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr7	17473794	17478462	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os05g08500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	4637110	4643165	-	CDS,promoter,downstream
28	LOC_Os08g19970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	11948022	11955143	+	CDS
28	LOC_Os06g12470	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	6763464	6771922	-	CDS,downstream
28	LOC_Os01g02740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	939005	951451	-	CDS
28	LOC_Os07g15290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	8818149	8821313	+	CDS,promoter,downstream
28	LOC_Os03g30320	hypothetical protein	gene	hypothetical protein	chr3	17295613	17298280	+	CDS,downstream
28	LOC_Os07g05840	expressed protein	gene	expressed protein	chr7	2805941	2808830	-	CDS
28	LOC_Os10g24790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12674703	12680655	+	CDS,downstream
28	LOC_Os02g24300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14094749	14095958	-	CDS,downstream
28	LOC_Os07g11800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6527293	6531714	-	CDS,promoter,downstream
28	LOC_Os05g07290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3861384	3866730	-	CDS,promoter,downstream
28	LOC_Os12g27540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16216398	16216849	+	CDS,promoter,downstream
28	LOC_Os08g27450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16751673	16754996	+	CDS,downstream
28	LOC_Os08g15920	expressed protein	gene	expressed protein	chr8	9691701	9696294	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os01g23290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13080457	13082728	-	CDS,promoter,downstream
28	LOC_Os04g12230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6740705	6743761	+	CDS
28	LOC_Os04g32750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19574969	19583263	-	CDS,promoter,downstream
28	LOC_Os12g29070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17205260	17215469	+	CDS,promoter,downstream
28	LOC_Os01g35540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19660761	19662109	+	CDS,promoter,downstream
28	LOC_Os01g36510	hypothetical protein	gene	hypothetical protein	chr1	20261183	20262988	+	CDS,downstream
28	LOC_Os07g02230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	706012	717374	+	CDS
28	LOC_Os04g55310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32709191	32710303	+	CDS,downstream
28	LOC_Os04g19940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11106623	11108176	+	CDS,promoter
28	LOC_Os03g33690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19266929	19270547	+	CDS,promoter,downstream
28	LOC_Os08g21370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12746961	12749435	-	CDS,promoter
28	LOC_Os09g13510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7818822	7823483	+	CDS,promoter,downstream
28	LOC_Os02g20020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11790432	11795016	+	CDS,promoter,downstream
28	LOC_Os02g34040	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	20332600	20336824	-	CDS
28	LOC_Os11g28560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16007728	16010650	+	CDS,promoter,downstream
28	LOC_Os12g03010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1119567	1125722	-	CDS,downstream
28	LOC_Os08g19540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11681368	11685433	-	CDS,promoter,downstream
28	LOC_Os09g15920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9719008	9721699	+	CDS,promoter,downstream
28	LOC_Os10g18660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9388870	9397692	-	CDS,promoter
28	LOC_Os12g02460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	828515	830650	-	CDS
28	LOC_Os04g08804	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4821031	4824366	-	CDS,promoter,downstream
28	LOC_Os07g11400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6267531	6273409	-	CDS,promoter
28	LOC_Os12g23520	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	13297690	13312897	+	CDS,downstream
28	LOC_Os11g15090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8486898	8493008	+	CDS,promoter,downstream
28	LOC_Os09g19810	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	11857270	11859996	-	CDS,downstream
28	LOC_Os09g07540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3777505	3782048	-	CDS,promoter,downstream
28	LOC_Os02g07520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3888538	3895439	-	CDS,promoter,downstream
28	LOC_Os06g25760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15044320	15050989	+	CDS,promoter,downstream
28	LOC_Os02g16020	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	9097488	9098827	-	CDS,promoter
28	LOC_Os10g11930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6632367	6635112	-	CDS,promoter,downstream
28	LOC_Os02g28780	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	17019831	17025282	-	CDS,promoter,downstream
28	LOC_Os10g03310	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	1400269	1402601	+	CDS,promoter
28	LOC_Os05g25170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14524241	14527938	+	CDS,promoter
28	LOC_Os01g22810	hypothetical protein	gene	hypothetical protein	chr1	12818202	12819174	-	CDS,promoter,downstream
28	LOC_Os04g48560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28758143	28760524	-	CDS,promoter,downstream
28	LOC_Os04g06330	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	3304788	3305267	-	CDS,promoter
28	LOC_Os08g29840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18335247	18339490	+	CDS,downstream
28	LOC_Os08g11090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6521287	6522741	-	CDS,promoter,downstream
28	LOC_Os05g28550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	16664396	16666732	+	CDS,promoter,downstream
28	LOC_Os07g28680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	16795795	16797060	-	CDS,promoter,downstream
28	LOC_Os06g25560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14942017	14942616	-	CDS,downstream
28	LOC_Os05g12620	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	7242743	7246772	+	CDS,promoter,downstream
28	LOC_Os12g12330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6777907	6778581	+	CDS,promoter,downstream
28	LOC_Os06g09150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	4604515	4605856	-	CDS,promoter,downstream
28	LOC_Os06g15640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8856882	8862471	+	CDS,promoter
28	LOC_Os07g44530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26584888	26588778	-	CDS,promoter,downstream
28	LOC_Os01g35620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19714424	19715215	-	CDS,promoter,downstream
28	LOC_Os11g32980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	19022385	19025928	-	CDS
28	LOC_Os04g15570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8460828	8466254	-	CDS,promoter,downstream
28	LOC_Os07g28000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16331982	16335345	+	CDS,promoter,downstream
28	LOC_Os05g17590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10102163	10104816	-	CDS,promoter,downstream
28	LOC_Os08g38760	expressed protein	gene	expressed protein	chr8	24501236	24512247	+	CDS
28	LOC_Os09g04740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2521416	2526005	-	CDS,downstream
28	LOC_Os12g13240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7367252	7367875	+	CDS,promoter,downstream
28	LOC_Os05g15000	hypothetical protein	gene	hypothetical protein	chr5	8508953	8509447	+	CDS
28	LOC_Os04g13650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7619259	7622240	+	CDS,promoter,downstream
28	LOC_Os07g31980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19017658	19020585	-	CDS,promoter,downstream
28	LOC_Os08g05180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2700845	2705266	-	CDS,promoter,downstream
28	LOC_Os06g34320	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	19958478	19965529	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os04g02130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	703206	703781	+	CDS,downstream
28	LOC_Os05g32940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	19232341	19233448	+	CDS,promoter,downstream
28	LOC_Os11g31920	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	18293517	18299672	-	CDS
28	LOC_Os12g17800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10186201	10190656	+	CDS,downstream
28	LOC_Os05g25820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	14973029	14974084	-	CDS,promoter,downstream
28	LOC_Os07g25110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14342528	14345228	-	CDS,promoter,downstream
28	LOC_Os03g38750	hypothetical protein	gene	hypothetical protein	chr3	21520808	21523509	-	CDS
28	LOC_Os03g33240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19016136	19018903	+	CDS,downstream
28	LOC_Os08g07000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	3906965	3909529	+	CDS,promoter,downstream
28	LOC_Os04g06690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3513817	3518517	+	CDS,promoter
28	LOC_Os04g04130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1901035	1902759	+	CDS,promoter,downstream
28	LOC_Os12g11720	verticillium wilt disease resistance protein precursor, putative	gene	verticillium wilt disease resistance protein precursor, putative	chr12	6355837	6358896	+	CDS
28	LOC_Os09g04400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2325792	2328121	+	CDS,promoter
28	LOC_Os01g39580	anthocyanin regulatory Lc protein, putative	gene	anthocyanin regulatory Lc protein, putative	chr1	22321024	22326326	+	CDS,promoter,downstream
28	LOC_Os08g20967	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12549298	12557867	-	CDS,downstream
28	LOC_Os11g18700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10583746	10587815	+	CDS,promoter,downstream
28	LOC_Os12g20169	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11750024	11757293	+	CDS,promoter,downstream
28	LOC_Os03g33460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19112918	19115900	-	CDS,promoter,downstream
28	LOC_Os07g40360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	24199141	24201134	+	CDS,promoter
28	LOC_Os09g21600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13077853	13080797	+	CDS,promoter,downstream
28	LOC_Os08g08450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4867552	4870743	+	CDS,promoter,downstream
28	LOC_Os02g40200	receptor-like protein kinase precursor, putative, expressed	gene	receptor-like protein kinase precursor, putative, expressed	chr2	24321245	24325422	+	CDS
28	LOC_Os08g03030	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	1349691	1356983	-	CDS,promoter,downstream
28	LOC_Os04g05180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2577886	2581474	-	CDS,downstream
28	LOC_Os05g14800	cycloartenol synthase, putative	gene	cycloartenol synthase, putative	chr5	8407245	8415908	-	CDS,promoter,downstream
28	LOC_Os06g21050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12159157	12163057	-	CDS,downstream
28	LOC_Os03g26260	NB-ARC domain containing protein	gene	NB-ARC domain containing protein	chr3	15014453	15021952	+	CDS,downstream
28	LOC_Os05g09100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5064991	5067863	-	CDS,promoter,downstream
28	LOC_Os02g16340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9297369	9297818	+	CDS,promoter,downstream
28	LOC_Os05g09170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5125254	5128940	-	CDS,downstream
28	LOC_Os07g28200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16463548	16471413	-	CDS,promoter
28	LOC_Os10g10730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5953292	5958012	+	CDS,downstream
28	LOC_Os03g41140	transposable element protein, putative, containing Pfam profile: PF04195, Transposase_28	gene	transposable element protein, putative, containing Pfam profile: PF04195, Transposase_28	chr3	22869393	22870423	-	CDS,promoter,downstream
28	LOC_Os01g38820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	21773508	21776004	-	CDS,promoter,downstream
28	LOC_Os04g05380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2685753	2688266	-	CDS,promoter,downstream
28	LOC_Os09g34880	basic region leucine zipper domain containing protein, expressed	gene	basic region leucine zipper domain containing protein, expressed	chr9	20326086	20330056	+	CDS
28	LOC_Os05g15080	hypothetical protein	gene	hypothetical protein	chr5	8563623	8564588	-	CDS,promoter,downstream
28	LOC_Os01g36310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20138103	20138570	-	CDS,promoter,downstream
28	LOC_Os12g22560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12732966	12734005	+	CDS,promoter,downstream
28	LOC_Os12g26640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15603163	15606730	+	CDS,promoter,downstream
28	LOC_Os11g32600	hypothetical protein	gene	hypothetical protein	chr11	18766149	18766655	-	CDS,promoter
28	LOC_Os10g40804	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	21862850	21865512	-	CDS,downstream
28	LOC_Os06g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11619379	11620166	-	CDS,downstream
28	LOC_Os10g24780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12667874	12668431	-	CDS,promoter
28	LOC_Os08g34440	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	21616729	21620637	-	CDS,promoter
28	LOC_Os06g34240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19934521	19937636	+	CDS,promoter
28	LOC_Os08g11540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6761136	6764008	-	CDS,promoter,downstream
28	LOC_Os02g47720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29164890	29168068	+	CDS,downstream
28	LOC_Os07g16620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9749357	9752672	-	CDS,promoter,downstream
28	LOC_Os10g26930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14094030	14096900	-	CDS,promoter,downstream
28	LOC_Os07g25630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14690477	14697397	+	CDS,promoter,downstream
28	LOC_Os07g13960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7976923	7978633	+	CDS,promoter,downstream
28	LOC_Os02g16960	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	9671765	9675730	-	CDS,promoter
28	LOC_Os05g16760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9545230	9546073	-	CDS,downstream
28	LOC_Os05g17010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9706375	9712110	+	CDS,promoter,downstream
28	LOC_Os12g27610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16245348	16248602	-	CDS,promoter
28	LOC_Os09g06810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3254409	3256860	+	CDS,downstream
28	LOC_Os05g24420	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	14048771	14049205	-	CDS,promoter,downstream
28	LOC_Os12g07930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4021672	4022509	-	CDS,promoter
28	LOC_Os11g27490	hypothetical protein	gene	hypothetical protein	chr11	15351511	15353311	+	CDS,promoter
28	LOC_Os12g01050	hypothetical protein	gene	hypothetical protein	chr12	27025	28438	-	CDS
28	LOC_Os12g37150	ribosomal RNA apurinic site specific lyase, putative	gene	ribosomal RNA apurinic site specific lyase, putative	chr12	22739342	22741152	+	CDS,promoter
28	LOC_Os06g17790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10316963	10318576	+	CDS,downstream
28	LOC_Os03g45480	hypothetical protein	gene	hypothetical protein	chr3	25665077	25667222	-	CDS,promoter,downstream
28	LOC_Os05g04480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	2067540	2070874	-	CDS,downstream
28	LOC_Os03g44070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	24765905	24777114	+	CDS
28	LOC_Os06g42580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25606592	25608177	+	CDS,promoter
28	LOC_Os08g08390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4834362	4839508	+	CDS,promoter
28	LOC_Os10g17390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8691194	8693204	+	CDS,promoter,downstream
28	LOC_Os08g20080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12034973	12036903	+	CDS,promoter,downstream
28	LOC_Os05g22680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12821108	12821955	-	CDS,promoter,downstream
28	LOC_Os10g07139	unknown	gene	unknown	chr10	3747781	3748136	+	CDS,promoter,downstream
28	LOC_Os04g32240	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr4	19148760	19150292	+	CDS,promoter
28	LOC_Os01g23090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	12990441	12993763	+	CDS
28	LOC_Os04g07710	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	4091481	4095902	+	CDS,promoter,downstream
28	LOC_Os01g23360	hypothetical protein	gene	hypothetical protein	chr1	13132397	13135123	-	CDS,promoter
28	LOC_Os07g44990	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	26836914	26839312	+	CDS,downstream
28	LOC_Os03g37690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20899893	20901377	+	CDS,promoter,downstream
28	LOC_Os04g30860	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr4	18265864	18271402	+	CDS,promoter,downstream
28	LOC_Os03g16640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	9182340	9183152	+	CDS,promoter,downstream
28	LOC_Os06g26190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15323219	15325452	-	CDS,promoter,downstream
28	LOC_Os06g24360	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14255163	14259385	-	CDS,promoter
28	LOC_Os03g42670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	23767073	23769416	+	CDS
28	LOC_Os05g25470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	14745789	14751889	-	CDS,promoter
28	LOC_Os11g17520	hypothetical protein	gene	hypothetical protein	chr11	9756016	9760086	-	CDS
28	LOC_Os01g03452	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	1385408	1393476	-	CDS,promoter
28	LOC_Os06g05460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	2463761	2468028	-	CDS,promoter
28	LOC_Os04g14550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8137812	8143250	-	CDS
28	LOC_Os07g15830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9193174	9195517	-	CDS,promoter,downstream
28	LOC_Os12g20260	hypothetical protein	gene	hypothetical protein	chr12	11819142	11820473	-	CDS,downstream
28	LOC_Os12g16600	hypothetical protein	gene	hypothetical protein	chr12	9494762	9496571	-	CDS,promoter
28	LOC_Os05g51930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29737715	29744645	-	CDS,promoter
28	LOC_Os01g08490	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	4195937	4197833	+	CDS,downstream
28	LOC_Os10g04220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1967290	1969752	+	CDS,promoter,downstream
28	LOC_Os12g31050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18631813	18635544	+	CDS
28	LOC_Os03g49340	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr3	28076932	28080015	-	CDS
28	LOC_Os06g33630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19577862	19578161	-	CDS,promoter,downstream
28	LOC_Os02g49490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30236532	30242891	+	CDS,promoter,downstream
28	LOC_Os09g24400	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	14499315	14502565	+	CDS,promoter,downstream
28	LOC_Os09g04040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2077070	2081438	-	CDS
28	LOC_Os11g22930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12717265	12722413	+	CDS,downstream
28	LOC_Os10g21430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10903707	10904353	-	CDS,promoter,downstream
28	LOC_Os06g31020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18045214	18051952	-	CDS,promoter,downstream
28	LOC_Os04g29350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17253216	17265177	-	CDS
28	LOC_Os06g33220	hypothetical protein	gene	hypothetical protein	chr6	19344488	19345128	+	CDS,downstream
28	LOC_Os04g37850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	22331746	22335540	+	CDS,downstream
28	LOC_Os08g08460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	4871054	4877999	-	CDS,promoter,downstream
28	LOC_Os08g07420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4162747	4168902	-	CDS
28	LOC_Os07g29030	hypothetical protein	gene	hypothetical protein	chr7	17023624	17026044	+	CDS,promoter,downstream
28	LOC_Os07g25570	hypothetical protein	gene	hypothetical protein	chr7	14657554	14659958	+	CDS,promoter,downstream
28	LOC_Os11g44670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	26539618	26542874	-	CDS,promoter
28	LOC_Os08g28990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	17735413	17741550	-	CDS,downstream
28	LOC_Os06g09780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	4978156	4979997	-	CDS,promoter,downstream
28	LOC_Os01g70030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	40512714	40517548	-	CDS,downstream
28	LOC_Os01g40230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	22697376	22704012	+	CDS,promoter
28	LOC_Os11g14360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	8058813	8060846	+	CDS,downstream
28	LOC_Os11g15110	nucleic acid binding protein, putative	gene	nucleic acid binding protein, putative	chr11	8500656	8501907	-	CDS,promoter,downstream
28	LOC_Os07g26800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15486975	15489813	+	CDS,promoter,downstream
28	LOC_Os12g26750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15671294	15673456	-	CDS,promoter,downstream
28	LOC_Os09g32780	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	19555014	19559812	+	CDS,promoter
28	LOC_Os05g42940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	24871863	24872231	+	CDS,promoter,downstream
28	LOC_Os07g34770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20826753	20833461	-	CDS
28	LOC_Os07g29590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17380245	17383567	-	CDS
28	LOC_Os01g73370	S-locus lectin protein kinase family protein, putative	gene	S-locus lectin protein kinase family protein, putative	chr1	42525867	42526337	-	CDS,promoter,downstream
28	LOC_Os12g17990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10330429	10331255	-	CDS,promoter,downstream
28	LOC_Os06g16320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9297392	9303352	-	CDS
28	LOC_Os04g40360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	23806988	23812891	-	CDS
28	LOC_Os01g08070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	3904249	3906429	+	CDS,promoter
28	LOC_Os06g32470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18876374	18881847	-	CDS,promoter,downstream
28	LOC_Os10g20480	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr10	10246240	10251606	-	CDS,three_prime_UTR,downstream
28	LOC_Os06g28430	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16176381	16177461	+	CDS,promoter,downstream
28	LOC_Os06g37830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22387370	22389896	+	CDS,downstream
28	LOC_Os11g38090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	22120221	22125925	-	CDS,promoter
28	LOC_Os03g33880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19348509	19349039	-	CDS,promoter
28	LOC_Os06g31950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	18568501	18573121	-	CDS,promoter
28	LOC_Os02g52050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	31848511	31855293	+	CDS,downstream
28	LOC_Os10g24650	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12598067	12600380	+	CDS,promoter,downstream
28	LOC_Os11g22500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12470793	12472000	-	CDS,promoter,downstream
28	LOC_Os12g12780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7044453	7047680	-	CDS
28	LOC_Os04g43110	hypothetical protein	gene	hypothetical protein	chr4	25338274	25338959	+	CDS,promoter,downstream
28	LOC_Os10g05040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	2459092	2463609	+	CDS,promoter
28	LOC_Os04g21740	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	12290950	12293602	+	CDS,downstream
28	LOC_Os03g26020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14908076	14911685	-	CDS,promoter
28	LOC_Os02g25660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15006738	15009845	+	CDS,promoter,downstream
28	LOC_Os12g24380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	13902675	13903589	-	CDS,promoter
28	LOC_Os06g35390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20626482	20628670	-	CDS,promoter
28	LOC_Os03g33177	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18977052	18978352	+	CDS,promoter,downstream
28	LOC_Os07g18270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10826831	10828604	-	CDS,promoter,downstream
28	LOC_Os11g47438	zinc knuckle family protein	gene	zinc knuckle family protein	chr11	28063229	28068272	-	CDS
28	LOC_Os08g18810	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11218598	11220831	+	CDS,promoter,downstream
28	LOC_Os09g35530	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	20415020	20419994	+	CDS,promoter,downstream
28	LOC_Os12g33720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20320532	20321130	-	CDS,promoter,downstream
28	LOC_Os10g26770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13932045	13935731	+	CDS,promoter
28	LOC_Os08g33045	expressed protein	gene	expressed protein	chr8	20519733	20523197	-	CDS,three_prime_UTR,promoter
28	LOC_Os07g28750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16826412	16828803	-	CDS,downstream
28	LOC_Os06g37520	zinc knuckle domain containing protein	gene	zinc knuckle domain containing protein	chr6	22208187	22208927	+	CDS,promoter
28	LOC_Os02g29750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17687942	17691811	-	CDS,promoter,downstream
28	LOC_Os03g35520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19683986	19685502	+	CDS,promoter,downstream
28	LOC_Os07g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12503421	12510725	-	CDS,promoter,downstream
28	LOC_Os11g22670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12574073	12581420	+	CDS,promoter,downstream
28	LOC_Os01g49980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	28717111	28722340	-	CDS,promoter,downstream
28	LOC_Os07g22800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	12863429	12865236	+	CDS,promoter,downstream
28	LOC_Os03g23210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13417216	13418474	-	CDS,promoter,downstream
28	LOC_Os11g11120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6146067	6147783	+	CDS,promoter,downstream
28	LOC_Os01g49870	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	28644151	28647381	+	CDS,downstream
28	LOC_Os11g30230	hypothetical protein	gene	hypothetical protein	chr11	17109242	17110227	+	CDS
28	LOC_Os02g07090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	3645734	3647724	+	CDS,promoter
28	LOC_Os06g37730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22344146	22347086	-	CDS,promoter,downstream
28	LOC_Os04g25510	hypothetical protein	gene	hypothetical protein	chr4	14785965	14786165	+	CDS,promoter,downstream
28	LOC_Os09g16340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9989624	9990765	+	CDS,promoter,downstream
28	LOC_Os07g17850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10563939	10566269	-	CDS
28	LOC_Os09g09500	lectin-like receptor kinase, putative	gene	lectin-like receptor kinase, putative	chr9	5119567	5121573	-	CDS
28	LOC_Os03g33380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19083122	19086403	+	CDS,promoter,downstream
28	LOC_Os01g66080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	38345668	38348753	+	CDS,promoter,downstream
28	LOC_Os01g27250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	15196439	15203957	-	CDS,promoter
28	LOC_Os07g47800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	28542471	28544780	-	CDS
28	LOC_Os12g33590	hypothetical protein	gene	hypothetical protein	chr12	20259328	20262399	+	CDS,promoter
28	LOC_Os04g13760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7669404	7670833	-	CDS,promoter,downstream
28	LOC_Os12g43060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26710780	26716787	+	CDS,promoter
28	LOC_Os05g01670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	397148	403303	-	CDS,downstream
28	LOC_Os08g28750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17582932	17589659	+	CDS,downstream
28	LOC_Os01g18700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10543947	10546124	-	CDS
28	LOC_Os09g01450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	334113	338636	-	CDS,promoter,downstream
28	LOC_Os05g07930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4296268	4298963	+	CDS
28	LOC_Os03g23150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13379519	13381038	+	CDS,promoter,downstream
28	LOC_Os08g20180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12103261	12108539	-	CDS,promoter
28	LOC_Os06g26260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15373216	15377050	+	CDS,promoter,downstream
28	LOC_Os07g27800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16219114	16222971	+	CDS,downstream
28	LOC_Os12g26150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15228273	15233942	+	CDS,promoter
28	LOC_Os03g19160	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr3	10738751	10743737	-	CDS
28	LOC_Os02g19570	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	11435644	11437342	-	CDS,promoter,downstream
28	LOC_Os07g05790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	2785583	2787424	+	CDS,promoter,downstream
28	LOC_Os09g07080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3435660	3438394	-	CDS,promoter,downstream
28	LOC_Os03g33870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19346243	19348367	+	CDS,promoter,downstream
28	LOC_Os04g18980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10532156	10544583	-	CDS,promoter,downstream
28	LOC_Os01g09600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	4931498	4937594	+	CDS,downstream
28	LOC_Os01g40010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	22565702	22573011	-	CDS,promoter
28	LOC_Os04g19950	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	11112626	11116867	+	CDS,downstream
28	LOC_Os03g61190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34743679	34747311	-	CDS,promoter
28	LOC_Os02g18970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	11083113	11086850	+	CDS
28	LOC_Os01g11310	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	6062479	6062934	-	CDS,promoter,downstream
28	LOC_Os08g28720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17562290	17563522	-	CDS
28	LOC_Os06g29540	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16926222	16927809	-	CDS,promoter,downstream
28	LOC_Os09g15880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9704395	9705944	-	CDS,promoter,downstream
28	LOC_Os03g30180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17221369	17223677	+	CDS,promoter,downstream
28	LOC_Os12g19890	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	11582991	11586515	-	CDS,promoter,downstream
28	LOC_Os06g02090	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	615415	617865	+	CDS,promoter,downstream
28	LOC_Os06g19080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	10848824	10851865	+	CDS
28	LOC_Os08g36130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	22760166	22764715	-	CDS,promoter,downstream
28	LOC_Os02g30160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17912237	17919538	+	CDS,promoter,downstream
28	LOC_Os11g16890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9363773	9365760	-	CDS,downstream
28	LOC_Os08g37120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	23457632	23460384	-	CDS
28	LOC_Os06g38160	legume lectins beta domain containing protein, putative	gene	legume lectins beta domain containing protein, putative	chr6	22597674	22600260	+	CDS,downstream
28	LOC_Os04g11920	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6535815	6538687	+	CDS,promoter,downstream
28	LOC_Os04g25890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15043539	15051364	-	CDS
28	LOC_Os10g19940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9929950	9931587	-	CDS,promoter,downstream
28	LOC_Os07g28740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16819232	16821288	-	CDS,promoter,downstream
28	LOC_Os06g42410	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	25488105	25491180	+	CDS,downstream
28	LOC_Os11g30020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16990370	16997970	-	CDS,promoter
28	LOC_Os01g34400	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	18971648	18973363	-	CDS,promoter,downstream
28	LOC_Os09g06220	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	2904168	2911471	-	CDS,downstream
28	LOC_Os04g25030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14421506	14427896	-	CDS,promoter,downstream
28	LOC_Os02g13210	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	gene	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	chr2	7039049	7042945	-	CDS,promoter
28	LOC_Os05g24330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14014516	14017674	-	CDS,promoter,downstream
28	LOC_Os12g16000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9111404	9116943	-	CDS,promoter
28	LOC_Os01g18920	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr1	10692303	10694890	-	CDS
28	LOC_Os11g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12324053	12329631	-	CDS,promoter
28	LOC_Os12g26900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15763121	15764797	-	CDS,promoter,downstream
28	LOC_Os05g27720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16083677	16088421	-	CDS,promoter
28	LOC_Os12g42270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	26189112	26195160	-	CDS
28	LOC_Os04g06360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3309903	3321958	+	CDS,promoter,downstream
28	LOC_Os01g59280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34267641	34271377	+	CDS,promoter,downstream
28	LOC_Os11g09530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5102718	5105154	-	CDS,promoter,downstream
28	LOC_Os11g19010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10833057	10833842	+	CDS,promoter,downstream
28	LOC_Os12g24600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14069453	14074754	+	CDS,downstream
28	LOC_Os07g28380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16589117	16591818	-	CDS
28	LOC_Os03g43750	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr3	24464682	24471689	+	five_prime_UTR,CDS,three_prime_UTR,downstream
28	LOC_Os07g09814	OsFBX221 - F-box domain containing protein, expressed	gene	OsFBX221 - F-box domain containing protein, expressed	chr7	5218439	5225722	+	three_prime_UTR
28	LOC_Os01g71520	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	41414294	41420449	-	CDS,downstream
28	LOC_Os02g27500	Leucine Rich Repeat family protein, expressed	gene	Leucine Rich Repeat family protein, expressed	chr2	16264148	16266679	-	CDS,downstream
28	LOC_Os10g30740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	15936709	15942759	-	CDS
28	LOC_Os08g08370	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	4822717	4828251	+	CDS
28	LOC_Os08g35290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22267361	22269174	-	CDS,promoter,downstream
28	LOC_Os02g20740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12255253	12258271	+	CDS,promoter,downstream
28	LOC_Os04g20600	hypothetical protein	gene	hypothetical protein	chr4	11514223	11514975	+	CDS,promoter,downstream
28	LOC_Os01g32020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17530731	17533091	+	CDS,downstream
28	LOC_Os02g45020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	27278372	27281410	-	CDS,promoter,downstream
28	LOC_Os10g21510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10942797	10945702	+	CDS,promoter
28	LOC_Os03g21770	phosphoenolpyruvate carboxylase kinase, putative	gene	phosphoenolpyruvate carboxylase kinase, putative	chr3	12439381	12441428	+	CDS,promoter,downstream
28	LOC_Os02g23828	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13776695	13779410	+	CDS,promoter,downstream
28	LOC_Os12g19220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	11149626	11151784	+	CDS,promoter,downstream
28	LOC_Os06g24630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14459408	14463321	+	CDS
28	LOC_Os10g14840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7787190	7788287	+	CDS,downstream
28	LOC_Os01g36960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	20611440	20615662	-	CDS,promoter
28	LOC_Os04g51220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30164304	30165239	+	CDS,promoter,downstream
28	LOC_Os11g27810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15545478	15548953	+	CDS,downstream
28	LOC_Os05g20680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12124154	12127659	-	CDS,promoter,downstream
28	LOC_Os02g35280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	21197459	21199776	+	CDS,promoter,downstream
28	LOC_Os04g25454	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14737822	14750190	-	CDS
28	LOC_Os09g33610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	19841686	19850769	-	CDS
28	LOC_Os02g17930	hypothetical protein	gene	hypothetical protein	chr2	10382365	10384763	-	CDS
28	LOC_Os06g25730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15025319	15032223	+	CDS,promoter,downstream
28	LOC_Os06g17750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10295804	10302519	-	CDS,promoter,downstream
28	LOC_Os07g40330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24183037	24185730	-	CDS,downstream
28	LOC_Os01g39550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	22294688	22298910	+	CDS,downstream
28	LOC_Os01g51830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	29796502	29799524	-	CDS,promoter
28	LOC_Os06g27720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15694778	15701915	-	CDS,promoter,downstream
28	LOC_Os01g01330	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr1	160365	163107	-	CDS,promoter
28	LOC_Os10g22250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	11442166	11444691	+	CDS,promoter
28	LOC_Os08g08720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5050916	5053240	+	CDS,promoter
28	LOC_Os07g31990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	19026524	19028978	+	CDS,downstream
28	LOC_Os04g16390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8902001	8903635	+	CDS,promoter,downstream
28	LOC_Os04g16410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8913261	8915894	-	CDS,promoter,downstream
28	LOC_Os04g38250	hypothetical protein	gene	hypothetical protein	chr4	22574334	22575234	-	CDS,promoter
28	LOC_Os08g35970	transposon protein, putative, Mutator sub-class	gene	transposon protein, putative, Mutator sub-class	chr8	22677339	22680522	+	CDS,downstream
28	LOC_Os09g03800	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	1924653	1927064	+	CDS,promoter
28	LOC_Os06g23720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13862323	13864047	-	CDS,downstream
28	LOC_Os06g30700	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	17796503	17810427	-	CDS
28	LOC_Os06g30560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	17679994	17683087	+	CDS,promoter
28	LOC_Os04g31984	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18980913	18985809	-	CDS
28	LOC_Os07g28770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16839131	16842775	-	CDS,promoter,downstream
28	LOC_Os07g22570	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	12697828	12699673	-	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os08g28140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17168992	17170557	+	CDS,promoter,downstream
28	LOC_Os11g35920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20626191	20636506	-	CDS,promoter
28	LOC_Os11g36860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21275484	21278419	-	CDS,downstream
28	LOC_Os09g10330	hypothetical protein	gene	hypothetical protein	chr9	5624475	5625305	+	CDS,promoter,downstream
28	LOC_Os09g04550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2424674	2429409	+	CDS,promoter,downstream
28	LOC_Os06g47170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28601041	28604023	+	CDS,promoter,downstream
28	LOC_Os03g60010	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr3	34125302	34128803	+	CDS,three_prime_UTR,promoter,downstream
28	LOC_Os07g45039	hypothetical protein	gene	hypothetical protein	chr7	26871924	26872988	+	CDS,promoter
28	LOC_Os12g07770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3917238	3920109	+	CDS,promoter
28	LOC_Os12g17380	hypothetical protein	gene	hypothetical protein	chr12	9951190	9952215	+	CDS,promoter,downstream
28	LOC_Os11g18440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10396652	10397128	+	CDS,promoter,downstream
28	LOC_Os01g13250	sarcoma antigen NY-SAR-91, putative, expressed	gene	sarcoma antigen NY-SAR-91, putative, expressed	chr1	7384895	7387164	+	CDS,promoter
28	LOC_Os09g03980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2042701	2046221	+	CDS,downstream
28	LOC_Os02g26450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	15523769	15526038	-	CDS,downstream
28	LOC_Os12g13680	hypothetical protein	gene	hypothetical protein	chr12	7715938	7716552	+	CDS,promoter,downstream
28	LOC_Os04g02950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1175089	1178244	+	CDS,downstream
28	LOC_Os07g17109	unknown	gene	unknown	chr7	10053290	10054379	-	CDS,promoter,downstream
28	LOC_Os05g19450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11300473	11302648	-	CDS,promoter,downstream
28	LOC_Os08g17090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10457592	10460687	+	CDS,downstream
28	LOC_Os05g45160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26155913	26159953	+	CDS
28	LOC_Os07g16000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9320160	9326007	-	CDS,promoter,downstream
28	LOC_Os01g19600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11104195	11107524	-	CDS,promoter
28	LOC_Os09g12615	expressed protein	gene	expressed protein	chr9	7227476	7228197	-	CDS,three_prime_UTR,promoter
28	LOC_Os10g24250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12351892	12353327	-	CDS,promoter,downstream
28	LOC_Os12g29860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17826366	17833637	+	CDS,promoter,downstream
28	LOC_Os08g13870	S-locus lectin protein kinase family protein, putative	gene	S-locus lectin protein kinase family protein, putative	chr8	8281966	8284338	-	CDS
28	LOC_Os04g03950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1797590	1800516	-	CDS,promoter,downstream
28	LOC_Os10g42580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	22878934	22880899	-	CDS,promoter,downstream
28	LOC_Os04g18730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10379045	10387701	+	CDS,promoter,downstream
28	LOC_Os01g74400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	43089505	43091373	-	CDS,downstream
28	LOC_Os10g16520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8164444	8166216	+	CDS,downstream
28	LOC_Os12g09810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5195748	5197045	-	CDS,promoter
28	LOC_Os12g09780	hypothetical protein	gene	hypothetical protein	chr12	5180761	5182319	-	CDS
28	LOC_Os09g02760	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	1247567	1251789	+	CDS,downstream
28	LOC_Os06g24440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14318274	14324852	+	CDS,promoter,downstream
28	LOC_Os08g41070	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	25956137	25963972	-	CDS,downstream
28	LOC_Os03g03210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	1362826	1367570	+	CDS,promoter,downstream
28	LOC_Os06g33770	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	19646201	19647091	+	CDS,promoter,downstream
28	LOC_Os06g31420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18283911	18289491	+	CDS,promoter,downstream
28	LOC_Os03g31620	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	18044799	18049092	+	CDS,downstream
28	LOC_Os04g13240	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	7326554	7330574	-	CDS,promoter
28	LOC_Os04g12060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6622651	6626405	+	CDS,promoter
28	LOC_Os02g29670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17655544	17658453	+	CDS,promoter,downstream
28	LOC_Os09g24110	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14326861	14327613	-	three_prime_UTR,promoter,downstream
28	LOC_Os12g35200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21370018	21370854	-	CDS,promoter,downstream
28	LOC_Os11g04780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	2033347	2034735	-	CDS
28	LOC_Os06g11110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	5820541	5826468	-	CDS,downstream
28	LOC_Os10g15250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8010735	8017210	-	CDS,downstream
28	LOC_Os07g25349	unknown	gene	unknown	chr7	14479794	14480874	-	CDS,promoter,downstream
28	LOC_Os07g25760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	14798800	14804295	-	CDS,downstream
28	LOC_Os12g27600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16241455	16244617	-	CDS,promoter,downstream
28	LOC_Os09g07960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4085082	4092146	-	CDS,promoter
28	LOC_Os04g04400	FAR1 family protein	gene	FAR1 family protein	chr4	2088346	2092467	+	CDS,promoter,downstream
28	LOC_Os11g27050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15107292	15112208	+	CDS,downstream
28	LOC_Os10g12530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6982230	6987724	-	CDS,promoter,downstream
28	LOC_Os09g14690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8718941	8724369	+	CDS
28	LOC_Os11g35762	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20527191	20531827	+	CDS,promoter,downstream
28	LOC_Os11g41190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24225586	24231672	+	CDS
28	LOC_Os04g47100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	27780682	27786640	+	CDS
28	LOC_Os01g09212	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	4643061	4643696	-	CDS,promoter,downstream
28	LOC_Os11g25120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	13846115	13847715	-	CDS,downstream
28	LOC_Os11g20010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11507006	11510268	-	CDS,promoter
28	LOC_Os04g06540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3432720	3434092	+	CDS,promoter,downstream
28	LOC_Os04g47600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	28059900	28064122	-	CDS
28	LOC_Os09g08510	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr9	4438508	4440409	-	CDS,promoter
28	LOC_Os03g20080	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	11310242	11314680	-	CDS
28	LOC_Os05g44870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26012208	26014277	-	CDS,promoter,downstream
28	LOC_Os05g46650	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	26939006	26939446	-	CDS,promoter,downstream
28	LOC_Os03g59410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	33810373	33816527	+	CDS,downstream
28	LOC_Os09g04530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2414665	2418187	+	CDS,downstream
28	LOC_Os05g27460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15912586	15913709	-	CDS,promoter,downstream
28	LOC_Os09g27135	expressed protein	gene	expressed protein	chr9	16498215	16500585	-	CDS,promoter,downstream
28	LOC_Os08g09540	hypothetical protein	gene	hypothetical protein	chr8	5525671	5526102	-	CDS,promoter,downstream
28	LOC_Os12g42460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26351256	26353811	-	CDS,promoter,downstream
28	LOC_Os06g09480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	4825817	4829152	+	CDS,promoter
28	LOC_Os02g21610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12834633	12835142	+	CDS,promoter,downstream
28	LOC_Os01g39464	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	22227210	22232213	+	CDS,promoter
28	LOC_Os02g13230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	7050459	7051274	+	CDS,promoter,downstream
28	LOC_Os06g37890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22433707	22438418	-	CDS,downstream
28	LOC_Os12g24830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14245156	14248476	-	CDS,promoter,downstream
28	LOC_Os03g35400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19628358	19631221	-	CDS,promoter,downstream
28	LOC_Os07g18800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11128561	11130060	-	CDS,promoter,downstream
28	LOC_Os08g27460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16755160	16763291	+	CDS,promoter
28	LOC_Os07g17090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10047330	10050297	-	CDS,promoter,downstream
28	LOC_Os07g07830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	3930538	3932792	+	CDS,promoter
28	LOC_Os02g44136	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	26703760	26711648	-	CDS
28	LOC_Os06g09470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	4818447	4823823	+	CDS,promoter,downstream
28	LOC_Os09g07130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3481721	3484685	+	CDS,downstream
28	LOC_Os06g31690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18415365	18416572	-	CDS
28	LOC_Os06g34310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19955919	19960135	+	CDS,promoter,downstream
28	LOC_Os06g35220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20545708	20551299	+	CDS,promoter,downstream
28	LOC_Os05g24730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14275711	14281625	-	CDS,downstream
28	LOC_Os04g11480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6275212	6278014	-	CDS,downstream
28	LOC_Os06g22780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13261752	13262633	-	CDS,promoter,downstream
28	LOC_Os01g36910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20564824	20568985	-	CDS,promoter
28	LOC_Os07g01360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	229588	231835	-	CDS,promoter
28	LOC_Os03g26610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	15202703	15205709	+	CDS,promoter
28	LOC_Os02g16200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9207188	9210329	-	CDS,promoter,downstream
28	LOC_Os01g43010	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	24490881	24496851	+	CDS
28	LOC_Os07g18520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10958094	10961188	-	CDS,promoter,downstream
28	LOC_Os12g16860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9664582	9669442	+	CDS,promoter,downstream
28	LOC_Os08g41260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26050280	26053589	-	CDS,promoter
28	LOC_Os08g19930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11934263	11937888	+	CDS,promoter,downstream
28	LOC_Os07g24400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13891824	13895995	+	CDS,promoter,downstream
28	LOC_Os08g15860	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	9645187	9645642	-	CDS,promoter,downstream
28	LOC_Os09g11540	hypothetical protein	gene	hypothetical protein	chr9	6443860	6444300	-	CDS,promoter,downstream
28	LOC_Os06g16690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9617814	9620852	+	CDS,promoter,downstream
28	LOC_Os11g39699	unknown	gene	unknown	chr11	23181780	23182738	+	CDS,downstream
28	LOC_Os02g22670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13501708	13503432	+	CDS,promoter
28	LOC_Os09g09890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	5375584	5376696	+	CDS,promoter,downstream
28	LOC_Os10g13740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7483216	7485554	-	CDS,promoter,downstream
28	LOC_Os03g44460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25019752	25020822	-	CDS,promoter,downstream
28	LOC_Os05g26560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15371867	15372847	+	CDS,promoter,downstream
28	LOC_Os04g59390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	35118344	35123962	-	CDS,promoter
28	LOC_Os08g16750	hypothetical protein	gene	hypothetical protein	chr8	10244311	10244611	-	CDS,promoter,downstream
28	LOC_Os04g10610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	5754051	5758206	-	CDS,promoter,downstream
28	LOC_Os02g21100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	12509464	12515070	+	CDS
28	LOC_Os09g02600	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	1109848	1115804	-	CDS,promoter
28	LOC_Os07g15740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9137274	9141492	+	CDS,promoter,downstream
28	LOC_Os09g12110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6837171	6843204	-	CDS,promoter
28	LOC_Os01g27060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	15092985	15095378	+	CDS,promoter,downstream
28	LOC_Os09g19600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	11718719	11721661	-	CDS,promoter,downstream
28	LOC_Os10g32400	PsbP, putative, expressed	gene	PsbP, putative, expressed	chr10	16910228	16918471	-	five_prime_UTR,CDS,promoter,downstream
28	LOC_Os06g22790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13262975	13265834	-	CDS,promoter,downstream
28	LOC_Os09g06250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2936672	2938345	+	CDS,promoter,downstream
28	LOC_Os06g16890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	9787144	9793805	+	CDS,promoter,downstream
28	LOC_Os10g21730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	11081824	11085474	+	CDS,downstream
28	LOC_Os09g02870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1342927	1347922	+	CDS,promoter
28	LOC_Os10g08650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4704507	4706604	-	CDS
28	LOC_Os02g24950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14457745	14461411	-	CDS
28	LOC_Os07g22620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12730528	12735634	-	CDS,promoter
28	LOC_Os08g26920	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr8	16412461	16420767	+	CDS,promoter,downstream
28	LOC_Os04g19350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10759221	10760802	+	CDS,downstream
28	LOC_Os11g09200	expressed protein	gene	expressed protein	chr11	4930463	4933361	+	CDS,downstream
28	LOC_Os05g20210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11833686	11835749	-	CDS,promoter,downstream
28	LOC_Os10g22260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11446234	11449152	-	CDS,downstream
28	LOC_Os06g39950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23759287	23763196	+	CDS,promoter,downstream
28	LOC_Os05g16810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9575524	9578176	-	CDS,promoter
28	LOC_Os05g16800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9568368	9573565	-	CDS,promoter,downstream
28	LOC_Os04g16110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8740936	8743874	+	CDS,promoter,downstream
28	LOC_Os01g28750	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16103719	16106040	+	CDS,downstream
28	LOC_Os01g62320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	36067676	36072126	+	CDS,promoter,downstream
28	LOC_Os02g39190	hypothetical protein	gene	hypothetical protein	chr2	23667975	23670671	-	CDS,promoter
28	LOC_Os07g23050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13003719	13007477	-	CDS,promoter,downstream
28	LOC_Os10g37940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20248559	20254170	+	CDS
28	LOC_Os03g34054	unknown	gene	unknown	chr3	19418790	19419314	-	CDS,promoter
28	LOC_Os04g05880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3018987	3032115	-	CDS,promoter,downstream
28	LOC_Os12g10070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5330506	5333653	-	CDS,promoter,downstream
28	LOC_Os12g39060	hypothetical protein	gene	hypothetical protein	chr12	23995614	23995970	+	CDS,promoter
28	LOC_Os07g18770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11099170	11103213	-	CDS
28	LOC_Os10g17470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8734081	8737407	+	CDS,promoter,downstream
28	LOC_Os09g13320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7678984	7680988	-	CDS,promoter
28	LOC_Os12g05460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	2500495	2502244	-	CDS,promoter,downstream
28	LOC_Os05g42410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	24776551	24780343	+	CDS,downstream
28	LOC_Os06g21800	hypothetical protein	gene	hypothetical protein	chr6	12597619	12598716	+	CDS
28	LOC_Os06g38170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22600739	22602679	+	CDS,promoter,downstream
28	LOC_Os03g45030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25411658	25417130	+	CDS,promoter,downstream
28	LOC_Os11g23850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13033572	13034666	-	CDS,promoter,downstream
28	LOC_Os05g24110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13848290	13849936	+	CDS,promoter,downstream
28	LOC_Os07g17830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10544378	10544923	-	CDS,promoter,downstream
28	LOC_Os01g63380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	36726704	36729360	+	CDS
28	LOC_Os11g26430	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14671152	14671910	-	CDS,promoter
28	LOC_Os07g22420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12596881	12603169	-	CDS,promoter,downstream
28	LOC_Os09g03960	expressed protein	gene	expressed protein	chr9	2028410	2036407	-	three_prime_UTR,downstream
28	LOC_Os11g23232	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12926921	12927826	-	CDS,promoter,downstream
28	LOC_Os01g62340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36075029	36078233	-	CDS,promoter
28	LOC_Os02g13920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7578016	7579076	+	CDS,promoter
28	LOC_Os10g24160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12306953	12309927	+	CDS,promoter,downstream
28	LOC_Os06g38019	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22477620	22478444	-	CDS,promoter,downstream
28	LOC_Os10g06990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3636053	3639747	+	CDS,promoter,downstream
28	LOC_Os02g30390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18093017	18096582	-	CDS
28	LOC_Os10g16480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8145673	8152422	-	CDS,promoter,downstream
28	LOC_Os04g19650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10956460	10957254	+	CDS,promoter,downstream
28	LOC_Os10g20570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10295310	10299547	-	CDS,promoter,downstream
28	LOC_Os11g09750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5201710	5205126	-	CDS,downstream
28	LOC_Os03g42150	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	23453304	23456038	-	CDS,promoter,downstream
28	LOC_Os01g05320	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	2503388	2509703	-	CDS
28	LOC_Os12g31980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19245823	19249124	-	CDS,downstream
28	LOC_Os07g25640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14697865	14701061	-	CDS,promoter
28	LOC_Os11g22620	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr11	12542923	12547398	-	CDS,promoter,downstream
28	LOC_Os09g06820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3260024	3262925	-	CDS,promoter
28	LOC_Os08g13860	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr8	8274923	8279312	-	CDS,promoter
28	LOC_Os07g15200	hypothetical protein	gene	hypothetical protein	chr7	8759198	8760616	-	CDS,promoter,downstream
28	LOC_Os04g08230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4386012	4389267	-	CDS,promoter,downstream
28	LOC_Os10g20750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10443230	10448822	-	CDS,promoter,downstream
28	LOC_Os05g23150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13146185	13152918	+	CDS,downstream
28	LOC_Os09g31319	unknown	gene	unknown	chr9	18831048	18832707	+	CDS,downstream
28	LOC_Os02g15480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8669169	8671062	+	CDS,promoter
28	LOC_Os08g23620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14291249	14297233	+	CDS,promoter
28	LOC_Os09g22170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13418496	13419538	-	CDS,promoter,downstream
28	LOC_Os03g09830	expressed protein	gene	expressed protein	chr3	4888494	4891259	+	CDS,three_prime_UTR
28	LOC_Os02g31000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	18509668	18512734	-	CDS,promoter
28	LOC_Os04g08120	hypothetical protein	gene	hypothetical protein	chr4	4326337	4327514	-	CDS
28	LOC_Os09g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6514815	6519248	-	CDS,promoter,downstream
28	LOC_Os09g35950	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	20696949	20701172	+	CDS,promoter,downstream
28	LOC_Os11g23760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12972218	12978754	+	CDS,promoter
28	LOC_Os12g22170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12487312	12490762	-	CDS,promoter,downstream
28	LOC_Os10g11400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6334504	6338724	-	CDS,promoter,downstream
28	LOC_Os09g23870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	14229942	14232417	+	CDS,promoter,downstream
28	LOC_Os01g16480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9351425	9358376	+	CDS,downstream
28	LOC_Os07g20480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11825062	11827016	-	CDS,promoter,downstream
28	LOC_Os09g29730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	18077362	18080517	-	CDS,promoter
28	LOC_Os01g50080	MDR-like ABC transporter, putative, expressed	gene	MDR-like ABC transporter, putative, expressed	chr1	28773236	28779320	+	CDS,three_prime_UTR,downstream
28	LOC_Os11g30730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17426485	17428278	+	CDS,promoter,downstream
28	LOC_Os04g01180	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	136276	137586	-	CDS,promoter,downstream
28	LOC_Os07g29550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17347785	17352545	+	CDS,promoter
28	LOC_Os01g02540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	833939	838111	+	CDS,promoter,downstream
28	LOC_Os06g20450	hypothetical protein	gene	hypothetical protein	chr6	11746557	11746873	+	CDS,downstream
28	LOC_Os08g22620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13605304	13610001	+	CDS,promoter
28	LOC_Os01g55660	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	32064445	32068802	-	CDS,promoter
28	LOC_Os09g17200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	10551882	10559000	-	CDS
28	LOC_Os01g64080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	37221675	37227965	-	CDS,promoter,downstream
28	LOC_Os08g16340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9965411	9968921	-	CDS,downstream
28	LOC_Os05g52090	hypothetical protein	gene	hypothetical protein	chr5	29851929	29852549	-	CDS,promoter,downstream
28	LOC_Os08g01480	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr8	295908	297367	-	CDS
28	LOC_Os06g38050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22495596	22498838	+	CDS,downstream
28	LOC_Os07g29010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17016114	17017685	+	CDS,promoter
28	LOC_Os08g26930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16427745	16430860	+	CDS,promoter,downstream
28	LOC_Os11g38550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22376375	22378282	-	CDS,promoter,downstream
28	LOC_Os01g59260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	34249172	34252459	-	CDS,promoter
28	LOC_Os10g33560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	17624011	17627562	-	CDS,promoter,downstream
28	LOC_Os04g55890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	33096389	33100963	+	CDS,promoter,downstream
28	LOC_Os10g15260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8021294	8022296	-	CDS,promoter,downstream
28	LOC_Os04g01850	hypothetical protein	gene	hypothetical protein	chr4	536365	536857	+	CDS,promoter,downstream
28	LOC_Os03g35830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19848062	19854830	-	CDS,promoter,downstream
28	LOC_Os10g32124	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16802985	16811200	-	CDS,promoter,downstream
28	LOC_Os08g28900	OsRR8  type-A response regulator, expressed	gene	OsRR8  type-A response regulator, expressed	chr8	17675197	17675978	+	CDS,promoter,downstream
28	LOC_Os08g18770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11200780	11205653	-	CDS,promoter,downstream
28	LOC_Os10g17230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8594407	8597164	+	CDS,promoter,downstream
28	LOC_Os10g12280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6847626	6850551	-	CDS,promoter,downstream
28	LOC_Os07g47610	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr7	28461683	28466836	-	CDS
28	LOC_Os03g35560	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	19706928	19712245	+	CDS,promoter
28	LOC_Os03g36370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20164633	20168885	+	CDS,promoter,downstream
28	LOC_Os11g23238	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12937678	12938709	-	CDS,promoter,downstream
28	LOC_Os09g13310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7674863	7676077	+	CDS,promoter,downstream
28	LOC_Os04g47740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28138103	28144026	-	CDS,promoter,downstream
28	LOC_Os10g16750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8270182	8275342	-	CDS,downstream
28	LOC_Os03g35810	hypothetical protein	gene	hypothetical protein	chr3	19845042	19845778	-	CDS,promoter,downstream
28	LOC_Os02g30570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	18181629	18184765	+	CDS
28	LOC_Os05g03280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	1328512	1331744	+	CDS,promoter,downstream
28	LOC_Os01g29530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16550813	16556786	-	CDS,promoter,downstream
28	LOC_Os05g33750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	19815614	19820473	-	CDS,promoter,downstream
28	LOC_Os02g16140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9183675	9185705	+	CDS,downstream
28	LOC_Os04g18680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10331143	10332931	+	CDS,promoter,downstream
28	LOC_Os09g19580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	11713232	11714215	+	CDS,downstream
28	LOC_Os11g15080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8480169	8484463	-	CDS,promoter,downstream
28	LOC_Os11g12060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6708356	6712807	-	CDS,promoter,downstream
28	LOC_Os04g14560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8148345	8160452	-	CDS
28	LOC_Os04g18750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10393067	10404662	-	CDS,promoter,downstream
28	LOC_Os02g05220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2497920	2503909	+	CDS,promoter,downstream
28	LOC_Os06g22890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13365401	13368654	-	CDS,downstream
28	LOC_Os02g01950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	518032	522644	+	CDS,downstream
28	LOC_Os08g12880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7642557	7645307	+	CDS,downstream
28	LOC_Os07g29210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17104372	17104962	-	CDS,promoter,downstream
28	LOC_Os02g18064	expressed protein	gene	expressed protein	chr2	10483366	10488687	+	three_prime_UTR,promoter
28	LOC_Os05g26240	PROLM1 - Prolamin precursor, expressed	gene	PROLM1 - Prolamin precursor, expressed	chr5	15208852	15209470	+	three_prime_UTR,promoter,downstream
28	LOC_Os12g10050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5321142	5324477	+	CDS,promoter,downstream
28	LOC_Os06g45530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	27540440	27543311	-	CDS,promoter,downstream
28	LOC_Os08g05150	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	2665441	2669682	-	CDS,promoter
28	LOC_Os04g23370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13351589	13354608	+	CDS,downstream
28	LOC_Os04g57570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	34067304	34078295	-	CDS,downstream
28	LOC_Os06g35360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	20616043	20619276	-	CDS
28	LOC_Os02g28010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16577545	16583727	-	CDS,downstream
28	LOC_Os11g32440	hypothetical protein	gene	hypothetical protein	chr11	18686926	18687560	+	CDS,promoter
28	LOC_Os09g20250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	12132094	12136417	+	CDS
28	LOC_Os07g25920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14877728	14878866	-	CDS,promoter,downstream
28	LOC_Os09g09070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4846030	4847437	-	CDS,promoter,downstream
28	LOC_Os12g06760	DEFL17 - Defensin and Defensin-like DEFL family	gene	DEFL17 - Defensin and Defensin-like DEFL family	chr12	3286850	3287385	+	CDS,promoter,downstream
28	LOC_Os04g10880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5894491	5897891	-	CDS,promoter
28	LOC_Os01g29020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16247370	16248992	-	CDS,promoter,downstream
28	LOC_Os05g22850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12911044	12912177	+	CDS,promoter,downstream
28	LOC_Os04g07840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4168500	4169480	-	CDS,promoter,downstream
28	LOC_Os05g29110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17031672	17037543	-	CDS,promoter,downstream
28	LOC_Os06g19930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11411055	11415473	-	CDS,downstream
28	LOC_Os11g05840	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr11	2708913	2720179	-	CDS
28	LOC_Os04g31590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	18714501	18717845	+	CDS,downstream
28	LOC_Os01g11680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	6297944	6300397	-	CDS,downstream
28	LOC_Os09g07190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3522247	3523032	+	CDS,promoter,downstream
28	LOC_Os02g25350	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14771289	14772413	+	CDS,promoter,downstream
28	LOC_Os03g41000	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	22785372	22792432	-	CDS
28	LOC_Os01g41580	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	23544508	23545893	-	CDS,downstream
28	LOC_Os04g11990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	6571370	6574816	-	CDS,downstream
28	LOC_Os05g43020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24919339	24922280	-	CDS,promoter,downstream
28	LOC_Os06g24420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14300913	14309736	+	CDS,downstream
28	LOC_Os08g10850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6386791	6390016	-	CDS,promoter,downstream
28	LOC_Os02g38520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23285504	23290910	+	CDS,downstream
28	LOC_Os09g01720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	505489	507451	-	CDS,promoter,downstream
28	LOC_Os08g09329	unknown	gene	unknown	chr8	5406474	5407355	-	CDS,downstream
28	LOC_Os04g25120	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	14498307	14502671	+	CDS
28	LOC_Os11g19910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11457603	11462016	-	CDS,promoter,downstream
28	LOC_Os07g22050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12325536	12327709	+	CDS,downstream
28	LOC_Os12g03930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1627755	1628672	+	CDS,promoter,downstream
28	LOC_Os03g27870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	16007374	16013859	-	CDS,promoter
28	LOC_Os01g28000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15649279	15660314	+	CDS,downstream
28	LOC_Os05g40470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23706663	23708356	-	CDS,downstream
28	LOC_Os11g30080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17034229	17036674	+	CDS,promoter
28	LOC_Os02g36800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	22187498	22193431	+	CDS,promoter,downstream
28	LOC_Os08g20290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	12185988	12189300	-	CDS,promoter,downstream
28	LOC_Os08g28350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17292575	17301251	-	CDS,promoter
28	LOC_Os02g24000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13906936	13908560	+	CDS,promoter
28	LOC_Os08g14790	hypothetical protein	gene	hypothetical protein	chr8	8894378	8894797	+	CDS,promoter,downstream
28	LOC_Os09g02930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1374529	1376209	-	CDS,promoter,downstream
28	LOC_Os02g16930	hypothetical protein	gene	hypothetical protein	chr2	9647156	9647428	-	CDS,promoter,downstream
28	LOC_Os05g20620	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	12093857	12102274	+	three_prime_UTR,downstream
28	LOC_Os04g07640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4055383	4057312	+	CDS,promoter,downstream
28	LOC_Os10g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11693819	11699974	+	CDS
28	LOC_Os05g36230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	21416675	21419294	+	CDS,promoter,downstream
28	LOC_Os08g08350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	4793167	4798202	-	CDS,promoter,downstream
28	LOC_Os07g34450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20655624	20658841	+	CDS
28	LOC_Os12g23250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13145482	13148813	-	CDS,promoter,downstream
28	LOC_Os07g36010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	21540348	21549926	+	CDS
28	LOC_Os10g04740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2264948	2270213	-	CDS,promoter,downstream
28	LOC_Os06g28570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16253841	16254297	-	CDS,promoter,downstream
28	LOC_Os07g24770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14078498	14085230	-	CDS,downstream
28	LOC_Os12g27870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16427411	16432089	-	CDS,downstream
28	LOC_Os01g36260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20092972	20099085	-	CDS
28	LOC_Os01g25679	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14554672	14558949	-	CDS,promoter,downstream
28	LOC_Os02g08250	hypothetical protein	gene	hypothetical protein	chr2	4380623	4381918	+	CDS,promoter,downstream
28	LOC_Os10g09270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5026935	5030356	-	CDS,promoter,downstream
28	LOC_Os12g24920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	14307348	14311873	-	CDS,promoter,downstream
28	LOC_Os12g15050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8589377	8590915	+	CDS,downstream
28	LOC_Os03g41700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	23165612	23168572	-	CDS,promoter
28	LOC_Os02g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11916547	11917740	+	CDS,promoter,downstream
28	LOC_Os12g41040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	25358610	25369895	-	CDS
28	LOC_Os10g12630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7054351	7060092	+	CDS,promoter,downstream
28	LOC_Os04g34560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	20741169	20742450	+	CDS,downstream
28	LOC_Os11g43080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25516615	25519550	-	CDS,promoter
28	LOC_Os02g17130	hypothetical protein	gene	hypothetical protein	chr2	9810025	9810805	-	CDS,promoter,downstream
28	LOC_Os07g23540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13293816	13304697	+	CDS,downstream
28	LOC_Os06g21180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12236621	12242813	+	CDS
28	LOC_Os03g37554	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	20825078	20832246	-	CDS
28	LOC_Os10g20794	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10476433	10479734	+	CDS,downstream
28	LOC_Os02g21400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12702399	12709674	+	CDS,downstream
28	LOC_Os07g26420	hypothetical protein	gene	hypothetical protein	chr7	15183587	15186310	+	CDS,promoter
28	LOC_Os04g14900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8378405	8380616	-	CDS
28	LOC_Os04g16210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8795864	8798042	-	CDS,promoter,downstream
28	LOC_Os08g28500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17394429	17400089	+	CDS,promoter,downstream
28	LOC_Os09g22380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	13521536	13522892	+	CDS,downstream
28	LOC_Os01g31280	hypothetical protein	gene	hypothetical protein	chr1	17111654	17112213	-	CDS,promoter,downstream
28	LOC_Os08g23340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14089356	14093042	+	CDS,promoter
28	LOC_Os09g06979	unknown	gene	unknown	chr9	3384083	3385701	+	CDS,promoter,downstream
28	LOC_Os04g16670	hypothetical protein	gene	hypothetical protein	chr4	9067299	9067927	-	CDS,promoter,downstream
28	LOC_Os06g28750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	16370400	16377341	-	CDS,promoter
28	LOC_Os05g24790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	14310906	14312989	+	CDS,promoter,downstream
28	LOC_Os04g41690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	24527337	24531844	+	CDS
28	LOC_Os07g23010	hypothetical protein	gene	hypothetical protein	chr7	12980283	12980901	+	CDS,promoter,downstream
28	LOC_Os06g44690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	26977694	26981024	+	CDS,downstream
28	LOC_Os02g31050	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	18547487	18548899	-	CDS,promoter,downstream
28	LOC_Os04g20890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11713826	11716619	-	CDS
28	LOC_Os12g13050	hypothetical protein	gene	hypothetical protein	chr12	7242913	7243973	+	CDS,promoter,downstream
28	LOC_Os05g34440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	20339197	20342982	-	CDS,promoter
28	LOC_Os03g43270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24119898	24124298	-	CDS,promoter,downstream
28	LOC_Os11g12660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	7128967	7134091	+	CDS
28	LOC_Os05g16940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9656774	9657690	-	CDS,promoter,downstream
28	LOC_Os09g04270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2265435	2272292	+	CDS,promoter,downstream
28	LOC_Os09g06840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3270351	3271510	+	CDS,promoter,downstream
28	LOC_Os05g39420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	23058065	23061948	-	CDS
28	LOC_Os04g19210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10665036	10667725	+	CDS,promoter,downstream
28	LOC_Os10g18060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9081182	9086595	-	CDS,promoter
28	LOC_Os12g25390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14645703	14648651	-	CDS,promoter,downstream
28	LOC_Os08g19660	hypothetical protein	gene	hypothetical protein	chr8	11769346	11771876	-	CDS,promoter
28	LOC_Os02g25490	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	14876722	14880521	+	CDS,downstream
28	LOC_Os11g01970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	517937	523281	+	CDS,promoter,downstream
28	LOC_Os08g45120	hypothetical protein	gene	hypothetical protein	chr8	28324828	28327169	+	CDS,downstream
28	LOC_Os04g18600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10264974	10270465	+	CDS,promoter,downstream
28	LOC_Os11g19630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11307741	11310253	+	CDS,promoter,downstream
28	LOC_Os01g40360	amino acid transporter family protein, putative	gene	amino acid transporter family protein, putative	chr1	22784582	22786922	+	CDS,downstream
28	LOC_Os08g42140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26623549	26629365	-	CDS
28	LOC_Os05g16970	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	9679483	9682618	-	CDS,promoter,downstream
28	LOC_Os05g21100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12404494	12410679	+	CDS
28	LOC_Os07g17650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10422425	10426458	+	CDS,promoter,downstream
28	LOC_Os12g19790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11529979	11533771	+	CDS,downstream
28	LOC_Os05g08140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4434965	4435879	+	CDS,promoter,downstream
28	LOC_Os03g31540	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	17966111	17967312	-	CDS,promoter,downstream
28	LOC_Os11g25690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14188236	14193609	+	CDS,promoter,downstream
28	LOC_Os03g29206	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16604311	16605383	+	CDS,promoter,downstream
28	LOC_Os09g35660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	20509216	20513394	-	CDS,promoter
28	LOC_Os01g28894	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16191701	16192792	-	CDS,promoter,downstream
28	LOC_Os11g06570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	3155631	3171408	+	CDS
28	LOC_Os04g21150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11897172	11900096	-	CDS,promoter
28	LOC_Os04g38200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22550290	22552735	+	CDS,promoter,downstream
28	LOC_Os11g26100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14467492	14470117	+	CDS,promoter,downstream
28	LOC_Os09g07000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3388902	3396159	+	CDS,downstream
28	LOC_Os10g10890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6045509	6047275	-	CDS,downstream
28	LOC_Os10g34884	RIPER7 - Ripening-related family protein precursor, expressed	gene	RIPER7 - Ripening-related family protein precursor, expressed	chr10	18541925	18549873	-	CDS,promoter,downstream
28	LOC_Os04g29270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17176037	17182960	+	CDS
28	LOC_Os09g07880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4003816	4006901	+	CDS,promoter,downstream
28	LOC_Os12g26180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15250417	15254799	-	CDS
28	LOC_Os02g26740	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	15700031	15704838	+	CDS,downstream
28	LOC_Os05g37070	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	21598791	21603013	-	CDS,promoter,downstream
28	LOC_Os03g39840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	22152106	22158132	+	CDS,promoter
28	LOC_Os02g11730	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	6041607	6047544	+	CDS,promoter,downstream
28	LOC_Os04g03790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1685700	1691854	-	CDS
28	LOC_Os08g16170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9852355	9854514	+	CDS,promoter,downstream
28	LOC_Os06g28860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16450828	16452587	-	CDS,promoter,downstream
28	LOC_Os03g55690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	31696491	31700684	-	CDS
28	LOC_Os09g18380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11280227	11283533	-	CDS,promoter
28	LOC_Os08g11020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6490909	6492400	+	CDS,promoter,downstream
28	LOC_Os11g25180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13877958	13884836	-	CDS,downstream
28	LOC_Os11g11140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6157732	6162293	+	CDS,downstream
28	LOC_Os05g44830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26000625	26001265	-	CDS,promoter,downstream
28	LOC_Os07g24450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13921007	13924659	+	CDS,promoter
28	LOC_Os11g11300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6265963	6269619	+	CDS
28	LOC_Os12g19519	unknown	gene	unknown	chr12	11340954	11341806	+	CDS,downstream
28	LOC_Os12g42640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26467261	26470961	-	CDS,promoter
28	LOC_Os07g18760	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11092794	11095274	+	CDS
28	LOC_Os10g39080	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	20756128	20761161	-	CDS,promoter,downstream
28	LOC_Os02g17010	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	9719289	9720778	-	CDS,promoter,downstream
28	LOC_Os08g23510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14230698	14235094	-	CDS
28	LOC_Os11g17690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9864202	9869353	+	CDS,promoter,downstream
28	LOC_Os07g29540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17340657	17342826	+	CDS,downstream
28	LOC_Os03g40970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22766976	22772941	-	CDS,downstream
28	LOC_Os07g45690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27278389	27279747	-	CDS,promoter,downstream
28	LOC_Os12g27270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16004027	16014603	-	CDS
28	LOC_Os11g30390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	17191752	17198780	+	CDS
28	LOC_Os09g21640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13103635	13110007	+	CDS,promoter,downstream
28	LOC_Os12g08450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4293301	4295718	-	CDS,promoter
28	LOC_Os03g40460	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	22473032	22476619	-	CDS,promoter,downstream
28	LOC_Os10g19980	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	9954497	9955677	+	CDS,promoter,downstream
28	LOC_Os08g29050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17790814	17791541	+	CDS,promoter,downstream
28	LOC_Os07g23090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13019620	13021109	+	CDS,promoter,downstream
28	LOC_Os06g27880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15797382	15806061	+	CDS,promoter
28	LOC_Os10g43020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	23108272	23110384	-	CDS,promoter,downstream
28	LOC_Os12g22340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12611389	12613073	-	CDS,downstream
28	LOC_Os01g16270	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	9214675	9218481	+	CDS,promoter,downstream
28	LOC_Os02g29420	hypothetical protein	gene	hypothetical protein	chr2	17472302	17475239	-	CDS,promoter,downstream
28	LOC_Os05g24910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	14364470	14369343	+	CDS
28	LOC_Os09g08460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	4411239	4416051	-	CDS,promoter
28	LOC_Os08g31020	hypothetical protein	gene	hypothetical protein	chr8	19150410	19151479	-	CDS,promoter,downstream
28	LOC_Os08g29540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18107955	18113367	-	CDS,promoter,downstream
28	LOC_Os12g24950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14322247	14324951	+	CDS,promoter,downstream
28	LOC_Os11g17390	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	9691414	9696114	-	CDS
28	LOC_Os10g22220	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	11423570	11426898	-	CDS,promoter,downstream
28	LOC_Os11g30150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17061069	17064444	+	CDS,promoter,downstream
28	LOC_Os09g08290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	4285895	4287615	-	CDS,promoter,downstream
28	LOC_Os07g19590	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	11600678	11602971	-	CDS,promoter,downstream
28	LOC_Os10g30260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	15645898	15652050	-	CDS,promoter
28	LOC_Os04g48650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28816620	28817634	+	CDS,promoter,downstream
28	LOC_Os10g01860	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	559322	560577	-	CDS,promoter
28	LOC_Os05g30090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17348976	17361892	+	CDS,promoter
28	LOC_Os11g22980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12754101	12755952	-	CDS,downstream
28	LOC_Os07g22480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12640454	12645551	+	CDS,promoter,downstream
28	LOC_Os11g43270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25635329	25635982	+	CDS,downstream
28	LOC_Os04g33330	expressed protein	gene	expressed protein	chr4	20014867	20017443	-	three_prime_UTR,promoter
28	LOC_Os12g15580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8900137	8900964	+	CDS,promoter
28	LOC_Os06g31170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18106111	18110379	-	CDS,promoter,downstream
28	LOC_Os12g29020	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	17163736	17169668	+	CDS
28	LOC_Os09g14440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8531055	8534150	+	CDS
28	LOC_Os09g38180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	21990846	21996285	+	CDS
28	LOC_Os04g12669	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7009613	7016439	-	CDS
28	LOC_Os04g20640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11542254	11548743	-	CDS,downstream
28	LOC_Os11g30960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17545143	17550237	-	CDS,promoter,downstream
28	LOC_Os02g15470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8664543	8667607	+	CDS,downstream
28	LOC_Os04g02180	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	731328	735911	-	CDS,promoter,downstream
28	LOC_Os02g23970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13891036	13895400	-	CDS,promoter,downstream
28	LOC_Os09g23190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13746106	13752893	+	CDS,downstream
28	LOC_Os09g12460	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	7126341	7127357	-	CDS,promoter,downstream
28	LOC_Os02g39860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24081546	24083402	-	CDS,promoter
28	LOC_Os02g24490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14182657	14184043	-	CDS,promoter,downstream
28	LOC_Os03g37430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20753314	20758448	+	CDS,downstream
28	LOC_Os01g02260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	693716	695113	-	CDS,promoter,downstream
28	LOC_Os03g45590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25724928	25730141	+	CDS,promoter,downstream
28	LOC_Os09g29090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17666908	17671358	+	CDS
28	LOC_Os06g33270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19368197	19371083	-	CDS,promoter,downstream
28	LOC_Os05g08170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4453270	4462114	-	CDS,promoter,downstream
28	LOC_Os02g44450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26907242	26908504	-	CDS,promoter,downstream
28	LOC_Os11g19310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11062270	11065318	+	CDS,downstream
28	LOC_Os12g19760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11508850	11516197	-	CDS,promoter,downstream
28	LOC_Os04g26040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15139366	15142113	-	CDS
28	LOC_Os12g34790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	21089469	21090009	+	CDS,downstream
28	LOC_Os08g17490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10709171	10712133	-	CDS,promoter
28	LOC_Os05g39470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	23090063	23092861	-	CDS,promoter
28	LOC_Os11g27650	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	15455095	15459003	+	CDS,downstream
28	LOC_Os12g16050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9138936	9143264	+	CDS,promoter,downstream
28	LOC_Os04g27760	terpene synthase, putative	gene	terpene synthase, putative	chr4	16235489	16238876	-	CDS,promoter
28	LOC_Os05g28560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16667623	16670482	-	CDS,promoter
28	LOC_Os12g35880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21825795	21831427	+	CDS
28	LOC_Os11g26509	unknown	gene	unknown	chr11	14730266	14730757	+	CDS,downstream
28	LOC_Os05g16910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	9629028	9636200	-	CDS
28	LOC_Os11g20190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	11663539	11664853	+	CDS,downstream
28	LOC_Os11g26956	hypothetical protein	gene	hypothetical protein	chr11	15044994	15045575	+	CDS,downstream
28	LOC_Os01g15620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	8774599	8779615	+	CDS,downstream
28	LOC_Os06g28580	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16255368	16256590	-	CDS,promoter,downstream
28	LOC_Os04g05590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2839343	2842381	-	CDS,promoter
28	LOC_Os05g28490	FAD-binding domain-containing protein, putative	gene	FAD-binding domain-containing protein, putative	chr5	16620140	16621015	+	CDS,promoter,downstream
28	LOC_Os12g24859	unknown	gene	unknown	chr12	14254495	14255190	-	CDS,promoter,downstream
28	LOC_Os12g22610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12769165	12776989	+	CDS,promoter
28	LOC_Os06g31110	hypothetical protein	gene	hypothetical protein	chr6	18086573	18087485	+	CDS,downstream
28	LOC_Os11g22390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12374997	12377458	+	CDS,promoter,downstream
28	LOC_Os09g25120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	15033926	15040081	-	CDS,promoter
28	LOC_Os09g09680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5222688	5228798	+	CDS,promoter,downstream
28	LOC_Os05g32040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18607109	18609292	+	CDS,promoter,downstream
28	LOC_Os06g19230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	10936897	10941673	-	CDS,downstream
28	LOC_Os11g30552	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17309993	17314948	+	CDS,promoter
28	LOC_Os04g20290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11337609	11340052	-	CDS,promoter,downstream
28	LOC_Os07g31050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18382663	18386055	+	CDS
28	LOC_Os06g34600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20120528	20124292	-	CDS,promoter
28	LOC_Os09g04260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2250505	2260956	+	CDS,downstream
28	LOC_Os04g46530	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	27407100	27411011	-	CDS
28	LOC_Os10g25960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13380913	13384599	-	CDS,downstream
28	LOC_Os07g19350	hypothetical protein	gene	hypothetical protein	chr7	11452606	11453078	-	CDS,promoter,downstream
28	LOC_Os07g24390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13883243	13886900	+	CDS,promoter,downstream
28	LOC_Os07g12070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6739037	6741844	-	CDS,promoter
28	LOC_Os11g17410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9703870	9705703	+	CDS,promoter
28	LOC_Os06g32390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18847648	18851152	-	CDS,promoter
28	LOC_Os09g06580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3128207	3129193	+	CDS,promoter
28	LOC_Os05g01770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	465084	468601	-	CDS,promoter,downstream
28	LOC_Os03g61450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34857143	34858171	+	CDS,promoter,downstream
28	LOC_Os06g28450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16178853	16182852	+	CDS,promoter,downstream
28	LOC_Os05g13990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	7788246	7791550	+	CDS,promoter,downstream
28	LOC_Os01g58830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	33991225	33993144	-	CDS,promoter,downstream
28	LOC_Os06g22090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	12813795	12819941	-	CDS,promoter
28	LOC_Os08g05170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2696365	2697714	+	CDS,promoter,downstream
28	LOC_Os11g32560	hypothetical protein	gene	hypothetical protein	chr11	18748736	18750975	+	CDS,promoter,downstream
28	LOC_Os01g58560	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	33845807	33847987	-	CDS,promoter
28	LOC_Os04g25520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	14790868	14792258	+	CDS,promoter,downstream
28	LOC_Os01g23980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13495252	13501210	+	CDS
28	LOC_Os03g41690	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	23163946	23164329	+	CDS,promoter,downstream
28	LOC_Os12g12480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6874136	6876756	-	CDS,promoter,downstream
28	LOC_Os08g31190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	19275971	19278570	-	CDS,promoter
28	LOC_Os05g02320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	748084	750554	+	CDS,promoter,downstream
28	LOC_Os02g15390	BED zinc finger family protein	gene	BED zinc finger family protein	chr2	8607257	8608177	-	CDS,promoter,downstream
28	LOC_Os01g11320	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	6064683	6065478	-	CDS,promoter
28	LOC_Os09g13480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7803064	7806239	-	CDS,promoter,downstream
28	LOC_Os12g26820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15707623	15711458	+	CDS,promoter,downstream
28	LOC_Os07g42210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	25261613	25270132	-	CDS
28	LOC_Os11g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	1189926	1193965	+	CDS,promoter,downstream
28	LOC_Os02g44430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	26896819	26898680	+	CDS,promoter,downstream
28	LOC_Os09g13230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7620709	7628582	-	CDS,promoter,downstream
28	LOC_Os07g15620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9055474	9061302	+	CDS,downstream
28	LOC_Os09g01570	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	401813	405775	+	CDS,promoter
28	LOC_Os10g18570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9347799	9348596	+	CDS,promoter,downstream
28	LOC_Os06g25910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	15158225	15162373	-	CDS,downstream
28	LOC_Os01g65750	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	38168693	38170865	-	CDS,promoter
28	LOC_Os10g17330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8649365	8650393	-	CDS,promoter,downstream
28	LOC_Os05g25110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14487210	14491412	-	CDS,promoter,downstream
28	LOC_Os01g06100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	2909081	2911507	+	CDS
28	LOC_Os12g10480	hypothetical protein	gene	hypothetical protein	chr12	5554889	5556161	-	CDS,promoter
28	LOC_Os04g25730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14902601	14905934	-	CDS
28	LOC_Os04g23670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13530553	13532427	+	CDS,promoter,downstream
28	LOC_Os09g28790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17488301	17489681	-	CDS,promoter
28	LOC_Os12g15150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8640043	8641489	+	CDS,promoter,downstream
28	LOC_Os09g09950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5413271	5418455	-	CDS
28	LOC_Os02g35270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	21187494	21190742	-	CDS
28	LOC_Os09g04010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2055416	2058804	-	CDS,promoter
28	LOC_Os11g28830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16232734	16234254	-	CDS,promoter,downstream
28	LOC_Os12g43480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	26939536	26944530	+	CDS,promoter,downstream
28	LOC_Os05g17700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10180966	10183764	+	CDS,promoter,downstream
28	LOC_Os12g10030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5310670	5315018	-	CDS,promoter,downstream
28	LOC_Os11g31310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17797029	17798868	-	CDS,promoter,downstream
28	LOC_Os03g21350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	12208332	12212332	-	CDS,promoter,downstream
28	LOC_Os05g18560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10745330	10748278	-	CDS,promoter,downstream
28	LOC_Os12g25850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14992000	14995864	-	CDS,promoter,downstream
28	LOC_Os01g43980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25202282	25209571	+	CDS
28	LOC_Os02g15630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	8783919	8792096	+	CDS,downstream
28	LOC_Os10g07598	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4201404	4204314	-	CDS,promoter,downstream
28	LOC_Os10g11650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6439883	6442533	-	CDS,promoter,downstream
28	LOC_Os01g33590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18484182	18487232	+	CDS,promoter,downstream
28	LOC_Os11g41620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	24509988	24512720	+	CDS,downstream
28	LOC_Os03g33730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19277554	19280544	-	CDS,promoter,downstream
28	LOC_Os08g24040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14529567	14531525	-	CDS
28	LOC_Os03g32440	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	18548210	18551223	-	CDS,three_prime_UTR
28	LOC_Os08g17890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10975095	10981946	+	CDS,promoter,downstream
28	LOC_Os04g56260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	33354169	33360126	+	CDS
28	LOC_Os01g21420	pre-mRNA-splicing factor SF2, putative, expressed	gene	pre-mRNA-splicing factor SF2, putative, expressed	chr1	11955842	11963786	+	CDS
28	LOC_Os05g19240	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	11171272	11175556	-	CDS,promoter
28	LOC_Os07g24680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14039686	14041637	+	CDS,promoter,downstream
28	LOC_Os04g07480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3970357	3971706	+	CDS,promoter,downstream
28	LOC_Os08g16760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10248108	10251347	+	CDS,promoter,downstream
28	LOC_Os09g01490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	358692	360147	-	CDS,promoter,downstream
28	LOC_Os08g05210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2711118	2712947	+	CDS,promoter,downstream
28	LOC_Os06g04770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	2076565	2082612	-	CDS,downstream
28	LOC_Os01g63610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	36883796	36890508	-	CDS,promoter
28	LOC_Os12g09910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	5253887	5255823	+	CDS,promoter,downstream
28	LOC_Os03g26880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15346699	15349851	+	CDS,promoter,downstream
28	LOC_Os02g47730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29168472	29176129	-	CDS,promoter
28	LOC_Os09g10109	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5506267	5507347	+	CDS,promoter,downstream
28	LOC_Os07g20530	hypothetical protein	gene	hypothetical protein	chr7	11858797	11860187	+	CDS,promoter
28	LOC_Os08g34230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21454294	21456702	-	CDS
28	LOC_Os11g39870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23297919	23304052	+	CDS,promoter,downstream
28	LOC_Os10g21450	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	10912084	10913650	-	CDS,promoter,downstream
28	LOC_Os09g22060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13355473	13356645	-	CDS,promoter,downstream
28	LOC_Os09g30020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	18261290	18266894	-	CDS,promoter
28	LOC_Os01g10720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	5735299	5739751	-	CDS,downstream
28	LOC_Os02g29230	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	17348970	17357069	+	CDS,promoter
28	LOC_Os05g08050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4379355	4380002	+	CDS,promoter,downstream
28	LOC_Os05g19530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11347864	11352409	-	CDS,promoter,downstream
28	LOC_Os09g26640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16161019	16166129	+	CDS
28	LOC_Os02g13730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7387035	7390209	-	CDS,promoter,downstream
28	LOC_Os04g45430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	26689801	26695914	-	CDS,promoter
28	LOC_Os06g17670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10258382	10259623	+	CDS,promoter,downstream
28	LOC_Os10g28650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	14860161	14865872	-	CDS
28	LOC_Os06g22430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13033642	13039977	+	CDS
28	LOC_Os09g12670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	7250983	7251387	-	CDS,downstream
28	LOC_Os04g27280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	15947027	15947934	-	CDS,promoter,downstream
28	LOC_Os09g01350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	278024	280949	-	CDS,promoter,downstream
28	LOC_Os01g55470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	31956455	31959975	-	CDS,promoter,downstream
28	LOC_Os04g16120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8746071	8749406	+	CDS,promoter
28	LOC_Os12g22400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12646039	12649248	+	CDS,promoter,downstream
28	LOC_Os05g17660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10162670	10163448	+	CDS,promoter,downstream
28	LOC_Os07g10200	hypothetical protein	gene	hypothetical protein	chr7	5484352	5485476	-	CDS,promoter,downstream
28	LOC_Os11g21880	hypothetical protein	gene	hypothetical protein	chr11	12094991	12095945	-	CDS,promoter,downstream
28	LOC_Os03g30370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	17317644	17320985	+	CDS,promoter,downstream
28	LOC_Os01g09610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	4937911	4940835	-	CDS,promoter
28	LOC_Os08g31680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19633263	19638868	-	CDS
28	LOC_Os06g25120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14699171	14701108	+	CDS,downstream
28	LOC_Os01g25970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	14724779	14725957	-	CDS,promoter,downstream
28	LOC_Os07g40610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24329455	24335611	-	CDS,promoter
28	LOC_Os05g39900	CBL-interacting serine/threonine-protein kinase 15, putative	gene	CBL-interacting serine/threonine-protein kinase 15, putative	chr5	23378854	23379952	+	CDS,promoter
28	LOC_Os05g17480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10038259	10043578	-	CDS,promoter,downstream
28	LOC_Os06g45560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27582937	27589320	+	CDS
28	LOC_Os04g12520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	6912178	6918962	+	CDS
28	LOC_Os07g42680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	25552379	25556399	+	CDS
28	LOC_Os09g13330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7685328	7690305	-	CDS,downstream
28	LOC_Os08g13580	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr8	8065924	8068987	-	CDS
28	LOC_Os01g34710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19141906	19147368	+	CDS,downstream
28	LOC_Os06g13750	expressed protein	gene	expressed protein	chr6	7618835	7622920	-	CDS,promoter,downstream
28	LOC_Os02g17450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10040212	10042759	+	CDS,promoter
28	LOC_Os01g24860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13997805	14003095	+	CDS,promoter,downstream
28	LOC_Os11g21960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12133993	12143528	-	CDS,promoter,downstream
28	LOC_Os06g38900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23080487	23083994	-	CDS
28	LOC_Os01g31750	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	17376563	17379301	+	CDS
28	LOC_Os03g32450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18554290	18554748	-	CDS,promoter,downstream
28	LOC_Os08g15320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9312447	9315774	-	CDS,promoter
28	LOC_Os02g19360	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	11309095	11310567	+	CDS,promoter,downstream
28	LOC_Os05g37550	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	21917529	21922076	-	CDS,promoter
28	LOC_Os05g04250	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	1936080	1937802	-	CDS,promoter,downstream
28	LOC_Os11g22240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12295590	12301948	-	CDS
28	LOC_Os12g17980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10327037	10329166	-	CDS,promoter,downstream
28	LOC_Os05g14420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8128930	8134481	-	CDS,promoter
28	LOC_Os07g38190	hypothetical protein	gene	hypothetical protein	chr7	22908663	22909403	+	CDS,promoter,downstream
28	LOC_Os10g11540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6406680	6408420	+	CDS,promoter,downstream
28	LOC_Os02g33050	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	19637781	19638326	-	CDS,promoter
28	LOC_Os05g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1313932	1315923	+	CDS,downstream
28	LOC_Os04g14960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8402153	8404236	-	CDS,promoter,downstream
28	LOC_Os10g19280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	9750625	9752318	-	CDS,promoter,downstream
28	LOC_Os06g29760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17085123	17091233	-	CDS
28	LOC_Os11g35780	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	20539220	20540745	-	CDS,downstream
28	LOC_Os12g23810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13531117	13534126	-	CDS,promoter
28	LOC_Os02g16990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9697493	9702949	-	CDS,promoter,downstream
28	LOC_Os11g45230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26898919	26901859	+	CDS
28	LOC_Os06g25740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	15035930	15037225	-	CDS,promoter,downstream
28	LOC_Os09g08860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4680329	4683252	+	CDS,downstream
28	LOC_Os12g14180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8048211	8053248	-	CDS,promoter
28	LOC_Os02g45400	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	27605204	27608926	-	CDS
28	LOC_Os07g16240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9474201	9477932	+	CDS,downstream
28	LOC_Os04g04590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2186395	2190404	+	CDS,promoter,downstream
28	LOC_Os08g29180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17868341	17881303	+	CDS
28	LOC_Os04g54520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32244920	32247572	-	CDS,promoter
28	LOC_Os03g31250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17791190	17794522	-	CDS,downstream
28	LOC_Os09g23908	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14257544	14258188	-	three_prime_UTR,promoter
28	LOC_Os12g16110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9194622	9197908	+	CDS,promoter
28	LOC_Os09g01480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	346806	356584	-	CDS,downstream
28	LOC_Os07g47900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28606610	28609126	-	CDS,promoter,downstream
28	LOC_Os04g48240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28545633	28551601	-	CDS
28	LOC_Os05g26570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15378845	15382437	+	CDS,downstream
28	LOC_Os12g39190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	24097238	24101056	+	CDS,promoter,downstream
28	LOC_Os04g16420	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8919461	8922581	+	CDS,promoter,downstream
28	LOC_Os04g06230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3228585	3231038	-	CDS,promoter
28	LOC_Os11g09540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5106348	5106641	+	CDS,promoter,downstream
28	LOC_Os07g33150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19795213	19798064	+	CDS,promoter,downstream
28	LOC_Os05g01006	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26714	30992	-	CDS,promoter
28	LOC_Os12g22000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12370570	12373181	-	CDS,promoter,downstream
28	LOC_Os02g48310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	29556250	29559068	+	CDS,promoter
28	LOC_Os02g46880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	28589936	28595836	+	CDS
28	LOC_Os11g12780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7232939	7236598	+	CDS,promoter
28	LOC_Os06g33430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19466522	19472679	+	CDS,downstream
28	LOC_Os10g17870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8962525	8965711	-	CDS,promoter
28	LOC_Os05g10230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5561126	5565913	-	CDS,downstream
28	LOC_Os06g36430	variant latency associated nuclear antigen, putative	gene	variant latency associated nuclear antigen, putative	chr6	21390529	21391513	+	CDS,promoter,downstream
28	LOC_Os10g13480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7296445	7299682	-	CDS,promoter,downstream
28	LOC_Os05g24340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	14021145	14022941	-	CDS,promoter
28	LOC_Os04g53980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	31978387	31980567	-	CDS
28	LOC_Os11g10580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5799327	5801702	+	CDS
28	LOC_Os11g27920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15599222	15601965	-	CDS,promoter,downstream
28	LOC_Os05g33790	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	19848020	19852241	+	CDS,downstream
28	LOC_Os03g32460	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr3	18557916	18560588	-	CDS,three_prime_UTR,promoter
28	LOC_Os04g06430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3372512	3376931	-	CDS,downstream
28	LOC_Os04g22030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12465308	12471664	+	CDS,promoter,downstream
28	LOC_Os04g25870	OsMADS84 - MADS-box family gene with M-gamma type-box	gene	OsMADS84 - MADS-box family gene with M-gamma type-box	chr4	15026461	15027090	-	CDS,downstream
28	LOC_Os08g16680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	10201124	10205096	-	CDS
28	LOC_Os05g18680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10822107	10824560	+	CDS,downstream
28	LOC_Os01g15730	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	8846649	8849742	-	CDS,promoter
28	LOC_Os03g38100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21153384	21155314	+	CDS,promoter,downstream
28	LOC_Os02g18360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	10681484	10688092	-	CDS,promoter
28	LOC_Os03g34320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19533933	19536093	-	CDS,promoter
28	LOC_Os01g35720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19776800	19785043	-	CDS,promoter,downstream
28	LOC_Os04g15760	DEFL51 - Defensin and Defensin-like DEFL family	gene	DEFL51 - Defensin and Defensin-like DEFL family	chr4	8553363	8561124	-	CDS,promoter
28	LOC_Os04g03970	hypothetical protein	gene	hypothetical protein	chr4	1804064	1804747	+	CDS,promoter
28	LOC_Os09g13170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7584220	7586686	+	CDS,downstream
28	LOC_Os04g22060	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	12478156	12485301	-	CDS
28	LOC_Os10g23110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11984452	11993712	+	CDS,downstream
28	LOC_Os06g20710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11925248	11928945	-	CDS,promoter
28	LOC_Os08g05190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2705532	2706329	-	CDS,promoter,downstream
28	LOC_Os03g33360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19073407	19075919	+	CDS,promoter,downstream
28	LOC_Os08g21500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12810486	12812184	+	CDS,promoter,downstream
28	LOC_Os02g28520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	16869277	16873512	-	CDS,promoter,downstream
28	LOC_Os02g22490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13423733	13424905	+	CDS,downstream
28	LOC_Os07g10900	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	5959692	5962376	-	CDS,downstream
28	LOC_Os04g09960	hypothetical protein	gene	hypothetical protein	chr4	5353749	5355180	+	CDS,promoter
28	LOC_Os04g19780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11037956	11040767	-	CDS,promoter
28	LOC_Os09g16370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10002548	10004233	-	CDS,promoter,downstream
28	LOC_Os05g02290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	733849	735278	+	CDS,promoter,downstream
28	LOC_Os06g24950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14620186	14621253	-	CDS,promoter,downstream
28	LOC_Os12g43280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26832354	26835281	-	CDS,promoter,downstream
28	LOC_Os07g41880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25087666	25093821	-	CDS,promoter,downstream
28	LOC_Os06g31350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18244020	18250831	+	CDS
28	LOC_Os12g15910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9053044	9056084	-	CDS
28	LOC_Os01g20130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11438741	11442510	+	CDS,downstream
28	LOC_Os06g32570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18940161	18940789	+	CDS,promoter,downstream
28	LOC_Os10g18234	hypothetical protein	gene	hypothetical protein	chr10	9191539	9194350	-	CDS
28	LOC_Os01g24270	hypothetical protein	gene	hypothetical protein	chr1	13671110	13671586	+	CDS,promoter,downstream
28	LOC_Os06g33900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19717912	19720854	-	CDS,promoter
28	LOC_Os05g15430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8722411	8726649	+	CDS,promoter,downstream
28	LOC_Os07g27900	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	16277544	16280394	+	CDS,promoter,downstream
28	LOC_Os12g33760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20341321	20341560	-	CDS,promoter,downstream
28	LOC_Os05g18920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10981790	10986013	-	CDS,promoter
28	LOC_Os04g43600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25614721	25616922	-	CDS,promoter,downstream
28	LOC_Os12g23920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13590476	13596565	-	CDS,promoter
28	LOC_Os08g13660	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	8124028	8127377	+	CDS,promoter,downstream
28	LOC_Os04g19850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11068020	11070259	+	CDS,promoter,downstream
28	LOC_Os06g07530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	3623428	3629198	-	CDS
28	LOC_Os10g17850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8958868	8960448	+	CDS,promoter,downstream
28	LOC_Os01g63030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	36511624	36515570	+	CDS,downstream
28	LOC_Os01g31790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	17416972	17417638	-	CDS,promoter
28	LOC_Os11g42980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25439015	25442741	+	CDS
28	LOC_Os06g18970	expressed protein	gene	expressed protein	chr6	10790823	10797650	-	CDS
28	LOC_Os10g10100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5531336	5536906	+	CDS,promoter,downstream
28	LOC_Os07g24640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14016980	14020585	+	CDS,promoter,downstream
28	LOC_Os12g15350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8760825	8766771	+	CDS,promoter,downstream
28	LOC_Os09g01100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	110598	116009	-	CDS,promoter,downstream
28	LOC_Os01g29507	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16539152	16544887	+	CDS,downstream
28	LOC_Os09g09900	hypothetical protein	gene	hypothetical protein	chr9	5376937	5378678	+	CDS,promoter,downstream
28	LOC_Os04g11340	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6185272	6187320	-	CDS
28	LOC_Os06g20720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11936290	11938122	+	CDS,downstream
28	LOC_Os02g19560	unknown	gene	unknown	chr2	11433905	11434321	-	CDS,promoter,downstream
28	LOC_Os03g30710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17494624	17501825	+	CDS,downstream
28	LOC_Os03g63630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35921096	35927248	+	CDS
28	LOC_Os07g30230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17856117	17863671	-	CDS,downstream
28	LOC_Os05g14500	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	8195660	8198279	+	CDS,promoter,downstream
28	LOC_Os06g42250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	25370889	25376623	+	CDS,downstream
28	LOC_Os08g09160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5307645	5311562	-	CDS
28	LOC_Os12g17110	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9794521	9795405	-	CDS,promoter,downstream
28	LOC_Os05g05010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2430293	2433231	-	CDS,promoter,downstream
28	LOC_Os08g42299	hypothetical protein	gene	hypothetical protein	chr8	26702005	26704031	-	CDS
28	LOC_Os07g19130	cytochrome P450, putative	gene	cytochrome P450, putative	chr7	11325344	11326866	-	CDS,downstream
28	LOC_Os03g22634	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr3	13055505	13070191	-	CDS
28	LOC_Os08g32280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	19998309	19999747	-	CDS
28	LOC_Os12g25590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14807082	14809905	-	CDS,promoter,downstream
28	LOC_Os01g19660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11147512	11150434	-	CDS,promoter,downstream
28	LOC_Os09g07260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3558989	3559863	+	CDS,promoter
28	LOC_Os02g25090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14561324	14565023	+	CDS,promoter,downstream
28	LOC_Os05g17070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9746836	9747318	+	CDS,promoter,downstream
28	LOC_Os10g07390	hypothetical protein	gene	hypothetical protein	chr10	3902659	3903875	+	CDS,promoter
28	LOC_Os08g08780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5089028	5091968	-	CDS,promoter,downstream
28	LOC_Os04g07570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4019360	4021287	+	CDS,promoter
28	LOC_Os12g33820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20367061	20369732	-	CDS
28	LOC_Os07g22870	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	12894682	12895125	+	CDS,promoter,downstream
28	LOC_Os05g08020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4336841	4338221	+	CDS,promoter,downstream
28	LOC_Os04g23290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13283858	13285371	-	CDS,promoter
28	LOC_Os04g14970	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8404514	8406966	-	CDS,promoter,downstream
28	LOC_Os05g26310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15246559	15249747	+	CDS,promoter,downstream
28	LOC_Os10g03700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1659748	1670331	-	CDS
28	LOC_Os03g12480	hypothetical protein	gene	hypothetical protein	chr3	6596843	6599946	+	CDS,promoter,downstream
28	LOC_Os11g20400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11802963	11807070	+	CDS,downstream
28	LOC_Os10g10520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5816749	5819539	-	CDS,downstream
28	LOC_Os06g01270	hypothetical protein	gene	hypothetical protein	chr6	177343	177894	-	CDS,downstream
28	LOC_Os09g14850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8857599	8862586	+	CDS,promoter,downstream
28	LOC_Os01g27910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15599232	15601343	-	CDS,promoter,downstream
28	LOC_Os02g05550	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	2681212	2685179	+	CDS
28	LOC_Os07g17030	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	10023422	10027644	+	CDS,downstream
28	LOC_Os05g10970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6123062	6128216	-	CDS
28	LOC_Os04g12430	expressed protein	gene	expressed protein	chr4	6865107	6868308	+	five_prime_UTR
28	LOC_Os04g15730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	8548188	8548604	+	CDS,promoter
28	LOC_Os12g14890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8515093	8517516	-	CDS,downstream
28	LOC_Os03g43250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24112845	24118037	-	CDS,promoter,downstream
28	LOC_Os04g18840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10470669	10473545	-	CDS,promoter,downstream
28	LOC_Os01g29488	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16523742	16531656	+	CDS,promoter,downstream
28	LOC_Os10g11180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6210591	6213729	+	CDS,promoter,downstream
28	LOC_Os04g18410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10156631	10162786	+	CDS,downstream
28	LOC_Os09g23850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14217622	14222961	-	CDS,promoter,downstream
28	LOC_Os02g21910	hypothetical protein	gene	hypothetical protein	chr2	13027546	13030044	-	CDS
28	LOC_Os07g30700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18167275	18174097	+	CDS,downstream
28	LOC_Os09g19530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	11682894	11689049	+	CDS
28	LOC_Os08g25180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15295103	15296629	+	CDS,downstream
28	LOC_Os04g53590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	31760868	31766827	+	CDS
28	LOC_Os03g03680	transporter family protein, putative, expressed	gene	transporter family protein, putative, expressed	chr3	1630960	1637188	+	CDS,downstream
28	LOC_Os10g40800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	21845865	21850126	-	CDS
28	LOC_Os01g02210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	661283	663572	+	CDS,promoter,downstream
28	LOC_Os03g32140	hypothetical protein	gene	hypothetical protein	chr3	18386144	18387252	-	CDS,promoter
28	LOC_Os04g46690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	27494890	27502472	+	CDS
28	LOC_Os02g14390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	7900460	7904213	+	CDS,downstream
28	LOC_Os10g12220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6818697	6821655	+	CDS,downstream
28	LOC_Os05g20290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11883963	11886065	-	CDS,promoter,downstream
28	LOC_Os11g25490	hypothetical protein	gene	hypothetical protein	chr11	14057720	14058820	-	CDS,promoter
28	LOC_Os12g05500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2515221	2518171	-	CDS,promoter,downstream
28	LOC_Os09g17490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10695130	10702650	-	CDS,promoter,downstream
28	LOC_Os11g20120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11614276	11619755	-	CDS,promoter,downstream
28	LOC_Os02g18590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10837757	10843637	-	CDS,promoter,downstream
28	LOC_Os02g05180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	2474407	2480418	-	CDS,promoter,downstream
28	LOC_Os06g19870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	11360097	11365295	-	CDS
28	LOC_Os03g31839	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	18210154	18221427	+	CDS
28	LOC_Os06g28660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16320280	16326031	-	CDS,promoter
28	LOC_Os10g15279	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8033766	8036821	-	CDS,promoter,downstream
28	LOC_Os02g25100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14565482	14567715	+	CDS,promoter,downstream
28	LOC_Os08g06970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	3880769	3884455	+	CDS,promoter
28	LOC_Os12g19950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11621156	11622067	+	CDS,promoter,downstream
28	LOC_Os05g26540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15362739	15365083	-	CDS,promoter,downstream
28	LOC_Os04g01124	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	81982	82524	-	CDS,promoter,downstream
28	LOC_Os11g04640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	1973199	1977421	-	CDS,promoter
28	LOC_Os04g22810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12912490	12915359	+	CDS,promoter,downstream
28	LOC_Os08g28060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17099765	17104584	-	CDS,promoter,downstream
28	LOC_Os04g24690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14160351	14167654	-	CDS,promoter,downstream
28	LOC_Os10g26210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13505056	13509577	+	CDS,promoter,downstream
28	LOC_Os01g48490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	27790477	27799309	-	CDS,promoter
28	LOC_Os02g24250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14055975	14062631	+	CDS,promoter,downstream
28	LOC_Os04g27730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16214642	16221924	-	CDS,downstream
28	LOC_Os02g33280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	19769557	19774224	-	CDS,promoter,downstream
28	LOC_Os08g14380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8624653	8624955	-	CDS,promoter,downstream
28	LOC_Os12g08410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	4271361	4272854	-	CDS,promoter
28	LOC_Os01g29650	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16615905	16618220	-	CDS,promoter,downstream
28	LOC_Os09g31340	hypothetical protein	gene	hypothetical protein	chr9	18839526	18840120	+	CDS,downstream
28	LOC_Os08g22960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13796904	13808931	-	CDS,promoter
28	LOC_Os02g56640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34720740	34724177	+	CDS
28	LOC_Os07g26840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15526655	15529802	-	CDS,promoter,downstream
28	LOC_Os06g23990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14016350	14017341	+	CDS,promoter,downstream
28	LOC_Os12g35800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	21778025	21782188	+	CDS
28	LOC_Os04g22570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12765213	12772573	-	CDS,promoter,downstream
28	LOC_Os04g01380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	277070	279642	-	CDS,promoter,downstream
28	LOC_Os12g29360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17421617	17427301	+	CDS,promoter,downstream
28	LOC_Os10g06400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3287006	3290196	+	CDS,promoter,downstream
28	LOC_Os03g11850	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	6205887	6210266	+	CDS,downstream
28	LOC_Os11g44730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26592771	26599501	+	CDS,promoter,downstream
28	LOC_Os06g24130	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	14115597	14117702	-	CDS,promoter,downstream
28	LOC_Os05g11530	hypothetical protein	gene	hypothetical protein	chr5	6526235	6526761	+	CDS,promoter,downstream
28	LOC_Os08g22910	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13774015	13776014	+	CDS,promoter,downstream
28	LOC_Os11g22270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12307794	12309147	+	CDS,promoter,downstream
28	LOC_Os08g08770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5082630	5088716	+	CDS,downstream
28	LOC_Os10g02120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	698325	704203	-	CDS
28	LOC_Os12g35220	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr12	21376254	21379923	+	CDS
28	LOC_Os08g03810	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	1817632	1821590	-	CDS,promoter
28	LOC_Os05g09090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5054005	5056386	-	CDS,promoter,downstream
28	LOC_Os07g23840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13461993	13465536	-	CDS,promoter
28	LOC_Os05g20450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12000322	12005448	+	CDS,promoter,downstream
28	LOC_Os04g16380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8897606	8900546	-	CDS,promoter,downstream
28	LOC_Os03g29440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16777844	16780552	+	CDS,promoter,downstream
28	LOC_Os01g33970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	18694285	18698446	-	CDS,promoter
28	LOC_Os05g28110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16371394	16381528	-	CDS
28	LOC_Os07g22860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	12886212	12889975	-	CDS,downstream
28	LOC_Os01g27550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15370236	15375405	+	CDS,promoter,downstream
28	LOC_Os08g26070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	15856692	15859730	-	CDS,promoter,downstream
28	LOC_Os09g11570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6455801	6457442	+	CDS,downstream
28	LOC_Os12g17620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10085505	10090947	-	CDS,promoter,downstream
28	LOC_Os05g19230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11169061	11169719	+	CDS,downstream
28	LOC_Os09g21700	OsFBX326 - F-box domain containing protein	gene	OsFBX326 - F-box domain containing protein	chr9	13149888	13151015	-	CDS,promoter
28	LOC_Os12g20050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11656841	11660055	+	CDS,promoter,downstream
28	LOC_Os11g08140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	4268050	4269289	+	CDS,promoter,downstream
28	LOC_Os07g27740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16178654	16185149	-	CDS,promoter,downstream
28	LOC_Os04g07810	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4138967	4140572	-	CDS,promoter,downstream
28	LOC_Os06g31850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18502486	18506221	+	CDS,promoter,downstream
28	LOC_Os12g09954	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	5263988	5267238	-	CDS,promoter,downstream
28	LOC_Os10g20580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10300124	10301307	-	CDS,promoter,downstream
28	LOC_Os06g50290	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr6	30438406	30442234	+	CDS,promoter
28	LOC_Os12g27580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16231675	16235829	+	CDS,promoter,downstream
28	LOC_Os04g18990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10545904	10547395	+	CDS,promoter,downstream
28	LOC_Os02g25500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14884475	14887192	+	CDS,downstream
28	LOC_Os12g24820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14241592	14244778	+	CDS,downstream
28	LOC_Os05g24990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	14403178	14406635	-	CDS,promoter
28	LOC_Os06g49350	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	29896282	29903445	-	CDS
28	LOC_Os10g17220	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8583451	8583915	-	CDS,promoter,downstream
28	LOC_Os02g54430	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	33343419	33345131	-	CDS,downstream
28	LOC_Os09g03010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1413994	1416554	-	CDS,promoter,downstream
28	LOC_Os12g03940	hypothetical protein	gene	hypothetical protein	chr12	1629993	1630617	-	CDS,promoter,downstream
28	LOC_Os09g22350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13504997	13507840	+	promoter,downstream
28	LOC_Os10g24390	hypothetical protein	gene	hypothetical protein	chr10	12426628	12427485	+	promoter
28	LOC_Os06g44700	hypothetical protein	gene	hypothetical protein	chr6	26982446	26982774	+	promoter,downstream
28	LOC_Os04g06640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3495203	3496060	+	promoter,downstream
28	LOC_Os10g32649	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	17029671	17034157	-	promoter,downstream
28	LOC_Os10g13320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7206154	7208429	-	promoter,downstream
28	LOC_Os03g01430	hypothetical protein	gene	hypothetical protein	chr3	300936	302393	+	promoter
28	LOC_Os11g24660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13603305	13603685	-	promoter,downstream
28	LOC_Os09g23840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14208346	14212495	-	promoter,downstream
28	LOC_Os06g29290	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr6	16718386	16718850	+	promoter
28	LOC_Os07g04750	OsFBX214 - F-box domain containing protein	gene	OsFBX214 - F-box domain containing protein	chr7	2111116	2112625	+	promoter
28	LOC_Os11g27750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15511272	15512880	-	promoter,downstream
28	LOC_Os08g33410	hypothetical protein	gene	hypothetical protein	chr8	20839488	20840444	-	promoter
28	LOC_Os01g50440	AWPM-19-like membrane family protein, putative, expressed	gene	AWPM-19-like membrane family protein, putative, expressed	chr1	28954638	28955996	+	promoter
28	LOC_Os08g20800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12487712	12491673	-	promoter,downstream
28	LOC_Os02g55360	hypothetical protein	gene	hypothetical protein	chr2	33903146	33903442	+	promoter
28	LOC_Os02g42430	GEM, putative	gene	GEM, putative	chr2	25517597	25518511	-	promoter
28	LOC_Os06g42970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25815263	25816840	+	promoter,downstream
28	LOC_Os08g36730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	23170269	23173966	+	promoter
28	LOC_Os08g19200	hypothetical protein	gene	hypothetical protein	chr8	11476113	11476574	-	promoter
28	LOC_Os07g27920	hypothetical protein	gene	hypothetical protein	chr7	16283321	16283629	+	promoter
28	LOC_Os10g08370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4550674	4552864	+	promoter
28	LOC_Os07g36160	hypothetical protein	gene	hypothetical protein	chr7	21605085	21605315	+	promoter,downstream
28	LOC_Os01g67950	ubiquitin family protein, putative, expressed	gene	ubiquitin family protein, putative, expressed	chr1	39482712	39483765	+	promoter
28	LOC_Os12g24270	hypothetical protein	gene	hypothetical protein	chr12	13840005	13840346	+	promoter,downstream
28	LOC_Os03g35920	expressed protein	gene	expressed protein	chr3	19924128	19924832	-	promoter,downstream
28	LOC_Os06g24210	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	14176864	14177187	+	promoter
28	LOC_Os04g22700	expressed protein	gene	expressed protein	chr4	12860185	12860699	+	promoter
28	LOC_Os03g20190	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr3	11411433	11414206	+	promoter
28	LOC_Os08g10950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6456494	6457912	+	promoter,downstream
28	LOC_Os07g28460	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	16649384	16656253	+	promoter
28	LOC_Os09g06860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3286518	3287111	+	promoter,downstream
28	LOC_Os08g26390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16079631	16080997	-	promoter,downstream
28	LOC_Os12g29390	hypothetical protein	gene	hypothetical protein	chr12	17455916	17457236	+	promoter
28	LOC_Os02g20080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11824825	11827638	-	promoter,downstream
28	LOC_Os04g08130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4328536	4329859	-	promoter
28	LOC_Os12g10620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5661215	5661832	-	promoter,downstream
28	LOC_Os05g16030	hypothetical protein	gene	hypothetical protein	chr5	9053838	9054317	-	promoter,downstream
28	LOC_Os02g55698	hypothetical protein	gene	hypothetical protein	chr2	34103062	34103445	+	promoter,downstream
28	LOC_Os07g30740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	18193410	18194752	-	promoter,downstream
28	LOC_Os10g42960	urea active transporter, putative, expressed	gene	urea active transporter, putative, expressed	chr10	23085354	23088078	+	promoter
28	LOC_Os03g15180	PH domain containing protein, expressed	gene	PH domain containing protein, expressed	chr3	8293627	8305202	-	promoter
28	LOC_Os04g14980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8411277	8415474	-	promoter
28	LOC_Os04g20570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11483743	11485817	+	promoter,downstream
28	LOC_Os06g14910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8463877	8465737	-	promoter
28	LOC_Os10g33230	RNA recognition motif containing protein, putative, expressed	gene	RNA recognition motif containing protein, putative, expressed	chr10	17360036	17365373	+	promoter
28	LOC_Os03g15150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8274111	8274704	+	promoter
28	LOC_Os02g48270	DUF260 domain containing protein, putative	gene	DUF260 domain containing protein, putative	chr2	29538831	29539591	+	promoter
28	LOC_Os09g12340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7033461	7034795	-	promoter,downstream
28	LOC_Os05g23040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13081956	13082336	+	promoter
28	LOC_Os05g06940	relA-SpoT like protein RSH4, putative, expressed	gene	relA-SpoT like protein RSH4, putative, expressed	chr5	3638094	3640474	+	promoter
28	LOC_Os08g28530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17419464	17423587	+	promoter
28	LOC_Os11g19120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10901503	10903668	+	promoter
28	LOC_Os01g36780	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	20429882	20433290	-	promoter
28	LOC_Os04g23650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13524819	13526240	+	promoter
28	LOC_Os09g06790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3243912	3246962	-	promoter,downstream
28	LOC_Os07g45430	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	27098604	27101225	-	promoter
28	LOC_Os02g24260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14064882	14065562	+	promoter
28	LOC_Os01g31410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17172947	17174986	+	promoter,downstream
28	LOC_Os03g29222	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	16617298	16619580	+	promoter,downstream
28	LOC_Os03g35630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19736753	19737674	+	promoter
28	LOC_Os06g44720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	26990691	26991873	+	promoter,downstream
28	LOC_Os01g17120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	9837723	9841821	-	promoter
28	LOC_Os02g15594	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr2	8760001	8766267	+	promoter
28	LOC_Os11g46100	NBS-LRR type disease resistance protein, putative	gene	NBS-LRR type disease resistance protein, putative	chr11	27435847	27437430	+	promoter
28	LOC_Os08g37420	hypothetical protein	gene	hypothetical protein	chr8	23708559	23708897	+	promoter
28	LOC_Os01g45150	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	25621959	25622732	+	promoter
28	LOC_Os02g34060	hypothetical protein	gene	hypothetical protein	chr2	20347821	20349145	+	promoter
28	LOC_Os03g21700	DNA-binding protein, putative, expressed	gene	DNA-binding protein, putative, expressed	chr3	12388782	12390336	+	promoter
28	LOC_Os07g40220	expressed protein	gene	expressed protein	chr7	24114640	24115655	+	promoter
28	LOC_Os08g24550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14824668	14827352	-	promoter,downstream
28	LOC_Os05g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12755567	12758256	+	promoter
28	LOC_Os08g08510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4905805	4906095	+	promoter,downstream
28	LOC_Os06g25250	endoribonuclease Dicer, putative, expressed	gene	endoribonuclease Dicer, putative, expressed	chr6	14769313	14772945	+	promoter
28	LOC_Os03g49100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27962091	27964610	-	promoter
28	LOC_Os10g27070	hypothetical protein	gene	hypothetical protein	chr10	14199097	14199800	+	promoter
28	LOC_Os10g13940	MATE efflux protein, putative, expressed	gene	MATE efflux protein, putative, expressed	chr10	7589648	7595499	+	promoter
28	LOC_Os03g47320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	26761331	26763905	+	promoter
28	LOC_Os12g17070	radical SAM enzyme, putative, expressed	gene	radical SAM enzyme, putative, expressed	chr12	9764080	9769741	-	promoter
28	LOC_Os09g04080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2106355	2109601	-	promoter
28	LOC_Os01g31310	hypothetical protein	gene	hypothetical protein	chr1	17134643	17135264	+	promoter,downstream
28	LOC_Os12g08440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4289437	4291466	+	promoter,downstream
28	LOC_Os01g20070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11390411	11390752	-	promoter
28	LOC_Os04g59180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	35014880	35020654	-	promoter
28	LOC_Os05g27610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16007451	16009830	+	promoter
28	LOC_Os05g10410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5669062	5671978	+	promoter
28	LOC_Os05g20730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12162163	12164344	-	promoter
28	LOC_Os03g10970	hypothetical protein	gene	hypothetical protein	chr3	5634416	5636467	+	promoter
28	LOC_Os11g10040	mTERF family protein, expressed	gene	mTERF family protein, expressed	chr11	5368386	5371359	+	promoter
28	LOC_Os05g19150	hydrolase, alpha/beta fold family domain containing protein, expressed	gene	hydrolase, alpha/beta fold family domain containing protein, expressed	chr5	11114429	11116262	-	promoter
28	LOC_Os09g31940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	19045871	19047659	-	promoter
28	LOC_Os07g30540	variant latency associated nuclear antigen, putative	gene	variant latency associated nuclear antigen, putative	chr7	18064354	18065370	-	promoter
28	LOC_Os04g47430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	27957870	27959164	+	promoter
28	LOC_Os04g34120	expressed protein	gene	expressed protein	chr4	20508066	20508489	+	promoter
28	LOC_Os05g28830	PMR5, putative, expressed	gene	PMR5, putative, expressed	chr5	16836621	16838776	-	promoter
28	LOC_Os01g25960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	14720411	14723617	-	promoter,downstream
28	LOC_Os07g25420	26S proteasome non-ATPase regulatory subunit 8, putative, expressed	gene	26S proteasome non-ATPase regulatory subunit 8, putative, expressed	chr7	14526454	14529530	-	promoter
28	LOC_Os12g22900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	12929702	12930187	+	promoter,downstream
28	LOC_Os01g28350	hypothetical protein	gene	hypothetical protein	chr1	15880196	15880480	+	promoter,downstream
28	LOC_Os10g19314	hypothetical protein	gene	hypothetical protein	chr10	9773064	9773375	-	promoter
28	LOC_Os10g24500	hypothetical protein	gene	hypothetical protein	chr10	12504656	12505102	+	promoter
28	LOC_Os11g22720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12608623	12611424	-	promoter
28	LOC_Os08g35990	hypothetical protein	gene	hypothetical protein	chr8	22682520	22683504	+	promoter
28	LOC_Os01g32270	hypothetical protein	gene	hypothetical protein	chr1	17690836	17692631	+	promoter,downstream
28	LOC_Os12g17740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10154709	10160798	+	promoter,downstream
28	LOC_Os03g41879	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23254016	23254462	-	promoter
28	LOC_Os10g06660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3452898	3456598	+	promoter
28	LOC_Os09g10090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5497077	5498041	-	promoter,downstream
28	LOC_Os11g25590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14129033	14133595	+	promoter,downstream
28	LOC_Os12g14126	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr12	8013185	8017350	+	promoter
28	LOC_Os02g27330	expressed protein	gene	expressed protein	chr2	16098367	16098705	+	promoter
28	LOC_Os08g39800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25190435	25191100	-	promoter
28	LOC_Os02g25510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14894641	14895321	-	promoter,downstream
28	LOC_Os04g34570	expressed protein	gene	expressed protein	chr4	20742956	20748475	+	promoter
28	LOC_Os10g11340	nitroreductase family protein, putative, expressed	gene	nitroreductase family protein, putative, expressed	chr10	6303158	6307363	+	promoter
28	LOC_Os07g20590	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11902459	11902954	+	promoter
28	LOC_Os12g37340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	22894634	22900732	-	promoter
28	LOC_Os08g02660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	1105771	1106574	-	promoter
28	LOC_Os08g16190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9869799	9873222	+	promoter
28	LOC_Os08g03990	expressed protein	gene	expressed protein	chr8	1913037	1916257	+	promoter
28	LOC_Os11g22350	white-brown complex homolog protein, putative, expressed	gene	white-brown complex homolog protein, putative, expressed	chr11	12348280	12354622	-	promoter
28	LOC_Os09g14640	hypothetical protein	gene	hypothetical protein	chr9	8681707	8683764	-	promoter
28	LOC_Os04g31140	expressed protein	gene	expressed protein	chr4	18445220	18447521	+	promoter
28	LOC_Os11g10810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5947242	5948234	+	promoter
28	LOC_Os06g21270	glycine rich protein family protein, putative, expressed	gene	glycine rich protein family protein, putative, expressed	chr6	12296994	12297986	+	promoter
28	LOC_Os07g25060	thionin-like peptide, putative	gene	thionin-like peptide, putative	chr7	14302374	14302881	+	promoter
28	LOC_Os06g18150	expressed protein	gene	expressed protein	chr6	10558765	10562860	-	promoter
28	LOC_Os07g36390	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr7	21752829	21756329	+	promoter
28	LOC_Os09g03850	hypothetical protein	gene	hypothetical protein	chr9	1948777	1951120	+	promoter,downstream
28	LOC_Os04g18190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10046219	10047014	+	promoter,downstream
28	LOC_Os10g12680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	7084562	7085243	+	promoter,downstream
28	LOC_Os07g18070	expressed protein	gene	expressed protein	chr7	10692282	10692865	-	promoter
28	LOC_Os11g37830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21937513	21940703	-	promoter
28	LOC_Os10g12270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6844212	6847310	+	promoter,downstream
28	LOC_Os05g45170	glucosyl transferase, putative, expressed	gene	glucosyl transferase, putative, expressed	chr5	26160783	26161753	-	promoter
28	LOC_Os04g13920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7765942	7772610	-	promoter,downstream
28	LOC_Os05g00992	hypothetical protein	gene	hypothetical protein	chr5	10947	11429	-	promoter
28	LOC_Os03g40290	hypothetical protein	gene	hypothetical protein	chr3	22398361	22399083	-	promoter
28	LOC_Os05g24930	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr5	14370510	14374947	-	promoter
28	LOC_Os01g25140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14184135	14187440	-	promoter
28	LOC_Os03g61390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34833767	34836069	+	promoter
28	LOC_Os12g36140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22118132	22120811	-	promoter
28	LOC_Os07g14880	expressed protein	gene	expressed protein	chr7	8513839	8514393	-	promoter
28	LOC_Os02g46640	heat shock protein DnaJ, putative, expressed	gene	heat shock protein DnaJ, putative, expressed	chr2	28458620	28461493	-	promoter
28	LOC_Os06g44940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27178432	27178986	+	promoter
28	LOC_Os01g33230	UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed	gene	UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed	chr1	18297089	18302935	-	promoter
28	LOC_Os06g19880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	11365619	11366026	-	promoter
28	LOC_Os07g14870	hypothetical protein	gene	hypothetical protein	chr7	8508329	8510848	-	promoter,downstream
28	LOC_Os06g28880	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	16470615	16480722	-	promoter
28	LOC_Os04g38190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22541367	22548117	+	promoter,downstream
28	LOC_Os01g51190	expressed protein	gene	expressed protein	chr1	29422376	29427070	+	promoter
28	LOC_Os03g60020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	34130215	34135316	+	promoter
28	LOC_Os08g21840	50S ribosomal protein L15, putative, expressed	gene	50S ribosomal protein L15, putative, expressed	chr8	13070267	13073691	+	promoter
28	LOC_Os07g24240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13783362	13785002	-	promoter,downstream
28	LOC_Os12g17680	hypothetical protein	gene	hypothetical protein	chr12	10122582	10123528	-	promoter
28	LOC_Os04g23870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	13619747	13625905	+	promoter
28	LOC_Os10g40559	exostosin family domain containing protein, expressed	gene	exostosin family domain containing protein, expressed	chr10	21650231	21651818	+	promoter
28	LOC_Os01g29850	hypothetical protein	gene	hypothetical protein	chr1	16726018	16727831	+	promoter
28	LOC_Os11g21890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12099578	12103968	-	promoter,downstream
28	LOC_Os04g09320	hypothetical protein	gene	hypothetical protein	chr4	4944141	4944527	-	promoter,downstream
28	LOC_Os12g17760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10165091	10170562	+	promoter
28	LOC_Os07g16389	unknown	gene	unknown	chr7	9584419	9584780	-	promoter,downstream
28	LOC_Os01g06110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	2911904	2915104	-	promoter
28	LOC_Os10g37570	OsFBDUF49 - F-box and DUF domain containing protein, expressed	gene	OsFBDUF49 - F-box and DUF domain containing protein, expressed	chr10	20037460	20038794	+	promoter
28	LOC_Os05g21110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12411302	12414528	-	promoter
28	LOC_Os10g40170	expressed protein	gene	expressed protein	chr10	21433439	21434274	-	promoter
28	LOC_Os02g29820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17734541	17735537	-	promoter
28	LOC_Os10g14070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7671086	7672588	+	promoter,downstream
28	LOC_Os03g60830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34556318	34557543	-	promoter,downstream
28	LOC_Os05g06840	POLE2A - Putative DNA polymerase epsilon complex subunit, expressed	gene	POLE2A - Putative DNA polymerase epsilon complex subunit, expressed	chr5	3580546	3585712	+	promoter
28	LOC_Os07g29990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17661767	17666757	+	promoter
28	LOC_Os08g11150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6549528	6559282	-	promoter,downstream
28	LOC_Os01g22620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12722125	12723402	-	promoter
28	LOC_Os05g22770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12857186	12862015	-	promoter,downstream
28	LOC_Os01g24370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13739278	13740086	-	promoter,downstream
28	LOC_Os06g28610	hypothetical protein	gene	hypothetical protein	chr6	16278723	16279220	+	promoter,downstream
28	LOC_Os05g44500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25835544	25836659	+	promoter,downstream
28	LOC_Os01g44940	hypothetical protein	gene	hypothetical protein	chr1	25494193	25495280	-	promoter,downstream
28	LOC_Os09g18120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11103578	11105747	-	promoter,downstream
28	LOC_Os09g39800	hypothetical protein	gene	hypothetical protein	chr9	22817548	22817970	+	promoter
28	LOC_Os03g46590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	26364204	26368729	+	promoter
28	LOC_Os01g21850	protein transport protein-related, putative, expressed	gene	protein transport protein-related, putative, expressed	chr1	12257112	12262020	-	promoter
28	LOC_Os10g16800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	8294754	8299235	+	promoter,downstream
28	LOC_Os08g29300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17974847	17975500	-	promoter,downstream
28	LOC_Os12g09600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5055419	5057851	+	promoter
28	LOC_Os05g37849	unknown	gene	unknown	chr5	22111501	22111922	-	promoter
28	LOC_Os10g17270	hypothetical protein	gene	hypothetical protein	chr10	8611655	8614154	-	promoter,downstream
28	LOC_Os07g15480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8980295	8981918	+	promoter,downstream
28	LOC_Os06g18080	collagen adhesion protein, putative	gene	collagen adhesion protein, putative	chr6	10527665	10528955	+	promoter
28	LOC_Os11g26530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14739085	14739489	-	promoter,downstream
28	LOC_Os11g24720	protein binding protein, putative	gene	protein binding protein, putative	chr11	13621032	13622831	-	promoter
28	LOC_Os06g42290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25396662	25398869	+	promoter
28	LOC_Os02g21170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	12561046	12561513	-	promoter,downstream
28	LOC_Os04g07269	unknown	gene	unknown	chr4	3856763	3857620	+	promoter
28	LOC_Os02g27930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16521238	16522353	-	promoter,downstream
28	LOC_Os06g23250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	13571724	13572685	-	promoter
28	LOC_Os08g21190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12650619	12652798	-	promoter
28	LOC_Os02g38620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23334537	23337948	+	promoter,downstream
28	LOC_Os05g13700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7591836	7595173	+	promoter,downstream
28	LOC_Os08g19020	hypothetical protein	gene	hypothetical protein	chr8	11355634	11356227	+	promoter,downstream
28	LOC_Os04g08690	hypothetical protein	gene	hypothetical protein	chr4	4715436	4715924	-	promoter
28	LOC_Os11g35260	OsWAK118 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK118 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr11	20201483	20202160	-	promoter
28	LOC_Os10g42060	ribosome inactivating protein, putative, expressed	gene	ribosome inactivating protein, putative, expressed	chr10	22556437	22557626	+	promoter
28	LOC_Os04g12580	receptor-like protein kinase, putative	gene	receptor-like protein kinase, putative	chr4	6961871	6964307	-	promoter
28	LOC_Os01g28640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16023941	16024513	-	promoter
28	LOC_Os03g29470	transcription initiation factor IID, putative, expressed	gene	transcription initiation factor IID, putative, expressed	chr3	16793108	16798360	+	promoter
28	LOC_Os05g22410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12656827	12660809	+	promoter
28	LOC_Os12g07100	hypothetical protein	gene	hypothetical protein	chr12	3478314	3481494	-	promoter
28	LOC_Os02g44410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26890174	26893383	-	promoter
28	LOC_Os03g12090	expressed protein	gene	expressed protein	chr3	6341315	6350911	+	promoter
28	LOC_Os02g33060	expressed protein	gene	expressed protein	chr2	19639131	19640221	+	promoter
28	LOC_Os04g21460	hypothetical protein	gene	hypothetical protein	chr4	12129809	12130763	+	promoter,downstream
28	LOC_Os04g25010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14398800	14402045	+	promoter,downstream
28	LOC_Os09g13130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7567702	7569427	+	promoter,downstream
28	LOC_Os12g16780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9613620	9616924	+	promoter,downstream
28	LOC_Os08g19040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11362864	11363728	-	promoter,downstream
28	LOC_Os04g22170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12550050	12550952	+	promoter,downstream
28	LOC_Os01g35280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	19529520	19532852	-	promoter,downstream
28	LOC_Os12g38040	metallothionein family protein, expressed	gene	metallothionein family protein, expressed	chr12	23342782	23345765	-	promoter
28	LOC_Os12g14730	hypothetical protein	gene	hypothetical protein	chr12	8433510	8433800	+	promoter
28	LOC_Os03g36070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20012093	20014391	+	promoter,downstream
28	LOC_Os10g01330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	200222	202024	-	promoter,downstream
28	LOC_Os07g26020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14924331	14931633	+	promoter
28	LOC_Os07g26820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15515735	15517243	+	promoter
28	LOC_Os02g26700	cation transport regulator-like protein 1, putative, expressed	gene	cation transport regulator-like protein 1, putative, expressed	chr2	15670353	15673819	-	promoter,downstream
28	LOC_Os01g30990	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16937443	16938750	-	promoter
28	LOC_Os10g08750	hypothetical protein	gene	hypothetical protein	chr10	4760351	4761137	-	promoter
28	LOC_Os04g14080	hypothetical protein	gene	hypothetical protein	chr4	7853453	7854226	-	promoter,downstream
28	LOC_Os04g03960	hypothetical protein	gene	hypothetical protein	chr4	1802104	1802400	-	promoter,downstream
28	LOC_Os12g08950	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	4669957	4670280	+	promoter
28	LOC_Os08g22880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13766073	13769717	+	promoter,downstream
28	LOC_Os12g15820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9022518	9026786	-	promoter
28	LOC_Os12g15850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9033242	9035778	-	promoter,downstream
28	LOC_Os08g17170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10516431	10521628	-	promoter
28	LOC_Os12g16760	hypothetical protein	gene	hypothetical protein	chr12	9607250	9607930	+	promoter
28	LOC_Os05g26460	PROLM11 - Prolamin precursor, expressed	gene	PROLM11 - Prolamin precursor, expressed	chr5	15327376	15328041	+	promoter,downstream
28	LOC_Os05g23220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	13194844	13197837	-	promoter
28	LOC_Os11g22449	hypothetical protein	gene	hypothetical protein	chr11	12437148	12441814	+	promoter
28	LOC_Os08g10870	hypothetical protein	gene	hypothetical protein	chr8	6398884	6402757	+	promoter,downstream
28	LOC_Os11g22900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12704496	12705758	+	promoter
28	LOC_Os04g47120	acyl-CoA thioesterase 2, putative, expressed	gene	acyl-CoA thioesterase 2, putative, expressed	chr4	27798973	27805426	+	promoter
28	LOC_Os02g55756	hypothetical protein	gene	hypothetical protein	chr2	34132784	34133167	+	promoter,downstream
28	LOC_Os01g28070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15710126	15711423	+	promoter
28	LOC_Os07g18050	RNA-binding motif protein, putative, expressed	gene	RNA-binding motif protein, putative, expressed	chr7	10677648	10682117	-	promoter
28	LOC_Os07g20570	hypothetical protein	gene	hypothetical protein	chr7	11883926	11884710	-	promoter
28	LOC_Os12g30920	OsFBA4 - F-box and FBA domain containing protein, expressed	gene	OsFBA4 - F-box and FBA domain containing protein, expressed	chr12	18548423	18551937	+	promoter
28	LOC_Os11g05730	histone H3, putative, expressed	gene	histone H3, putative, expressed	chr11	2621566	2622187	-	promoter
28	LOC_Os11g21800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12042149	12043689	+	promoter,downstream
28	LOC_Os05g45360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26255122	26256078	+	promoter
28	LOC_Os06g12920	hypothetical protein	gene	hypothetical protein	chr6	7071754	7072192	+	promoter
28	LOC_Os10g06370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3277552	3278793	-	promoter,downstream
28	LOC_Os02g04600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2059024	2060523	+	promoter
28	LOC_Os02g45040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	27291101	27294246	-	promoter
28	LOC_Os10g27150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14236436	14238117	+	promoter
28	LOC_Os09g20630	ASC1, putative, expressed	gene	ASC1, putative, expressed	chr9	12427220	12429868	+	promoter
28	LOC_Os05g22930	CAAX amino terminal protease family protein, putative, expressed	gene	CAAX amino terminal protease family protein, putative, expressed	chr5	13000022	13003228	-	promoter
28	LOC_Os08g11950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7005067	7007512	-	promoter,downstream
28	LOC_Os03g39407	expressed protein	gene	expressed protein	chr3	21898924	21902741	+	promoter
28	LOC_Os11g24770	ankyrin repeat domain containing protein	gene	ankyrin repeat domain containing protein	chr11	13645885	13648247	-	promoter
28	LOC_Os03g31870	hypothetical protein	gene	hypothetical protein	chr3	18221840	18222262	-	promoter
28	LOC_Os07g27020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15652206	15652694	-	promoter,downstream
28	LOC_Os07g18710	OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed	gene	OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed	chr7	11059319	11060944	+	promoter
28	LOC_Os04g19980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11126776	11127790	-	promoter,downstream
28	LOC_Os07g23080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13017988	13019325	-	promoter,downstream
28	LOC_Os06g47090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28541584	28542121	+	promoter,downstream
28	LOC_Os10g17360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8674108	8680774	-	promoter,downstream
28	LOC_Os11g20060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11547665	11551749	-	promoter
28	LOC_Os12g27140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15925326	15926684	+	promoter,downstream
28	LOC_Os02g38610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23331972	23332415	+	promoter,downstream
28	LOC_Os04g22600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12786249	12792991	+	promoter,downstream
28	LOC_Os02g26070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15297636	15300878	-	promoter,downstream
28	LOC_Os11g11620	ZmEBE-1 protein, putative	gene	ZmEBE-1 protein, putative	chr11	6457975	6461032	+	promoter
28	LOC_Os06g34250	hypothetical protein	gene	hypothetical protein	chr6	19938090	19939931	-	promoter,downstream
28	LOC_Os11g39240	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	22901049	22901973	+	promoter,downstream
28	LOC_Os11g11450	hypothetical protein	gene	hypothetical protein	chr11	6357621	6358304	+	promoter
28	LOC_Os01g19650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	11141098	11147157	+	promoter,downstream
28	LOC_Os06g32070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18653051	18653767	-	promoter,downstream
28	LOC_Os08g13620	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr8	8095058	8101168	-	promoter
28	LOC_Os06g15060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8534254	8536857	-	promoter,downstream
28	LOC_Os05g06630	expressed protein	gene	expressed protein	chr5	3424642	3428803	+	promoter
28	LOC_Os12g34760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	21067543	21070331	+	promoter
28	LOC_Os01g50770	adaptor complexes medium subunit family domain containing protein, expressed	gene	adaptor complexes medium subunit family domain containing protein, expressed	chr1	29165374	29169366	+	promoter
28	LOC_Os05g20600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12089189	12089515	+	promoter,downstream
28	LOC_Os11g27520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15367656	15370618	-	promoter
28	LOC_Os03g31400	U-box domain-containing protein, putative, expressed	gene	U-box domain-containing protein, putative, expressed	chr3	17883675	17890797	+	promoter
28	LOC_Os08g23010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13858375	13858944	-	promoter,downstream
28	LOC_Os08g19500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11647868	11651159	+	promoter
28	LOC_Os01g16840	microneme protein Sm70, putative	gene	microneme protein Sm70, putative	chr1	9602123	9603163	-	promoter
28	LOC_Os03g36880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20461228	20464122	+	promoter
28	LOC_Os08g29140	hypothetical protein	gene	hypothetical protein	chr8	17839201	17839857	-	promoter
28	LOC_Os01g39500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	22263082	22263306	+	promoter,downstream
28	LOC_Os10g08560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4669999	4670999	+	promoter
28	LOC_Os02g49510	amino acid transporter, putative, expressed	gene	amino acid transporter, putative, expressed	chr2	30253564	30257638	-	promoter
28	LOC_Os12g03580	hypothetical protein	gene	hypothetical protein	chr12	1432889	1435183	+	promoter
28	LOC_Os08g19570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11695227	11696342	+	promoter
28	LOC_Os10g26880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14061450	14065147	+	promoter
28	LOC_Os01g53440	hypothetical protein	gene	hypothetical protein	chr1	30707236	30707637	+	promoter
28	LOC_Os02g02260	hypothetical protein	gene	hypothetical protein	chr2	738922	739370	-	promoter,downstream
28	LOC_Os11g27460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15345265	15345490	+	promoter,downstream
28	LOC_Os07g35170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21057490	21058398	-	promoter
28	LOC_Os06g36600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21506291	21506987	+	promoter
28	LOC_Os02g40000	trafficking protein particle complex subunit, putative, expressed	gene	trafficking protein particle complex subunit, putative, expressed	chr2	24190188	24195562	+	promoter
28	LOC_Os05g08060	hypothetical protein	gene	hypothetical protein	chr5	4389081	4389350	+	promoter,downstream
28	LOC_Os05g25740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14915965	14917074	-	promoter,downstream
28	LOC_Os10g08820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4784818	4789383	+	promoter
28	LOC_Os07g17770	tryptophanyl-tRNA synthetase, cytoplasmic, putative	gene	tryptophanyl-tRNA synthetase, cytoplasmic, putative	chr7	10498771	10501938	+	promoter
28	LOC_Os09g06190	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2896735	2897376	-	promoter
28	LOC_Os02g55800	hypothetical protein	gene	hypothetical protein	chr2	34158581	34160484	-	promoter,downstream
28	LOC_Os04g32500	hypothetical protein	gene	hypothetical protein	chr4	19369587	19370484	-	promoter
28	LOC_Os09g17430	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	10659463	10660275	+	promoter
28	LOC_Os05g19840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11552119	11554307	-	promoter,downstream
28	LOC_Os04g25480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14763990	14765697	-	promoter,downstream
28	LOC_Os05g26810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15490285	15496904	-	promoter
28	LOC_Os12g10810	expressed protein	gene	expressed protein	chr12	5816151	5818136	+	promoter
28	LOC_Os07g16010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9329918	9330544	-	promoter,downstream
28	LOC_Os12g25560	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	14788134	14788568	+	promoter
28	LOC_Os12g30900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	18530083	18532210	-	promoter,downstream
28	LOC_Os04g14470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8093250	8094257	-	promoter
28	LOC_Os12g29790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17776955	17777251	-	promoter,downstream
28	LOC_Os04g10680	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr4	5797494	5806590	+	promoter
28	LOC_Os10g12290	expressed protein	gene	expressed protein	chr10	6851875	6856915	-	promoter
28	LOC_Os06g32020	THION6 - Plant thionin family protein precursor, expressed	gene	THION6 - Plant thionin family protein precursor, expressed	chr6	18614686	18615806	-	promoter
28	LOC_Os07g22024	zinc finger family protein, putative, expressed	gene	zinc finger family protein, putative, expressed	chr7	12312500	12324686	-	promoter
28	LOC_Os04g16300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8848177	8850692	+	promoter,downstream
28	LOC_Os04g24260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13887848	13892320	-	promoter
28	LOC_Os11g27890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15588181	15590739	+	promoter,downstream
28	LOC_Os08g34940	hypothetical protein	gene	hypothetical protein	chr8	21996263	21996520	+	promoter
28	LOC_Os11g25600	hypothetical protein	gene	hypothetical protein	chr11	14140098	14140928	-	promoter
28	LOC_Os11g26000	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14406142	14408436	+	promoter,downstream
28	LOC_Os06g44730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26998096	27001620	+	promoter
28	LOC_Os02g34380	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	20566402	20569165	+	promoter
28	LOC_Os07g45640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27247324	27248085	+	promoter,downstream
28	LOC_Os01g49110	prenyltransferase, putative, expressed	gene	prenyltransferase, putative, expressed	chr1	28230373	28234376	+	promoter
28	LOC_Os12g29380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17447314	17451882	-	promoter,downstream
28	LOC_Os07g17920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10603366	10604157	-	promoter,downstream
28	LOC_Os06g14820	expressed protein	gene	expressed protein	chr6	8413998	8415786	+	promoter
28	LOC_Os12g31030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18609216	18612548	-	promoter
28	LOC_Os08g07140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	3997152	4000388	-	promoter
28	LOC_Os10g17010	hypothetical protein	gene	hypothetical protein	chr10	8447022	8447876	+	promoter,downstream
28	LOC_Os02g42350	nitrilase, putative, expressed	gene	nitrilase, putative, expressed	chr2	25459837	25463749	+	promoter
28	LOC_Os04g55350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	32739153	32741383	+	promoter
28	LOC_Os08g16490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10107280	10108188	-	promoter
28	LOC_Os10g07310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3857991	3860285	+	promoter
28	LOC_Os05g20440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11995731	11996294	+	promoter,downstream
28	LOC_Os12g02620	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr12	905322	907669	+	promoter
28	LOC_Os12g26800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15697395	15698495	-	promoter,downstream
28	LOC_Os04g58160	fiber protein Fb34, putative, expressed	gene	fiber protein Fb34, putative, expressed	chr4	34454298	34459501	+	promoter
28	LOC_Os11g34350	ATP-binding cassette sub-family E member 1, putative, expressed	gene	ATP-binding cassette sub-family E member 1, putative, expressed	chr11	19662909	19668267	+	promoter
28	LOC_Os08g24080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14547169	14549941	+	promoter,downstream
28	LOC_Os01g47930	hypothetical protein	gene	hypothetical protein	chr1	27431028	27431246	+	promoter
28	LOC_Os04g13400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7455205	7457553	-	promoter,downstream
28	LOC_Os08g07380	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	4131498	4142564	-	promoter
28	LOC_Os04g05540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2795247	2796942	+	promoter
28	LOC_Os01g23060	hypothetical protein	gene	hypothetical protein	chr1	12973499	12973702	+	promoter,downstream
28	LOC_Os07g16740	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	9819741	9820352	+	promoter
28	LOC_Os11g14670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8262401	8263381	+	promoter,downstream
28	LOC_Os09g01280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	237465	239666	+	promoter
28	LOC_Os03g26590	expressed protein	gene	expressed protein	chr3	15187760	15194506	+	promoter
28	LOC_Os06g32330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18816252	18816728	+	promoter
28	LOC_Os08g10040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5822269	5822601	+	promoter,downstream
28	LOC_Os09g24050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14305513	14307955	-	promoter,downstream
28	LOC_Os08g21260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12693152	12693556	+	promoter,downstream
28	LOC_Os10g32570	tRNA synthetase class I family protein, putative	gene	tRNA synthetase class I family protein, putative	chr10	16991986	16995373	+	promoter
28	LOC_Os04g18260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10087194	10089832	+	promoter,downstream
28	LOC_Os04g13720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7644306	7646954	+	promoter,downstream
28	LOC_Os07g45700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27281996	27285626	-	promoter,downstream
28	LOC_Os10g31580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16473304	16474707	+	promoter,downstream
28	LOC_Os04g20380	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	11393358	11393644	+	promoter
28	LOC_Os07g24510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13947722	13950273	-	promoter,downstream
28	LOC_Os06g50650	plastocyanin-like domain containing protein, putative, expressed	gene	plastocyanin-like domain containing protein, putative, expressed	chr6	30657369	30658204	-	promoter
28	LOC_Os03g18660	expressed protein	gene	expressed protein	chr3	10451167	10452194	+	promoter
28	LOC_Os09g26630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	16156642	16158220	+	promoter
28	LOC_Os06g06260	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr6	2897785	2899618	+	promoter
28	LOC_Os06g25000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14644242	14645108	-	promoter
28	LOC_Os04g18870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10490648	10491559	+	promoter,downstream
28	LOC_Os10g03090	expressed protein	gene	expressed protein	chr10	1299966	1300340	+	promoter
28	LOC_Os11g39200	hAT dimerisation domain containing protein	gene	hAT dimerisation domain containing protein	chr11	22876120	22878518	-	promoter
28	LOC_Os02g25550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14920672	14923749	+	promoter,downstream
28	LOC_Os04g26320	mannose-binding lectin, putative, expressed	gene	mannose-binding lectin, putative, expressed	chr4	15333264	15336511	-	promoter
28	LOC_Os04g12330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6803733	6804158	+	promoter,downstream
28	LOC_Os12g25750	hypothetical protein	gene	hypothetical protein	chr12	14926760	14927694	+	promoter
28	LOC_Os09g03670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1844736	1845422	-	promoter
28	LOC_Os04g13700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7636834	7641761	+	promoter
28	LOC_Os02g12110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6298111	6298881	-	promoter
28	LOC_Os12g27680	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	16305719	16306579	-	promoter
28	LOC_Os02g29930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	17789041	17790381	+	promoter,downstream
28	LOC_Os05g09440	NADP-dependent malic enzyme, chloroplast precursor, putative, expressed	gene	NADP-dependent malic enzyme, chloroplast precursor, putative, expressed	chr5	5293533	5297397	-	promoter
28	LOC_Os02g12850	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr2	6784169	6788332	-	promoter
28	LOC_Os10g01370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	222533	222979	-	promoter
28	LOC_Os04g07670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4077596	4082463	+	promoter
28	LOC_Os06g40400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24055973	24056977	-	promoter,downstream
28	LOC_Os09g01040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	71417	73947	-	promoter
28	LOC_Os05g02300	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	gene	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	chr5	738204	739079	+	promoter
28	LOC_Os05g18990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11019822	11022090	+	promoter,downstream
28	LOC_Os05g18446	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	10662068	10662869	-	promoter,downstream
28	LOC_Os04g13410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7458248	7460649	+	promoter
28	LOC_Os05g28270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	16490760	16492761	-	promoter
28	LOC_Os08g11140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6547586	6548065	+	promoter,downstream
28	LOC_Os06g10370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	5326809	5329732	+	promoter,downstream
28	LOC_Os07g05850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	2809206	2812893	-	promoter
28	LOC_Os10g05050	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	2470556	2471430	-	promoter
28	LOC_Os08g42810	hypothetical protein	gene	hypothetical protein	chr8	27072402	27072614	-	promoter,downstream
28	LOC_Os04g27910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16311207	16314427	-	promoter
28	LOC_Os03g10960	hypothetical protein	gene	hypothetical protein	chr3	5632319	5632852	-	promoter,downstream
28	LOC_Os04g13940	hypothetical protein	gene	hypothetical protein	chr4	7785494	7785919	+	promoter,downstream
28	LOC_Os03g38610	OsMADS87 - MADS-box family gene with M-gamma type-box	gene	OsMADS87 - MADS-box family gene with M-gamma type-box	chr3	21427031	21427780	-	promoter,downstream
28	LOC_Os01g16790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9536203	9542212	-	promoter
28	LOC_Os02g33540	translational activator family protein, putative, expressed	gene	translational activator family protein, putative, expressed	chr2	19936642	19942502	+	promoter
28	LOC_Os04g33780	OTU-like cysteine protease family protein, putative, expressed	gene	OTU-like cysteine protease family protein, putative, expressed	chr4	20285965	20291159	+	promoter
28	LOC_Os04g28760	hypothetical protein	gene	hypothetical protein	chr4	16861007	16861718	-	promoter
28	LOC_Os05g30380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17546583	17553581	-	promoter
28	LOC_Os04g16980	hypothetical protein	gene	hypothetical protein	chr4	9289200	9291046	-	promoter
28	LOC_Os03g43390	F-box/LRR domain containing protein, putative, expressed	gene	F-box/LRR domain containing protein, putative, expressed	chr3	24187896	24195477	+	promoter
28	LOC_Os06g23900	hypothetical protein	gene	hypothetical protein	chr6	13965723	13966055	-	promoter
28	LOC_Os05g16790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9558527	9565240	+	promoter,downstream
28	LOC_Os10g23250	hypothetical protein	gene	hypothetical protein	chr10	12061458	12063895	+	promoter
28	LOC_Os07g22890	hypothetical protein	gene	hypothetical protein	chr7	12901011	12902864	+	promoter
28	LOC_Os04g16712	chloroplast 30S ribosomal protein S7, putative	gene	chloroplast 30S ribosomal protein S7, putative	chr4	9086099	9086569	-	promoter
28	LOC_Os12g14800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8461001	8467677	+	promoter,downstream
28	LOC_Os08g19730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11810708	11811775	-	promoter,downstream
28	LOC_Os06g50569	hypothetical protein	gene	hypothetical protein	chr6	30612988	30613434	+	promoter
28	LOC_Os04g43480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	25537943	25540873	-	promoter,downstream
28	LOC_Os08g21720	rhamnogalacturonate lyase, putative	gene	rhamnogalacturonate lyase, putative	chr8	13015067	13015485	-	promoter
28	LOC_Os04g23390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13367820	13370671	+	promoter
28	LOC_Os01g57830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	33441762	33445668	+	promoter
28	LOC_Os08g34600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21737715	21741040	-	promoter
28	LOC_Os02g16320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9280471	9281274	+	promoter
28	LOC_Os05g23790	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	13605907	13609502	+	promoter
28	LOC_Os01g22289	hypothetical protein	gene	hypothetical protein	chr1	12533093	12533356	+	promoter,downstream
28	LOC_Os07g31950	hypothetical protein	gene	hypothetical protein	chr7	19005124	19005797	+	promoter
28	LOC_Os05g17920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10305269	10306506	+	promoter,downstream
28	LOC_Os08g40760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	25785204	25786133	+	promoter,downstream
28	LOC_Os02g18220	hypothetical protein	gene	hypothetical protein	chr2	10579620	10579871	+	promoter
28	LOC_Os04g42174	expressed protein	gene	expressed protein	chr4	24777696	24781406	+	promoter
28	LOC_Os05g51770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29640975	29645538	-	promoter
28	LOC_Os04g54540	hypothetical protein	gene	hypothetical protein	chr4	32253474	32254369	-	promoter
28	LOC_Os07g14514	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	8263776	8277973	-	promoter,downstream
28	LOC_Os05g33860	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	19914835	19915886	+	promoter,downstream
28	LOC_Os05g44510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25839410	25841390	+	promoter,downstream
28	LOC_Os08g42950	haloacid dehalogenase-like hydrolase family protein, putative, expressed	gene	haloacid dehalogenase-like hydrolase family protein, putative, expressed	chr8	27139546	27142255	+	promoter
28	LOC_Os11g46020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27384774	27387326	-	promoter
28	LOC_Os01g53720	expressed protein	gene	expressed protein	chr1	30877956	30885294	+	promoter
28	LOC_Os06g35490	peroxidase precursor, putative	gene	peroxidase precursor, putative	chr6	20687531	20690748	-	promoter
28	LOC_Os08g15440	hypothetical protein	gene	hypothetical protein	chr8	9390943	9393068	+	promoter
28	LOC_Os10g19850	expressed protein	gene	expressed protein	chr10	9824659	9826118	-	promoter
28	LOC_Os06g51300	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	31062170	31062451	+	promoter
28	LOC_Os02g37740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22768845	22771053	+	promoter
28	LOC_Os08g30980	hypothetical protein	gene	hypothetical protein	chr8	19121719	19125014	+	promoter
28	LOC_Os05g07490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4000596	4001867	-	promoter,downstream
28	LOC_Os10g16850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8320599	8323736	+	promoter
28	LOC_Os11g30970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17551215	17554580	+	promoter,downstream
28	LOC_Os11g20620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11945783	11946757	-	promoter,downstream
28	LOC_Os08g40490	BTB/POZ domain containing protein	gene	BTB/POZ domain containing protein	chr8	25607632	25613298	+	promoter
28	LOC_Os02g13470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	7192204	7198866	-	promoter,downstream
28	LOC_Os09g03340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1620699	1621613	+	promoter,downstream
28	LOC_Os02g25280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	14724820	14729038	-	promoter
28	LOC_Os08g13520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8037664	8039711	-	promoter,downstream
28	LOC_Os05g24820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14331760	14332506	-	promoter
28	LOC_Os06g47520	expressed protein	gene	expressed protein	chr6	28767496	28770069	+	promoter
28	LOC_Os05g37970	universal stress protein domain containing protein, putative, expressed	gene	universal stress protein domain containing protein, putative, expressed	chr5	22213487	22216650	+	promoter
28	LOC_Os07g29090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17043325	17044197	-	promoter,downstream
28	LOC_Os03g19120	MYB family transcription factor, putative	gene	MYB family transcription factor, putative	chr3	10706116	10711931	-	promoter
28	LOC_Os07g17680	ribosomal RNA apurinic site specific lyase, putative	gene	ribosomal RNA apurinic site specific lyase, putative	chr7	10433693	10435096	+	promoter
28	LOC_Os03g41500	hypothetical protein	gene	hypothetical protein	chr3	23081186	23081452	-	promoter
28	LOC_Os02g18520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10792693	10797079	+	promoter
28	LOC_Os03g38440	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr3	21333324	21336358	+	promoter
28	LOC_Os07g16640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9768445	9769365	+	promoter,downstream
28	LOC_Os03g33860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19339232	19340374	+	promoter
28	LOC_Os07g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14094949	14098672	+	promoter
28	LOC_Os01g73390	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	42531207	42532909	-	promoter
28	LOC_Os04g35460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21407300	21409442	-	promoter,downstream
28	LOC_Os03g33760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19297356	19302909	+	promoter,downstream
28	LOC_Os09g11580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6458349	6467810	-	promoter
28	LOC_Os06g03300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1255415	1257055	+	promoter
28	LOC_Os05g45630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	26383411	26387985	-	promoter
28	LOC_Os07g32250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19166307	19172486	+	promoter
28	LOC_Os10g22910	hypothetical protein	gene	hypothetical protein	chr10	11833042	11833272	+	promoter
28	LOC_Os01g37070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20684270	20690617	+	promoter
28	LOC_Os10g01630	hypothetical protein	gene	hypothetical protein	chr10	423848	424589	-	promoter
28	LOC_Os08g13550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8052425	8053158	+	promoter,downstream
28	LOC_Os01g23230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13063619	13064377	+	promoter
28	LOC_Os10g23240	hypothetical protein	gene	hypothetical protein	chr10	12051606	12051888	-	promoter
28	LOC_Os08g15970	hypothetical protein	gene	hypothetical protein	chr8	9723628	9725045	-	promoter,downstream
28	LOC_Os08g22030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13299597	13304841	+	promoter
28	LOC_Os05g10260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5579497	5582745	-	promoter,downstream
28	LOC_Os11g41460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24404979	24406985	+	promoter
28	LOC_Os12g17010	PROLM29 - Prolamin precursor, expressed	gene	PROLM29 - Prolamin precursor, expressed	chr12	9730682	9731761	+	promoter,downstream
28	LOC_Os01g52851	expressed protein	gene	expressed protein	chr1	30391695	30394428	+	promoter
28	LOC_Os11g39880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23306405	23308382	-	promoter,downstream
28	LOC_Os12g20290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11847512	11849906	+	promoter
28	LOC_Os07g33520	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	20031022	20031414	+	promoter
28	LOC_Os06g22925	hypothetical protein	gene	hypothetical protein	chr6	13378396	13378732	-	promoter,downstream
28	LOC_Os08g20220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12128792	12138872	+	promoter
28	LOC_Os09g14620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8670528	8673278	+	promoter
28	LOC_Os05g06650	expressed protein	gene	expressed protein	chr5	3434445	3438299	+	promoter
28	LOC_Os04g41890	hypothetical protein	gene	hypothetical protein	chr4	24640391	24642484	-	promoter
28	LOC_Os02g30940	hypothetical protein	gene	hypothetical protein	chr2	18473317	18475479	-	promoter
28	LOC_Os11g11830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6563421	6565247	-	promoter,downstream
28	LOC_Os10g14220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7722451	7722748	+	promoter
28	LOC_Os03g33920	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	19361589	19362281	+	promoter,downstream
28	LOC_Os08g03930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1866813	1872613	+	promoter
28	LOC_Os12g28390	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	16778917	16780505	-	promoter,downstream
28	LOC_Os03g36100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20025850	20026659	+	promoter
28	LOC_Os10g42390	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr10	22746551	22747144	+	promoter
28	LOC_Os11g30090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17036922	17039044	+	promoter
28	LOC_Os04g18460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10184182	10190037	-	promoter
28	LOC_Os10g14290	hypothetical protein	gene	hypothetical protein	chr10	7753904	7755853	-	promoter,downstream
28	LOC_Os08g15040	ADP-ribosylation factor, putative, expressed	gene	ADP-ribosylation factor, putative, expressed	chr8	9080490	9085618	+	promoter
28	LOC_Os07g26860	hypothetical protein	gene	hypothetical protein	chr7	15541710	15544884	+	promoter,downstream
28	LOC_Os10g32348	PsbP, putative	gene	PsbP, putative	chr10	16900432	16905520	-	promoter
28	LOC_Os05g18570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10749182	10754017	+	promoter
28	LOC_Os01g35450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19615028	19619886	+	promoter,downstream
28	LOC_Os08g06060	CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	gene	CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	chr8	3306523	3309593	+	promoter
28	LOC_Os07g30450	hypothetical protein	gene	hypothetical protein	chr7	18022618	18023221	-	promoter
28	LOC_Os03g23160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13383920	13385077	+	promoter,downstream
28	LOC_Os05g11500	hypothetical protein	gene	hypothetical protein	chr5	6512432	6513205	-	promoter
28	LOC_Os09g27810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16918029	16922578	-	promoter
28	LOC_Os12g18310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10563911	10565021	+	promoter,downstream
28	LOC_Os05g03780	cation efflux family protein, putative, expressed	gene	cation efflux family protein, putative, expressed	chr5	1675472	1679040	-	promoter
28	LOC_Os10g25540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	13139593	13141497	-	promoter
28	LOC_Os01g37060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20675019	20681768	-	promoter,downstream
28	LOC_Os09g13530	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	gene	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	chr9	7842134	7843185	+	promoter
28	LOC_Os08g22930	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	13782309	13784581	-	promoter,downstream
28	LOC_Os11g19920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11462364	11463209	-	promoter,downstream
28	LOC_Os10g01134	OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed	chr10	109138	115454	-	promoter
28	LOC_Os05g01160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	134266	135141	+	promoter
28	LOC_Os11g38410	hypothetical protein	gene	hypothetical protein	chr11	22280878	22281312	-	promoter
28	LOC_Os04g31320	SWIB/MDM2 domain containing protein, expressed	gene	SWIB/MDM2 domain containing protein, expressed	chr4	18563504	18566100	+	promoter
28	LOC_Os09g12740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7305638	7306849	+	promoter,downstream
28	LOC_Os08g27620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16830470	16830979	-	promoter
28	LOC_Os09g08400	hypothetical protein	gene	hypothetical protein	chr9	4358015	4359123	-	promoter,downstream
28	LOC_Os03g35950	expressed protein	gene	expressed protein	chr3	19945851	19946722	+	promoter,downstream
28	LOC_Os01g34420	expressed protein	gene	expressed protein	chr1	18976379	18977275	+	promoter
28	LOC_Os08g22980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13819036	13820009	-	promoter,downstream
28	LOC_Os09g32400	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	19348393	19350967	-	promoter
28	LOC_Os02g18280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10600289	10603328	+	promoter
28	LOC_Os01g56280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	32414031	32416267	+	promoter
28	LOC_Os09g26740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	16244789	16245313	+	promoter,downstream
28	LOC_Os06g19940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	11415740	11421385	-	promoter
28	LOC_Os09g28610	protein transport protein, putative, expressed	gene	protein transport protein, putative, expressed	chr9	17404810	17412208	+	promoter
28	LOC_Os02g32930	bile acid sodium symporter, putative, expressed	gene	bile acid sodium symporter, putative, expressed	chr2	19543855	19550635	+	promoter
28	LOC_Os10g18970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9586780	9587895	-	promoter,downstream
28	LOC_Os01g29890	hypothetical protein	gene	hypothetical protein	chr1	16742155	16742427	-	promoter
28	LOC_Os12g25400	expressed protein	gene	expressed protein	chr12	14649874	14650309	+	promoter
28	LOC_Os04g06130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3180198	3187681	-	promoter,downstream
28	LOC_Os08g01180	nicalin, putative, expressed	gene	nicalin, putative, expressed	chr8	114025	120121	-	promoter
28	LOC_Os04g09430	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr4	5035789	5038442	-	promoter
28	LOC_Os03g33110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18946867	18948886	+	promoter
28	LOC_Os07g10860	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	5930014	5938270	+	promoter
28	LOC_Os10g09600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	5203950	5204390	+	promoter
28	LOC_Os08g20937	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12540302	12541527	+	promoter
28	LOC_Os08g11280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6631102	6633911	+	promoter,downstream
28	LOC_Os10g20950	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	10533300	10533608	+	promoter
28	LOC_Os05g25720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14903388	14906420	+	promoter,downstream
28	LOC_Os05g26890	G-protein alpha subunit, putative, expressed	gene	G-protein alpha subunit, putative, expressed	chr5	15552385	15556024	-	promoter
28	LOC_Os01g23650	hypothetical protein	gene	hypothetical protein	chr1	13308952	13309290	+	promoter
28	LOC_Os08g02480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1000758	1003248	-	promoter
28	LOC_Os04g13120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7235034	7236158	-	promoter
28	LOC_Os07g27720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16166275	16169846	-	promoter
28	LOC_Os10g17210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8576232	8578159	+	promoter
28	LOC_Os09g09100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4863645	4867635	-	promoter,downstream
28	LOC_Os06g40300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23994715	23995490	-	promoter,downstream
28	LOC_Os06g39220	hypothetical protein	gene	hypothetical protein	chr6	23283633	23284301	-	promoter
28	LOC_Os06g38360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22730001	22732970	-	promoter
28	LOC_Os10g07200	hsp20/alpha crystallin family protein, putative, expressed	gene	hsp20/alpha crystallin family protein, putative, expressed	chr10	3778615	3780597	-	promoter
28	LOC_Os11g25290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13946005	13948978	-	promoter,downstream
28	LOC_Os07g11210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6171081	6172102	+	promoter,downstream
28	LOC_Os08g11660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6838535	6839347	-	promoter
28	LOC_Os04g04470	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	2119817	2120386	-	promoter,downstream
28	LOC_Os07g17930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10606984	10607550	+	promoter,downstream
28	LOC_Os06g15210	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	8618081	8619373	+	promoter
28	LOC_Os02g18810	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr2	10960619	10968057	+	promoter
28	LOC_Os05g16070	hypothetical protein	gene	hypothetical protein	chr5	9071660	9075166	-	promoter
28	LOC_Os08g24130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14568796	14571552	-	promoter
28	LOC_Os03g42290	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr3	23531637	23537039	+	promoter
28	LOC_Os01g17260	transcription factor, putative, expressed	gene	transcription factor, putative, expressed	chr1	9927842	9934957	+	promoter
28	LOC_Os01g37560	chaperone protein dnaJ 49, putative, expressed	gene	chaperone protein dnaJ 49, putative, expressed	chr1	20986715	20991489	+	promoter
28	LOC_Os07g25800	OsFBDUF37 - F-box and DUF domain containing protein, expressed	gene	OsFBDUF37 - F-box and DUF domain containing protein, expressed	chr7	14819657	14821255	+	promoter
28	LOC_Os03g32660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18705950	18706492	-	promoter,downstream
28	LOC_Os01g74680	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	43256576	43262253	+	promoter
28	LOC_Os05g34940	OsMADS4 - MADS-box family gene with MIKCc type-box, expressed	gene	OsMADS4 - MADS-box family gene with MIKCc type-box, expressed	chr5	20696887	20700103	+	promoter
28	LOC_Os10g12440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6940809	6942019	+	promoter
28	LOC_Os11g24020	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	13154544	13155368	+	promoter,downstream
28	LOC_Os05g17000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9697467	9704190	+	promoter,downstream
28	LOC_Os05g23770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	13593875	13596913	+	promoter
28	LOC_Os10g25530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	13128671	13135329	+	promoter,downstream
28	LOC_Os07g27610	hypothetical protein	gene	hypothetical protein	chr7	16128701	16128961	+	promoter
28	LOC_Os08g10420	transferase family domain containing protein, expressed	gene	transferase family domain containing protein, expressed	chr8	6120823	6122646	-	promoter
28	LOC_Os12g38970	VIP4, putative, expressed	gene	VIP4, putative, expressed	chr12	23926973	23934519	+	promoter
28	LOC_Os09g14980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8991834	8992661	-	promoter
28	LOC_Os02g34000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	20288050	20291354	-	promoter
28	LOC_Os09g03990	expressed protein	gene	expressed protein	chr9	2047654	2048740	+	promoter
28	LOC_Os12g14880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8513001	8513687	+	promoter
28	LOC_Os02g22520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13436678	13441240	-	promoter,downstream
28	LOC_Os06g30910	CAAX amino terminal protease family protein, putative, expressed	gene	CAAX amino terminal protease family protein, putative, expressed	chr6	17972894	17977693	+	promoter
28	LOC_Os01g27570	hypothetical protein	gene	hypothetical protein	chr1	15383871	15384420	-	promoter
28	LOC_Os05g26100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15118886	15122452	+	promoter
28	LOC_Os08g23540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14248074	14250314	-	promoter,downstream
28	LOC_Os04g16280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8841162	8843229	+	promoter,downstream
28	LOC_Os03g39690	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr3	22081722	22084673	+	promoter
28	LOC_Os05g17620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10137465	10139532	+	promoter,downstream
28	LOC_Os12g24450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13947486	13953616	+	promoter
28	LOC_Os09g10600	enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed	gene	enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed	chr9	5780818	5785018	+	promoter
28	LOC_Os05g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6624613	6626681	-	promoter
28	LOC_Os11g19510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11237552	11239632	+	promoter
28	LOC_Os11g20350	hypothetical protein	gene	hypothetical protein	chr11	11766426	11766767	+	promoter
28	LOC_Os04g29340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17241793	17243489	-	promoter
28	LOC_Os10g05700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2873179	2873730	+	promoter,downstream
28	LOC_Os03g61380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34829297	34830283	-	promoter,downstream
28	LOC_Os06g32890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19137332	19143984	-	promoter,downstream
28	LOC_Os03g21780	pentatricopeptide repeat domain containing protein, putative, expressed	gene	pentatricopeptide repeat domain containing protein, putative, expressed	chr3	12443641	12446646	+	promoter
28	LOC_Os05g11890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	6771949	6772365	+	promoter
28	LOC_Os01g25900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14692210	14695344	-	promoter,downstream
28	LOC_Os06g27390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15509210	15509959	+	promoter
28	LOC_Os06g28700	hypothetical protein	gene	hypothetical protein	chr6	16341336	16341614	-	promoter
28	LOC_Os06g15920	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9057156	9060379	+	promoter
28	LOC_Os08g29060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17793934	17795809	+	promoter
28	LOC_Os04g21560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12175639	12180216	-	promoter
28	LOC_Os04g05930	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3063605	3065304	-	promoter,downstream
28	LOC_Os10g16824	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	8308299	8314505	-	promoter
28	LOC_Os09g19760	hypothetical protein	gene	hypothetical protein	chr9	11825690	11825929	+	promoter
28	LOC_Os10g09440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5105605	5111912	-	promoter,downstream
28	LOC_Os10g05440	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	2681232	2683308	+	promoter
28	LOC_Os10g03980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1813448	1813978	+	promoter,downstream
28	LOC_Os11g35120	OsWAK116 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK116 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr11	20122967	20125006	-	promoter
28	LOC_Os11g40564	hypothetical protein	gene	hypothetical protein	chr11	23742288	23743385	-	promoter
28	LOC_Os10g24180	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	12315887	12316417	+	promoter
28	LOC_Os06g26330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15412135	15412773	+	promoter
28	LOC_Os01g44160	hypothetical protein	gene	hypothetical protein	chr1	25311362	25311748	-	promoter
28	LOC_Os03g16570	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr3	9131732	9135634	+	promoter
28	LOC_Os08g35460	hypothetical protein	gene	hypothetical protein	chr8	22349023	22349313	+	promoter
28	LOC_Os02g46080	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr2	28072953	28075904	-	promoter
28	LOC_Os03g54820	hypothetical protein	gene	hypothetical protein	chr3	31158571	31159566	+	promoter
28	LOC_Os05g30840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17835317	17836210	-	promoter,downstream
28	LOC_Os02g26230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15401669	15404723	+	promoter,downstream
28	LOC_Os11g45440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27041220	27042672	-	promoter
28	LOC_Os12g01480	phosphatidate cytidylyltransferase, putative, expressed	gene	phosphatidate cytidylyltransferase, putative, expressed	chr12	288600	290513	-	promoter,downstream
28	LOC_Os04g27570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16141585	16142742	-	promoter,downstream
28	LOC_Os06g19840	hypothetical protein	gene	hypothetical protein	chr6	11330739	11331677	-	promoter
28	LOC_Os10g25120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12890670	12893413	+	promoter
28	LOC_Os03g27440	hypothetical protein	gene	hypothetical protein	chr3	15743948	15744553	+	promoter
28	LOC_Os04g01900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	565523	566353	+	promoter
28	LOC_Os03g33042	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18899017	18900258	+	promoter,downstream
28	LOC_Os07g45140	hypothetical protein	gene	hypothetical protein	chr7	26946590	26946925	+	promoter
28	LOC_Os10g28900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	14990593	14991183	+	promoter
28	LOC_Os02g38290	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr2	23146820	23149029	-	promoter
28	LOC_Os05g18730	generative cell specific-1, putative, expressed	gene	generative cell specific-1, putative, expressed	chr5	10847677	10854631	-	promoter
28	LOC_Os10g03050	leucine-rich repeat receptor protein kinase EXS precursor, putative	gene	leucine-rich repeat receptor protein kinase EXS precursor, putative	chr10	1264262	1265446	-	promoter
28	LOC_Os04g34720	PHD-finger domain containing protein, putative, expressed	gene	PHD-finger domain containing protein, putative, expressed	chr4	20829774	20838790	+	promoter
28	LOC_Os05g19360	hypothetical protein	gene	hypothetical protein	chr5	11245850	11246753	+	promoter
28	LOC_Os10g21760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11096049	11096363	-	promoter
28	LOC_Os09g22340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13495436	13496203	-	promoter,downstream
28	LOC_Os11g31150	hypothetical protein	gene	hypothetical protein	chr11	17666187	17667082	+	promoter
28	LOC_Os03g60050	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	34144243	34150911	+	promoter,downstream
28	LOC_Os10g01010	transposon protein, putative, Ac/Ds sub-class	gene	transposon protein, putative, Ac/Ds sub-class	chr10	21214	21576	-	promoter,downstream
28	LOC_Os02g21050	hypothetical protein	gene	hypothetical protein	chr2	12473377	12473610	+	promoter
28	LOC_Os11g03070	ATCHX, putative, expressed	gene	ATCHX, putative, expressed	chr11	1084611	1087360	+	promoter
28	LOC_Os07g23110	poly synthetase 1, putative, expressed	gene	poly synthetase 1, putative, expressed	chr7	13025447	13036168	+	promoter
28	LOC_Os05g06019	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3017834	3018379	-	promoter,downstream
28	LOC_Os10g16550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8176507	8181568	+	promoter
28	LOC_Os08g12820	proteasome/cyclosome repeat containing protein, expressed	gene	proteasome/cyclosome repeat containing protein, expressed	chr8	7590562	7596019	+	promoter
28	LOC_Os10g25200	expressed protein	gene	expressed protein	chr10	12934964	12942941	+	promoter
28	LOC_Os10g32970	eukaryotic translation initiation factor, putative, expressed	gene	eukaryotic translation initiation factor, putative, expressed	chr10	17186939	17190351	+	promoter
28	LOC_Os02g05140	hypothetical protein	gene	hypothetical protein	chr2	2459395	2460146	-	promoter,downstream
28	LOC_Os02g26890	PPR repeat containing protein	gene	PPR repeat containing protein	chr2	15782604	15784124	+	promoter
28	LOC_Os06g13290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	7310746	7312078	+	promoter
28	LOC_Os11g01650	hypothetical protein	gene	hypothetical protein	chr11	368398	368806	-	promoter
28	LOC_Os08g17730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10845207	10846242	+	promoter,downstream
28	LOC_Os08g37710	expressed protein	gene	expressed protein	chr8	23877882	23880324	-	promoter
28	LOC_Os05g02340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	752426	757003	-	promoter
28	LOC_Os07g02240	transcription factor X1, putative	gene	transcription factor X1, putative	chr7	717602	718827	-	promoter
28	LOC_Os06g29870	far1-like, putative	gene	far1-like, putative	chr6	17208897	17210710	+	promoter,downstream
28	LOC_Os02g05280	hypothetical protein	gene	hypothetical protein	chr2	2538168	2538668	+	promoter
28	LOC_Os01g29190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16355737	16357121	+	promoter,downstream
28	LOC_Os06g24280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14207863	14208417	-	promoter,downstream
28	LOC_Os09g14330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8463899	8465152	+	promoter,downstream
28	LOC_Os12g06500	hypothetical protein	gene	hypothetical protein	chr12	3137359	3137851	+	promoter
28	LOC_Os03g13440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7268708	7270678	-	promoter
28	LOC_Os02g40360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24434815	24441083	+	promoter,downstream
28	LOC_Os10g08420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4589327	4592604	-	promoter
28	LOC_Os04g51750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30481278	30485243	-	promoter
28	LOC_Os10g33480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	17561506	17565206	+	promoter
28	LOC_Os08g22950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13789678	13791583	-	promoter,downstream
28	LOC_Os12g05580	expressed protein	gene	expressed protein	chr12	2561784	2562388	+	promoter
28	LOC_Os03g51870	FHA domain containing protein, putative, expressed	gene	FHA domain containing protein, putative, expressed	chr3	29734686	29738331	+	promoter
28	LOC_Os08g26500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16132150	16137333	+	promoter,downstream
28	LOC_Os01g31900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	17473071	17476032	-	promoter
28	LOC_Os10g09990	cytokinin-O-glucosyltransferase 3, putative, expressed	gene	cytokinin-O-glucosyltransferase 3, putative, expressed	chr10	5429094	5430871	+	promoter
28	LOC_Os11g01710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	382820	384480	+	promoter
28	LOC_Os08g02610	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	1081011	1081562	+	promoter
28	LOC_Os01g24170	hypothetical protein	gene	hypothetical protein	chr1	13623346	13623741	+	promoter
28	LOC_Os10g24750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12660557	12662088	+	promoter,downstream
28	LOC_Os06g11890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	6321150	6324870	+	promoter
28	LOC_Os08g19800	hypothetical protein	gene	hypothetical protein	chr8	11853520	11855337	-	promoter
28	LOC_Os12g21700	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	gene	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	chr12	12192594	12200291	+	promoter
28	LOC_Os05g23070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13090999	13095547	-	promoter,downstream
28	LOC_Os12g15930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	9080854	9081348	+	promoter,downstream
28	LOC_Os08g20070	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	12032700	12034182	-	promoter,downstream
28	LOC_Os01g73332	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	42507444	42508070	-	promoter,downstream
28	LOC_Os05g28250	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	16482222	16485251	-	promoter,downstream
28	LOC_Os10g06290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3224530	3231250	+	promoter,downstream
28	LOC_Os07g15100	hypothetical protein	gene	hypothetical protein	chr7	8660264	8661061	+	promoter
28	LOC_Os03g33700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19271175	19273341	-	promoter
28	LOC_Os04g24989	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14387017	14388564	+	promoter
28	LOC_Os01g10880	expressed protein	gene	expressed protein	chr1	5807045	5807340	+	promoter
28	LOC_Os11g23246	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12943627	12944694	-	promoter,downstream
28	LOC_Os05g03350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1375830	1377068	+	promoter
28	LOC_Os03g36480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20203415	20205458	-	promoter,downstream
28	LOC_Os04g27220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	15913397	15916591	+	promoter
28	LOC_Os10g31610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16491469	16495172	+	promoter
28	LOC_Os12g15090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8606874	8608514	+	promoter,downstream
28	LOC_Os07g15910	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	9245593	9246833	-	promoter
28	LOC_Os11g35300	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	20229936	20235569	+	promoter
28	LOC_Os06g32830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19090822	19091343	-	promoter
28	LOC_Os08g15360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9357225	9358862	+	promoter,downstream
28	LOC_Os04g51210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	30158393	30159784	-	promoter
28	LOC_Os03g29260	elongation factor protein, putative, expressed	gene	elongation factor protein, putative, expressed	chr3	16652976	16657465	+	promoter
28	LOC_Os10g14830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7786208	7786795	+	promoter,downstream
28	LOC_Os06g11560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	6126033	6128402	-	promoter,downstream
28	LOC_Os04g18160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10026267	10030703	+	promoter,downstream
28	LOC_Os07g39610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	23736773	23739996	+	promoter
28	LOC_Os06g50742	expressed protein	gene	expressed protein	chr6	30696867	30699405	+	promoter
28	LOC_Os05g26320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15251813	15257002	-	promoter,downstream
28	LOC_Os06g25090	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	14675199	14675654	-	promoter,downstream
28	LOC_Os09g08830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4653951	4657143	+	promoter,downstream
28	LOC_Os01g41110	hypothetical protein	gene	hypothetical protein	chr1	23278988	23279826	+	promoter
28	LOC_Os07g25140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14360312	14361767	+	promoter,downstream
28	LOC_Os10g09340	hypothetical protein	gene	hypothetical protein	chr10	5061151	5061797	-	promoter,downstream
28	LOC_Os05g30930	hypothetical protein	gene	hypothetical protein	chr5	17900877	17901077	+	promoter
28	LOC_Os03g23190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13395113	13396384	-	promoter,downstream
28	LOC_Os05g17880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10279532	10281032	+	promoter,downstream
28	LOC_Os01g64850	OsSub10 - Putative Subtilisin homologue	gene	OsSub10 - Putative Subtilisin homologue	chr1	37645976	37648249	+	promoter
28	LOC_Os08g44580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28030422	28033620	-	promoter
28	LOC_Os05g06240	LRR receptor kinase, putative	gene	LRR receptor kinase, putative	chr5	3156521	3158208	-	promoter
28	LOC_Os06g13820	dynamin, putative, expressed	gene	dynamin, putative, expressed	chr6	7660692	7669036	+	promoter
28	LOC_Os09g11360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6304608	6310133	-	promoter,downstream
28	LOC_Os08g23240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14028111	14030658	+	promoter
28	LOC_Os08g35530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22389838	22391026	+	promoter,downstream
28	LOC_Os07g22390	ankyrin repeat domain containing protein, expressed	gene	ankyrin repeat domain containing protein, expressed	chr7	12564825	12569201	+	promoter
28	LOC_Os12g34610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20938569	20941510	+	promoter
28	LOC_Os05g14680	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	8345375	8347806	-	promoter,downstream
28	LOC_Os02g38470	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr2	23249217	23256428	-	promoter
28	LOC_Os07g19494	expressed protein	gene	expressed protein	chr7	11527007	11532716	+	promoter
28	LOC_Os07g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11673337	11674881	-	promoter
28	LOC_Os03g41710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	23171550	23174803	-	promoter
28	LOC_Os03g01040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	31629	34891	+	promoter
28	LOC_Os07g22220	F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed	gene	F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed	chr7	12423067	12439493	+	promoter,downstream
28	LOC_Os11g18500	hypothetical protein	gene	hypothetical protein	chr11	10422455	10425312	-	promoter
28	LOC_Os04g17290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9471324	9472305	-	promoter
28	LOC_Os03g27070	hypothetical protein	gene	hypothetical protein	chr3	15491994	15492610	+	promoter
28	LOC_Os07g26380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	15158650	15159504	-	promoter,downstream
28	LOC_Os05g17150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9821742	9825092	+	promoter,downstream
28	LOC_Os04g11004	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5971954	5974837	-	promoter
28	LOC_Os05g16620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9419655	9423703	-	promoter,downstream
28	LOC_Os07g27570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16103633	16106390	-	promoter
28	LOC_Os11g09210	hypothetical protein	gene	hypothetical protein	chr11	4934820	4935647	-	promoter
28	LOC_Os01g34260	hypothetical protein	gene	hypothetical protein	chr1	18887107	18887340	-	promoter
28	LOC_Os04g21700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12264215	12265822	-	promoter
28	LOC_Os07g20410	expressed protein	gene	expressed protein	chr7	11779176	11785274	+	promoter
28	LOC_Os05g17940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10313270	10315288	+	promoter,downstream
28	LOC_Os08g25120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	15247195	15250431	-	promoter
28	LOC_Os01g41170	THION27 - Plant thionin family protein precursor, expressed	gene	THION27 - Plant thionin family protein precursor, expressed	chr1	23310127	23311537	-	promoter
28	LOC_Os10g08500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4628841	4629527	+	promoter,downstream
28	LOC_Os05g22450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12688079	12689215	-	promoter
28	LOC_Os02g30410	expressed protein	gene	expressed protein	chr2	18104577	18108084	+	promoter
28	LOC_Os04g02090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	672634	675663	-	promoter,downstream
28	LOC_Os10g07576	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	4131410	4133344	+	promoter
28	LOC_Os01g41100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23274307	23277238	-	promoter
28	LOC_Os06g31700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18417102	18417761	-	promoter
28	LOC_Os01g03860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	1637107	1638036	+	promoter
28	LOC_Os04g01260	hypothetical protein	gene	hypothetical protein	chr4	202194	203550	+	promoter,downstream
28	LOC_Os07g46150	hypothetical protein	gene	hypothetical protein	chr7	27542373	27542888	-	promoter
28	LOC_Os03g27930	RNA cap guanine-N2 methyltransferase domain containing protein, expressed	gene	RNA cap guanine-N2 methyltransferase domain containing protein, expressed	chr3	16037640	16044185	+	promoter
28	LOC_Os02g23826	expressed protein	gene	expressed protein	chr2	13766169	13767536	-	promoter,downstream
28	LOC_Os03g07680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	3899458	3903111	+	promoter
28	LOC_Os12g36390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22244090	22247878	+	promoter
28	LOC_Os05g15490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8761591	8762247	-	promoter
28	LOC_Os05g31360	hypothetical protein	gene	hypothetical protein	chr5	18168229	18168654	+	promoter
28	LOC_Os07g40540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24289424	24289681	+	promoter
28	LOC_Os05g24920	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	14369421	14370398	+	promoter
28	LOC_Os05g43740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25362282	25365078	-	promoter
28	LOC_Os01g29760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16672771	16677386	-	promoter
28	LOC_Os04g28750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16853266	16855006	-	promoter,downstream
28	LOC_Os04g11700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6411628	6413431	+	promoter,downstream
28	LOC_Os01g24160	hypothetical protein	gene	hypothetical protein	chr1	13620311	13620677	-	promoter,downstream
28	LOC_Os04g22580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12773847	12777023	+	promoter,downstream
28	LOC_Os10g28724	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	14921732	14925253	-	promoter
28	LOC_Os05g28220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16471058	16471903	+	promoter,downstream
28	LOC_Os04g13340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7411070	7412140	-	promoter
28	LOC_Os09g04150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2155512	2157057	-	promoter,downstream
28	LOC_Os07g24740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14066660	14069208	+	promoter,downstream
28	LOC_Os10g07069	unknown	gene	unknown	chr10	3723209	3723990	-	promoter,downstream
28	LOC_Os01g04510	hypothetical protein	gene	hypothetical protein	chr1	2005152	2006254	-	promoter
28	LOC_Os04g11810	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr4	6467242	6468567	+	promoter
28	LOC_Os01g01150	RNA recognition motif, putative, expressed	gene	RNA recognition motif, putative, expressed	chr1	71775	78938	+	promoter
28	LOC_Os10g38770	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr10	20572883	20573363	-	promoter
28	LOC_Os07g28060	ethylene receptor, putative	gene	ethylene receptor, putative	chr7	16367469	16367847	+	promoter,downstream
28	LOC_Os01g27040	chromatin-remodeling complex ATPase chain, putative, expressed	gene	chromatin-remodeling complex ATPase chain, putative, expressed	chr1	15074836	15082279	-	promoter
28	LOC_Os10g30520	ras-related protein, putative, expressed	gene	ras-related protein, putative, expressed	chr10	15798062	15802345	+	promoter
28	LOC_Os03g49920	hypothetical protein	gene	hypothetical protein	chr3	28458112	28458417	+	promoter
28	LOC_Os06g37840	resistance protein, putative, expressed	gene	resistance protein, putative, expressed	chr6	22395865	22397671	-	promoter
28	LOC_Os03g24760	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr3	14105889	14108851	-	promoter
28	LOC_Os06g15110	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	8562856	8565170	-	promoter
28	LOC_Os05g10620	no apical meristem protein, putative, expressed	gene	no apical meristem protein, putative, expressed	chr5	5784079	5789498	-	promoter
28	LOC_Os06g29010	hypothetical protein	gene	hypothetical protein	chr6	16533749	16534161	-	promoter
28	LOC_Os11g21980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12156399	12163083	-	promoter,downstream
28	LOC_Os02g57240	oxidoreductase, aldo/keto reductase family protein, putative, expressed	gene	oxidoreductase, aldo/keto reductase family protein, putative, expressed	chr2	35062107	35066744	+	promoter
28	LOC_Os05g24260	hypothetical protein	gene	hypothetical protein	chr5	13973574	13973906	+	promoter,downstream
28	LOC_Os12g04900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2106317	2107273	+	promoter,downstream
28	LOC_Os07g19240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11397008	11397766	+	promoter,downstream
28	LOC_Os02g25430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14833960	14842701	+	promoter,downstream
28	LOC_Os12g18170	hypothetical protein	gene	hypothetical protein	chr12	10484283	10485245	+	promoter,downstream
28	LOC_Os09g25700	TsetseEP precursor, putative	gene	TsetseEP precursor, putative	chr9	15421387	15423389	+	promoter
28	LOC_Os07g14170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8088745	8089413	+	promoter
28	LOC_Os04g05490	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2772353	2773154	+	promoter
28	LOC_Os01g47100	3-5 exonuclease domain-containing protein, putative, expressed	gene	3-5 exonuclease domain-containing protein, putative, expressed	chr1	26911553	26912626	-	promoter
28	LOC_Os01g71590	expressed protein	gene	expressed protein	chr1	41469232	41477467	+	promoter
28	LOC_Os05g44250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	25679777	25682202	+	promoter
28	LOC_Os04g12340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6804817	6805281	-	promoter,downstream
28	LOC_Os05g13480	S-adenosylmethionine decarboxylase proenzyme, putative	gene	S-adenosylmethionine decarboxylase proenzyme, putative	chr5	7476410	7476982	+	promoter
28	LOC_Os11g17650	hypothetical protein	gene	hypothetical protein	chr11	9845130	9846686	-	promoter
28	LOC_Os03g35880	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	19900210	19900614	+	promoter
28	LOC_Os10g09590	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	5197515	5198000	-	promoter,downstream
28	LOC_Os03g34170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19456566	19458380	-	promoter,downstream
28	LOC_Os08g29440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	18046439	18047266	+	promoter,downstream
28	LOC_Os12g28910	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	17083524	17084039	+	promoter,downstream
28	LOC_Os12g34430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20824734	20825060	-	promoter
28	LOC_Os05g14640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8332438	8335074	-	promoter
28	LOC_Os05g12430	hypothetical protein	gene	hypothetical protein	chr5	7145489	7146569	+	promoter
28	LOC_Os08g16530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10118523	10122574	-	promoter,downstream
28	LOC_Os04g10850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5879089	5885198	-	promoter
28	LOC_Os10g17240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8600320	8600526	+	promoter,downstream
28	LOC_Os07g25980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14906017	14906636	+	promoter
28	LOC_Os08g24090	hypothetical protein	gene	hypothetical protein	chr8	14552041	14552304	-	promoter,downstream
28	LOC_Os08g17259	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10560376	10561199	-	promoter
28	LOC_Os02g01660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	370805	371257	+	promoter
28	LOC_Os10g31360	GRF zinc finger family protein, expressed	gene	GRF zinc finger family protein, expressed	chr10	16378374	16379084	-	promoter
28	LOC_Os04g07080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3742350	3743106	-	promoter,downstream
28	LOC_Os05g43040	tetratricopeptide repeat domain containing protein, expressed	gene	tetratricopeptide repeat domain containing protein, expressed	chr5	24934739	24937013	+	promoter
28	LOC_Os09g03540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1739746	1740045	+	promoter,downstream
28	LOC_Os01g31560	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	17259320	17259716	+	promoter
28	LOC_Os03g37760	hypothetical protein	gene	hypothetical protein	chr3	20935632	20936077	+	promoter
28	LOC_Os11g22430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12412223	12419249	-	promoter
28	LOC_Os03g26750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	15258466	15265029	+	promoter,downstream
28	LOC_Os03g30040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	17136621	17137452	-	promoter
28	LOC_Os09g14190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8393077	8393565	+	promoter,downstream
28	LOC_Os01g18400	CHIT10 - Chitinase family protein precursor, expressed	gene	CHIT10 - Chitinase family protein precursor, expressed	chr1	10341001	10342546	-	promoter
28	LOC_Os11g28820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16230638	16231072	-	promoter,downstream
28	LOC_Os06g43240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	25987882	25989057	+	promoter
28	LOC_Os04g46500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	27397191	27399445	+	promoter
28	LOC_Os05g17490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10045413	10045970	+	promoter
28	LOC_Os08g10380	hypothetical protein	gene	hypothetical protein	chr8	6084440	6085186	+	promoter
28	LOC_Os02g13500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	7215403	7219384	-	promoter
28	LOC_Os05g23924	glycosyl hydrolase family 10 protein, putative, expressed	gene	glycosyl hydrolase family 10 protein, putative, expressed	chr5	13698058	13705979	-	promoter
28	LOC_Os12g09180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4793546	4793836	-	promoter
28	LOC_Os12g33870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20388639	20390072	+	promoter,downstream
28	LOC_Os04g07520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3997651	3998838	-	promoter,downstream
28	LOC_Os11g19720	recA protein, putative, expressed	gene	recA protein, putative, expressed	chr11	11356060	11362908	-	promoter,downstream
28	LOC_Os06g14980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8493921	8494355	-	promoter,downstream
28	LOC_Os01g63970	sialyltransferase family domain containing protein, expressed	gene	sialyltransferase family domain containing protein, expressed	chr1	37132514	37134349	+	promoter
28	LOC_Os04g32010	thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed	gene	thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed	chr4	18997165	18999349	+	promoter
28	LOC_Os09g04940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2651140	2654280	+	promoter
28	LOC_Os01g47950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27441905	27442672	+	promoter
28	LOC_Os11g18280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10293254	10293806	+	promoter,downstream
28	LOC_Os05g23050	expressed protein	gene	expressed protein	chr5	13083290	13085663	+	promoter,downstream
28	LOC_Os02g56830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	34822623	34825453	+	promoter
28	LOC_Os07g12830	cytochrome b5-like Heme/Steroid binding domain containing protein, expressed	gene	cytochrome b5-like Heme/Steroid binding domain containing protein, expressed	chr7	7346759	7350687	+	promoter,downstream
28	LOC_Os09g23270	hypothetical protein	gene	hypothetical protein	chr9	13806733	13808173	-	promoter
28	LOC_Os04g29600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	17428544	17431273	-	promoter
28	LOC_Os09g24070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14312839	14313285	+	promoter,downstream
28	LOC_Os04g24590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14111502	14117597	-	promoter,downstream
28	LOC_Os04g08796	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4806063	4806434	+	promoter,downstream
28	LOC_Os08g20760	hypothetical protein	gene	hypothetical protein	chr8	12463383	12463685	+	promoter,downstream
28	LOC_Os04g14640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8201410	8202999	+	promoter
28	LOC_Os05g02950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1092412	1097346	+	promoter
28	LOC_Os03g12340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	6505818	6506075	+	promoter,downstream
28	LOC_Os10g08754	hypothetical protein	gene	hypothetical protein	chr10	4760887	4763977	+	promoter
28	LOC_Os09g17790	hypothetical protein	gene	hypothetical protein	chr9	10882558	10883604	+	promoter,downstream
28	LOC_Os12g07010	ribosomal protein L3, putative, expressed	gene	ribosomal protein L3, putative, expressed	chr12	3428223	3430787	+	promoter
28	LOC_Os12g04320	sulfotransferase domain containing protein, expressed	gene	sulfotransferase domain containing protein, expressed	chr12	1829780	1831036	-	promoter
28	LOC_Os06g48150	hypothetical protein	gene	hypothetical protein	chr6	29125049	29125381	-	promoter
28	LOC_Os04g45570	expressed protein	gene	expressed protein	chr4	26769305	26775145	-	promoter
28	LOC_Os01g28184	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15791268	15796060	+	promoter
28	LOC_Os03g43030	hypothetical protein	gene	hypothetical protein	chr3	24007400	24008294	-	promoter,downstream
28	LOC_Os05g13490	BURP domain containing protein	gene	BURP domain containing protein	chr5	7477964	7479293	-	promoter
28	LOC_Os08g07470	hypothetical protein	gene	hypothetical protein	chr8	4188507	4189243	-	promoter,downstream
28	LOC_Os06g23740	hypothetical protein	gene	hypothetical protein	chr6	13870664	13872424	+	promoter
28	LOC_Os08g24230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14625113	14628760	+	promoter,downstream
28	LOC_Os07g15210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8762828	8769185	-	promoter,downstream
28	LOC_Os04g29240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	17167390	17167683	+	promoter
28	LOC_Os02g37420	ras-related protein, putative, expressed	gene	ras-related protein, putative, expressed	chr2	22593518	22596358	+	promoter
28	LOC_Os01g24150	hypothetical protein	gene	hypothetical protein	chr1	13616482	13617118	+	promoter,downstream
28	LOC_Os12g16930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9701110	9701535	-	promoter,downstream
28	LOC_Os10g18704	hypothetical protein	gene	hypothetical protein	chr10	9435793	9436267	-	promoter
28	LOC_Os11g09960	expressed protein	gene	expressed protein	chr11	5332275	5336256	-	promoter
28	LOC_Os11g35700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20463189	20470978	-	promoter
28	LOC_Os04g24360	hypothetical protein	gene	hypothetical protein	chr4	13948498	13949123	+	promoter
28	LOC_Os10g13900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	7568611	7570395	-	promoter
28	LOC_Os07g14190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8093641	8094336	+	promoter,downstream
28	LOC_Os03g36730	OST3/OST6 family protein, putative, expressed	gene	OST3/OST6 family protein, putative, expressed	chr3	20362018	20368558	-	promoter
28	LOC_Os08g11680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6846074	6847060	-	promoter,downstream
28	LOC_Os08g28860	hydrolase, NUDIX family, domain containing protein, expressed	gene	hydrolase, NUDIX family, domain containing protein, expressed	chr8	17640790	17644064	+	promoter
28	LOC_Os03g23935	WD domain, G-beta repeat domain containing protein	gene	WD domain, G-beta repeat domain containing protein	chr3	13579861	13583177	+	promoter
28	LOC_Os07g15040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8622585	8624128	+	promoter
28	LOC_Os09g07440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3718390	3723265	-	promoter
28	LOC_Os09g19540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	11689688	11692924	-	promoter,downstream
28	LOC_Os09g04190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2204387	2206106	+	promoter,downstream
28	LOC_Os09g17420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10656279	10656869	-	promoter,downstream
28	LOC_Os03g43910	expressed protein	gene	expressed protein	chr3	24636250	24639549	-	promoter,downstream
28	LOC_Os08g04040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1958699	1960750	+	promoter,downstream
28	LOC_Os03g53570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30712014	30712790	+	promoter
28	LOC_Os03g31920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18254446	18255414	+	promoter,downstream
28	LOC_Os02g56400	OsWAK22 - OsWAK receptor-like protein kinase	gene	OsWAK22 - OsWAK receptor-like protein kinase	chr2	34525687	34528410	-	promoter
28	LOC_Os10g10650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5901288	5901722	+	promoter,downstream
28	LOC_Os12g25950	hypothetical protein	gene	hypothetical protein	chr12	15064683	15064970	-	promoter,downstream
28	LOC_Os05g18330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10557182	10558450	+	promoter
28	LOC_Os01g50000	expressed protein	gene	expressed protein	chr1	28725544	28726182	-	promoter
28	LOC_Os05g03810	trehalose phosphatase, putative	gene	trehalose phosphatase, putative	chr5	1695231	1697240	-	promoter
28	LOC_Os01g40770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23032004	23034034	+	promoter,downstream
28	LOC_Os01g08340	zinc finger family protein, putative, expressed	gene	zinc finger family protein, putative, expressed	chr1	4090068	4093859	+	promoter
28	LOC_Os06g33350	plant protein of unknown function domain containing protein, expressed	gene	plant protein of unknown function domain containing protein, expressed	chr6	19426546	19430026	-	promoter
28	LOC_Os08g41760	OsFBX304 - F-box domain containing protein, expressed	gene	OsFBX304 - F-box domain containing protein, expressed	chr8	26353214	26354609	-	promoter
28	LOC_Os09g14480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8557251	8562773	+	promoter
28	LOC_Os02g28160	hypothetical protein	gene	hypothetical protein	chr2	16667596	16668271	+	promoter,downstream
28	LOC_Os11g35660	leucine-rich repeat receptor protein kinase EXS precursor, putative	gene	leucine-rich repeat receptor protein kinase EXS precursor, putative	chr11	20436139	20439420	+	promoter
28	LOC_Os07g45810	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	27341365	27343123	+	promoter
28	LOC_Os01g30932	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16866854	16869246	-	promoter
28	LOC_Os02g25340	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14768621	14770567	+	promoter,downstream
28	LOC_Os06g17030	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	9875078	9878342	+	promoter
28	LOC_Os08g42870	expressed protein	gene	expressed protein	chr8	27100600	27106761	-	promoter
28	LOC_Os05g38910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22756194	22756721	-	promoter,downstream
28	LOC_Os02g14420	hypothetical protein	gene	hypothetical protein	chr2	7922249	7922954	+	promoter
28	LOC_Os06g01160	hypothetical protein	gene	hypothetical protein	chr6	129355	129738	-	promoter
28	LOC_Os12g15314	staphylococcal nuclease homologue, putative, expressed	gene	staphylococcal nuclease homologue, putative, expressed	chr12	8723420	8735356	-	promoter
28	LOC_Os10g17320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8642165	8645831	+	promoter,downstream
28	LOC_Os04g23710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13552234	13552545	-	promoter
28	LOC_Os04g14880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8362844	8363395	+	promoter,downstream
28	LOC_Os04g40890	hypothetical protein	gene	hypothetical protein	chr4	24087399	24087773	+	promoter
28	LOC_Os09g08300	expressed protein	gene	expressed protein	chr9	4289113	4290626	+	promoter
28	LOC_Os04g48550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28755283	28756922	-	promoter,downstream
28	LOC_Os05g51790	RecF/RecN/SMC N terminal domain containing protein, expressed	gene	RecF/RecN/SMC N terminal domain containing protein, expressed	chr5	29665510	29678175	-	promoter
28	LOC_Os04g04310	hypothetical protein	gene	hypothetical protein	chr4	2013803	2014401	-	promoter
28	LOC_Os04g02264	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	784752	789230	-	promoter,downstream
28	LOC_Os09g17049	expressed protein	gene	expressed protein	chr9	10447413	10451767	+	promoter
28	LOC_Os12g19900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11587270	11593934	-	promoter,downstream
28	LOC_Os04g09720	OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP22 - Putative Serine Carboxypeptidase homologue, expressed	chr4	5203383	5212023	-	promoter
28	LOC_Os01g23050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12970674	12971498	-	promoter,downstream
28	LOC_Os10g07558	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4084892	4087969	+	promoter,downstream
28	LOC_Os01g47850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	27392794	27395234	+	promoter
28	LOC_Os02g23850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13800013	13801166	+	promoter,downstream
28	LOC_Os01g36860	DEAD-box ATP-dependent RNA helicase 40, putative, expressed	gene	DEAD-box ATP-dependent RNA helicase 40, putative, expressed	chr1	20521402	20527198	+	promoter
28	LOC_Os05g16889	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9621790	9622215	-	promoter,downstream
28	LOC_Os09g04610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2454233	2456153	+	promoter
28	LOC_Os08g41080	expressed protein	gene	expressed protein	chr8	25966688	25968807	+	promoter
28	LOC_Os10g24610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12557020	12557310	+	promoter,downstream
28	LOC_Os10g12020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6692042	6695350	+	promoter
28	LOC_Os10g24680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12609356	12609949	-	promoter,downstream
28	LOC_Os10g36140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	19245889	19249186	+	promoter,downstream
28	LOC_Os05g20650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12112944	12113581	-	promoter,downstream
28	LOC_Os06g48400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29271067	29273296	-	promoter,downstream
28	LOC_Os10g11520	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	6400877	6401389	-	promoter,downstream
28	LOC_Os11g29600	RING zinc finger ankyrin protein, putative	gene	RING zinc finger ankyrin protein, putative	chr11	16702875	16703209	-	promoter,downstream
28	LOC_Os02g13000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6891525	6893620	+	promoter
28	LOC_Os04g15944	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8652559	8658758	-	promoter,downstream
28	LOC_Os10g40770	hypothetical protein	gene	hypothetical protein	chr10	21807594	21808211	+	promoter
28	LOC_Os12g31190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18748084	18754194	-	promoter
28	LOC_Os06g31680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18409317	18410567	-	promoter,downstream
28	LOC_Os04g48600	hypothetical protein	gene	hypothetical protein	chr4	28779670	28780972	+	promoter,downstream
28	LOC_Os04g06200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3216848	3218185	-	promoter
28	LOC_Os01g33560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18470891	18471676	+	promoter,downstream
28	LOC_Os09g22040	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	13351011	13353250	+	promoter,downstream
28	LOC_Os08g33330	protein kinase PKN/PRK1, effector, putative, expressed	gene	protein kinase PKN/PRK1, effector, putative, expressed	chr8	20787714	20792103	+	promoter
28	LOC_Os11g21930	hypothetical protein	gene	hypothetical protein	chr11	12118730	12119150	-	promoter
28	LOC_Os11g19690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11329448	11332678	-	promoter
28	LOC_Os08g08790	ubiquitin family protein, putative	gene	ubiquitin family protein, putative	chr8	5093407	5094484	-	promoter
28	LOC_Os08g35665	LTPL48 - Protease inhibitor/seed storage/LTP family protein precursor	gene	LTPL48 - Protease inhibitor/seed storage/LTP family protein precursor	chr8	22488415	22489056	+	promoter
28	LOC_Os04g07650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4059470	4066210	+	promoter,downstream
28	LOC_Os04g28930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16979501	16981710	+	promoter
28	LOC_Os02g28960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17131543	17133346	-	promoter,downstream
28	LOC_Os10g13340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7212949	7216626	-	promoter,downstream
28	LOC_Os04g05210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2596049	2598937	+	promoter
28	LOC_Os05g09140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5102129	5107121	+	promoter
28	LOC_Os08g12449	expressed protein	gene	expressed protein	chr8	7362022	7367023	-	promoter,downstream
28	LOC_Os01g66070	PHD-finger domain containing protein, putative	gene	PHD-finger domain containing protein, putative	chr1	38343367	38343894	+	promoter,downstream
28	LOC_Os07g15730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9136643	9137002	-	promoter,downstream
28	LOC_Os06g15130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8580248	8580841	+	promoter,downstream
28	LOC_Os01g06710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	3167000	3170413	-	promoter
28	LOC_Os12g09000	phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed	gene	phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed	chr12	4705832	4710321	+	promoter
28	LOC_Os05g14170	expressed protein	gene	expressed protein	chr5	7926975	7936354	+	promoter
28	LOC_Os11g42130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	24905779	24909015	+	promoter,downstream
28	LOC_Os12g15630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8921247	8925858	-	promoter,downstream
28	LOC_Os02g24190	cyclin-T1-2, putative, expressed	gene	cyclin-T1-2, putative, expressed	chr2	14001044	14012253	+	promoter
28	LOC_Os06g24190	expressed protein	gene	expressed protein	chr6	14169131	14169919	-	promoter
28	LOC_Os02g07560	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	3912861	3916103	+	promoter,downstream
28	LOC_Os09g07350	fasciclin-like arabinogalactan protein 8 precursor, putative, expressed	gene	fasciclin-like arabinogalactan protein 8 precursor, putative, expressed	chr9	3653972	3657804	+	promoter
28	LOC_Os03g63010	plastid terminal oxidase, putative, expressed	gene	plastid terminal oxidase, putative, expressed	chr3	35618470	35622488	+	promoter
28	LOC_Os04g21060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11830231	11832873	-	promoter
28	LOC_Os11g36210	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	20842311	20843027	+	promoter
28	LOC_Os12g14030	hypothetical protein	gene	hypothetical protein	chr12	7966295	7966555	-	promoter,downstream
28	LOC_Os10g06360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3276424	3276852	+	promoter,downstream
28	LOC_Os03g33450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19111088	19112054	+	promoter
28	LOC_Os10g03010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1249679	1251108	-	promoter,downstream
28	LOC_Os06g24970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14624801	14625994	-	promoter,downstream
28	LOC_Os10g24140	hypothetical protein	gene	hypothetical protein	chr10	12293436	12293825	-	promoter,downstream
28	LOC_Os12g28659	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16935219	16935797	+	promoter
28	LOC_Os04g14830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8322715	8328486	-	promoter
28	LOC_Os08g45249	unknown	gene	unknown	chr8	28411212	28412400	-	promoter,downstream
28	LOC_Os02g11910	hypothetical protein	gene	hypothetical protein	chr2	6167015	6167929	+	promoter
28	LOC_Os07g22830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12875948	12876631	-	promoter,downstream
28	LOC_Os02g19730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11546781	11548442	-	promoter
28	LOC_Os02g22380	glycosyltransferase protein, putative, expressed	gene	glycosyltransferase protein, putative, expressed	chr2	13367798	13371156	+	promoter
28	LOC_Os03g02640	methylthioribose kinase, putative, expressed	gene	methylthioribose kinase, putative, expressed	chr3	973602	977413	+	promoter
28	LOC_Os12g19780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11525717	11526907	+	promoter
28	LOC_Os06g36120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21142754	21143752	+	promoter,downstream
28	LOC_Os11g26240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14562399	14564544	+	promoter,downstream
28	LOC_Os02g41450	no apical meristem protein, putative	gene	no apical meristem protein, putative	chr2	24810863	24813949	+	promoter
28	LOC_Os07g24730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14064054	14064710	-	promoter,downstream
28	LOC_Os01g41460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	23471175	23473426	+	promoter,downstream
28	LOC_Os12g12350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6792728	6793183	+	promoter
28	LOC_Os01g64550	hypothetical protein	gene	hypothetical protein	chr1	37454362	37455583	+	promoter
28	LOC_Os03g10290	hypothetical protein	gene	hypothetical protein	chr3	5245203	5247942	-	promoter
28	LOC_Os11g17290	expressed protein	gene	expressed protein	chr11	9621781	9628343	+	promoter
28	LOC_Os02g15050	hypothetical protein	gene	hypothetical protein	chr2	8394293	8395144	+	promoter
28	LOC_Os08g44180	expressed protein	gene	expressed protein	chr8	27808303	27811643	+	promoter
28	LOC_Os07g37680	expressed protein	gene	expressed protein	chr7	22589913	22593648	+	promoter
28	LOC_Os07g41120	RNA recognition motif containing protein, putative	gene	RNA recognition motif containing protein, putative	chr7	24609207	24612695	-	promoter
28	LOC_Os01g37670	OsFBX15 - F-box domain containing protein, expressed	gene	OsFBX15 - F-box domain containing protein, expressed	chr1	21067462	21069172	+	promoter
28	LOC_Os11g27300	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	15237591	15237971	+	promoter
28	LOC_Os03g20630	histidine triad family protein, putative, expressed	gene	histidine triad family protein, putative, expressed	chr3	11671498	11676235	+	promoter
28	LOC_Os07g47320	hypothetical protein	gene	hypothetical protein	chr7	28288785	28296351	+	promoter
28	LOC_Os05g03730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1637455	1637955	-	promoter
28	LOC_Os04g07010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3732503	3734686	+	promoter
28	LOC_Os04g16430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8925635	8932305	-	promoter,downstream
28	LOC_Os09g13760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8062929	8063341	-	promoter
28	LOC_Os04g04600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2194705	2197589	-	promoter
28	LOC_Os10g32240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16855676	16857775	+	promoter
28	LOC_Os01g31090	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	16997767	16998579	-	promoter,downstream
28	LOC_Os12g22620	endonuclease/Exonuclease/phosphatase family protein, expressed	gene	endonuclease/Exonuclease/phosphatase family protein, expressed	chr12	12777781	12781676	+	promoter
28	LOC_Os02g21630	SEC14 cytosolic factor family protein, putative, expressed	gene	SEC14 cytosolic factor family protein, putative, expressed	chr2	12846467	12851439	+	promoter
28	LOC_Os10g20050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9992996	9995219	+	promoter,downstream
28	LOC_Os09g05040	hypothetical protein	gene	hypothetical protein	chr9	2710085	2711514	-	promoter
28	LOC_Os10g10664	hypothetical protein	gene	hypothetical protein	chr10	5908056	5908544	+	promoter,downstream
28	LOC_Os09g21830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13228306	13228713	-	promoter
28	LOC_Os07g22510	expressed protein	gene	expressed protein	chr7	12664281	12665375	+	promoter
28	LOC_Os02g16480	nucleolar transcription factor 1, putative	gene	nucleolar transcription factor 1, putative	chr2	9407259	9407836	+	promoter
28	LOC_Os08g27990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17053649	17055075	+	promoter
28	LOC_Os04g41680	CHIT3 - Chitinase family protein precursor, expressed	gene	CHIT3 - Chitinase family protein precursor, expressed	chr4	24523578	24524772	-	promoter
28	LOC_Os05g17830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10251885	10258075	-	promoter
28	LOC_Os07g41510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	24874333	24880700	+	promoter
28	LOC_Os05g22690	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12823635	12824138	-	promoter,downstream
28	LOC_Os06g12750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	6957249	6957590	-	promoter
28	LOC_Os08g05260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	2744706	2746691	-	promoter
28	LOC_Os03g24080	hypothetical protein	gene	hypothetical protein	chr3	13673498	13673965	-	promoter,downstream
28	LOC_Os01g39570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	22315212	22320666	-	promoter,downstream
28	LOC_Os07g35130	OsFBX240 - F-box domain containing protein, expressed	gene	OsFBX240 - F-box domain containing protein, expressed	chr7	21040413	21042400	+	promoter
28	LOC_Os12g03770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	1532970	1537917	+	promoter
28	LOC_Os07g06020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	2909859	2916608	-	promoter
28	LOC_Os11g22200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12278127	12278675	+	promoter,downstream
28	LOC_Os07g26250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15095610	15096137	-	promoter,downstream
28	LOC_Os03g27860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	16000705	16004264	-	promoter,downstream
28	LOC_Os02g29530	glycosyl transferase 8 domain containing protein, putative, expressed	gene	glycosyl transferase 8 domain containing protein, putative, expressed	chr2	17553347	17556934	-	promoter
28	LOC_Os04g16170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8777939	8782059	+	promoter
28	LOC_Os05g15620	expressed protein	gene	expressed protein	chr5	8845009	8845263	+	promoter
28	LOC_Os04g23480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13412872	13414580	+	promoter
28	LOC_Os01g45010	hypothetical protein	gene	hypothetical protein	chr1	25533588	25538931	+	promoter,downstream
28	LOC_Os11g17850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9988092	9991783	+	promoter
28	LOC_Os04g13100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7223269	7226256	+	promoter
28	LOC_Os07g16730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9817972	9818596	-	promoter,downstream
28	LOC_Os07g27290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15859253	15861978	+	promoter
28	LOC_Os03g12350	two-component response regulator, putative, expressed	gene	two-component response regulator, putative, expressed	chr3	6511744	6517792	+	promoter
28	LOC_Os02g16410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9353326	9355223	+	promoter,downstream
28	LOC_Os08g20030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11995693	12002080	+	promoter,downstream
28	LOC_Os07g18860	hypothetical protein	gene	hypothetical protein	chr7	11167827	11168354	+	promoter
28	LOC_Os05g18750	ribosomal protein L25, putative, expressed	gene	ribosomal protein L25, putative, expressed	chr5	10865295	10869162	+	promoter
28	LOC_Os12g29440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	17483182	17484777	-	promoter,downstream
28	LOC_Os11g27660	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	15462736	15463432	-	promoter,downstream
28	LOC_Os09g19460	hypothetical protein	gene	hypothetical protein	chr9	11647556	11647918	-	promoter
28	LOC_Os09g04384	expressed protein	gene	expressed protein	chr9	2319603	2321832	+	promoter,downstream
28	LOC_Os04g17250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9450463	9453207	-	promoter,downstream
28	LOC_Os03g53260	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	30551077	30551487	-	promoter
28	LOC_Os06g43160	exostosin family domain containing protein	gene	exostosin family domain containing protein	chr6	25940643	25942656	+	promoter
28	LOC_Os09g26730	chaperonin, putative, expressed	gene	chaperonin, putative, expressed	chr9	16235437	16239792	-	promoter
28	LOC_Os06g25370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14857883	14859919	+	promoter,downstream
28	LOC_Os10g31590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	16480238	16486348	+	promoter,downstream
28	LOC_Os02g24820	hypothetical protein	gene	hypothetical protein	chr2	14391636	14391842	+	promoter
28	LOC_Os06g24480	hypothetical protein	gene	hypothetical protein	chr6	14341649	14342274	-	promoter
28	LOC_Os05g18700	hypothetical protein	gene	hypothetical protein	chr5	10828820	10829044	-	promoter,downstream
28	LOC_Os08g10800	hypothetical protein	gene	hypothetical protein	chr8	6357780	6358325	-	promoter,downstream
28	LOC_Os08g26490	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	16127585	16128322	-	promoter
28	LOC_Os01g02650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	891095	897250	+	promoter
28	LOC_Os12g39910	hypothetical protein	gene	hypothetical protein	chr12	24623929	24624704	+	promoter
28	LOC_Os06g46170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27980348	27983830	+	promoter
28	LOC_Os06g27770	isoflavone reductase homolog IRL, putative, expressed	gene	isoflavone reductase homolog IRL, putative, expressed	chr6	15723699	15726774	+	promoter,downstream
28	LOC_Os11g23234	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	12928357	12931236	-	promoter,downstream
28	LOC_Os03g11100	vesicle transport protein GOT1B, putative, expressed	gene	vesicle transport protein GOT1B, putative, expressed	chr3	5706359	5709082	+	promoter
28	LOC_Os08g29710	galactosyltransferase family protein, putative, expressed	gene	galactosyltransferase family protein, putative, expressed	chr8	18240869	18246813	+	promoter
28	LOC_Os11g22750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12619249	12622179	-	promoter,downstream
28	LOC_Os02g58710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	35861208	35866474	-	promoter
28	LOC_Os04g48320	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	28623754	28624671	-	promoter,downstream
28	LOC_Os12g15750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8988658	8993166	-	promoter
28	LOC_Os07g41050	NAD dependent epimerase/dehydratase family protein, putative, expressed	gene	NAD dependent epimerase/dehydratase family protein, putative, expressed	chr7	24554112	24555731	+	promoter
28	LOC_Os12g14780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8452085	8455138	+	promoter,downstream
28	LOC_Os03g62910	expressed protein	gene	expressed protein	chr3	35582619	35590614	+	promoter
28	LOC_Os10g22650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	11700608	11703786	-	promoter,downstream
28	LOC_Os02g25920	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	15203633	15207364	+	promoter
28	LOC_Os07g37880	hypothetical protein	gene	hypothetical protein	chr7	22717135	22717356	-	promoter
28	LOC_Os04g08836	cytochrome P450 79A1, putative	gene	cytochrome P450 79A1, putative	chr4	4892612	4893230	+	promoter
28	LOC_Os12g30870	unknown	gene	unknown	chr12	18516518	18516786	+	promoter
28	LOC_Os01g54610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	31418893	31420484	+	promoter
28	LOC_Os01g35890	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	19868102	19869269	+	promoter
28	LOC_Os08g36080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22732079	22735408	-	promoter
28	LOC_Os04g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10149754	10155200	+	promoter
28	LOC_Os04g45300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	26589790	26590239	-	promoter
28	LOC_Os09g10510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5731932	5733125	-	promoter,downstream
28	LOC_Os10g39700	CHIT15 - Chitinase family protein precursor, putative, expressed	gene	CHIT15 - Chitinase family protein precursor, putative, expressed	chr10	21147963	21150725	+	promoter
28	LOC_Os03g19059	anaphase-promoting complex subunit 11, putative, expressed	gene	anaphase-promoting complex subunit 11, putative, expressed	chr3	10671499	10672974	+	promoter
28	LOC_Os04g32770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	19594061	19599913	+	promoter
28	LOC_Os02g16350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9303208	9305565	+	promoter,downstream
28	LOC_Os09g02140	expressed protein	gene	expressed protein	chr9	816568	821770	+	promoter
28	LOC_Os04g20030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11148238	11151193	+	promoter,downstream
28	LOC_Os09g06760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3224723	3225754	+	promoter
28	LOC_Os08g44430	vesicle-associated membrane protein 727, putative, expressed	gene	vesicle-associated membrane protein 727, putative, expressed	chr8	27953586	27956266	-	promoter
28	LOC_Os11g33458	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19339265	19341004	-	promoter,downstream
28	LOC_Os06g29330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16756583	16757485	-	promoter
28	LOC_Os03g02150	adapitin protein, putative, expressed	gene	adapitin protein, putative, expressed	chr3	697191	707686	+	promoter
28	LOC_Os04g59394	expressed protein	gene	expressed protein	chr4	35125144	35130958	+	promoter
28	LOC_Os08g29890	hypothetical protein	gene	hypothetical protein	chr8	18367572	18368445	+	promoter
28	LOC_Os01g74240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	43005527	43008831	-	promoter
28	LOC_Os08g37130	oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed	gene	oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed	chr8	23461220	23465679	+	promoter
28	LOC_Os05g27780	expressed protein	gene	expressed protein	chr5	16121026	16122193	-	promoter
28	LOC_Os11g12250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6838631	6840404	-	promoter
28	LOC_Os10g08040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4373200	4375707	-	promoter
28	LOC_Os12g22430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12662875	12663807	+	promoter,downstream
28	LOC_Os03g16100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8881797	8882054	+	promoter
28	LOC_Os01g29130	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16311757	16312402	-	promoter,downstream
28	LOC_Os01g37400	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	20877536	20879517	-	promoter,downstream
28	LOC_Os06g33480	CAPIP1, putative	gene	CAPIP1, putative	chr6	19502410	19505419	-	promoter
28	LOC_Os03g42900	KH domain containing protein, putative, expressed	gene	KH domain containing protein, putative, expressed	chr3	23923751	23932379	+	promoter
28	LOC_Os12g15720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8974999	8976532	+	promoter,downstream
28	LOC_Os12g24300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13857953	13860736	+	promoter
28	LOC_Os02g12990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6886165	6887598	+	promoter,downstream
28	LOC_Os05g17390	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9974499	9975056	-	promoter,downstream
28	LOC_Os03g45670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	25768323	25772845	-	promoter,downstream
28	LOC_Os10g21620	hypothetical protein	gene	hypothetical protein	chr10	11003194	11003777	-	promoter
28	LOC_Os01g15360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8603151	8606068	-	promoter
28	LOC_Os03g35690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19765515	19768481	+	promoter,downstream
28	LOC_Os01g31740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17369505	17370217	+	promoter,downstream
28	LOC_Os12g31820	phosphoserine phosphatase, chloroplast precursor, putative, expressed	gene	phosphoserine phosphatase, chloroplast precursor, putative, expressed	chr12	19118818	19122389	-	promoter
28	LOC_Os01g10920	peptide-N4-asparagine amidase A, putative	gene	peptide-N4-asparagine amidase A, putative	chr1	5822869	5827251	-	promoter
28	LOC_Os09g24780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14760536	14761177	+	promoter
28	LOC_Os08g16730	hypothetical protein	gene	hypothetical protein	chr8	10226527	10226823	-	promoter
28	LOC_Os08g30010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18430027	18435731	+	promoter
28	LOC_Os01g16280	hypothetical protein	gene	hypothetical protein	chr1	9220082	9220504	-	promoter
28	LOC_Os10g10980	OsFBX379 - F-box domain containing protein, expressed	gene	OsFBX379 - F-box domain containing protein, expressed	chr10	6085379	6086480	+	promoter
28	LOC_Os05g06830	hypothetical protein	gene	hypothetical protein	chr5	3577824	3579406	-	promoter
28	LOC_Os04g21400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12082071	12084837	-	promoter,downstream
28	LOC_Os08g24070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14544830	14545264	-	promoter,downstream
28	LOC_Os05g15420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8720870	8721835	+	promoter,downstream
28	LOC_Os01g19590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11098995	11101596	-	promoter,downstream
28	LOC_Os04g56390	expressed protein	gene	expressed protein	chr4	33438011	33438814	+	promoter
28	LOC_Os02g40210	hypothetical protein	gene	hypothetical protein	chr2	24326540	24327160	+	promoter
28	LOC_Os12g27170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15942478	15944300	+	promoter,downstream
28	LOC_Os07g23580	hypothetical protein	gene	hypothetical protein	chr7	13329037	13329947	+	promoter,downstream
28	LOC_Os05g24960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14383062	14385556	-	promoter,downstream
28	LOC_Os09g17120	ankyrin repeat domain containing protein	gene	ankyrin repeat domain containing protein	chr9	10486855	10488821	-	promoter
28	LOC_Os02g17110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9796796	9800496	+	promoter
28	LOC_Os01g36410	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	20211850	20213028	+	promoter,downstream
28	LOC_Os12g13980	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	7938804	7939262	-	promoter,downstream
28	LOC_Os04g45410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	26674722	26675620	-	promoter
28	LOC_Os04g44010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25899531	25901685	+	promoter
28	LOC_Os08g22170	hypothetical protein	gene	hypothetical protein	chr8	13369573	13369800	+	promoter
28	LOC_Os11g37050	expressed protein	gene	expressed protein	chr11	21405934	21410956	+	promoter,downstream
28	LOC_Os04g56600	hypothetical protein	gene	hypothetical protein	chr4	33568889	33570186	+	promoter
28	LOC_Os01g28340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15874786	15876888	+	promoter,downstream
28	LOC_Os09g10360	hypothetical protein	gene	hypothetical protein	chr9	5656883	5660134	-	promoter,downstream
28	LOC_Os12g19820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11557663	11558313	-	promoter,downstream
28	LOC_Os08g24700	hypothetical protein	gene	hypothetical protein	chr8	14924579	14925037	+	promoter
28	LOC_Os12g30650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18386609	18387421	+	promoter,downstream
28	LOC_Os01g35300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	19538325	19539244	-	promoter
28	LOC_Os05g22370	N-acetylglucosaminyl transferase component, putative, expressed	gene	N-acetylglucosaminyl transferase component, putative, expressed	chr5	12618080	12629068	-	promoter
28	LOC_Os12g30250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18123599	18124126	-	promoter,downstream
28	LOC_Os05g22830	DNA-directed RNA polymerase subunit beta, putative	gene	DNA-directed RNA polymerase subunit beta, putative	chr5	12896568	12900876	+	promoter
28	LOC_Os06g22650	VHS and GAT domain containing protein, expressed	gene	VHS and GAT domain containing protein, expressed	chr6	13161902	13170018	+	promoter
28	LOC_Os11g04090	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	1654934	1655377	+	promoter
28	LOC_Os05g07610	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	4083746	4084294	+	promoter
28	LOC_Os01g41850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23701036	23703000	-	promoter
28	LOC_Os04g07130	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3778886	3779943	+	promoter
28	LOC_Os12g17270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9880827	9883129	+	promoter,downstream
28	LOC_Os05g18380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10597110	10603780	+	promoter,downstream
28	LOC_Os04g11420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6234025	6236933	-	promoter
28	LOC_Os05g28940	GTP-binding protein, putative, expressed	gene	GTP-binding protein, putative, expressed	chr5	16905706	16911830	+	promoter
28	LOC_Os12g17430	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr12	9992415	9993859	-	promoter
28	LOC_Os10g06070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3079069	3080979	-	promoter,downstream
28	LOC_Os05g22314	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12568337	12573895	-	promoter
28	LOC_Os11g19560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	11265640	11267862	-	promoter,downstream
28	LOC_Os07g08980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	4673411	4673886	-	promoter,downstream
28	LOC_Os08g17960	hypothetical protein	gene	hypothetical protein	chr8	11015113	11018340	-	promoter
28	LOC_Os11g30140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17054422	17055252	-	promoter,downstream
28	LOC_Os03g33490	hypothetical protein	gene	hypothetical protein	chr3	19127703	19128537	-	promoter,downstream
28	LOC_Os03g36150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20052058	20056419	-	promoter
28	LOC_Os02g12189	unknown	gene	unknown	chr2	6336412	6336837	-	promoter,downstream
28	LOC_Os09g13370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7712929	7715136	+	promoter
28	LOC_Os12g04820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2059349	2061642	+	promoter,downstream
28	LOC_Os04g24040	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr4	13722325	13727370	+	promoter
28	LOC_Os08g29450	hypothetical protein	gene	hypothetical protein	chr8	18051820	18052263	-	promoter,downstream
28	LOC_Os07g22290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12496638	12497968	+	promoter,downstream
28	LOC_Os05g39280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	22972168	22975305	-	promoter,downstream
28	LOC_Os04g22290	hypothetical protein	gene	hypothetical protein	chr4	12610695	12612117	+	promoter
28	LOC_Os11g12540	hypothetical protein	gene	hypothetical protein	chr11	7018524	7019073	-	promoter
28	LOC_Os07g23670	hypothetical protein	gene	hypothetical protein	chr7	13368823	13369171	-	promoter,downstream
28	LOC_Os06g15010	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	8505271	8507465	-	promoter
28	LOC_Os04g25310	hypothetical protein	gene	hypothetical protein	chr4	14620274	14620913	-	promoter
28	LOC_Os06g13610	expressed protein	gene	expressed protein	chr6	7539775	7540865	+	promoter
28	LOC_Os01g05550	hypothetical protein	gene	hypothetical protein	chr1	2650134	2650589	-	promoter
28	LOC_Os09g08050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4152332	4153255	-	promoter
28	LOC_Os01g41522	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23505605	23506716	-	promoter
28	LOC_Os07g11820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6539990	6540946	+	promoter,downstream
28	LOC_Os11g31320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17800680	17801504	+	promoter
28	LOC_Os12g22010	hypothetical protein	gene	hypothetical protein	chr12	12373402	12379066	-	promoter
28	LOC_Os05g08680	microneme protein Sm70, putative	gene	microneme protein Sm70, putative	chr5	4753623	4754735	-	promoter,downstream
28	LOC_Os11g02500	hypothetical protein	gene	hypothetical protein	chr11	776056	776570	+	promoter
28	LOC_Os12g01680	macrophage migration inhibitory factor, putative	gene	macrophage migration inhibitory factor, putative	chr12	410252	412211	+	promoter
28	LOC_Os04g12010	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr4	6588633	6591276	-	promoter
28	LOC_Os02g25820	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr2	15124488	15125594	+	promoter
28	LOC_Os05g32050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	18609838	18615676	-	promoter,downstream
28	LOC_Os05g05400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	2683744	2684513	+	promoter,downstream
28	LOC_Os02g14730	ubiquitin carboxyl-terminal hydrolase family protein, expressed	gene	ubiquitin carboxyl-terminal hydrolase family protein, expressed	chr2	8135360	8143468	+	promoter
28	LOC_Os11g22230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12293483	12294621	+	promoter,downstream
28	LOC_Os06g25420	hypothetical protein	gene	hypothetical protein	chr6	14878479	14878996	+	promoter
28	LOC_Os01g21380	FAD dependent oxidoreductase domain containing protein, expressed	gene	FAD dependent oxidoreductase domain containing protein, expressed	chr1	11943367	11944611	-	promoter
28	LOC_Os07g45650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27254405	27260494	+	promoter,downstream
28	LOC_Os08g11900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6973989	6975441	-	promoter,downstream
28	LOC_Os09g08650	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr9	4525474	4531793	+	promoter
28	LOC_Os01g35650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19745134	19746965	+	promoter,downstream
28	LOC_Os07g17430	hypothetical protein	gene	hypothetical protein	chr7	10289274	10290156	+	promoter,downstream
28	LOC_Os09g21980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13301920	13307259	-	promoter
28	LOC_Os07g11440	chalcone synthase, putative	gene	chalcone synthase, putative	chr7	6293616	6295308	-	promoter
28	LOC_Os07g37520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22464656	22466141	-	promoter
28	LOC_Os07g24140	hypothetical protein	gene	hypothetical protein	chr7	13696728	13698268	-	promoter,downstream
28	LOC_Os09g10470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5719176	5723690	-	promoter,downstream
28	LOC_Os02g18410	salt stress root protein RS1, putative, expressed	gene	salt stress root protein RS1, putative, expressed	chr2	10714981	10716778	-	promoter
28	LOC_Os04g31130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18442762	18443109	-	promoter,downstream
28	LOC_Os02g22740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13540933	13542582	-	promoter,downstream
28	LOC_Os08g33100	core histone H2A/H2B/H3/H4, putative, expressed	gene	core histone H2A/H2B/H3/H4, putative, expressed	chr8	20570487	20571280	+	promoter
28	LOC_Os09g16440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	10049545	10055913	+	promoter
28	LOC_Os10g24260	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	12362634	12363302	+	promoter,downstream
28	LOC_Os06g29550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16929565	16931704	+	promoter
28	LOC_Os12g08640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4386719	4387617	-	promoter
28	LOC_Os10g12710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7100626	7107365	+	promoter,downstream
28	LOC_Os09g09170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4909504	4909958	+	promoter
28	LOC_Os11g21900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12108629	12110137	+	promoter,downstream
28	LOC_Os04g31210	bile acid sodium symporter family protein, putative, expressed	gene	bile acid sodium symporter family protein, putative, expressed	chr4	18503977	18509124	+	promoter,downstream
28	LOC_Os04g10530	amidase, putative, expressed	gene	amidase, putative, expressed	chr4	5723438	5727391	+	promoter
28	LOC_Os03g62720	exosome complex exonuclease, putative, expressed	gene	exosome complex exonuclease, putative, expressed	chr3	35486927	35490653	+	promoter
28	LOC_Os10g18600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9361846	9364043	+	promoter,downstream
28	LOC_Os02g40490	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	24554307	24557377	+	promoter
28	LOC_Os05g12030	hypothetical protein	gene	hypothetical protein	chr5	6878159	6882202	+	promoter
28	LOC_Os04g44380	hypothetical protein	gene	hypothetical protein	chr4	26091919	26093051	-	promoter
28	LOC_Os12g27640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16266729	16272775	-	promoter
28	LOC_Os01g60210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	34821935	34822267	+	promoter,downstream
28	LOC_Os07g16720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9811090	9815646	-	promoter,downstream
28	LOC_Os11g34590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19777980	19781216	+	promoter
28	LOC_Os06g30550	hypothetical protein	gene	hypothetical protein	chr6	17677248	17677685	+	promoter,downstream
28	LOC_Os06g28290	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16068092	16068775	+	promoter,downstream
28	LOC_Os06g40460	expressed protein	gene	expressed protein	chr6	24101952	24107384	+	promoter
28	LOC_Os11g22490	hypothetical protein	gene	hypothetical protein	chr11	12464652	12465069	-	promoter,downstream
28	LOC_Os07g04040	expressed protein	gene	expressed protein	chr7	1711202	1713498	+	promoter
28	LOC_Os07g45850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27358925	27360040	-	promoter,downstream
28	LOC_Os05g29735	expressed protein	gene	expressed protein	chr5	17137379	17138288	+	promoter
28	LOC_Os05g44440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25799121	25799781	+	promoter,downstream
28	LOC_Os04g10330	hypothetical protein	gene	hypothetical protein	chr4	5573160	5573951	-	promoter
28	LOC_Os07g05930	hypothetical protein	gene	hypothetical protein	chr7	2857836	2858155	+	promoter
28	LOC_Os10g06180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3165108	3165548	+	promoter,downstream
28	LOC_Os09g03040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1427458	1437513	+	promoter
28	LOC_Os07g20600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11907725	11908225	-	promoter
28	LOC_Os09g17180	hypothetical protein	gene	hypothetical protein	chr9	10540838	10544059	+	promoter
28	LOC_Os07g26300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15119702	15121144	-	promoter,downstream
28	LOC_Os07g32380	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr7	19242272	19246827	-	promoter
28	LOC_Os05g17420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10001815	10006259	-	promoter,downstream
28	LOC_Os01g42580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	24204882	24205628	-	promoter,downstream
28	LOC_Os06g41350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24768047	24768610	+	promoter
28	LOC_Os05g24470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14067407	14070666	-	promoter,downstream
28	LOC_Os06g50300	heat shock protein, putative, expressed	gene	heat shock protein, putative, expressed	chr6	30443413	30449499	-	promoter
28	LOC_Os05g08510	glucosyltransferase, putative	gene	glucosyltransferase, putative	chr5	4644167	4645579	+	promoter
28	LOC_Os09g12430	hypothetical protein	gene	hypothetical protein	chr9	7115096	7116458	-	promoter
28	LOC_Os06g21720	methyltransferase, putative	gene	methyltransferase, putative	chr6	12554481	12554816	+	promoter
28	LOC_Os04g20280	expressed protein	gene	expressed protein	chr4	11326129	11329523	+	promoter
28	LOC_Os11g33380	expressed protein	gene	expressed protein	chr11	19287661	19287891	+	promoter
28	LOC_Os12g33520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20222557	20223826	-	promoter,downstream
28	LOC_Os12g19200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	11145943	11146302	+	promoter,downstream
28	LOC_Os11g26050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14437272	14441786	-	promoter,downstream
28	LOC_Os03g43374	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24182500	24183145	+	promoter,downstream
28	LOC_Os07g46740	FAD-binding domain-containing protein, putative	gene	FAD-binding domain-containing protein, putative	chr7	27935690	27936264	+	promoter,downstream
28	LOC_Os10g26850	hypothetical protein	gene	hypothetical protein	chr10	14023877	14025317	+	promoter
28	LOC_Os08g14480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	8695440	8698674	-	promoter
28	LOC_Os12g11790	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	6391806	6393144	-	promoter
28	LOC_Os08g32150	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr8	19943634	19944797	-	promoter
28	LOC_Os01g31070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16986609	16987947	+	promoter,downstream
28	LOC_Os12g36370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22234810	22235982	-	promoter,downstream
28	LOC_Os10g01800	transferase family protein, putative	gene	transferase family protein, putative	chr10	525123	526307	+	promoter
28	LOC_Os08g31360	glycine-rich protein, putative	gene	glycine-rich protein, putative	chr8	19392463	19392807	+	promoter
28	LOC_Os09g21900	expressed protein	gene	expressed protein	chr9	13258201	13259188	-	promoter,downstream
28	LOC_Os06g29240	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16686153	16686944	+	promoter,downstream
28	LOC_Os11g22740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12615720	12618143	-	promoter,downstream
28	LOC_Os06g38606	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22907435	22911461	+	promoter,downstream
28	LOC_Os06g14120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	7871902	7877828	-	promoter,downstream
28	LOC_Os12g43300	expressed protein	gene	expressed protein	chr12	26839149	26844602	+	promoter
28	LOC_Os11g22070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12218851	12219839	+	promoter
28	LOC_Os04g16050	hypothetical protein	gene	hypothetical protein	chr4	8700571	8701680	+	promoter
28	LOC_Os02g34170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	20431336	20434560	+	promoter,downstream
28	LOC_Os05g05100	expressed protein	gene	expressed protein	chr5	2477879	2478451	-	promoter
28	LOC_Os02g26750	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	15705574	15706932	+	promoter
28	LOC_Os05g19730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11508643	11510199	+	promoter,downstream
28	LOC_Os09g03450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1701580	1703111	+	promoter,downstream
28	LOC_Os12g24890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14276434	14278017	-	promoter
28	LOC_Os06g19730	HEAT repeat family protein, putative, expressed	gene	HEAT repeat family protein, putative, expressed	chr6	11263737	11280719	+	promoter
28	LOC_Os05g17810	SHR5-receptor-like kinase, putative	gene	SHR5-receptor-like kinase, putative	chr5	10240151	10246456	+	promoter
28	LOC_Os10g19100	hypothetical protein	gene	hypothetical protein	chr10	9653240	9655680	-	promoter
28	LOC_Os12g21640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12154831	12159381	-	promoter,downstream
28	LOC_Os05g18770	Sad1 / UNC-like C-terminal domain containing protein, putative, expressed	gene	Sad1 / UNC-like C-terminal domain containing protein, putative, expressed	chr5	10883292	10886698	-	promoter
28	LOC_Os07g28350	hypothetical protein	gene	hypothetical protein	chr7	16548639	16548986	+	promoter,downstream
28	LOC_Os04g44490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26148186	26152804	-	promoter
28	LOC_Os04g22990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13038786	13049241	-	promoter
28	LOC_Os05g08260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4505152	4506300	-	promoter,downstream
28	LOC_Os11g04274	hypothetical protein	gene	hypothetical protein	chr11	1770806	1772632	-	promoter
28	LOC_Os03g36080	expressed protein	gene	expressed protein	chr3	20017155	20018210	-	promoter
28	LOC_Os04g43120	hypothetical protein	gene	hypothetical protein	chr4	25339750	25340261	-	promoter
28	LOC_Os01g31190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17053469	17057332	-	promoter
28	LOC_Os12g35230	hypothetical protein	gene	hypothetical protein	chr12	21380244	21381083	-	promoter
28	LOC_Os09g25570	aspartic proteinase, putative, expressed	gene	aspartic proteinase, putative, expressed	chr9	15343636	15346122	+	promoter
28	LOC_Os09g12820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7369444	7370941	+	promoter,downstream
28	LOC_Os04g05910	hypothetical protein	gene	hypothetical protein	chr4	3052488	3052712	-	promoter,downstream
28	LOC_Os01g16900	dehydrogenase, putative, expressed	gene	dehydrogenase, putative, expressed	chr1	9664385	9669213	+	promoter
28	LOC_Os08g45050	hypothetical protein	gene	hypothetical protein	chr8	28285233	28285577	-	promoter
28	LOC_Os03g30720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17507073	17508266	+	promoter
28	LOC_Os04g02110	disease resistance protein RGA3, putative, expressed	gene	disease resistance protein RGA3, putative, expressed	chr4	680114	686715	-	promoter,downstream
28	LOC_Os11g27790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15528262	15530045	-	promoter,downstream
28	LOC_Os06g32630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18975073	18979695	-	promoter
28	LOC_Os04g13910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7761569	7762436	+	promoter,downstream
28	LOC_Os09g17400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10640535	10645197	-	promoter,downstream
28	LOC_Os12g20280	hypothetical protein	gene	hypothetical protein	chr12	11841154	11842696	+	promoter,downstream
28	LOC_Os01g56170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	32342881	32343795	+	promoter
28	LOC_Os07g28970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	16993945	16994660	+	promoter,downstream
28	LOC_Os08g14140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8450664	8450918	-	promoter
28	LOC_Os04g07850	hypothetical protein	gene	hypothetical protein	chr4	4174079	4174438	+	promoter,downstream
28	LOC_Os05g37080	No apical meristem protein, putative, expressed	gene	No apical meristem protein, putative, expressed	chr5	21605536	21607172	-	promoter
28	LOC_Os04g07370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3917302	3923198	-	promoter,downstream
28	LOC_Os07g14420	hypothetical protein	gene	hypothetical protein	chr7	8229627	8230354	+	promoter
28	LOC_Os08g29230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17917306	17921811	+	promoter,downstream
28	LOC_Os01g63900	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr1	37075424	37078495	+	promoter
28	LOC_Os09g29010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17631049	17632587	+	promoter
28	LOC_Os08g33770	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	21118830	21119969	-	promoter
28	LOC_Os09g12920	hypothetical protein	gene	hypothetical protein	chr9	7443495	7443965	+	promoter,downstream
28	LOC_Os04g48670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28830372	28831421	-	promoter,downstream
28	LOC_Os09g21840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13229087	13233448	+	promoter
28	LOC_Os04g08670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4703851	4706880	+	promoter,downstream
28	LOC_Os01g16540	NEDD8-activating enzyme E1 catalytic subunit, putative, expressed	gene	NEDD8-activating enzyme E1 catalytic subunit, putative, expressed	chr1	9385170	9389611	+	promoter
28	LOC_Os10g10460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5762643	5768398	+	promoter,downstream
28	LOC_Os03g59420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	33817156	33820446	-	promoter
28	LOC_Os03g29950	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	gene	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	chr3	17066602	17071063	+	promoter
28	LOC_Os06g36210	amino acid transporter, putative, expressed	gene	amino acid transporter, putative, expressed	chr6	21207195	21213384	+	promoter
28	LOC_Os03g35670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19755120	19757656	-	promoter,downstream
28	LOC_Os10g31390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16393599	16394561	+	promoter
28	LOC_Os10g22362	hypothetical protein	gene	hypothetical protein	chr10	11497118	11497723	+	promoter
28	LOC_Os08g11300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6639631	6645277	-	promoter,downstream
28	LOC_Os10g34090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	18124785	18127621	-	promoter,downstream
28	LOC_Os07g20610	TKL_IRAK_DUF26.2 - DUF26 kinases have homology to DUF26 containing loci	gene	TKL_IRAK_DUF26.2 - DUF26 kinases have homology to DUF26 containing loci	chr7	11908843	11912698	-	promoter
28	LOC_Os03g39362	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21877420	21877734	-	promoter,downstream
28	LOC_Os12g18340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	10583400	10583816	-	promoter
28	LOC_Os02g36940	uncharacterized Cys-rich domain containing protein, putative, expressed	gene	uncharacterized Cys-rich domain containing protein, putative, expressed	chr2	22305964	22307293	-	promoter
28	LOC_Os06g32770	OsSCP36 - Putative Serine Carboxypeptidase homologue	gene	OsSCP36 - Putative Serine Carboxypeptidase homologue	chr6	19055110	19057427	-	promoter
28	LOC_Os06g37650	hypothetical protein	gene	hypothetical protein	chr6	22304094	22305544	+	promoter
28	LOC_Os08g30120	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr8	18513893	18517880	+	promoter
28	LOC_Os12g14870	hypothetical protein	gene	hypothetical protein	chr12	8511297	8511725	+	promoter,downstream
28	LOC_Os02g28380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16764486	16767580	-	promoter
28	LOC_Os03g24264	unknown	gene	unknown	chr3	13806504	13807108	+	promoter
28	LOC_Os11g16430	diphthamide biosynthesis protein, putative, expressed	gene	diphthamide biosynthesis protein, putative, expressed	chr11	9084111	9089760	+	promoter
28	LOC_Os02g20640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12161799	12163679	-	promoter
28	LOC_Os02g45220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	27454672	27455115	-	promoter,downstream
28	LOC_Os01g22880	hypothetical protein	gene	hypothetical protein	chr1	12857611	12858342	-	promoter
28	LOC_Os08g22219	unknown	gene	unknown	chr8	13400927	13401676	+	promoter
28	LOC_Os11g23150	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	12860325	12861188	+	promoter
28	LOC_Os12g20220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11791311	11794970	+	promoter
28	LOC_Os08g06920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3855466	3856506	+	promoter
28	LOC_Os01g35440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19610204	19611784	+	promoter,downstream
28	LOC_Os02g36790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	22178949	22183425	+	promoter,downstream
28	LOC_Os01g64230	long cell-linked locus protein, putative, expressed	gene	long cell-linked locus protein, putative, expressed	chr1	37298670	37300119	+	promoter
28	LOC_Os05g19910	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr5	11609370	11614952	-	promoter
28	LOC_Os04g21470	PPR repeat domain containing protein, putative	gene	PPR repeat domain containing protein, putative	chr4	12133604	12134080	+	promoter,downstream
28	LOC_Os02g29580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17595066	17595673	+	promoter
28	LOC_Os01g73890	transcription initiation factor IIA gamma chain, putative, expressed	gene	transcription initiation factor IIA gamma chain, putative, expressed	chr1	42817987	42820083	+	promoter
28	LOC_Os10g02644	hypothetical protein	gene	hypothetical protein	chr10	1022423	1022632	-	promoter,downstream
28	LOC_Os04g07770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4151804	4157066	-	promoter,downstream
28	LOC_Os12g02280	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr12	717524	721216	+	promoter
28	LOC_Os10g27460	hypothetical protein	gene	hypothetical protein	chr10	14414839	14415393	-	promoter
28	LOC_Os02g14040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7671940	7672764	-	promoter,downstream
28	LOC_Os05g33560	hypothetical protein	gene	hypothetical protein	chr5	19652207	19652851	-	promoter
28	LOC_Os12g23130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13078495	13082675	-	promoter
28	LOC_Os12g33630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20272500	20273204	+	promoter
28	LOC_Os09g10010	expressed protein	gene	expressed protein	chr9	5453023	5454007	+	promoter
28	LOC_Os09g11620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6487693	6488262	-	promoter
28	LOC_Os02g46260	OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed	chr2	28206197	28211408	+	promoter
28	LOC_Os09g08840	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	4659972	4660424	-	promoter,downstream
28	LOC_Os03g33172	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18972672	18974105	-	promoter,downstream
28	LOC_Os05g04270	hypothetical protein	gene	hypothetical protein	chr5	1943500	1943763	-	promoter,downstream
28	LOC_Os01g34500	hypothetical protein	gene	hypothetical protein	chr1	19021457	19022867	-	promoter
28	LOC_Os07g43100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25828715	25829209	+	promoter,downstream
28	LOC_Os02g17990	Leucine Rich Repeat family protein, expressed	gene	Leucine Rich Repeat family protein, expressed	chr2	10437391	10440984	+	promoter
28	LOC_Os05g11550	serine/threonine protein phosphatase 5, putative, expressed	gene	serine/threonine protein phosphatase 5, putative, expressed	chr5	6529736	6537295	+	promoter
28	LOC_Os05g16350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9260564	9265122	+	promoter
28	LOC_Os03g22130	hypothetical protein	gene	hypothetical protein	chr3	12685943	12687203	+	promoter
28	LOC_Os01g74260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	43026628	43032776	+	promoter
28	LOC_Os08g11380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6687103	6689280	+	promoter,downstream
28	LOC_Os10g20380	uncharacterized transporter C11D3.06, putative	gene	uncharacterized transporter C11D3.06, putative	chr10	10171438	10172807	-	promoter
28	LOC_Os11g11080	hypothetical protein	gene	hypothetical protein	chr11	6126315	6126584	-	promoter
28	LOC_Os10g29774	unknown	gene	unknown	chr10	15409981	15410870	-	promoter
28	LOC_Os03g15840	glycosyl transferase, group 1 domain containing protein, expressed	gene	glycosyl transferase, group 1 domain containing protein, expressed	chr3	8736058	8740135	+	promoter
28	LOC_Os03g39460	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21926319	21926984	-	promoter,downstream
28	LOC_Os02g25300	hypothetical protein	gene	hypothetical protein	chr2	14753100	14753504	+	promoter,downstream
28	LOC_Os04g23970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	13692599	13693640	+	promoter,downstream
28	LOC_Os07g38340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	23032452	23039118	-	promoter
28	LOC_Os07g27190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15788098	15788518	-	promoter,downstream
28	LOC_Os11g10010	hypothetical protein	gene	hypothetical protein	chr11	5363167	5363846	-	promoter,downstream
28	LOC_Os05g14290	hypothetical protein	gene	hypothetical protein	chr5	8027103	8029068	-	promoter
28	LOC_Os08g03960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1886097	1888536	+	promoter
28	LOC_Os05g38070	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	22255006	22255662	-	promoter,downstream
28	LOC_Os10g26660	expressed protein	gene	expressed protein	chr10	13848692	13854411	+	promoter
28	LOC_Os06g27430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15523449	15523904	-	promoter,downstream
28	LOC_Os05g03690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1603215	1608924	+	promoter
28	LOC_Os09g13430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7769806	7772168	+	promoter
28	LOC_Os12g30680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18396150	18400172	+	promoter,downstream
28	LOC_Os04g20330	UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed	gene	UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed	chr4	11366017	11368020	-	promoter
28	LOC_Os05g04280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1945449	1946175	+	promoter
28	LOC_Os01g39210	hypothetical protein	gene	hypothetical protein	chr1	22060037	22060366	-	promoter
28	LOC_Os09g08630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4512274	4515617	+	promoter
28	LOC_Os06g34410	hypothetical protein	gene	hypothetical protein	chr6	20024004	20024330	-	promoter
28	LOC_Os12g24940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14321142	14321591	-	promoter,downstream
28	LOC_Os12g13530	hypothetical protein	gene	hypothetical protein	chr12	7589420	7591641	+	promoter,downstream
28	LOC_Os01g45740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25969116	25971621	+	promoter
28	LOC_Os12g13890	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	7871586	7872653	-	promoter
28	LOC_Os09g07660	 ELMO/CED-12 family protein, putative, expressed	gene	 ELMO/CED-12 family protein, putative, expressed	chr9	3854216	3861968	+	promoter
28	LOC_Os11g07980	ion channel nompc, putative, expressed	gene	ion channel nompc, putative, expressed	chr11	4145989	4150642	-	promoter
28	LOC_Os12g09450	hypothetical protein	gene	hypothetical protein	chr12	4949953	4950303	-	promoter
28	LOC_Os07g16450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9632305	9635594	-	promoter,downstream
28	LOC_Os04g51850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	30563017	30564808	+	promoter
28	LOC_Os11g38430	hypothetical protein	gene	hypothetical protein	chr11	22293612	22294038	+	promoter
28	LOC_Os11g26920	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr11	15009123	15012564	-	promoter
28	LOC_Os02g37270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	22535037	22535930	-	promoter,downstream
28	LOC_Os02g49500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30248718	30250587	-	promoter,downstream
28	LOC_Os05g09430	expressed protein	gene	expressed protein	chr5	5292552	5293310	-	promoter
28	LOC_Os01g28280	hypothetical protein	gene	hypothetical protein	chr1	15841936	15842753	-	promoter
28	LOC_Os03g45500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25675236	25676712	+	promoter,downstream
28	LOC_Os01g73300	VAMP-like protein YKT62, putative, expressed	gene	VAMP-like protein YKT62, putative, expressed	chr1	42478619	42482328	-	promoter
28	LOC_Os04g11070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6012168	6013169	+	promoter,downstream
28	LOC_Os10g18620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9374617	9375015	-	promoter,downstream
28	LOC_Os05g39040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22833654	22838487	-	promoter
28	LOC_Os06g47020	ZmEBE protein, putative	gene	ZmEBE protein, putative	chr6	28513438	28514082	+	promoter
28	LOC_Os03g28070	hypothetical protein	gene	hypothetical protein	chr3	16132240	16133420	-	promoter
28	LOC_Os11g02930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1010286	1011921	-	promoter,downstream
28	LOC_Os02g44060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26586570	26589814	+	promoter
28	LOC_Os06g35620	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	20782545	20783027	-	promoter
28	LOC_Os07g22370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12554398	12554902	+	promoter
28	LOC_Os10g06140	OsWAK105 - OsWAK receptor-like protein kinase, expressed	gene	OsWAK105 - OsWAK receptor-like protein kinase, expressed	chr10	3120996	3126249	-	promoter
28	LOC_Os07g29280	hypothetical protein	gene	hypothetical protein	chr7	17158553	17158780	+	promoter
28	LOC_Os12g15100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8612491	8616076	+	promoter
28	LOC_Os05g19880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11584218	11586037	+	promoter,downstream
28	LOC_Os07g05620	CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	gene	CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	chr7	2642541	2646874	-	promoter
28	LOC_Os04g38110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22494864	22497180	-	promoter,downstream
28	LOC_Os08g23530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14243949	14244692	+	promoter,downstream
28	LOC_Os02g38540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23296233	23298128	+	promoter
28	LOC_Os07g13080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7495014	7497808	+	promoter
28	LOC_Os06g31630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18382057	18385358	-	promoter
28	LOC_Os08g35840	hypothetical protein	gene	hypothetical protein	chr8	22596567	22597309	-	promoter,downstream
28	LOC_Os01g43200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	24670841	24671182	+	promoter,downstream
28	LOC_Os10g03020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1252540	1253655	+	promoter,downstream
28	LOC_Os10g22660	hypothetical protein	gene	hypothetical protein	chr10	11707953	11708420	-	promoter
28	LOC_Os05g09320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5204064	5207559	+	promoter,downstream
28	LOC_Os05g48440	FAD-binding domain-containing protein, putative	gene	FAD-binding domain-containing protein, putative	chr5	27712883	27713757	-	promoter,downstream
28	LOC_Os03g37000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20510018	20512163	+	promoter
28	LOC_Os03g41970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23318686	23319666	-	promoter
28	LOC_Os11g24290	OsSCP51 - Putative Serine Carboxypeptidase homologue	gene	OsSCP51 - Putative Serine Carboxypeptidase homologue	chr11	13373509	13377536	-	promoter
28	LOC_Os09g17240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10574908	10576723	+	promoter
28	LOC_Os04g48690	hypothetical protein	gene	hypothetical protein	chr4	28842053	28842496	+	promoter
28	LOC_Os04g43970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	25876244	25878772	+	promoter
28	LOC_Os12g28450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16806880	16807875	-	promoter
28	LOC_Os12g29250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	17314226	17317264	+	promoter
28	LOC_Os04g45380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26653653	26656509	-	promoter,downstream
28	LOC_Os07g26890	hypothetical protein	gene	hypothetical protein	chr7	15570793	15571017	+	promoter
28	LOC_Os06g28680	hypothetical protein	gene	hypothetical protein	chr6	16334040	16334907	+	promoter,downstream
28	LOC_Os10g08190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4449265	4450989	+	promoter,downstream
28	LOC_Os04g56340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33400708	33400962	+	promoter,downstream
28	LOC_Os11g10450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5690063	5692027	-	promoter,downstream
28	LOC_Os02g44150	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	26719444	26719869	-	promoter
28	LOC_Os02g43260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26051049	26056208	+	promoter
28	LOC_Os05g26710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15452271	15454517	+	promoter
28	LOC_Os12g13340	expressed protein	gene	expressed protein	chr12	7438434	7443509	-	promoter
28	LOC_Os12g17370	hypothetical protein	gene	hypothetical protein	chr12	9944312	9946167	+	promoter
28	LOC_Os05g51960	hypothetical protein	gene	hypothetical protein	chr5	29754197	29756054	-	promoter,downstream
28	LOC_Os11g47060	expressed protein	gene	expressed protein	chr11	27750429	27750800	-	promoter
28	LOC_Os03g24050	expressed protein	gene	expressed protein	chr3	13648743	13654007	-	promoter
28	LOC_Os03g36060	hypothetical protein	gene	hypothetical protein	chr3	20004128	20004433	-	promoter
28	LOC_Os09g16640	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	10198798	10200195	+	promoter
28	LOC_Os09g13960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8225665	8226157	+	promoter,downstream
28	LOC_Os06g25660	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	14990042	14993388	+	promoter,downstream
28	LOC_Os01g26410	hypothetical protein	gene	hypothetical protein	chr1	14986547	14987343	+	promoter
28	LOC_Os10g12560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7005807	7006937	-	promoter
28	LOC_Os05g49120	NLI interacting factor-like phosphatase, putative, expressed	gene	NLI interacting factor-like phosphatase, putative, expressed	chr5	28113932	28119826	+	promoter
28	LOC_Os08g43040	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr8	27199557	27202200	+	promoter
28	LOC_Os01g19580	hypothetical protein	gene	hypothetical protein	chr1	11095167	11097539	+	promoter
28	LOC_Os01g50520	cytochrome P450 monooxygenase CYP711A12, putative	gene	cytochrome P450 monooxygenase CYP711A12, putative	chr1	29019799	29020292	+	promoter
28	LOC_Os07g28820	ribonuclease 2-5A family protein, expressed	gene	ribonuclease 2-5A family protein, expressed	chr7	16869475	16874362	+	promoter
28	LOC_Os09g19490	hypothetical protein	gene	hypothetical protein	chr9	11661543	11661995	+	promoter
28	LOC_Os11g06920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	3397842	3404144	+	promoter
28	LOC_Os02g07290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3738392	3738964	+	promoter
28	LOC_Os09g22180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13420567	13421655	-	promoter
28	LOC_Os04g14020	hypothetical protein	gene	hypothetical protein	chr4	7823154	7824284	-	promoter
28	LOC_Os07g16550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9705459	9706500	-	promoter,downstream
28	LOC_Os01g31100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17004458	17005228	+	promoter,downstream
28	LOC_Os01g40520	hypothetical protein	gene	hypothetical protein	chr1	22895037	22895777	+	promoter
28	LOC_Os10g21150	hypothetical protein	gene	hypothetical protein	chr10	10699234	10700047	+	promoter
28	LOC_Os09g06590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3130087	3131619	+	promoter,downstream
28	LOC_Os12g28850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17046781	17050411	-	promoter
28	LOC_Os02g28510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16857097	16858879	+	promoter,downstream
28	LOC_Os12g31260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18792634	18793224	+	promoter,downstream
28	LOC_Os08g19630	hypothetical protein	gene	hypothetical protein	chr8	11746533	11746775	+	promoter,downstream
28	LOC_Os11g41630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	24513621	24514142	-	promoter
28	LOC_Os07g26270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15105677	15106881	+	promoter,downstream
28	LOC_Os06g40410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24060015	24066602	-	promoter
28	LOC_Os09g24260	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr9	14403530	14412662	+	promoter
28	LOC_Os07g41890	DC1 domain-containing protein, putative	gene	DC1 domain-containing protein, putative	chr7	25096712	25097269	+	promoter
28	LOC_Os01g34740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19163379	19163816	-	promoter,downstream
28	LOC_Os10g09210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4993514	4994194	-	promoter,downstream
28	LOC_Os03g01730	expressed protein	gene	expressed protein	chr3	464176	467044	+	promoter
28	LOC_Os06g20540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11825914	11826683	+	promoter
28	LOC_Os05g16900	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9626239	9626833	-	promoter
28	LOC_Os08g03450	ribosomal protein L37, putative, expressed	gene	ribosomal protein L37, putative, expressed	chr8	1618216	1620403	+	promoter
28	LOC_Os07g22210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12396366	12396857	-	promoter,downstream
28	LOC_Os11g28780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16213653	16216944	-	promoter
28	LOC_Os11g01980	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	524467	525275	-	promoter
28	LOC_Os01g31600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17293283	17295103	-	promoter
28	LOC_Os10g04480	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	2121574	2122715	+	promoter
28	LOC_Os04g24000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13707090	13707347	-	promoter,downstream
28	LOC_Os02g17080	OsSub16 - Putative Subtilisin homologue	gene	OsSub16 - Putative Subtilisin homologue	chr2	9764689	9770195	-	promoter
28	LOC_Os04g30850	hypothetical protein	gene	hypothetical protein	chr4	18259291	18260169	+	promoter,downstream
28	LOC_Os09g02530	cyclin-like F-box, putative, expressed	gene	cyclin-like F-box, putative, expressed	chr9	1054332	1055395	+	promoter
28	LOC_Os07g12710	GIY-YIG catalytic domain containing protein, putative, expressed	gene	GIY-YIG catalytic domain containing protein, putative, expressed	chr7	7257619	7259434	-	promoter
28	LOC_Os05g20920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12301035	12303268	+	promoter
28	LOC_Os05g17050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9722379	9740728	+	promoter,downstream
28	LOC_Os11g20530	hypothetical protein	gene	hypothetical protein	chr11	11898844	11899824	-	promoter
28	LOC_Os05g38450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	22482276	22484485	+	promoter
28	LOC_Os04g36550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	21877158	21880370	-	promoter
28	LOC_Os04g48630	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	28792870	28793364	+	promoter,downstream
28	LOC_Os02g12330	hypothetical protein	gene	hypothetical protein	chr2	6418378	6419378	+	promoter
28	LOC_Os04g13610	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr4	7596633	7597247	+	promoter,downstream
28	LOC_Os12g03220	hypothetical protein	gene	hypothetical protein	chr12	1230128	1231993	-	promoter
28	LOC_Os10g09680	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	5250745	5251880	+	promoter
28	LOC_Os01g56230	transmembrane protein 56, putative, expressed	gene	transmembrane protein 56, putative, expressed	chr1	32380166	32384650	-	promoter
28	LOC_Os10g35730	pentatricopeptide repeat domain containing protein, putative, expressed	gene	pentatricopeptide repeat domain containing protein, putative, expressed	chr10	19032641	19034307	+	promoter
28	LOC_Os01g57324	hypothetical protein	gene	hypothetical protein	chr1	33134789	33135571	+	promoter
28	LOC_Os05g01860	hypothetical protein	gene	hypothetical protein	chr5	505648	506039	-	promoter
28	LOC_Os03g34030	hypothetical protein	gene	hypothetical protein	chr3	19407972	19409653	-	promoter
28	LOC_Os09g07650	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	3852936	3853370	+	promoter
28	LOC_Os10g39480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	21010953	21011582	+	promoter
28	LOC_Os06g43580	hypothetical protein	gene	hypothetical protein	chr6	26207298	26211004	+	promoter
28	LOC_Os05g26550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15365976	15367190	+	promoter,downstream
28	LOC_Os06g08940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	4504108	4507416	+	promoter
28	LOC_Os12g12460	hypothetical protein	gene	hypothetical protein	chr12	6864813	6865761	-	promoter
28	LOC_Os06g25980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15213558	15214163	+	promoter
28	LOC_Os04g19390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10794485	10797047	+	promoter
28	LOC_Os07g17040	Mak16 protein domain containing protein	gene	Mak16 protein domain containing protein	chr7	10029865	10033708	-	promoter
28	LOC_Os06g10380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	5331894	5334850	+	promoter
28	LOC_Os06g16380	hypothetical protein	gene	hypothetical protein	chr6	9348328	9349580	-	promoter
28	LOC_Os01g31140	hypothetical protein	gene	hypothetical protein	chr1	17032682	17032990	-	promoter,downstream
28	LOC_Os01g23560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13227045	13228827	-	promoter,downstream
28	LOC_Os11g26080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14451417	14457942	+	promoter,downstream
28	LOC_Os08g34320	expressed protein	gene	expressed protein	chr8	21534274	21540402	-	promoter
28	LOC_Os11g08900	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4707510	4708568	+	promoter
28	LOC_Os12g08700	expressed protein	gene	expressed protein	chr12	4411899	4414891	-	promoter
28	LOC_Os01g63340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36709368	36713570	-	promoter
28	LOC_Os08g35280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	22265784	22266140	-	promoter,downstream
28	LOC_Os10g17150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8539906	8541159	+	promoter,downstream
28	LOC_Os08g05240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	2723971	2727641	-	promoter,downstream
28	LOC_Os12g36480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22287045	22291790	+	promoter
28	LOC_Os05g19290	hypothetical protein	gene	hypothetical protein	chr5	11210928	11211167	-	promoter
28	LOC_Os07g17150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10075254	10079067	-	promoter
28	LOC_Os11g14680	hypothetical protein	gene	hypothetical protein	chr11	8264055	8264943	+	promoter
28	LOC_Os07g22350	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	gene	glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed	chr7	12543217	12549067	-	promoter
28	LOC_Os07g16120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9386314	9392013	-	promoter
28	LOC_Os01g65140	peptide transporter PTR2, putative, expressed	gene	peptide transporter PTR2, putative, expressed	chr1	37809727	37811086	+	promoter
28	LOC_Os04g15630	xa21, putative	gene	xa21, putative	chr4	8492525	8495230	+	promoter
28	LOC_Os08g24300	hypothetical protein	gene	hypothetical protein	chr8	14661004	14661292	-	promoter
28	LOC_Os04g16440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8939427	8940188	-	promoter
28	LOC_Os11g15550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8804117	8804653	-	promoter,downstream
28	LOC_Os08g27370	hypothetical protein	gene	hypothetical protein	chr8	16710790	16711134	+	promoter,downstream
28	LOC_Os06g22040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12772279	12773486	+	promoter,downstream
28	LOC_Os06g07670	hypothetical protein	gene	hypothetical protein	chr6	3712856	3713320	+	promoter
28	LOC_Os07g17060	hypothetical protein	gene	hypothetical protein	chr7	10039755	10040376	+	promoter
28	LOC_Os06g01534	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	318704	324531	+	promoter
28	LOC_Os12g19630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11446271	11446762	+	promoter,downstream
28	LOC_Os10g15020	hypothetical protein	gene	hypothetical protein	chr10	7882223	7882720	+	promoter,downstream
28	LOC_Os04g23200	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	13183545	13185941	-	promoter,downstream
28	LOC_Os12g06450	hypothetical protein	gene	hypothetical protein	chr12	3095623	3096105	-	promoter,downstream
28	LOC_Os09g02120	hypothetical protein	gene	hypothetical protein	chr9	797021	797557	+	promoter
28	LOC_Os04g06390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3379567	3380916	+	promoter,downstream
28	LOC_Os11g10560	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	5788344	5789535	-	promoter
28	LOC_Os01g06010	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	gene	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	chr1	2871110	2871988	+	promoter
28	LOC_Os05g17930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10308623	10310190	+	promoter,downstream
28	LOC_Os08g15410	hypothetical protein	gene	hypothetical protein	chr8	9374248	9376002	-	promoter
28	LOC_Os06g22100	DNA binding protein, putative, expressed	gene	DNA binding protein, putative, expressed	chr6	12824420	12826566	+	promoter
28	LOC_Os10g01008	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8752	11288	+	promoter,downstream
28	LOC_Os06g37530	hypothetical protein	gene	hypothetical protein	chr6	22214824	22216864	-	promoter
28	LOC_Os01g36250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20069123	20075183	-	promoter
28	LOC_Os08g16150	hypothetical protein	gene	hypothetical protein	chr8	9844709	9845091	-	promoter,downstream
28	LOC_Os08g25610	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr8	15584679	15586646	-	promoter
28	LOC_Os09g14360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8480463	8483915	-	promoter,downstream
28	LOC_Os05g17740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10198552	10198986	-	promoter,downstream
28	LOC_Os08g29650	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr8	18186693	18193029	+	promoter
28	LOC_Os08g24470	hypothetical protein	gene	hypothetical protein	chr8	14777274	14780145	+	promoter
28	LOC_Os05g09010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	4992017	4993557	-	promoter
28	LOC_Os06g15490	hypothetical protein	gene	hypothetical protein	chr6	8791334	8791774	+	promoter,downstream
28	LOC_Os08g21869	hypothetical protein	gene	hypothetical protein	chr8	13095518	13097572	+	promoter
28	LOC_Os01g06300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	2990397	2996317	-	promoter
28	LOC_Os03g46840	hypothetical protein	gene	hypothetical protein	chr3	26491728	26493224	+	promoter
28	LOC_Os10g06210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3187299	3188719	-	promoter,downstream
28	LOC_Os04g12180	TKL_IRAK_DUF26-lc.8 - DUF26 kinases have homology to DUF26 containing loci	gene	TKL_IRAK_DUF26-lc.8 - DUF26 kinases have homology to DUF26 containing loci	chr4	6704668	6707454	-	promoter
28	LOC_Os04g04999	hypothetical protein	gene	hypothetical protein	chr4	2418889	2419425	+	promoter
28	LOC_Os06g26280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15387453	15388457	-	promoter,downstream
28	LOC_Os06g28520	hypothetical protein	gene	hypothetical protein	chr6	16216265	16218075	+	promoter,downstream
28	LOC_Os09g37560	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	21651440	21652048	+	promoter
28	LOC_Os05g03100	HECT-domain domain containing protein, expressed	gene	HECT-domain domain containing protein, expressed	chr5	1223947	1230041	+	promoter
28	LOC_Os05g26180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15177788	15182125	-	promoter
28	LOC_Os11g19400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11151362	11153439	-	promoter,downstream
28	LOC_Os07g27100	hypothetical protein	gene	hypothetical protein	chr7	15712062	15712361	-	promoter
28	LOC_Os08g17350	hypothetical protein	gene	hypothetical protein	chr8	10612096	10612678	-	promoter,downstream
28	LOC_Os04g11300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6164203	6166820	-	promoter,downstream
28	LOC_Os11g26070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14444561	14449628	+	promoter,downstream
28	LOC_Os09g16380	pleiotropic drug resistance protein, putative	gene	pleiotropic drug resistance protein, putative	chr9	10007837	10020831	-	promoter
28	LOC_Os10g12740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7118735	7123788	-	promoter
28	LOC_Os02g28760	hypothetical protein	gene	hypothetical protein	chr2	17013793	17014056	+	promoter,downstream
28	LOC_Os02g21950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13049262	13049837	-	promoter,downstream
28	LOC_Os03g33400	hypothetical protein	gene	hypothetical protein	chr3	19096256	19096852	-	promoter,downstream
28	LOC_Os04g02460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	892646	893599	-	promoter
28	LOC_Os10g10000	hypothetical protein	gene	hypothetical protein	chr10	5443970	5444284	+	promoter
28	LOC_Os02g12490	expressed protein	gene	expressed protein	chr2	6529685	6533027	-	promoter
28	LOC_Os08g19089	unknown	gene	unknown	chr8	11390436	11390737	+	promoter,downstream
28	LOC_Os10g24580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12546628	12551142	-	promoter
28	LOC_Os10g06220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3191174	3192815	+	promoter
28	LOC_Os06g13120	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	7200592	7202995	-	promoter
28	LOC_Os08g11170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6563882	6565562	+	promoter
28	LOC_Os06g19720	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11259820	11260110	+	promoter,downstream
28	LOC_Os11g29330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	16541907	16542362	-	promoter
28	LOC_Os03g40014	unknown	gene	unknown	chr3	22228986	22229966	+	promoter
28	LOC_Os08g12330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7263777	7266396	+	promoter,downstream
28	LOC_Os09g04860	hypothetical protein	gene	hypothetical protein	chr9	2585421	2586290	+	promoter,downstream
28	LOC_Os09g24402	chloroplast 50S ribosomal protein L23, putative	gene	chloroplast 50S ribosomal protein L23, putative	chr9	14504374	14504655	+	promoter
28	LOC_Os08g30260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18595963	18599109	+	promoter
28	LOC_Os08g17540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10730527	10731169	-	promoter,downstream
28	LOC_Os04g09410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	5021270	5024346	-	promoter
28	LOC_Os01g36050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19949226	19950121	+	promoter
28	LOC_Os08g17080	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr8	10452821	10457049	+	promoter,downstream
28	LOC_Os06g47900	expressed protein	gene	expressed protein	chr6	28976494	28979806	+	promoter
28	LOC_Os12g29970	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	17883039	17884249	+	promoter
28	LOC_Os01g28460	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	15944478	15946072	+	promoter
28	LOC_Os04g12360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6813065	6813819	-	promoter,downstream
28	LOC_Os12g33250	ligA, putative	gene	ligA, putative	chr12	20089739	20090221	-	promoter,downstream
28	LOC_Os10g18310	hypothetical protein	gene	hypothetical protein	chr10	9233184	9233729	-	promoter
28	LOC_Os10g06390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3282897	3283325	-	promoter,downstream
28	LOC_Os11g20410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11807574	11808062	+	promoter,downstream
28	LOC_Os07g26390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15163415	15167938	-	promoter,downstream
28	LOC_Os05g16440	hypothetical protein	gene	hypothetical protein	chr5	9336636	9337205	+	promoter,downstream
28	LOC_Os09g14000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8246630	8247257	+	promoter,downstream
28	LOC_Os05g30970	copine, putative, expressed	gene	copine, putative, expressed	chr5	17922768	17929397	+	promoter
28	LOC_Os06g22740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13225911	13228703	-	promoter,downstream
28	LOC_Os12g05137	unknown	gene	unknown	chr12	2267863	2268350	-	promoter
28	LOC_Os06g37740	hypothetical protein	gene	hypothetical protein	chr6	22348654	22349127	+	promoter
28	LOC_Os04g07790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4144378	4146262	-	promoter,downstream
28	LOC_Os02g49210	hypothetical protein	gene	hypothetical protein	chr2	30075722	30079876	-	promoter
28	LOC_Os06g25294	60S ribosomal protein L18a-1, putative, expressed	gene	60S ribosomal protein L18a-1, putative, expressed	chr6	14808930	14814857	-	promoter,downstream
28	LOC_Os04g55200	coatomer subunit epsilon, putative, expressed	gene	coatomer subunit epsilon, putative, expressed	chr4	32633056	32634546	+	promoter
28	LOC_Os07g47620	universal stress protein domain containing protein, putative, expressed	gene	universal stress protein domain containing protein, putative, expressed	chr7	28467396	28469581	+	promoter
28	LOC_Os05g10350	hypothetical protein	gene	hypothetical protein	chr5	5648747	5649016	-	promoter,downstream
28	LOC_Os11g45480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	27059420	27061708	+	promoter
28	LOC_Os12g15222	expressed protein	gene	expressed protein	chr12	8667435	8676890	-	promoter
28	LOC_Os11g18520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10434110	10436048	+	promoter
28	LOC_Os08g30200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	18559457	18560737	+	promoter
28	LOC_Os12g18460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10672302	10679050	-	promoter,downstream
28	LOC_Os05g26500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15346487	15350949	+	promoter
28	LOC_Os11g44790	EAP30/Vps36 family domain containing protein	gene	EAP30/Vps36 family domain containing protein	chr11	26634033	26636936	+	promoter
28	LOC_Os02g56240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	34388001	34388696	-	promoter
28	LOC_Os08g11040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6495651	6499106	+	promoter
28	LOC_Os08g21050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12583229	12585428	+	promoter,downstream
28	LOC_Os03g33074	hypothetical protein	gene	hypothetical protein	chr3	18924491	18924773	+	promoter,downstream
28	LOC_Os02g46900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	28603749	28606697	-	promoter,downstream
28	LOC_Os10g22350	hypothetical protein	gene	hypothetical protein	chr10	11484077	11489987	-	promoter
28	LOC_Os08g33260	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	20717692	20719712	+	promoter
28	LOC_Os08g03730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	1772406	1774947	+	promoter,downstream
28	LOC_Os09g39890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22867656	22871158	+	promoter
28	LOC_Os07g45590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27208580	27212120	+	promoter
28	LOC_Os07g30760	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr7	18202452	18204167	+	promoter
28	LOC_Os03g32850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18789666	18793766	+	promoter,downstream
28	LOC_Os12g13220	hypothetical protein	gene	hypothetical protein	chr12	7360838	7361448	+	promoter,downstream
28	LOC_Os10g08130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4409577	4412427	-	promoter,downstream
28	LOC_Os07g31320	expressed protein	gene	expressed protein	chr7	18544771	18545860	-	promoter,downstream
28	LOC_Os03g42190	expressed protein	gene	expressed protein	chr3	23462890	23464627	-	promoter
28	LOC_Os04g10200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5507686	5513784	-	promoter,downstream
28	LOC_Os03g52960	hypothetical protein	gene	hypothetical protein	chr3	30368652	30369290	-	promoter
28	LOC_Os10g39084	hypothetical protein	gene	hypothetical protein	chr10	20762008	20762339	+	promoter
28	LOC_Os03g29730	expressed protein	gene	expressed protein	chr3	16936454	16939793	-	promoter
28	LOC_Os11g31440	hypothetical protein	gene	hypothetical protein	chr11	17904271	17906116	+	promoter
28	LOC_Os10g14004	unknown	gene	unknown	chr10	7628599	7628808	+	promoter
28	LOC_Os07g38200	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	22913540	22913848	+	promoter
28	LOC_Os01g41490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	23484245	23485841	+	promoter,downstream
28	LOC_Os04g23510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	13429737	13430096	+	promoter
28	LOC_Os08g33230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	20710742	20711788	+	promoter,downstream
28	LOC_Os12g21970	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr12	12361949	12362766	+	promoter,downstream
28	LOC_Os02g16170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9192966	9196433	-	promoter,downstream
28	LOC_Os05g20510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12035110	12041824	+	promoter,downstream
28	LOC_Os04g13420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7461034	7461523	+	promoter
28	LOC_Os07g18280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10833850	10835263	-	promoter,downstream
28	LOC_Os09g09610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5181571	5182636	+	promoter
28	LOC_Os03g59820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	34054190	34055176	-	promoter,downstream
28	LOC_Os03g60840	BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed	gene	BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed	chr3	34559858	34560957	-	promoter
28	LOC_Os09g09190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4916482	4917183	-	promoter,downstream
28	LOC_Os08g17360	hypothetical protein	gene	hypothetical protein	chr8	10614028	10614386	-	promoter,downstream
28	LOC_Os07g26950	hypothetical protein	gene	hypothetical protein	chr7	15608647	15610422	+	promoter
28	LOC_Os09g01020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	61874	63908	+	promoter,downstream
28	LOC_Os08g11290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6634512	6636400	-	promoter,downstream
28	LOC_Os05g26700	hypothetical protein	gene	hypothetical protein	chr5	15447885	15448229	+	promoter,downstream
28	LOC_Os06g25100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14687031	14691038	+	promoter
28	LOC_Os05g11030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6179684	6182514	+	promoter,downstream
28	LOC_Os03g32370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18515151	18516290	-	promoter,downstream
28	LOC_Os07g33180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	19805530	19807774	+	promoter
28	LOC_Os05g08044	expressed protein	gene	expressed protein	chr5	4365478	4370538	+	promoter,downstream
28	LOC_Os02g34800	leucine-rich repeat receptor protein kinase EXS precursor, putative	gene	leucine-rich repeat receptor protein kinase EXS precursor, putative	chr2	20858661	20859470	-	promoter
28	LOC_Os07g30469	indole-3-acetate beta-glucosyltransferase, putative	gene	indole-3-acetate beta-glucosyltransferase, putative	chr7	18032090	18033550	+	promoter
28	LOC_Os12g16990	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	9724457	9724954	-	promoter,downstream
28	LOC_Os08g12199	unknown	gene	unknown	chr8	7181886	7182146	-	promoter,downstream
28	LOC_Os05g18710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10834301	10836717	+	promoter,downstream
28	LOC_Os10g39550	MYB family transcription factor, putative	gene	MYB family transcription factor, putative	chr10	21062236	21066744	-	promoter
28	LOC_Os07g31330	hypothetical protein	gene	hypothetical protein	chr7	18551006	18552110	+	promoter
28	LOC_Os06g24704	acyl-coenzyme A oxidase, putative, expressed	gene	acyl-coenzyme A oxidase, putative, expressed	chr6	14503078	14511951	-	promoter
28	LOC_Os11g19700	cycloeucalenol cycloisomerase, putative, expressed	gene	cycloeucalenol cycloisomerase, putative, expressed	chr11	11336541	11342887	+	promoter
28	LOC_Os06g11690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	6196207	6196577	+	promoter
28	LOC_Os12g43680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	27107237	27108141	+	promoter,downstream
28	LOC_Os06g31130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18090555	18091151	+	promoter
28	LOC_Os01g73880	eukaryotic translation initiation factor, putative, expressed	gene	eukaryotic translation initiation factor, putative, expressed	chr1	42810884	42814246	+	promoter,downstream
28	LOC_Os02g40370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24444311	24444550	+	promoter
28	LOC_Os03g47574	hypothetical protein	gene	hypothetical protein	chr3	26896576	26896887	-	promoter,downstream
28	LOC_Os11g29830	hypothetical protein	gene	hypothetical protein	chr11	16850349	16850594	+	promoter
28	LOC_Os06g32930	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	19180368	19181688	-	promoter
28	LOC_Os02g24470	hypothetical protein	gene	hypothetical protein	chr2	14170245	14170718	+	promoter
28	LOC_Os12g13700	hypothetical protein	gene	hypothetical protein	chr12	7721688	7721888	+	promoter,downstream
28	LOC_Os10g17590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8811552	8813252	-	promoter
28	LOC_Os08g24560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14833949	14840674	+	promoter,downstream
28	LOC_Os05g19850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11556226	11562211	+	promoter,downstream
28	LOC_Os03g35750	hypothetical protein	gene	hypothetical protein	chr3	19806102	19806458	-	promoter
28	LOC_Os08g21530	hypothetical protein	gene	hypothetical protein	chr8	12827450	12827881	-	promoter
28	LOC_Os05g20750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	12177272	12182296	-	promoter
28	LOC_Os12g09930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5258225	5259206	-	promoter,downstream
28	LOC_Os06g44580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26919260	26919709	+	promoter
28	LOC_Os04g12950	indole-3-acetate beta-glucosyltransferase, putative	gene	indole-3-acetate beta-glucosyltransferase, putative	chr4	7145531	7147242	-	promoter
28	LOC_Os05g19190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11133741	11140053	-	promoter,downstream
28	LOC_Os10g08100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4398968	4400872	+	promoter,downstream
28	LOC_Os05g33530	hypothetical protein	gene	hypothetical protein	chr5	19635283	19635702	+	promoter
28	LOC_Os04g15520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8435486	8437130	-	promoter,downstream
28	LOC_Os07g08669	expressed protein	gene	expressed protein	chr7	4466342	4467948	+	promoter
28	LOC_Os07g49130	hypothetical protein	gene	hypothetical protein	chr7	29427430	29427777	+	promoter
28	LOC_Os09g21820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13223484	13227710	+	promoter,downstream
28	LOC_Os10g14250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7740964	7742217	-	promoter,downstream
28	LOC_Os08g19100	hypothetical protein	gene	hypothetical protein	chr8	11394339	11395812	+	promoter
28	LOC_Os11g12670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	7137078	7137455	+	promoter
28	LOC_Os09g21950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13286541	13286993	+	promoter
28	LOC_Os01g54770	hypothetical protein	gene	hypothetical protein	chr1	31507598	31508993	+	promoter
28	LOC_Os11g34880	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr11	19978742	19984209	-	promoter
28	LOC_Os01g01295	expressed protein	gene	expressed protein	chr1	140936	143554	+	promoter
28	LOC_Os10g20030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	9977151	9981647	-	promoter,downstream
28	LOC_Os01g29260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16399603	16402567	+	promoter
28	LOC_Os05g31640	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	18363010	18364171	-	promoter
28	LOC_Os04g16660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9059345	9059743	+	promoter,downstream
28	LOC_Os06g47820	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr6	28940273	28942706	+	promoter
28	LOC_Os11g27010	hypothetical protein	gene	hypothetical protein	chr11	15093506	15093832	+	promoter,downstream
28	LOC_Os11g24006	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13142186	13144064	+	promoter
28	LOC_Os04g15900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8624148	8624567	-	promoter,downstream
28	LOC_Os06g39170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23253897	23257132	+	promoter
28	LOC_Os05g23490	hypothetical protein	gene	hypothetical protein	chr5	13384420	13385795	+	promoter
28	LOC_Os01g22150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	12443604	12445124	-	promoter,downstream
28	LOC_Os02g18830	ribosome biogenesis protein NEP1, putative, expressed	gene	ribosome biogenesis protein NEP1, putative, expressed	chr2	10990462	10993773	+	promoter
28	LOC_Os08g30760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18975228	18978542	-	promoter
28	LOC_Os05g23440	solute carrier family 35 member F1, putative, expressed	gene	solute carrier family 35 member F1, putative, expressed	chr5	13347871	13353374	+	promoter
28	LOC_Os01g11520	RING-H2 finger protein, putative, expressed	gene	RING-H2 finger protein, putative, expressed	chr1	6198158	6199399	-	promoter
28	LOC_Os08g23490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14220111	14222171	+	promoter,downstream
28	LOC_Os06g29970	hypothetical protein	gene	hypothetical protein	chr6	17254073	17254441	+	promoter
28	LOC_Os08g08520	hypothetical protein	gene	hypothetical protein	chr8	4907988	4908362	-	promoter,downstream
28	LOC_Os11g26030	GTPase of unknown function domain containing protein, putative, expressed	gene	GTPase of unknown function domain containing protein, putative, expressed	chr11	14420016	14426888	+	promoter
28	LOC_Os02g22820	expressed protein	gene	expressed protein	chr2	13606025	13607504	-	promoter
28	LOC_Os09g06210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2902235	2903154	+	promoter,downstream
28	LOC_Os03g13430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	7263246	7266535	+	promoter,downstream
28	LOC_Os02g27040	hypothetical protein	gene	hypothetical protein	chr2	15893855	15895179	+	promoter,downstream
28	LOC_Os05g46670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	26947916	26948353	-	promoter,downstream
28	LOC_Os04g21160	triacylglycerol lipase 1 precursor, putative	gene	triacylglycerol lipase 1 precursor, putative	chr4	11901780	11908766	-	promoter
28	LOC_Os12g35530	hypothetical protein	gene	hypothetical protein	chr12	21569403	21569621	+	promoter,downstream
28	LOC_Os05g08070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4391627	4394375	+	promoter
28	LOC_Os10g06200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3176807	3184074	-	promoter,downstream
28	LOC_Os05g19210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11149406	11152735	-	promoter
28	LOC_Os02g23823	helix-loop-helix DNA-binding domain containing protein, expressed	gene	helix-loop-helix DNA-binding domain containing protein, expressed	chr2	13753341	13761401	+	promoter,downstream
28	LOC_Os03g13120	hypothetical protein	gene	hypothetical protein	chr3	7081716	7083595	-	promoter
28	LOC_Os07g12520	zinc ion binding protein, putative, expressed	gene	zinc ion binding protein, putative, expressed	chr7	7144544	7148832	+	promoter
28	LOC_Os12g26010	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	15108914	15110887	+	promoter,downstream
28	LOC_Os05g19260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	11186994	11187335	+	promoter
28	LOC_Os02g07650	zinc-binding protein, putative, expressed	gene	zinc-binding protein, putative, expressed	chr2	3971428	3975146	+	promoter
28	LOC_Os07g10790	hypothetical protein	gene	hypothetical protein	chr7	5872342	5872886	-	promoter
28	LOC_Os07g16250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9485165	9485746	-	promoter
28	LOC_Os04g04200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1949622	1954508	+	promoter
28	LOC_Os02g28030	hypothetical protein	gene	hypothetical protein	chr2	16590788	16592851	-	promoter,downstream
28	LOC_Os06g27750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15716182	15717302	-	promoter
28	LOC_Os04g05290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2627733	2631700	+	promoter,downstream
28	LOC_Os08g12680	zinc finger domain, LSD1 subclass family protein, expressed	gene	zinc finger domain, LSD1 subclass family protein, expressed	chr8	7487658	7509522	+	promoter,downstream
28	LOC_Os02g26830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15743509	15744081	-	promoter,downstream
28	LOC_Os01g31110	CRS2-associated factor 1, chloroplast precursor, putative, expressed	gene	CRS2-associated factor 1, chloroplast precursor, putative, expressed	chr1	17011475	17015278	+	promoter,downstream
28	LOC_Os06g15530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8804222	8805571	+	promoter,downstream
28	LOC_Os05g22430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12678076	12679992	+	promoter
28	LOC_Os12g15990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9107283	9108870	-	promoter,downstream
28	LOC_Os02g06790	expressed protein	gene	expressed protein	chr2	3428545	3431073	-	promoter
28	LOC_Os11g27710	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	15478060	15479108	+	promoter,downstream
28	LOC_Os03g30880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17596502	17597385	-	promoter
28	LOC_Os08g10780	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr8	6333294	6338672	+	promoter
28	LOC_Os02g30760	expressed protein	gene	expressed protein	chr2	18321327	18321861	-	promoter,downstream
28	LOC_Os05g47700	LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed	gene	LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed	chr5	27268000	27268706	+	promoter,downstream
28	LOC_Os03g20040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	11293641	11295775	+	promoter
28	LOC_Os06g23330	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	13621967	13622431	-	promoter,downstream
28	LOC_Os04g22500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12732670	12735050	+	promoter
28	LOC_Os10g17810	hypothetical protein	gene	hypothetical protein	chr10	8937343	8940253	-	promoter,downstream
28	LOC_Os04g04410	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2093738	2096852	-	promoter
28	LOC_Os05g29080	hypothetical protein	gene	hypothetical protein	chr5	17013861	17014289	-	promoter
28	LOC_Os06g31010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18040939	18041874	-	promoter,downstream
28	LOC_Os03g46280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	26174677	26178274	+	promoter
28	LOC_Os01g28950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16213984	16218549	-	promoter,downstream
28	LOC_Os02g20260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11927142	11930326	-	promoter,downstream
28	LOC_Os12g01810	hypothetical protein	gene	hypothetical protein	chr12	487872	488606	-	promoter
28	LOC_Os02g35790	hypothetical protein	gene	hypothetical protein	chr2	21501175	21501640	+	promoter
28	LOC_Os02g01690	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	380163	383415	+	promoter
28	LOC_Os09g10530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5742398	5743614	-	promoter,downstream
28	LOC_Os05g39570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	23162615	23166312	+	promoter
28	LOC_Os10g03140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1323836	1324474	-	promoter,downstream
28	LOC_Os08g13980	glycosyl hydrolases family 16, putative, expressed	gene	glycosyl hydrolases family 16, putative, expressed	chr8	8383574	8384803	-	promoter
28	LOC_Os06g09010	hypothetical protein	gene	hypothetical protein	chr6	4535225	4536805	-	promoter
28	LOC_Os04g43490	CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed	gene	CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed	chr4	25542145	25546665	-	promoter
28	LOC_Os11g43470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25778480	25779568	-	promoter
28	LOC_Os04g31190	dynamin family protein, putative, expressed	gene	dynamin family protein, putative, expressed	chr4	18487487	18497968	-	promoter
28	LOC_Os07g16480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9655607	9661793	+	promoter,downstream
28	LOC_Os08g23280	expressed protein	gene	expressed protein	chr8	14045192	14048639	+	promoter
28	LOC_Os09g03920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2001473	2003644	-	promoter,downstream
28	LOC_Os08g25550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15535801	15536574	+	promoter
28	LOC_Os07g17580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10378893	10382906	-	promoter,downstream
28	LOC_Os04g21260	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	11980792	11984029	+	promoter,downstream
28	LOC_Os08g15080	proline rich protein 3, putative, expressed	gene	proline rich protein 3, putative, expressed	chr8	9122564	9126613	+	promoter
28	LOC_Os05g10450	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	5690200	5690727	+	promoter,downstream
28	LOC_Os02g05370	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr2	2582087	2586195	+	promoter
28	LOC_Os03g33390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19092459	19093470	-	promoter,downstream
28	LOC_Os01g22170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12456001	12462667	+	promoter,downstream
28	LOC_Os04g51200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30152476	30154813	+	promoter,downstream
28	LOC_Os12g43270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26824462	26831682	+	promoter,downstream
28	LOC_Os08g25450	hypothetical protein	gene	hypothetical protein	chr8	15488268	15488828	-	promoter,downstream
28	LOC_Os02g43070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25931303	25932544	+	promoter
28	LOC_Os06g50760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	30705867	30706325	+	promoter
28	LOC_Os08g31330	hypothetical protein	gene	hypothetical protein	chr8	19371194	19373434	-	promoter
28	LOC_Os02g18170	hypothetical protein	gene	hypothetical protein	chr2	10548893	10550861	+	promoter
28	LOC_Os04g15550	expressed protein	gene	expressed protein	chr4	8449101	8457121	+	promoter
28	LOC_Os05g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11860260	11863929	+	promoter,downstream
28	LOC_Os06g33040	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	19230191	19233812	-	promoter
28	LOC_Os05g27900	hypothetical protein	gene	hypothetical protein	chr5	16225661	16226125	+	promoter
28	LOC_Os10g09060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4918966	4922475	-	promoter,downstream
28	LOC_Os05g47820	expressed protein	gene	expressed protein	chr5	27349642	27351763	-	promoter
28	LOC_Os10g24940	expressed protein	gene	expressed protein	chr10	12763138	12772571	+	promoter
28	LOC_Os01g16630	hypothetical protein	gene	hypothetical protein	chr1	9437432	9438363	+	promoter
28	LOC_Os12g29460	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	17501162	17501961	-	promoter,downstream
28	LOC_Os04g24560	hypothetical protein	gene	hypothetical protein	chr4	14089968	14090237	-	promoter,downstream
28	LOC_Os02g25720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	15053184	15059558	+	promoter,downstream
28	LOC_Os01g20960	hypothetical protein	gene	hypothetical protein	chr1	11709876	11710157	+	promoter
28	LOC_Os02g51270	hypothetical protein	gene	hypothetical protein	chr2	31384253	31384768	+	promoter
28	LOC_Os12g22540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12719880	12720326	+	promoter,downstream
28	LOC_Os06g20600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11855464	11856327	-	promoter
28	LOC_Os01g34190	G-patch domain containing protein, expressed	gene	G-patch domain containing protein, expressed	chr1	18846925	18850770	+	promoter
28	LOC_Os11g09790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	5224406	5230618	+	promoter
28	LOC_Os06g44590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26920479	26926247	-	promoter
28	LOC_Os12g23080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13038907	13040276	-	promoter,downstream
28	LOC_Os09g03260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1566577	1569140	+	promoter,downstream
28	LOC_Os09g19480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	11660025	11660862	+	promoter
28	LOC_Os03g32200	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	18421960	18422757	+	promoter
28	LOC_Os10g17180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8558282	8559969	+	promoter
28	LOC_Os01g29300	hypothetical protein	gene	hypothetical protein	chr1	16421649	16422014	+	promoter
28	LOC_Os09g01730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	513691	514140	-	promoter,downstream
28	LOC_Os05g32020	hypothetical protein	gene	hypothetical protein	chr5	18595080	18595334	-	promoter,downstream
28	LOC_Os10g15390	ribosomal protein S7, putative, expressed	gene	ribosomal protein S7, putative, expressed	chr10	8084371	8095176	+	promoter
28	LOC_Os12g15700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8966809	8972221	-	promoter,downstream
28	LOC_Os08g08560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4939545	4942440	-	promoter,downstream
28	LOC_Os01g17130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	9844776	9847837	+	promoter
28	LOC_Os07g31910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18974886	18977188	-	promoter
28	LOC_Os04g25630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14842966	14843538	-	promoter
28	LOC_Os11g21910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12114602	12115875	+	promoter,downstream
28	LOC_Os10g23180	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr10	12019069	12027456	-	promoter,downstream
28	LOC_Os04g13880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7739832	7742054	+	promoter,downstream
28	LOC_Os09g04580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2439452	2443776	+	promoter
28	LOC_Os01g53540	hypothetical protein	gene	hypothetical protein	chr1	30746473	30746691	+	promoter
28	LOC_Os04g19670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10966002	10966544	-	promoter,downstream
28	LOC_Os05g26210	ATOFP17/OFP17, putative	gene	ATOFP17/OFP17, putative	chr5	15193519	15194232	+	promoter
28	LOC_Os06g21990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12716547	12720183	+	promoter
28	LOC_Os08g39920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	25290476	25291441	-	promoter,downstream
28	LOC_Os02g20670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12178361	12179089	-	promoter,downstream
28	LOC_Os07g45000	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr7	26843727	26849336	+	promoter
28	LOC_Os01g18190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10179676	10181380	+	promoter,downstream
28	LOC_Os01g47940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	27436891	27439231	+	promoter,downstream
28	LOC_Os06g30380	GTP binding protein, putative, expressed	gene	GTP binding protein, putative, expressed	chr6	17549092	17552473	+	promoter
28	LOC_Os06g06210	expressed protein	gene	expressed protein	chr6	2873351	2876068	+	promoter
28	LOC_Os01g19270	expressed protein	gene	expressed protein	chr1	10894578	10896772	+	promoter
28	LOC_Os06g17080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9903101	9904591	-	promoter
28	LOC_Os03g47440	hypothetical protein	gene	hypothetical protein	chr3	26808741	26809569	-	promoter
28	LOC_Os01g70750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	40951823	40954696	+	promoter,downstream
28	LOC_Os08g19550	expressed protein	gene	expressed protein	chr8	11689883	11691287	+	promoter,downstream
28	LOC_Os11g43810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25993152	25994159	+	promoter
28	LOC_Os03g23180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13387629	13389273	+	promoter,downstream
28	LOC_Os10g15370	expressed protein	gene	expressed protein	chr10	8083834	8084126	+	promoter
28	LOC_Os10g01060	protein kinase family protein, putative, expressed	gene	protein kinase family protein, putative, expressed	chr10	66119	71971	+	promoter
28	LOC_Os02g27730	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	16418891	16419697	-	promoter
28	LOC_Os12g23710	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	13446328	13447197	+	promoter
28	LOC_Os12g23420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13241933	13242708	-	promoter,downstream
28	LOC_Os07g45580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27204263	27205258	+	promoter,downstream
28	LOC_Os08g13120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7788801	7789952	-	promoter
28	LOC_Os02g48230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29525150	29525473	+	promoter
28	LOC_Os04g25610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14834346	14837535	-	promoter,downstream
28	LOC_Os02g25360	hypothetical protein	gene	hypothetical protein	chr2	14776593	14778118	-	promoter
28	LOC_Os09g08880	ATP synthase like protein, putative	gene	ATP synthase like protein, putative	chr9	4691153	4692007	-	promoter
28	LOC_Os12g15810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9019588	9020268	-	promoter,downstream
28	LOC_Os07g19480	hypothetical protein	gene	hypothetical protein	chr7	11526367	11526740	+	promoter
28	LOC_Os06g17210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9970300	9971520	-	promoter,downstream
28	LOC_Os10g06490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3335767	3338191	-	promoter
28	LOC_Os01g36430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20219422	20225795	+	promoter,downstream
28	LOC_Os08g08570	expressed protein	gene	expressed protein	chr8	4946241	4951241	+	promoter
28	LOC_Os04g47920	hypothetical protein	gene	hypothetical protein	chr4	28312923	28313198	+	promoter
28	LOC_Os06g44490	hypothetical protein	gene	hypothetical protein	chr6	26870786	26871034	-	promoter
28	LOC_Os12g22590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12744703	12747153	+	promoter,downstream
28	LOC_Os02g25470	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	14866049	14867052	-	promoter
28	LOC_Os05g19790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11539868	11540496	+	promoter,downstream
28	LOC_Os10g20020	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	9967339	9974063	+	promoter,downstream
28	LOC_Os07g26310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15122827	15123318	+	promoter,downstream
28	LOC_Os07g11840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6549671	6551596	+	promoter
28	LOC_Os10g23920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12196514	12196921	+	promoter,downstream
28	LOC_Os03g29224	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	16620223	16622428	+	promoter,downstream
28	LOC_Os07g16170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9424395	9425793	-	promoter
28	LOC_Os10g03220	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr10	1355919	1358158	+	promoter
28	LOC_Os05g23970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13743387	13747275	+	promoter
28	LOC_Os09g14320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8458044	8460424	-	promoter,downstream
28	LOC_Os09g23920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14262233	14268235	+	promoter,downstream
28	LOC_Os12g22700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12811954	12813608	-	promoter
28	LOC_Os02g14570	hydroquinone glucosyltransferase, putative, expressed	gene	hydroquinone glucosyltransferase, putative, expressed	chr2	8033811	8035456	-	promoter
28	LOC_Os10g11666	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6453751	6455653	+	promoter
28	LOC_Os05g12750	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr5	7319904	7322039	+	promoter
28	LOC_Os06g18070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10522965	10525415	+	promoter,downstream
28	LOC_Os08g01450	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr8	287778	289301	-	promoter
28	LOC_Os02g29800	hypothetical protein	gene	hypothetical protein	chr2	17726255	17726572	+	promoter
28	LOC_Os08g11080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6513622	6516422	+	promoter,downstream
28	LOC_Os07g11810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6531980	6534112	-	promoter,downstream
28	LOC_Os10g09460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5114111	5121039	-	promoter
28	LOC_Os05g13720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7599377	7600516	+	promoter,downstream
28	LOC_Os09g06620	OsFBX307 - F-box domain containing protein, expressed	gene	OsFBX307 - F-box domain containing protein, expressed	chr9	3138076	3139371	+	promoter
28	LOC_Os05g49860	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	gene	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	chr5	28549328	28550153	+	promoter
28	LOC_Os10g11230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6243746	6247446	+	promoter
28	LOC_Os09g06240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2932916	2933486	+	promoter
28	LOC_Os06g48900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29603899	29610071	+	promoter,downstream
28	LOC_Os07g40530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24284887	24285510	+	promoter,downstream
28	LOC_Os04g13290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7366572	7369131	+	promoter,downstream
28	LOC_Os10g02520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	946568	950292	-	promoter
28	LOC_Os06g48830	hypothetical protein	gene	hypothetical protein	chr6	29553260	29554030	-	promoter
28	LOC_Os05g24370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14035243	14036001	+	promoter,downstream
28	LOC_Os03g57140	GLTP domain containing protein, putative, expressed	gene	GLTP domain containing protein, putative, expressed	chr3	32574846	32577455	-	promoter
28	LOC_Os02g34440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	20633348	20634574	+	promoter
28	LOC_Os01g38058	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21324363	21325472	+	promoter,downstream
28	LOC_Os11g06268	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	2998527	3003104	+	promoter,downstream
28	LOC_Os08g20840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12499749	12501548	+	promoter,downstream
28	LOC_Os12g34500	expressed protein	gene	expressed protein	chr12	20851271	20852959	+	promoter
28	LOC_Os01g50670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29099606	29100277	+	promoter
28	LOC_Os04g21300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	12004543	12006171	+	promoter
28	LOC_Os01g06820	hcr2-0B, putative	gene	hcr2-0B, putative	chr1	3234987	3236799	+	promoter
28	LOC_Os10g16570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8194594	8195307	-	promoter,downstream
28	LOC_Os10g12780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7155274	7156077	-	promoter
28	LOC_Os02g26370	wiskott-Aldrich syndrome protein family member 2, putative, expressed	gene	wiskott-Aldrich syndrome protein family member 2, putative, expressed	chr2	15476478	15480076	-	promoter
28	LOC_Os10g06170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3153818	3160476	+	promoter
28	LOC_Os03g28960	DNA-directed RNA polymerase subunit, putative, expressed	gene	DNA-directed RNA polymerase subunit, putative, expressed	chr3	16419681	16438241	+	promoter
28	LOC_Os01g59050	cytochrome P450, putative	gene	cytochrome P450, putative	chr1	34130785	34132337	+	promoter
28	LOC_Os09g03880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1981104	1982035	+	promoter
28	LOC_Os01g60990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	35288468	35289853	+	promoter
28	LOC_Os08g27910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17011879	17013312	+	promoter,downstream
28	LOC_Os08g26160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	15912710	15913291	+	promoter,downstream
28	LOC_Os04g27530	hypothetical protein	gene	hypothetical protein	chr4	16104403	16104651	-	promoter
28	LOC_Os07g23720	B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed	gene	B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed	chr7	13383453	13385056	+	promoter
28	LOC_Os02g10330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	5428867	5431872	+	promoter
28	LOC_Os07g26850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15533237	15533719	+	promoter,downstream
28	LOC_Os01g38020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21294731	21295487	+	promoter,downstream
28	LOC_Os02g39120	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	23618665	23621930	-	promoter
28	LOC_Os09g16360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9994379	9995581	+	promoter,downstream
28	LOC_Os05g17340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9942498	9943613	+	promoter,downstream
28	LOC_Os09g06200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2898086	2899577	+	promoter,downstream
28	LOC_Os01g73850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	42788077	42788709	-	promoter,downstream
28	LOC_Os07g22320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12512171	12512974	-	promoter,downstream
28	LOC_Os04g34270	serine/threonine-protein kinase receptor precursor, putative, expressed	gene	serine/threonine-protein kinase receptor precursor, putative, expressed	chr4	20585797	20588679	+	promoter,downstream
28	LOC_Os10g23190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12029977	12035850	-	promoter
28	LOC_Os09g15630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	9535282	9538504	-	promoter,downstream
28	LOC_Os01g35530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19655428	19657016	-	promoter,downstream
28	LOC_Os11g43404	expressed protein	gene	expressed protein	chr11	25731968	25734428	+	promoter
28	LOC_Os02g34680	ZOS2-09 - C2H2 zinc finger protein, expressed	gene	ZOS2-09 - C2H2 zinc finger protein, expressed	chr2	20795085	20798606	+	promoter
28	LOC_Os12g27240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15980282	15984976	-	promoter
28	LOC_Os07g26410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15172299	15176877	-	promoter,downstream
28	LOC_Os12g35190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21365883	21366863	+	promoter,downstream
28	LOC_Os12g13930	3-oxoacyl-reductase, chloroplast precursor, putative, expressed	gene	3-oxoacyl-reductase, chloroplast precursor, putative, expressed	chr12	7913014	7916494	+	promoter
28	LOC_Os06g08750	integral membrane transporter family protein, putative, expressed	gene	integral membrane transporter family protein, putative, expressed	chr6	4378796	4382419	-	promoter
28	LOC_Os09g04570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2435804	2438580	+	promoter,downstream
28	LOC_Os08g07860	hypothetical protein	gene	hypothetical protein	chr8	4420433	4421981	-	promoter
28	LOC_Os07g22980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12966454	12966876	+	promoter,downstream
28	LOC_Os12g16870	hypothetical protein	gene	hypothetical protein	chr12	9672294	9673024	-	promoter
28	LOC_Os08g19980	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr8	11955656	11964973	-	promoter
28	LOC_Os04g11730	methyl-CpG binding domain containing protein	gene	methyl-CpG binding domain containing protein	chr4	6420247	6424731	+	promoter
28	LOC_Os06g18740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10624566	10627012	-	promoter
28	LOC_Os06g05780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	2614721	2621390	+	promoter,downstream
28	LOC_Os03g22900	SNF2 family N-terminal domain containing protein, expressed	gene	SNF2 family N-terminal domain containing protein, expressed	chr3	13235401	13246616	+	promoter
28	LOC_Os01g27289	unknown	gene	unknown	chr1	15230071	15230251	-	promoter
28	LOC_Os04g23310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13292066	13297333	-	promoter
28	LOC_Os10g10390	OsFBX376 - F-box domain containing protein	gene	OsFBX376 - F-box domain containing protein	chr10	5727274	5728248	-	promoter
28	LOC_Os12g11130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5994022	5996613	+	promoter
28	LOC_Os08g17800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10917665	10918090	+	promoter,downstream
28	LOC_Os01g12610	hypothetical protein	gene	hypothetical protein	chr1	6939383	6939772	+	promoter
28	LOC_Os06g40830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24356542	24356868	+	promoter
28	LOC_Os03g34120	hypothetical protein	gene	hypothetical protein	chr3	19438976	19439604	+	promoter,downstream
28	LOC_Os11g27720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15484094	15484381	+	promoter,downstream
28	LOC_Os10g24340	hypothetical protein	gene	hypothetical protein	chr10	12402571	12403686	+	promoter
28	LOC_Os06g03310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1257146	1261667	-	promoter,downstream
28	LOC_Os05g30060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17329691	17332331	+	promoter
28	LOC_Os05g51879	unknown	gene	unknown	chr5	29709618	29710045	-	promoter
28	LOC_Os09g03070	hypothetical protein	gene	hypothetical protein	chr9	1449327	1449779	+	promoter,downstream
28	LOC_Os04g20740	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11624951	11625436	+	promoter,downstream
28	LOC_Os01g38070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21327712	21328971	-	promoter,downstream
28	LOC_Os04g02020	hypothetical protein	gene	hypothetical protein	chr4	632298	632594	+	promoter,downstream
28	LOC_Os02g22810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13591783	13593150	+	promoter
28	LOC_Os09g34170	hypothetical protein	gene	hypothetical protein	chr9	20171841	20172152	-	promoter
28	LOC_Os10g12770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7145538	7152289	-	promoter,downstream
28	LOC_Os03g30550	RNA-binding protein-like, putative, expressed	gene	RNA-binding protein-like, putative, expressed	chr3	17433169	17437732	+	promoter
28	LOC_Os05g03670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1589410	1596077	-	promoter,downstream
28	LOC_Os04g59080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	34953914	34959889	+	promoter,downstream
28	LOC_Os05g27280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15797716	15800602	-	promoter
28	LOC_Os02g55658	hypothetical protein	gene	hypothetical protein	chr2	34078529	34078912	+	promoter,downstream
28	LOC_Os08g28319	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17277306	17279812	-	promoter,downstream
28	LOC_Os08g11630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6820049	6820522	-	promoter,downstream
28	LOC_Os01g74640	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr1	43224915	43229546	+	promoter
28	LOC_Os06g33010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19214534	19216507	+	promoter
28	LOC_Os04g26490	expressed protein	gene	expressed protein	chr4	15434071	15438691	-	promoter
28	LOC_Os04g16649	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9054763	9055521	+	promoter,downstream
28	LOC_Os12g25300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	14558680	14565849	+	promoter
28	LOC_Os11g15700	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr11	8892760	8894172	-	promoter
28	LOC_Os07g47560	hypothetical protein	gene	hypothetical protein	chr7	28442875	28443150	-	promoter
28	LOC_Os09g28260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17157640	17163352	-	promoter,downstream
28	LOC_Os11g26330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14607633	14608016	-	promoter,downstream
28	LOC_Os10g20370	expressed protein	gene	expressed protein	chr10	10170148	10170706	-	promoter
28	LOC_Os06g30090	helix-loop-helix DNA-binding domain containing protein	gene	helix-loop-helix DNA-binding domain containing protein	chr6	17348127	17349156	+	promoter,downstream
28	LOC_Os07g47630	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr7	28468080	28473190	-	promoter
28	LOC_Os12g34190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20693538	20693936	+	promoter
28	LOC_Os07g24210	hypothetical protein	gene	hypothetical protein	chr7	13769007	13769609	-	promoter
28	LOC_Os06g28080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15944716	15947917	-	promoter,downstream
28	LOC_Os05g16880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9618285	9619634	+	promoter,downstream
28	LOC_Os01g29740	expressed protein	gene	expressed protein	chr1	16658708	16663390	+	promoter,downstream
28	LOC_Os06g27790	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr6	15732747	15736720	+	promoter
28	LOC_Os05g21010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12361365	12362108	-	promoter
28	LOC_Os01g17100	hypothetical protein	gene	hypothetical protein	chr1	9830435	9830770	+	promoter,downstream
28	LOC_Os05g02360	hypothetical protein	gene	hypothetical protein	chr5	771200	771442	-	promoter
28	LOC_Os08g16520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10116352	10117673	+	promoter,downstream
28	LOC_Os11g22800	hypothetical protein	gene	hypothetical protein	chr11	12653053	12653529	-	promoter,downstream
28	LOC_Os08g19260	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	11518800	11521101	-	promoter,downstream
28	LOC_Os01g13650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	7649663	7651075	-	promoter
28	LOC_Os12g19130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11103645	11105716	+	promoter
28	LOC_Os09g16480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	10095923	10096426	+	promoter,downstream
28	LOC_Os04g42160	hypothetical protein	gene	hypothetical protein	chr4	24776783	24776989	+	promoter
28	LOC_Os10g01230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	152165	153532	+	promoter
28	LOC_Os05g35040	hypothetical protein	gene	hypothetical protein	chr5	20739906	20740230	+	promoter
28	LOC_Os05g44980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	26088132	26089866	+	promoter
28	LOC_Os01g33569	unknown	gene	unknown	chr1	18474295	18474591	-	promoter
28	LOC_Os02g55010	expressed protein	gene	expressed protein	chr2	33694545	33700466	+	promoter
28	LOC_Os07g15170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	8744391	8745104	-	promoter
28	LOC_Os05g11540	hypothetical protein	gene	hypothetical protein	chr5	6529702	6530445	-	promoter
28	LOC_Os06g28124	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr6	15967623	15973051	-	promoter
28	LOC_Os12g34144	mitochondrial ribosomal protein S12, putative	gene	mitochondrial ribosomal protein S12, putative	chr12	20658233	20658610	+	promoter
28	LOC_Os09g36310	hypothetical protein	gene	hypothetical protein	chr9	20959121	20960632	-	promoter
28	LOC_Os10g34220	TKL_IRAK_DUF26-lf.1 - DUF26 kinases have homology to DUF26 containing loci, expressed	gene	TKL_IRAK_DUF26-lf.1 - DUF26 kinases have homology to DUF26 containing loci, expressed	chr10	18186683	18191109	+	promoter
28	LOC_Os01g24540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13831305	13834399	-	promoter
28	LOC_Os07g47170	hypothetical protein	gene	hypothetical protein	chr7	28195852	28197086	-	promoter,downstream
28	LOC_Os06g28800	hypothetical protein	gene	hypothetical protein	chr6	16396166	16397754	-	promoter
28	LOC_Os07g15320	leaf senescence related protein, putative, expressed	gene	leaf senescence related protein, putative, expressed	chr7	8827931	8830125	+	promoter
28	LOC_Os08g18190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	11151066	11152566	+	promoter,downstream
28	LOC_Os01g34600	hypothetical protein	gene	hypothetical protein	chr1	19077039	19077575	-	promoter
28	LOC_Os10g24880	hypothetical protein	gene	hypothetical protein	chr10	12718959	12719498	-	promoter
28	LOC_Os10g08410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4585680	4587404	+	promoter,downstream
28	LOC_Os07g24498	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13946735	13947007	+	promoter
28	LOC_Os02g07400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3821687	3824174	-	promoter
28	LOC_Os07g23100	hypothetical protein	gene	hypothetical protein	chr7	13023658	13024350	-	promoter
28	LOC_Os06g35790	hypothetical protein	gene	hypothetical protein	chr6	20884780	20885037	+	promoter
28	LOC_Os04g19620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10918651	10925943	-	promoter
28	LOC_Os08g08205	expressed protein	gene	expressed protein	chr8	4684261	4686197	+	promoter
28	LOC_Os04g13950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7789275	7790384	+	promoter,downstream
28	LOC_Os07g18420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10900537	10902567	-	promoter,downstream
28	LOC_Os05g18080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10399854	10401167	+	promoter,downstream
28	LOC_Os10g22510	MLA1, putative, expressed	gene	MLA1, putative, expressed	chr10	11591415	11595422	+	promoter
28	LOC_Os02g45810	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	27900420	27903520	-	promoter
28	LOC_Os09g04500	hypothetical protein	gene	hypothetical protein	chr9	2393815	2394090	+	promoter
28	LOC_Os02g39320	hypothetical protein	gene	hypothetical protein	chr2	23735968	23737061	-	promoter
28	LOC_Os03g03070	transcription factor, putative, expressed	gene	transcription factor, putative, expressed	chr3	1268854	1270781	-	promoter
28	LOC_Os03g41280	expressed protein	gene	expressed protein	chr3	22946030	22949069	+	promoter
28	LOC_Os01g68230	expressed protein	gene	expressed protein	chr1	39653591	39656943	-	promoter
28	LOC_Os05g19720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11500063	11501990	-	promoter,downstream
28	LOC_Os05g17180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9840437	9843588	+	promoter
28	LOC_Os02g35130	AIG1, putative, expressed	gene	AIG1, putative, expressed	chr2	21076774	21082545	+	promoter
28	LOC_Os09g19610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11723396	11726173	+	promoter
28	LOC_Os11g37460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	21649853	21653182	-	promoter
28	LOC_Os01g34180	hypothetical protein	gene	hypothetical protein	chr1	18840337	18840540	-	promoter,downstream
28	LOC_Os08g19000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11338904	11341597	-	promoter
28	LOC_Os12g39070	TATA-binding protein, putative, expressed	gene	TATA-binding protein, putative, expressed	chr12	23997666	24002140	+	promoter
28	LOC_Os07g27550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16097583	16099470	+	promoter
28	LOC_Os07g17870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10575630	10576223	+	promoter,downstream
28	LOC_Os01g02550	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr1	838809	841757	-	promoter
28	LOC_Os04g08300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4429228	4429443	+	promoter
28	LOC_Os11g30870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	17499141	17500863	-	promoter,downstream
28	LOC_Os04g15999	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8683225	8683983	-	promoter,downstream
28	LOC_Os01g42710	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	24291493	24298653	+	promoter
28	LOC_Os06g07679	unknown	gene	unknown	chr6	3714109	3714314	-	promoter
28	LOC_Os11g10270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	5573721	5574467	-	promoter
28	LOC_Os12g04840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2078325	2083611	-	promoter
28	LOC_Os10g05340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	2631632	2633023	-	promoter
28	LOC_Os07g12440	hypothetical protein	gene	hypothetical protein	chr7	7094530	7094821	-	promoter
28	LOC_Os08g01100	HMG1/2, putative, expressed	gene	HMG1/2, putative, expressed	chr8	70343	71715	-	promoter,downstream
28	LOC_Os04g04020	protein transport protein Sec24-like, putative, expressed	gene	protein transport protein Sec24-like, putative, expressed	chr4	1853511	1860834	+	promoter
28	LOC_Os02g17810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10298465	10301397	+	promoter,downstream
28	LOC_Os12g01130	hypothetical protein	gene	hypothetical protein	chr12	69546	70241	+	promoter
28	LOC_Os08g23400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14140381	14144832	+	promoter,downstream
28	LOC_Os10g38760	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	20571535	20571990	-	promoter
28	LOC_Os05g25380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	14684661	14686421	+	promoter
28	LOC_Os09g08030	nodulin MtN3 family protein, putative	gene	nodulin MtN3 family protein, putative	chr9	4134752	4135547	+	promoter
28	LOC_Os06g23710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13853886	13859640	-	promoter
28	LOC_Os09g13220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7614446	7614865	-	promoter,downstream
28	LOC_Os06g14860	hypothetical protein	gene	hypothetical protein	chr6	8446689	8448279	-	promoter
28	LOC_Os09g24790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14762110	14765106	-	promoter
28	LOC_Os07g02319	unknown	gene	unknown	chr7	777719	778000	+	promoter
28	LOC_Os06g48070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29085085	29088671	+	promoter,downstream
28	LOC_Os01g26150	hypothetical protein	gene	hypothetical protein	chr1	14806769	14807449	+	promoter
28	LOC_Os10g29040	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	15061251	15064392	+	promoter
28	LOC_Os05g18340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10558736	10564645	+	promoter,downstream
28	LOC_Os05g25520	hypothetical protein	gene	hypothetical protein	chr5	14775399	14775752	-	promoter
28	LOC_Os01g29600	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	16587510	16588136	-	promoter
28	LOC_Os08g41150	MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	gene	MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	chr8	25994906	25995985	-	promoter
28	LOC_Os10g10780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	5974107	5977438	-	promoter
28	LOC_Os01g28680	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr1	16045623	16055242	+	promoter
28	LOC_Os07g18330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10858013	10859005	+	promoter,downstream
28	LOC_Os09g10460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5715356	5716923	-	promoter,downstream
28	LOC_Os11g36050	prefoldin subunit, putative, expressed	gene	prefoldin subunit, putative, expressed	chr11	20719396	20721616	+	promoter
28	LOC_Os02g17120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9806920	9807201	-	promoter
28	LOC_Os04g55910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	33104013	33104627	-	promoter,downstream
28	LOC_Os07g40770	myosin heavy chain-related, putative, expressed	gene	myosin heavy chain-related, putative, expressed	chr7	24428193	24432542	-	promoter
28	LOC_Os09g03370	MIM, putative, expressed	gene	MIM, putative, expressed	chr9	1635020	1637968	+	promoter
28	LOC_Os05g40340	hypothetical protein	gene	hypothetical protein	chr5	23642526	23643244	-	promoter
28	LOC_Os02g22260	fruit protein PKIWI502, putative, expressed	gene	fruit protein PKIWI502, putative, expressed	chr2	13280845	13292529	+	promoter,downstream
28	LOC_Os10g16419	unknown	gene	unknown	chr10	8115725	8117387	+	promoter
28	LOC_Os06g42950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25804943	25805639	-	promoter,downstream
28	LOC_Os10g35360	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	18827141	18827563	-	promoter
28	LOC_Os05g07350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	3911990	3918713	-	promoter,downstream
28	LOC_Os08g34680	glycosyltransferase, putative	gene	glycosyltransferase, putative	chr8	21781452	21781736	-	promoter
28	LOC_Os02g01630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	361447	361899	+	promoter,downstream
28	LOC_Os05g17640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10153383	10156549	+	promoter
28	LOC_Os04g04300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2012174	2013328	+	promoter,downstream
28	LOC_Os01g69040	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr1	40114864	40120071	+	promoter
28	LOC_Os07g15690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9116122	9118954	+	promoter,downstream
28	LOC_Os11g07900	hypothetical protein	gene	hypothetical protein	chr11	4067836	4070066	-	promoter
28	LOC_Os04g21705	PB1 domain containing protein	gene	PB1 domain containing protein	chr4	12266084	12267415	-	promoter
28	LOC_Os05g26280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15229825	15230409	-	promoter,downstream
28	LOC_Os09g04924	expressed protein	gene	expressed protein	chr9	2639763	2642481	-	promoter,downstream
28	LOC_Os04g27094	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15866995	15868880	-	promoter,downstream
28	LOC_Os05g29829	hypothetical protein	gene	hypothetical protein	chr5	17206712	17206921	+	promoter
28	LOC_Os02g41540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24905642	24906139	+	promoter
28	LOC_Os02g18800	hypothetical protein	gene	hypothetical protein	chr2	10959461	10960432	+	promoter
28	LOC_Os07g19030	tic22-like family domain containing protein, expressed	gene	tic22-like family domain containing protein, expressed	chr7	11267900	11272498	+	promoter
28	LOC_Os07g22930	starch synthase, putative, expressed	gene	starch synthase, putative, expressed	chr7	12915284	12923332	-	promoter
28	LOC_Os11g26309	unknown	gene	unknown	chr11	14601131	14601378	+	promoter
28	LOC_Os06g15540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8809724	8811889	-	promoter
28	LOC_Os10g33500	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	17580874	17589897	+	promoter
28	LOC_Os06g38100	S-locus-like receptor protein kinase, putative	gene	S-locus-like receptor protein kinase, putative	chr6	22535603	22537238	+	promoter
28	LOC_Os09g21650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13112121	13113376	+	promoter
28	LOC_Os07g30350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17960189	17963522	+	promoter
28	LOC_Os05g28690	expressed protein	gene	expressed protein	chr5	16769767	16779644	+	promoter
28	LOC_Os04g05280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	2625478	2625918	-	promoter,downstream
28	LOC_Os06g30800	hypothetical protein	gene	hypothetical protein	chr6	17865362	17866516	-	promoter
28	LOC_Os10g24370	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr10	12409354	12416208	-	promoter,downstream
28	LOC_Os01g41630	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed	gene	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed	chr1	23568735	23575500	+	promoter
28	LOC_Os04g03640	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	1601241	1604558	-	promoter
28	LOC_Os10g20000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9961196	9964328	+	promoter
28	LOC_Os03g16560	hypothetical protein	gene	hypothetical protein	chr3	9130047	9130490	-	promoter
28	LOC_Os08g13570	exo70 exocyst complex subunit family protein, putative, expressed	gene	exo70 exocyst complex subunit family protein, putative, expressed	chr8	8060316	8062495	+	promoter
28	LOC_Os11g44060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26154872	26157970	-	promoter
28	LOC_Os09g19880	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	11895013	11901545	+	promoter
28	LOC_Os04g13200	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7292607	7293002	+	promoter
28	LOC_Os12g31590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18982200	18985896	-	promoter,downstream
28	LOC_Os05g37239	unknown	gene	unknown	chr5	21717240	21717761	-	promoter
28	LOC_Os06g32480	hypothetical protein	gene	hypothetical protein	chr6	18883969	18884330	+	promoter,downstream
28	LOC_Os01g47820	S-locus-like receptor protein kinase, putative, expressed	gene	S-locus-like receptor protein kinase, putative, expressed	chr1	27374261	27376685	-	promoter
28	LOC_Os10g21890	glycosyl transferase family 8, putative, expressed	gene	glycosyl transferase family 8, putative, expressed	chr10	11179697	11184409	+	promoter
28	LOC_Os12g18040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10367248	10369620	-	promoter,downstream
28	LOC_Os07g12850	TKL_IRAK_DUF26-lh.7 - DUF26 kinases have homology to DUF26 containing loci	gene	TKL_IRAK_DUF26-lh.7 - DUF26 kinases have homology to DUF26 containing loci	chr7	7362546	7369098	+	promoter
28	LOC_Os04g21230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11959620	11961275	-	promoter,downstream
28	LOC_Os04g12790	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7070338	7070784	+	promoter,downstream
28	LOC_Os04g04820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2316721	2317836	+	promoter
28	LOC_Os07g06230	hypothetical protein	gene	hypothetical protein	chr7	3030411	3030706	-	promoter,downstream
28	LOC_Os11g03840	D-mannose binding lectin family protein, expressed	gene	D-mannose binding lectin family protein, expressed	chr11	1521024	1523817	-	promoter
28	LOC_Os03g33670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19256531	19258352	+	promoter
28	LOC_Os03g46090	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	gene	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	chr3	26062166	26067058	+	promoter
28	LOC_Os06g31250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18174979	18180720	-	promoter
28	LOC_Os05g37760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22042233	22046202	-	promoter
28	LOC_Os06g20520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11790750	11791628	+	promoter,downstream
28	LOC_Os02g43519	expressed protein	gene	expressed protein	chr2	26256778	26259955	+	promoter
28	LOC_Os01g05020	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	2360799	2362814	-	promoter,downstream
28	LOC_Os10g12320	hypothetical protein	gene	hypothetical protein	chr10	6872925	6873263	+	promoter
28	LOC_Os01g31930	hypothetical protein	gene	hypothetical protein	chr1	17486891	17487519	+	promoter
28	LOC_Os03g46134	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	26087870	26090195	-	promoter
28	LOC_Os08g24050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14540731	14541875	+	promoter
28	LOC_Os10g09320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5057150	5057650	+	promoter,downstream
28	LOC_Os10g16930	hypothetical protein	gene	hypothetical protein	chr10	8391490	8393461	+	promoter
28	LOC_Os10g16620	hypothetical protein	gene	hypothetical protein	chr10	8215794	8216330	+	promoter,downstream
28	LOC_Os02g28920	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	17122169	17124067	-	promoter,downstream
28	LOC_Os03g29170	sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed	gene	sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed	chr3	16570589	16576479	+	promoter
28	LOC_Os02g22250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13265883	13267482	-	promoter,downstream
28	LOC_Os07g25880	hypothetical protein	gene	hypothetical protein	chr7	14861452	14862363	+	promoter
28	LOC_Os03g51290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	29341289	29344986	+	promoter
28	LOC_Os07g27910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	16281733	16282248	+	promoter,downstream
28	LOC_Os04g31960	thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein	gene	thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein	chr4	18970119	18972108	-	promoter
28	LOC_Os01g22280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12527847	12529895	+	promoter,downstream
28	LOC_Os06g17629	hypothetical protein	gene	hypothetical protein	chr6	10238733	10239221	-	promoter,downstream
28	LOC_Os09g40030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22976301	22979908	+	promoter
28	LOC_Os06g03460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1320688	1321896	+	promoter
28	LOC_Os10g32780	RING zinc finger ankyrin protein, putative	gene	RING zinc finger ankyrin protein, putative	chr10	17095513	17095922	+	promoter
28	LOC_Os04g43940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	25865928	25867354	+	promoter
28	LOC_Os05g22540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12742328	12745443	-	promoter,downstream
28	LOC_Os07g22260	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12477558	12477854	+	promoter,downstream
28	LOC_Os12g35420	hypothetical protein	gene	hypothetical protein	chr12	21508424	21508750	-	promoter,downstream
28	LOC_Os08g37174	unknown	gene	unknown	chr8	23482659	23483300	+	promoter
28	LOC_Os06g15090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8551913	8554309	-	promoter
28	LOC_Os03g33200	hypothetical protein	gene	hypothetical protein	chr3	18988940	18989650	-	promoter,downstream
28	LOC_Os04g14860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8350371	8353794	-	promoter
28	LOC_Os10g17670	hypothetical protein	gene	hypothetical protein	chr10	8864110	8865701	-	promoter
28	LOC_Os07g45740	hypothetical protein	gene	hypothetical protein	chr7	27306935	27308533	+	promoter,downstream
28	LOC_Os05g43350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25146249	25151072	-	promoter,downstream
28	LOC_Os08g30610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18861226	18864551	-	promoter
28	LOC_Os07g22340	hypothetical protein	gene	hypothetical protein	chr7	12540166	12540377	+	promoter,downstream
28	LOC_Os02g19970	aminotransferase, classes I and II, domain containing protein, expressed	gene	aminotransferase, classes I and II, domain containing protein, expressed	chr2	11749116	11753782	+	promoter
28	LOC_Os07g13070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7491815	7494422	+	promoter
28	LOC_Os01g23480	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	13185804	13186271	-	promoter,downstream
28	LOC_Os12g37240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22808803	22812500	+	promoter
28	LOC_Os05g52028	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	29810061	29810633	-	promoter,downstream
28	LOC_Os01g47880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	27404222	27405772	-	promoter
28	LOC_Os03g57190	TCP family transcription factor, putative, expressed	gene	TCP family transcription factor, putative, expressed	chr3	32606931	32611170	+	promoter
28	LOC_Os05g33450	xanthine/uracil/vitamin C permease, putative	gene	xanthine/uracil/vitamin C permease, putative	chr5	19591339	19591848	+	promoter,downstream
28	LOC_Os12g18610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	10748546	10749208	-	promoter
28	LOC_Os09g04540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2418520	2421444	-	promoter,downstream
28	LOC_Os08g20610	pentatricopeptide containing protein, putative	gene	pentatricopeptide containing protein, putative	chr8	12380719	12382926	+	promoter
28	LOC_Os06g38230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22622060	22624605	-	promoter,downstream
28	LOC_Os07g22840	anaphase-promoting complex subunit 11, putative	gene	anaphase-promoting complex subunit 11, putative	chr7	12880699	12882440	+	promoter
28	LOC_Os04g27810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16260087	16260548	+	promoter,downstream
28	LOC_Os06g48360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29241626	29242393	+	promoter,downstream
28	LOC_Os06g03380	expressed protein	gene	expressed protein	chr6	1288048	1290622	+	promoter
28	LOC_Os02g01670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	372104	376669	-	promoter,downstream
28	LOC_Os09g04910	hypothetical protein	gene	hypothetical protein	chr9	2629330	2629644	-	promoter,downstream
28	LOC_Os05g51870	ligA, putative	gene	ligA, putative	chr5	29708802	29709251	+	promoter
28	LOC_Os08g04290	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr8	2094647	2099607	+	promoter
28	LOC_Os12g19570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11389294	11390320	-	promoter
28	LOC_Os07g31640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18784106	18787328	-	promoter
28	LOC_Os04g39390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23261003	23264004	+	promoter
28	LOC_Os11g17180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9549882	9552359	-	promoter
28	LOC_Os04g11290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6160675	6162576	+	promoter,downstream
28	LOC_Os01g33820	hypothetical protein	gene	hypothetical protein	chr1	18616404	18616852	+	promoter
28	LOC_Os03g25110	expressed protein	gene	expressed protein	chr3	14335810	14340397	+	promoter
28	LOC_Os01g14750	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	8241626	8241898	-	promoter
28	LOC_Os08g27790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16924799	16927809	+	promoter
28	LOC_Os04g27560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16135195	16139175	-	promoter,downstream
28	LOC_Os01g71910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	41664373	41668055	+	promoter
28	LOC_Os06g08420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	4112423	4115755	-	promoter
28	LOC_Os10g13730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	7473389	7475414	-	promoter,downstream
28	LOC_Os02g26680	hypothetical protein	gene	hypothetical protein	chr2	15662333	15662665	-	promoter,downstream
28	LOC_Os01g27210	glutathione S-transferase, putative, expressed	gene	glutathione S-transferase, putative, expressed	chr1	15169319	15170834	-	promoter
28	LOC_Os09g19820	aminopeptidase, putative, expressed	gene	aminopeptidase, putative, expressed	chr9	11861270	11865458	+	promoter
28	LOC_Os05g16610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9417296	9418495	-	promoter,downstream
28	LOC_Os08g28780	SKP1, putative	gene	SKP1, putative	chr8	17601848	17602407	+	promoter
28	LOC_Os12g34830	hypothetical protein	gene	hypothetical protein	chr12	21170282	21170485	+	promoter
28	LOC_Os04g18420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10164157	10166717	-	promoter
28	LOC_Os12g19000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11023499	11029196	+	promoter
28	LOC_Os11g23030	hypothetical protein	gene	hypothetical protein	chr11	12778046	12778730	-	promoter
28	LOC_Os01g50810	invertase/pectin methylesterase inhibitor family protein, putative, expressed	gene	invertase/pectin methylesterase inhibitor family protein, putative, expressed	chr1	29182674	29183927	-	promoter
28	LOC_Os08g23980	hypothetical protein	gene	hypothetical protein	chr8	14507246	14507566	+	promoter,downstream
28	LOC_Os03g36030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19979830	19984373	+	promoter
28	LOC_Os06g37970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	22460740	22461630	-	promoter
28	LOC_Os01g20060	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	11388429	11388896	+	promoter,downstream
28	LOC_Os09g40018	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22962628	22965782	+	promoter
28	LOC_Os08g20700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12439753	12440886	-	promoter,downstream
28	LOC_Os11g40370	protein kinase family protein, putative, expressed	gene	protein kinase family protein, putative, expressed	chr11	23600920	23604178	-	promoter
28	LOC_Os09g26760	DNA repair metallo-beta-lactamase family protein	gene	DNA repair metallo-beta-lactamase family protein	chr9	16251172	16256557	-	promoter
28	LOC_Os04g12800	expressed protein	gene	expressed protein	chr4	7072466	7072935	-	promoter
28	LOC_Os08g21830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13060825	13061427	+	promoter,downstream
28	LOC_Os06g45620	hypothetical protein	gene	hypothetical protein	chr6	27617994	27620708	-	promoter
28	LOC_Os06g24290	SCP-like extracellular protein	gene	SCP-like extracellular protein	chr6	14209394	14209921	+	promoter
28	LOC_Os05g08280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4516668	4519029	-	promoter,downstream
28	LOC_Os05g13840	hypothetical protein	gene	hypothetical protein	chr5	7689577	7690312	-	promoter
28	LOC_Os06g35420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20644220	20645832	+	promoter
28	LOC_Os03g33750	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr3	19292523	19295000	+	promoter,downstream
28	LOC_Os10g16950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8411507	8417888	-	promoter,downstream
28	LOC_Os07g43640	ribonuclease T2 family domain containing protein	gene	ribonuclease T2 family domain containing protein	chr7	26124856	26127310	+	promoter
28	LOC_Os07g20230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11668363	11669379	-	promoter,downstream
28	LOC_Os10g11012	hypothetical protein	gene	hypothetical protein	chr10	6109679	6113823	-	promoter
28	LOC_Os04g14390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	8049581	8049814	-	promoter,downstream
28	LOC_Os12g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12818843	12819508	-	promoter,downstream
28	LOC_Os10g42480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	22829071	22832394	-	promoter
28	LOC_Os02g20844	expressed protein	gene	expressed protein	chr2	12320247	12324027	+	promoter
28	LOC_Os08g27070	co-chaperone protein SBA1, putative, expressed	gene	co-chaperone protein SBA1, putative, expressed	chr8	16535594	16539985	-	promoter
28	LOC_Os12g06700	hypothetical protein	gene	hypothetical protein	chr12	3261100	3261549	+	promoter,downstream
28	LOC_Os08g10920	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	6431231	6433163	-	promoter
28	LOC_Os06g37120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21920491	21921894	+	promoter,downstream
28	LOC_Os01g40920	hypothetical protein	gene	hypothetical protein	chr1	23144144	23146576	+	promoter,downstream
28	LOC_Os07g30050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17722616	17725673	+	promoter,downstream
28	LOC_Os04g15580	serine/threonine-protein kinase receptor precursor, putative, expressed	gene	serine/threonine-protein kinase receptor precursor, putative, expressed	chr4	8468098	8471415	-	promoter
28	LOC_Os10g24280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12367673	12368188	-	promoter,downstream
28	LOC_Os01g27459	unknown	gene	unknown	chr1	15334084	15334263	+	promoter
28	LOC_Os11g32340	hypothetical protein	gene	hypothetical protein	chr11	18637922	18638457	-	promoter
28	LOC_Os12g28740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16974935	16978635	+	promoter
28	LOC_Os06g42550	hypothetical protein	gene	hypothetical protein	chr6	25586556	25586792	-	promoter
28	LOC_Os01g15650	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	8804806	8807517	-	promoter
28	LOC_Os04g11350	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	6189134	6194150	-	promoter
28	LOC_Os12g32000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19255858	19258072	-	promoter
28	LOC_Os06g25340	hypothetical protein	gene	hypothetical protein	chr6	14840928	14843972	-	promoter
28	LOC_Os02g32180	hypothetical protein	gene	hypothetical protein	chr2	19002248	19006431	+	promoter
28	LOC_Os05g15040	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr5	8526331	8535139	-	promoter
28	LOC_Os09g21790	hypothetical protein	gene	hypothetical protein	chr9	13193833	13194558	-	promoter
28	LOC_Os06g37610	Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed	gene	Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed	chr6	22265803	22270152	+	promoter
28	LOC_Os12g17120	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	9796967	9797893	+	promoter
28	LOC_Os05g18490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10685313	10691986	+	promoter,downstream
28	LOC_Os10g28920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15002052	15002645	+	promoter,downstream
28	LOC_Os11g11310	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	6271200	6271535	-	promoter,downstream
28	LOC_Os09g06380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3001399	3002122	+	promoter,downstream
28	LOC_Os05g17910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10296657	10301301	-	promoter,downstream
28	LOC_Os05g10700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5887090	5892278	+	promoter
28	LOC_Os05g10470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5694633	5695969	-	promoter
28	LOC_Os06g15140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8582517	8583044	+	promoter
28	LOC_Os01g38550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	21650870	21654093	-	promoter
28	LOC_Os10g08430	hypothetical protein	gene	hypothetical protein	chr10	4597569	4598030	-	promoter
28	LOC_Os07g34670	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr7	20782038	20783723	+	promoter
28	LOC_Os08g12120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7134088	7138889	+	promoter,downstream
28	LOC_Os01g37180	hypothetical protein	gene	hypothetical protein	chr1	20765059	20765412	-	promoter
28	LOC_Os10g23870	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12168279	12170237	-	promoter,downstream
28	LOC_Os07g15630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9061932	9065220	-	promoter
28	LOC_Os10g27080	hypothetical protein	gene	hypothetical protein	chr10	14200274	14201391	+	promoter
28	LOC_Os11g23830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13022210	13024912	-	promoter,downstream
28	LOC_Os03g34070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19419943	19422410	+	promoter,downstream
28	LOC_Os05g03650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1576175	1582515	+	promoter
28	LOC_Os01g25080	hypothetical protein	gene	hypothetical protein	chr1	14151947	14152270	+	promoter,downstream
28	LOC_Os01g14460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8096513	8097373	-	promoter,downstream
28	LOC_Os02g21110	OsFBK6 - F-box domain and kelch repeat containing protein, expressed	gene	OsFBK6 - F-box domain and kelch repeat containing protein, expressed	chr2	12528754	12533299	-	promoter
28	LOC_Os02g48400	expressed protein	gene	expressed protein	chr2	29629988	29633482	+	promoter
28	LOC_Os11g27220	hypothetical protein	gene	hypothetical protein	chr11	15202026	15203205	+	promoter
28	LOC_Os05g03950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	1773942	1777642	+	promoter
28	LOC_Os06g15500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8794065	8796374	+	promoter
28	LOC_Os03g24710	terpene synthase, N-terminal domain containing protein	gene	terpene synthase, N-terminal domain containing protein	chr3	14085985	14087070	+	promoter
28	LOC_Os10g04050	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr10	1857210	1865049	+	promoter
28	LOC_Os01g29540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16558702	16559367	-	promoter,downstream
28	LOC_Os08g17020	hypothetical protein	gene	hypothetical protein	chr8	10424437	10427001	-	promoter
28	LOC_Os06g18030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10497204	10501080	+	promoter,downstream
28	LOC_Os12g08110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	4131874	4135599	+	promoter
28	LOC_Os02g17190	MYB family transcription factor, putative, expressed	gene	MYB family transcription factor, putative, expressed	chr2	9848197	9852415	+	promoter
28	LOC_Os04g53990	ethylene-responsive protein related, putative, expressed	gene	ethylene-responsive protein related, putative, expressed	chr4	31981617	31984497	+	promoter
28	LOC_Os09g16880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10309955	10313081	+	promoter,downstream
28	LOC_Os01g22609	unknown	gene	unknown	chr1	12712577	12712917	-	promoter
28	LOC_Os04g01050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	39552	40234	+	promoter
28	LOC_Os08g40810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25811960	25812895	-	promoter,downstream
28	LOC_Os01g29290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16417106	16418603	+	promoter,downstream
28	LOC_Os10g41600	hypothetical protein	gene	hypothetical protein	chr10	22328972	22330229	+	promoter
28	LOC_Os11g27040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15105717	15106943	+	promoter
28	LOC_Os04g35720	hypothetical protein	gene	hypothetical protein	chr4	21595560	21596943	-	promoter
28	LOC_Os06g33590	hypothetical protein	gene	hypothetical protein	chr6	19556624	19556833	-	promoter
28	LOC_Os08g22354	polyadenylate-binding protein, putative, expressed	gene	polyadenylate-binding protein, putative, expressed	chr8	13469297	13476757	+	promoter
28	LOC_Os06g40310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23996654	23998642	+	promoter
28	LOC_Os07g22110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12356122	12358655	+	promoter
28	LOC_Os11g37600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	21729204	21732069	+	promoter
28	LOC_Os01g43350	protein kinase family protein, putative, expressed	gene	protein kinase family protein, putative, expressed	chr1	24783398	24787205	-	promoter
28	LOC_Os12g17970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10325539	10326192	-	promoter
28	LOC_Os02g20480	resistance protein candidate, putative	gene	resistance protein candidate, putative	chr2	12079373	12079954	-	promoter,downstream
28	LOC_Os01g23160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13017775	13020189	+	promoter,downstream
28	LOC_Os06g14960	hypothetical protein	gene	hypothetical protein	chr6	8488825	8489043	-	promoter
28	LOC_Os04g29040	hypothetical protein	gene	hypothetical protein	chr4	17035453	17035919	+	promoter
28	LOC_Os09g03230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1557404	1559533	+	promoter,downstream
28	LOC_Os10g09030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4903290	4905292	-	promoter,downstream
28	LOC_Os01g28440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15928237	15931320	-	promoter
28	LOC_Os07g18390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10892457	10894686	+	promoter,downstream
28	LOC_Os07g09460	expressed protein	gene	expressed protein	chr7	4985549	4997442	+	promoter
28	LOC_Os02g46550	hypothetical protein	gene	hypothetical protein	chr2	28382185	28382508	+	promoter
28	LOC_Os04g43960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25872661	25873146	-	promoter,downstream
28	LOC_Os11g18750	hypothetical protein	gene	hypothetical protein	chr11	10632001	10632870	+	promoter
28	LOC_Os11g23110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12838795	12839814	+	promoter,downstream
28	LOC_Os09g19300	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	11549879	11552815	-	promoter
28	LOC_Os04g27820	hypothetical protein	gene	hypothetical protein	chr4	16264448	16266224	+	promoter
28	LOC_Os08g33470	hypothetical protein	gene	hypothetical protein	chr8	20876190	20876546	+	promoter,downstream
28	LOC_Os04g16090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	8723554	8724236	-	promoter,downstream
28	LOC_Os01g65670	amino acid transporter, putative, expressed	gene	amino acid transporter, putative, expressed	chr1	38132388	38136727	-	promoter
28	LOC_Os09g04470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2380994	2381599	-	promoter
28	LOC_Os07g37060	hypothetical protein	gene	hypothetical protein	chr7	22202000	22202605	-	promoter
28	LOC_Os12g24700	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14151089	14151786	+	promoter
28	LOC_Os01g36380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20187010	20187648	-	promoter
28	LOC_Os04g19050	hypothetical protein	gene	hypothetical protein	chr4	10568464	10568793	+	promoter
28	LOC_Os08g05850	LSM domain containing protein, expressed	gene	LSM domain containing protein, expressed	chr8	3145491	3149141	+	promoter
28	LOC_Os02g45030	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr2	27283475	27284062	+	promoter,downstream
28	LOC_Os07g33200	expressed protein	gene	expressed protein	chr7	19826237	19832202	+	promoter
28	LOC_Os09g03270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1569879	1572892	-	promoter
28	LOC_Os10g10119	unknown	gene	unknown	chr10	5550695	5551018	+	promoter
28	LOC_Os10g19020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9613416	9616748	-	promoter
28	LOC_Os02g20770	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	12268252	12268903	-	promoter
28	LOC_Os02g24030	hypothetical protein	gene	hypothetical protein	chr2	13921777	13922528	+	promoter
28	LOC_Os08g26150	hypothetical protein	gene	hypothetical protein	chr8	15908518	15908969	-	promoter
28	LOC_Os12g17030	PROLM30 - Prolamin precursor, expressed	gene	PROLM30 - Prolamin precursor, expressed	chr12	9738176	9738615	+	promoter,downstream
28	LOC_Os07g31240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18489794	18494176	-	promoter
28	LOC_Os11g25500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14058962	14061079	-	promoter
28	LOC_Os12g19210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	11148547	11149332	+	promoter
28	LOC_Os02g45560	hypothetical protein	gene	hypothetical protein	chr2	27717144	27717632	-	promoter
28	LOC_Os01g62730	hypothetical protein	gene	hypothetical protein	chr1	36318964	36319173	+	promoter
28	LOC_Os10g09220	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	4996441	5003102	-	promoter,downstream
28	LOC_Os08g12490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7385409	7387613	+	promoter,downstream
28	LOC_Os11g26270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14576003	14577118	+	promoter,downstream
28	LOC_Os05g06410	hypothetical protein	gene	hypothetical protein	chr5	3289202	3289759	+	promoter
28	LOC_Os11g44540	hypothetical protein	gene	hypothetical protein	chr11	26460846	26461497	+	promoter
28	LOC_Os10g24420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12449721	12456393	+	promoter,downstream
28	LOC_Os07g49380	PWWP domain containing protein, expressed	gene	PWWP domain containing protein, expressed	chr7	29575595	29578597	+	promoter
28	LOC_Os10g03470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1487876	1491208	-	promoter
28	LOC_Os08g24240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14632176	14633417	+	promoter,downstream
28	LOC_Os01g29270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16406744	16412342	-	promoter
28	LOC_Os04g38100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22493058	22493723	-	promoter,downstream
28	LOC_Os02g21740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12919172	12921972	+	promoter
28	LOC_Os06g42720	amino acid transporter, putative, expressed	gene	amino acid transporter, putative, expressed	chr6	25689100	25692911	+	promoter
28	LOC_Os08g33370	14-3-3 protein, putative, expressed	gene	14-3-3 protein, putative, expressed	chr8	20809790	20812919	-	promoter
28	LOC_Os04g08720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4725525	4726334	+	promoter
28	LOC_Os11g41200	hypothetical protein	gene	hypothetical protein	chr11	24231821	24233138	-	promoter
28	LOC_Os06g24720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14521418	14521889	-	promoter,downstream
28	LOC_Os06g03200	hypothetical protein	gene	hypothetical protein	chr6	1205454	1207952	-	promoter
28	LOC_Os08g32210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19965843	19967475	-	promoter,downstream
28	LOC_Os02g44930	HMG1/2, putative, expressed	gene	HMG1/2, putative, expressed	chr2	27219406	27221344	+	promoter
28	LOC_Os05g40840	hypothetical protein	gene	hypothetical protein	chr5	23893440	23893930	+	promoter
28	LOC_Os05g19890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11586569	11587849	-	promoter,downstream
28	LOC_Os08g19320	aberrant root formation protein 4, putative, expressed	gene	aberrant root formation protein 4, putative, expressed	chr8	11557455	11562793	-	promoter
28	LOC_Os03g26720	hypothetical protein	gene	hypothetical protein	chr3	15250131	15250670	-	promoter
28	LOC_Os09g14220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8410053	8411342	-	promoter,downstream
28	LOC_Os04g55540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32855433	32859038	-	promoter
28	LOC_Os07g17390	PsbP, putative, expressed	gene	PsbP, putative, expressed	chr7	10261054	10264884	+	promoter
28	LOC_Os01g54510	MAC/Perforin domain containing protein, putative, expressed	gene	MAC/Perforin domain containing protein, putative, expressed	chr1	31348568	31352117	+	promoter
28	LOC_Os08g07480	DNA-directed RNA polymerase subunit, putative, expressed	gene	DNA-directed RNA polymerase subunit, putative, expressed	chr8	4190608	4199968	-	promoter
28	LOC_Os10g11690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6472837	6479507	+	promoter,downstream
28	LOC_Os09g19630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11729926	11732076	-	promoter
28	LOC_Os02g28540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16880641	16882725	+	promoter,downstream
28	LOC_Os04g13874	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7735924	7737546	-	promoter,downstream
28	LOC_Os06g20470	hypothetical protein	gene	hypothetical protein	chr6	11751948	11752271	+	promoter,downstream
28	LOC_Os09g13910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8185978	8190585	-	promoter
28	LOC_Os02g50660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	30937667	30942731	-	promoter
28	LOC_Os10g27240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	14294735	14298124	+	promoter,downstream
28	LOC_Os08g04959	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2536614	2537045	+	promoter
28	LOC_Os08g11070	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	6509919	6511031	-	promoter,downstream
28	LOC_Os05g24210	hypothetical protein	gene	hypothetical protein	chr5	13946658	13947065	+	promoter
28	LOC_Os01g38260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21463068	21465300	+	promoter
28	LOC_Os01g29560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16564507	16570394	-	promoter,downstream
28	LOC_Os10g13400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7249021	7254879	-	promoter
28	LOC_Os11g44190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	26217933	26222736	+	promoter
28	LOC_Os04g05830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	2991269	2991781	-	promoter
28	LOC_Os01g23940	hypothetical protein	gene	hypothetical protein	chr1	13466964	13468733	+	promoter
28	LOC_Os11g28900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16260073	16260681	+	promoter,downstream
28	LOC_Os05g44690	hypothetical protein	gene	hypothetical protein	chr5	25924365	25925703	+	promoter,downstream
28	LOC_Os07g30200	tRNA synthetases class II domain containing protein, expressed	gene	tRNA synthetases class II domain containing protein, expressed	chr7	17837532	17844002	+	promoter
28	LOC_Os11g23170	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr11	12869782	12878463	+	promoter
28	LOC_Os01g39950	hypothetical protein	gene	hypothetical protein	chr1	22532870	22533406	+	promoter
28	LOC_Os08g14690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	8833262	8835206	+	promoter
28	LOC_Os10g38510	hypothetical protein	gene	hypothetical protein	chr10	20494154	20494719	-	promoter
28	LOC_Os06g32810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19082497	19083150	-	promoter,downstream
28	LOC_Os11g04990	expressed protein	gene	expressed protein	chr11	2141080	2143972	+	promoter,downstream
28	LOC_Os06g38460	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	22790491	22790871	-	promoter
28	LOC_Os12g14820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8474441	8477468	+	promoter
28	LOC_Os08g39710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25136141	25139446	-	promoter,downstream
28	LOC_Os03g26000	expressed protein	gene	expressed protein	chr3	14898474	14905620	+	promoter
28	LOC_Os05g35690	GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed	gene	GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed	chr5	21135542	21136433	+	promoter
28	LOC_Os07g32590	peptidase, M24 family protein, putative, expressed	gene	peptidase, M24 family protein, putative, expressed	chr7	19426907	19431241	+	promoter
28	LOC_Os09g24090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	14318607	14321875	-	promoter,downstream
28	LOC_Os03g59930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	34098267	34098725	+	promoter
28	LOC_Os05g32760	BZIP protein, putative, expressed	gene	BZIP protein, putative, expressed	chr5	19115850	19121223	+	promoter
28	LOC_Os05g08320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4543944	4545192	-	promoter
28	LOC_Os07g15300	hypothetical protein	gene	hypothetical protein	chr7	8823627	8825468	+	promoter,downstream
28	LOC_Os12g15730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8983519	8985508	+	promoter,downstream
28	LOC_Os02g40580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	24605906	24612410	-	promoter,downstream
28	LOC_Os12g09860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5226438	5232029	+	promoter,downstream
28	LOC_Os10g33470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	17554385	17557462	+	promoter,downstream
28	LOC_Os01g35550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19666471	19667760	-	promoter,downstream
28	LOC_Os10g17440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8711768	8712667	+	promoter
28	LOC_Os06g35450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20654817	20657113	+	promoter,downstream
28	LOC_Os12g35730	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr12	21710955	21714359	-	promoter
28	LOC_Os06g38130	his Kinase A domain containing protein	gene	his Kinase A domain containing protein	chr6	22575955	22577194	+	promoter
28	LOC_Os05g19350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11236866	11239036	+	promoter,downstream
28	LOC_Os04g20820	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	11679717	11680161	+	promoter
28	LOC_Os05g46920	expressed protein	gene	expressed protein	chr5	27087970	27091195	+	promoter
28	LOC_Os08g25340	hypothetical protein	gene	hypothetical protein	chr8	15412321	15415369	+	promoter
28	LOC_Os02g33290	expressed protein	gene	expressed protein	chr2	19775891	19777735	+	promoter
28	LOC_Os04g28670	hypothetical protein	gene	hypothetical protein	chr4	16811064	16812623	+	promoter
28	LOC_Os09g01190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	176782	178053	-	promoter,downstream
28	LOC_Os09g14390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8496999	8499397	-	promoter,downstream
28	LOC_Os01g13450	hypothetical protein	gene	hypothetical protein	chr1	7488233	7488949	-	promoter
28	LOC_Os08g04720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2349553	2352511	-	promoter
28	LOC_Os02g20130	DEFL72 - Defensin and Defensin-like DEFL family	gene	DEFL72 - Defensin and Defensin-like DEFL family	chr2	11860593	11860978	-	promoter
28	LOC_Os07g15090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	8646496	8647122	+	promoter,downstream
28	LOC_Os05g40880	hypothetical protein	gene	hypothetical protein	chr5	23911837	23912874	+	promoter
28	LOC_Os01g35400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19582967	19585683	-	promoter,downstream
28	LOC_Os02g09120	isoleucyl-tRNA synthetase, cytoplasmic, putative	gene	isoleucyl-tRNA synthetase, cytoplasmic, putative	chr2	4676847	4679922	-	promoter
28	LOC_Os06g31910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18536016	18540643	-	promoter,downstream
28	LOC_Os11g27000	hypothetical protein	gene	hypothetical protein	chr11	15089170	15090492	+	promoter,downstream
28	LOC_Os04g04810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2310794	2312439	+	promoter
28	LOC_Os05g15290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8669974	8672533	-	promoter
28	LOC_Os06g03280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1248545	1251355	+	promoter,downstream
28	LOC_Os05g27700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16076968	16079420	-	promoter,downstream
28	LOC_Os09g04360	hypothetical protein	gene	hypothetical protein	chr9	2310123	2310437	-	promoter,downstream
28	LOC_Os10g29130	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	15105280	15105639	-	promoter,downstream
28	LOC_Os07g15520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9001306	9001734	-	promoter
28	LOC_Os09g12190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6887612	6890991	-	promoter
28	LOC_Os10g22356	expressed protein	gene	expressed protein	chr10	11495747	11496093	+	promoter
28	LOC_Os05g26120	hypothetical protein	gene	hypothetical protein	chr5	15134059	15135273	-	promoter
28	LOC_Os03g61460	hypothetical protein	gene	hypothetical protein	chr3	34858630	34859792	+	promoter,downstream
28	LOC_Os09g21200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12789271	12791761	-	promoter
28	LOC_Os03g46810	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr3	26467856	26469431	-	promoter
28	LOC_Os12g36800	hypothetical protein	gene	hypothetical protein	chr12	22527783	22528107	+	promoter
28	LOC_Os09g10320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5623093	5623416	+	promoter,downstream
28	LOC_Os01g59390	hypothetical protein	gene	hypothetical protein	chr1	34342497	34343577	-	promoter,downstream
28	LOC_Os05g43030	expressed protein	gene	expressed protein	chr5	24924444	24926959	-	promoter
28	LOC_Os01g39590	hypothetical protein	gene	hypothetical protein	chr1	22331482	22332197	-	promoter
28	LOC_Os12g23970	hypothetical protein	gene	hypothetical protein	chr12	13619303	13619584	+	promoter
28	LOC_Os05g26440	PROLM10 - Prolamin precursor, putative	gene	PROLM10 - Prolamin precursor, putative	chr5	15315170	15315616	+	promoter,downstream
28	LOC_Os06g38629	unknown	gene	unknown	chr6	22935861	22936325	+	promoter
28	LOC_Os06g19680	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr6	11236430	11241835	-	promoter
28	LOC_Os10g06250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3204820	3206572	+	promoter
28	LOC_Os10g12800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7161671	7162960	+	promoter,downstream
28	LOC_Os07g28780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16845809	16848738	-	promoter
28	LOC_Os01g66470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	38587884	38590709	-	promoter
28	LOC_Os07g18010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10656040	10656561	+	promoter,downstream
28	LOC_Os05g49580	plastocyanin-like domain containing protein, putative, expressed	gene	plastocyanin-like domain containing protein, putative, expressed	chr5	28380849	28381632	-	promoter
28	LOC_Os01g51120	vesicle transport v-SNARE protein, putative, expressed	gene	vesicle transport v-SNARE protein, putative, expressed	chr1	29363482	29366984	+	promoter
28	LOC_Os09g15890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9709204	9711070	+	promoter
28	LOC_Os09g13190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7596316	7598296	-	promoter,downstream
28	LOC_Os10g20810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10482911	10485858	+	promoter
28	LOC_Os12g24850	hypothetical protein	gene	hypothetical protein	chr12	14251902	14252111	-	promoter,downstream
28	LOC_Os11g36630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21148892	21151913	+	promoter
28	LOC_Os04g05160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2562322	2569048	+	promoter,downstream
28	LOC_Os04g30820	hypothetical protein	gene	hypothetical protein	chr4	18251879	18252764	-	promoter
28	LOC_Os05g48500	expressed protein	gene	expressed protein	chr5	27730799	27735738	+	promoter
28	LOC_Os10g17570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8791887	8795573	+	promoter
28	LOC_Os08g29809	resistance protein LR10, putative, expressed	gene	resistance protein LR10, putative, expressed	chr8	18316376	18327200	-	promoter
28	LOC_Os04g21810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	12349826	12350428	+	promoter,downstream
28	LOC_Os04g07530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4000816	4003686	-	promoter,downstream
28	LOC_Os07g24220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13770437	13770832	+	promoter
28	LOC_Os08g12340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7269613	7270317	+	promoter,downstream
28	LOC_Os12g37280	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr12	22839331	22844099	-	promoter
28	LOC_Os01g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13741276	13742547	-	promoter,downstream
28	LOC_Os01g69820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	40311870	40315128	+	promoter
28	LOC_Os05g52019	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29808008	29808994	+	promoter,downstream
28	LOC_Os04g05870	hypothetical protein	gene	hypothetical protein	chr4	3014141	3014437	+	promoter
28	LOC_Os09g02810	CCAAT/enhancer-binding protein, putative, expressed	gene	CCAAT/enhancer-binding protein, putative, expressed	chr9	1297966	1311563	+	promoter
28	LOC_Os05g20800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12206933	12209731	+	promoter
28	LOC_Os02g28800	hypothetical protein	gene	hypothetical protein	chr2	17027964	17028486	+	promoter
28	LOC_Os06g41770	bZIP transcription factor domain containing protein, expressed	gene	bZIP transcription factor domain containing protein, expressed	chr6	25040775	25043114	+	promoter
28	LOC_Os04g05150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2556581	2558930	-	promoter
28	LOC_Os10g11550	hypothetical protein	gene	hypothetical protein	chr10	6409931	6410404	+	promoter,downstream
28	LOC_Os03g05410	hypothetical protein	gene	hypothetical protein	chr3	2666497	2667996	-	promoter
28	LOC_Os05g15220	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	8633171	8638271	-	promoter
28	LOC_Os12g13520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	7585029	7585565	+	promoter
28	LOC_Os12g14540	expressed protein	gene	expressed protein	chr12	8298821	8299490	+	promoter
28	LOC_Os03g44940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25370834	25373446	+	promoter
28	LOC_Os02g19924	aminotransferase, classes I and II, domain containing protein, expressed	gene	aminotransferase, classes I and II, domain containing protein, expressed	chr2	11716851	11736542	+	promoter
28	LOC_Os04g20460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11434535	11436707	+	promoter
28	LOC_Os01g32420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17781993	17782733	-	promoter,downstream
28	LOC_Os06g26290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	15390918	15391313	-	promoter,downstream
28	LOC_Os04g07190	hypothetical protein	gene	hypothetical protein	chr4	3813500	3814601	-	promoter
28	LOC_Os09g26030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15645191	15648891	+	promoter
28	LOC_Os11g22890	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	12701705	12702220	-	promoter,downstream
28	LOC_Os03g28289	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	16279002	16280802	-	promoter
28	LOC_Os01g23270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13075574	13078009	+	promoter,downstream
28	LOC_Os04g54170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32086147	32086747	-	promoter
28	LOC_Os07g25180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14384452	14384811	-	promoter,downstream
28	LOC_Os05g52037	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29816565	29817551	+	promoter,downstream
28	LOC_Os07g23690	root cap protein 1, putative	gene	root cap protein 1, putative	chr7	13372312	13372726	-	promoter,downstream
28	LOC_Os04g43790	hypothetical protein	gene	hypothetical protein	chr4	25738826	25740323	+	promoter
28	LOC_Os03g32749	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18749682	18754613	-	promoter,downstream
28	LOC_Os09g06990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3386610	3386951	-	promoter
28	LOC_Os08g13820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8248728	8249527	-	promoter,downstream
28	LOC_Os05g16690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9484971	9489113	-	promoter
28	LOC_Os04g38180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22531574	22538182	-	promoter,downstream
28	LOC_Os08g22940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13786286	13788946	+	promoter,downstream
28	LOC_Os05g15330	hypothetical protein	gene	hypothetical protein	chr5	8683985	8684943	-	promoter
28	LOC_Os02g46110	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	28099353	28101044	+	promoter
28	LOC_Os03g39850	glutathione S-transferase, putative, expressed	gene	glutathione S-transferase, putative, expressed	chr3	22158753	22160001	-	promoter
28	LOC_Os04g22010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12450768	12457438	+	promoter,downstream
28	LOC_Os08g26060	hypothetical protein	gene	hypothetical protein	chr8	15851628	15852056	-	promoter
28	LOC_Os11g26630	hypothetical protein	gene	hypothetical protein	chr11	14796704	14797084	-	promoter,downstream
28	LOC_Os07g35260	TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed	gene	TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed	chr7	21103516	21109015	+	promoter
28	LOC_Os07g22070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12334690	12337758	+	promoter
28	LOC_Os11g29470	expressed protein	gene	expressed protein	chr11	16631968	16634045	-	promoter
28	LOC_Os09g29190	phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed	gene	phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed	chr9	17741545	17745504	+	promoter
28	LOC_Os09g06180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2894556	2895859	+	promoter,downstream
28	LOC_Os11g21804	expressed protein	gene	expressed protein	chr11	12046296	12047476	-	promoter
28	LOC_Os09g40085	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	23009502	23011004	-	promoter
28	LOC_Os09g01510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	370137	370370	+	promoter
28	LOC_Os05g51570	vacuolar-processing enzyme precursor, putative, expressed	gene	vacuolar-processing enzyme precursor, putative, expressed	chr5	29516399	29518053	-	promoter
28	LOC_Os09g24760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14749421	14752663	+	promoter
28	LOC_Os07g16080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9371983	9372402	-	promoter,downstream
28	LOC_Os07g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10895642	10897027	-	promoter,downstream
28	LOC_Os01g63560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36853857	36854810	-	promoter
28	LOC_Os01g25860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14662628	14669376	-	promoter,downstream
28	LOC_Os10g11844	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6581032	6583151	+	promoter
28	LOC_Os05g31180	hypothetical protein	gene	hypothetical protein	chr5	18082434	18083463	-	promoter
28	LOC_Os12g22960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12979413	12979971	-	promoter,downstream
28	LOC_Os05g16530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9382525	9384133	-	promoter
28	LOC_Os05g52010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	29804138	29805001	-	promoter,downstream
28	LOC_Os05g27830	hypothetical protein	gene	hypothetical protein	chr5	16170221	16170604	+	promoter,downstream
28	LOC_Os05g17260	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	9874222	9880971	-	promoter,downstream
28	LOC_Os03g03130	ubiquitin-conjugating enzyme, putative, expressed	gene	ubiquitin-conjugating enzyme, putative, expressed	chr3	1317242	1320663	+	promoter
28	LOC_Os09g06290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2946031	2947470	+	promoter,downstream
28	LOC_Os07g47890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28603837	28606185	+	promoter,downstream
28	LOC_Os10g10090	hypothetical protein	gene	hypothetical protein	chr10	5527729	5528085	+	promoter
28	LOC_Os08g23840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14432195	14435396	+	promoter,downstream
28	LOC_Os07g44250	dirigent, putative, expressed	gene	dirigent, putative, expressed	chr7	26444638	26445529	-	promoter
28	LOC_Os02g27940	calcineurin B, putative	gene	calcineurin B, putative	chr2	16524879	16528194	+	promoter
28	LOC_Os03g32980	hypothetical protein	gene	hypothetical protein	chr3	18854700	18855221	+	promoter,downstream
28	LOC_Os10g24630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12574916	12575664	+	promoter,downstream
28	LOC_Os08g12690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7520655	7522225	-	promoter,downstream
28	LOC_Os08g38040	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	24099318	24104270	-	promoter,downstream
28	LOC_Os10g15140	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	7950447	7950878	-	promoter
28	LOC_Os02g16380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9333330	9334743	-	promoter,downstream
28	LOC_Os04g25070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14448949	14452581	-	promoter
28	LOC_Os07g37020	hypothetical protein	gene	hypothetical protein	chr7	22181890	22182869	+	promoter
28	LOC_Os10g05120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2499790	2500504	-	promoter
28	LOC_Os03g36050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19993827	19998872	+	promoter,downstream
28	LOC_Os11g30940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17532190	17533682	+	promoter
28	LOC_Os04g43190	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	25376504	25377186	+	promoter
28	LOC_Os06g25920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15174784	15175495	+	promoter
28	LOC_Os10g12720	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	7113339	7114035	+	promoter
28	LOC_Os08g27940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17024111	17027141	-	promoter
28	LOC_Os06g30770	CAF1 family ribonuclease containing protein, putative	gene	CAF1 family ribonuclease containing protein, putative	chr6	17844581	17845069	+	promoter
28	LOC_Os08g10340	OsFBX278 - F-box domain containing protein, expressed	gene	OsFBX278 - F-box domain containing protein, expressed	chr8	6054592	6058022	+	promoter
28	LOC_Os04g05430	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr4	2721989	2732564	-	promoter
28	LOC_Os01g40780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23034821	23036186	+	promoter,downstream
28	LOC_Os04g16490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8959152	8960569	+	promoter
28	LOC_Os05g39360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23025018	23025486	+	promoter
28	LOC_Os04g04320	expressed protein	gene	expressed protein	chr4	2014816	2022040	+	promoter
28	LOC_Os07g16560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9708851	9715425	-	promoter,downstream
28	LOC_Os08g41920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26481323	26482929	-	promoter
28	LOC_Os06g39460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	23429642	23434093	+	promoter
28	LOC_Os12g29030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17183202	17184485	-	promoter,downstream
28	LOC_Os04g06190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3212511	3213569	-	promoter,downstream
28	LOC_Os10g19925	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	9921141	9921581	-	promoter
28	LOC_Os05g18980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11014480	11017794	+	promoter,downstream
28	LOC_Os10g20420	hypothetical protein	gene	hypothetical protein	chr10	10199930	10200421	+	promoter,downstream
28	LOC_Os06g38240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22626393	22629965	+	promoter
28	LOC_Os12g11480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6200270	6201195	+	promoter
28	LOC_Os01g37340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20845566	20847173	+	promoter
28	LOC_Os04g15780	hypothetical protein	gene	hypothetical protein	chr4	8566252	8569071	-	promoter,downstream
28	LOC_Os04g31880	hypothetical protein	gene	hypothetical protein	chr4	18912498	18914428	+	promoter
28	LOC_Os08g26430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16100782	16105870	+	promoter,downstream
28	LOC_Os05g15020	hypothetical protein	gene	hypothetical protein	chr5	8514402	8514950	+	promoter,downstream
28	LOC_Os07g14050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8015855	8018648	-	promoter
28	LOC_Os11g34190	expressed protein	gene	expressed protein	chr11	19552183	19558871	+	promoter
28	LOC_Os11g17440	enoyl-CoA hydratase/isomerase family protein	gene	enoyl-CoA hydratase/isomerase family protein	chr11	9714538	9722664	-	promoter
28	LOC_Os12g17400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9971351	9971878	-	promoter
28	LOC_Os12g22660	hypothetical protein	gene	hypothetical protein	chr12	12796931	12797729	+	promoter
28	LOC_Os08g10530	expressed protein	gene	expressed protein	chr8	6180136	6180762	-	promoter
28	LOC_Os04g09520	LTPL59 - Protease inhibitor/seed storage/LTP family protein precursor, putative	gene	LTPL59 - Protease inhibitor/seed storage/LTP family protein precursor, putative	chr4	5091070	5094089	-	promoter
28	LOC_Os01g57294	hypothetical protein	gene	hypothetical protein	chr1	33114161	33114943	+	promoter
28	LOC_Os08g18090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11088549	11091911	+	promoter
28	LOC_Os04g18100	hypothetical protein	gene	hypothetical protein	chr4	9993029	9993346	+	promoter
28	LOC_Os01g25710	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	14570811	14580124	-	promoter
28	LOC_Os06g03290	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	1253271	1253639	-	promoter,downstream
28	LOC_Os07g20164	expressed protein	gene	expressed protein	chr7	11641558	11643293	+	promoter
28	LOC_Os08g42820	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	27074176	27075517	-	promoter
28	LOC_Os02g25860	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	15145494	15147449	+	promoter
28	LOC_Os05g02860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	1034196	1040084	-	promoter
28	LOC_Os12g06950	hypothetical protein	gene	hypothetical protein	chr12	3392650	3392997	+	promoter
28	LOC_Os01g25990	expressed protein	gene	expressed protein	chr1	14729116	14737398	-	promoter
28	LOC_Os04g05360	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2663165	2665450	-	promoter
28	LOC_Os02g41690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25026348	25029190	+	promoter,downstream
28	LOC_Os09g13560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7861770	7865467	+	promoter
28	LOC_Os07g41390	hypothetical protein	gene	hypothetical protein	chr7	24799538	24803072	+	promoter
28	LOC_Os01g27990	NPL4, putative, expressed	gene	NPL4, putative, expressed	chr1	15643786	15648494	+	promoter
28	LOC_Os01g31290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17115022	17115555	+	promoter,downstream
28	LOC_Os12g21590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12130411	12130845	+	promoter,downstream
28	LOC_Os05g05530	expressed protein	gene	expressed protein	chr5	2748300	2752895	-	promoter
28	LOC_Os09g17290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10595913	10599610	+	promoter
28	LOC_Os02g16180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9198806	9199597	+	promoter,downstream
28	LOC_Os01g09060	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	4558006	4558950	-	promoter
28	LOC_Os07g27240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15829680	15830201	+	promoter
28	LOC_Os09g15639	expressed protein	gene	expressed protein	chr9	9543293	9545479	+	promoter
28	LOC_Os03g10620	hydrolase, alpha/beta fold family domain containing protein, expressed	gene	hydrolase, alpha/beta fold family domain containing protein, expressed	chr3	5421148	5425577	+	promoter
28	LOC_Os11g20150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11633276	11639644	-	promoter,downstream
28	LOC_Os08g09150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	5303876	5307017	+	promoter
28	LOC_Os03g32920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18823903	18825729	-	promoter
28	LOC_Os12g20020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11644467	11646401	-	promoter
28	LOC_Os03g41810	hypothetical protein	gene	hypothetical protein	chr3	23217269	23217700	-	promoter
28	LOC_Os11g14370	hypothetical protein	gene	hypothetical protein	chr11	8064632	8066633	+	promoter
28	LOC_Os12g30110	hypothetical protein	gene	hypothetical protein	chr12	18008626	18010392	-	promoter
28	LOC_Os07g25200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14396628	14400770	-	promoter,downstream
28	LOC_Os01g43110	expressed protein	gene	expressed protein	chr1	24591468	24595176	-	promoter
28	LOC_Os04g06620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3483405	3484196	-	promoter,downstream
28	LOC_Os07g03640	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	1475301	1475717	+	promoter
28	LOC_Os06g23930	hypothetical protein	gene	hypothetical protein	chr6	13978045	13978468	-	promoter
28	LOC_Os11g44360	hypothetical protein	gene	hypothetical protein	chr11	26344668	26345045	+	promoter,downstream
28	LOC_Os05g22670	transcription factor IIA large subunit, putative, expressed	gene	transcription factor IIA large subunit, putative, expressed	chr5	12808826	12815325	+	promoter
28	LOC_Os08g19360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11576792	11580018	-	promoter
28	LOC_Os03g02360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	828036	831297	-	promoter,downstream
28	LOC_Os02g55940	ribosomal protein S15 containing protein, expressed	gene	ribosomal protein S15 containing protein, expressed	chr2	34233060	34236233	+	promoter
28	LOC_Os02g18910	hypothetical protein	gene	hypothetical protein	chr2	11042928	11043707	+	promoter
28	LOC_Os08g20250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12149892	12155387	-	promoter,downstream
28	LOC_Os03g32780	hypothetical protein	gene	hypothetical protein	chr3	18761733	18762158	-	promoter,downstream
28	LOC_Os01g04790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2194975	2197785	-	promoter
28	LOC_Os01g64090	L1P family of ribosomal proteins domain containing protein, expressed	gene	L1P family of ribosomal proteins domain containing protein, expressed	chr1	37230464	37233609	+	promoter
28	LOC_Os08g33290	hypothetical protein	gene	hypothetical protein	chr8	20740725	20742791	+	promoter
28	LOC_Os07g36770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	22028092	22033867	-	promoter
28	LOC_Os06g21330	ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed	gene	ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed	chr6	12317392	12321833	+	promoter
28	LOC_Os08g19670	expressed protein	gene	expressed protein	chr8	11772698	11773712	-	promoter,downstream
28	LOC_Os02g30030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17834067	17835800	-	promoter
28	LOC_Os06g14430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8073981	8075942	-	promoter,downstream
28	LOC_Os08g34570	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein	gene	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein	chr8	21705887	21706686	+	promoter
28	LOC_Os07g49430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29598198	29603903	+	promoter
28	LOC_Os08g35800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22575041	22578255	+	promoter,downstream
28	LOC_Os08g21890	hypothetical protein	gene	hypothetical protein	chr8	13108348	13111040	-	promoter
28	LOC_Os02g49010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29967219	29968833	-	promoter
28	LOC_Os02g52220	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr2	31969729	31972353	+	promoter
28	LOC_Os01g22300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12535518	12536867	-	promoter,downstream
28	LOC_Os08g13290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7896867	7900198	+	promoter,downstream
28	LOC_Os10g23204	CutA, chloroplast precursor, putative, expressed	gene	CutA, chloroplast precursor, putative, expressed	chr10	12036580	12041835	+	promoter
28	LOC_Os07g22990	hypothetical protein	gene	hypothetical protein	chr7	12969013	12969829	+	promoter,downstream
28	LOC_Os08g22820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13716050	13722714	+	promoter,downstream
28	LOC_Os02g44670	harpin-induced protein 1 domain containing protein, expressed	gene	harpin-induced protein 1 domain containing protein, expressed	chr2	27067351	27068224	+	promoter
28	LOC_Os10g23960	hypothetical protein	gene	hypothetical protein	chr10	12215396	12215845	-	promoter,downstream
28	LOC_Os06g27530	hypothetical protein	gene	hypothetical protein	chr6	15586279	15587703	+	promoter,downstream
28	LOC_Os01g32280	transmembrane protein, putative, expressed	gene	transmembrane protein, putative, expressed	chr1	17696034	17705330	+	promoter
28	LOC_Os02g25070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14548326	14549539	+	promoter
28	LOC_Os12g06710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3263844	3267417	-	promoter,downstream
28	LOC_Os12g26840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15722686	15724819	-	promoter
28	LOC_Os11g19750	hypothetical protein	gene	hypothetical protein	chr11	11375605	11376179	+	promoter
28	LOC_Os05g15610	expressed protein	gene	expressed protein	chr5	8844305	8844612	+	promoter
28	LOC_Os08g11650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6834797	6835231	-	promoter,downstream
28	LOC_Os08g21320	hypothetical protein	gene	hypothetical protein	chr8	12707773	12708006	-	promoter
28	LOC_Os09g10880	hypothetical protein	gene	hypothetical protein	chr9	5960154	5965211	+	promoter
28	LOC_Os11g28700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16127842	16133637	-	promoter
28	LOC_Os10g42460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22819713	22821850	+	promoter,downstream
28	LOC_Os06g07580	expressed protein	gene	expressed protein	chr6	3655475	3656131	+	promoter
28	LOC_Os12g30100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18001372	18004989	+	promoter,downstream
28	LOC_Os02g07100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	3647845	3650789	+	promoter
28	LOC_Os02g11800	hypothetical protein	gene	hypothetical protein	chr2	6104663	6104989	-	promoter,downstream
28	LOC_Os08g05140	hypothetical protein	gene	hypothetical protein	chr8	2657437	2658720	+	promoter,downstream
28	LOC_Os03g24200	OsFBX85 - F-box domain containing protein	gene	OsFBX85 - F-box domain containing protein	chr3	13762126	13763597	+	promoter
28	LOC_Os01g24870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14004014	14005998	+	promoter,downstream
28	LOC_Os05g23310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13248733	13248969	-	promoter,downstream
28	LOC_Os02g22310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13328857	13329423	+	promoter,downstream
28	LOC_Os01g35149	hypothetical protein	gene	hypothetical protein	chr1	19449652	19449864	+	promoter
28	LOC_Os08g06910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3854558	3855243	-	promoter
28	LOC_Os05g30370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17545277	17546308	-	promoter,downstream
28	LOC_Os04g20100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11186114	11189813	+	promoter
28	LOC_Os04g24274	hypothetical protein	gene	hypothetical protein	chr4	13893623	13898728	+	promoter
28	LOC_Os06g37908	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22442243	22443592	+	promoter,downstream
28	LOC_Os04g03260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1384514	1387263	-	promoter
28	LOC_Os11g09395	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5036442	5038589	-	promoter
28	LOC_Os03g41419	serpin domain containing protein, putative, expressed	gene	serpin domain containing protein, putative, expressed	chr3	23046710	23051987	+	promoter
28	LOC_Os01g09810	uncharacterized UPF0114 domain containing protein	gene	uncharacterized UPF0114 domain containing protein	chr1	5072416	5073930	-	promoter,downstream
28	LOC_Os11g14920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	8387592	8390347	+	promoter
28	LOC_Os04g29370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17279640	17282289	-	promoter
28	LOC_Os08g04090	expressed protein	gene	expressed protein	chr8	1987307	1989832	+	promoter
28	LOC_Os02g16310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	9277216	9278748	+	promoter,downstream
28	LOC_Os07g39420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23611730	23612293	+	promoter,downstream
28	LOC_Os10g01320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	196090	199212	+	promoter,downstream
28	LOC_Os10g09260	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	5022111	5022647	-	promoter,downstream
28	LOC_Os05g27740	hypothetical protein	gene	hypothetical protein	chr5	16098911	16102144	-	promoter
28	LOC_Os12g26910	hypothetical protein	gene	hypothetical protein	chr12	15766239	15766841	+	promoter,downstream
28	LOC_Os03g57830	hypothetical protein	gene	hypothetical protein	chr3	32941084	32943765	-	promoter
28	LOC_Os05g18550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10740507	10744271	+	promoter,downstream
28	LOC_Os10g11560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6412968	6413569	-	promoter,downstream
28	LOC_Os06g13940	expressed protein	gene	expressed protein	chr6	7762144	7762950	-	promoter
28	LOC_Os07g16364	expressed protein	gene	expressed protein	chr7	9563931	9565201	+	promoter
28	LOC_Os04g19330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10744134	10745163	+	promoter
28	LOC_Os01g19090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	10786743	10787735	+	promoter,downstream
28	LOC_Os12g15120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8623547	8627229	-	promoter,downstream
28	LOC_Os03g33270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19031732	19031968	-	promoter,downstream
28	LOC_Os07g49070	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	29375269	29379980	+	promoter
28	LOC_Os04g10040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5398024	5399802	+	promoter,downstream
28	LOC_Os05g44720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25935380	25937131	-	promoter,downstream
28	LOC_Os07g28080	hypothetical protein	gene	hypothetical protein	chr7	16371890	16372934	+	promoter
28	LOC_Os06g35740	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	20858957	20859831	+	promoter
28	LOC_Os10g03150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1329561	1331870	-	promoter,downstream
28	LOC_Os06g16140	expressed protein	gene	expressed protein	chr6	9185473	9188864	+	promoter
28	LOC_Os12g06860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3334325	3335123	+	promoter
28	LOC_Os02g49300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	30122093	30125424	-	promoter
28	LOC_Os08g12310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7253480	7254744	+	promoter
28	LOC_Os08g33130	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	20584953	20585291	+	promoter
28	LOC_Os06g39830	hypothetical protein	gene	hypothetical protein	chr6	23661021	23661751	+	promoter,downstream
28	LOC_Os12g26770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15682373	15684617	+	promoter
28	LOC_Os01g24330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13704051	13706809	-	promoter
28	LOC_Os01g19190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10852777	10858401	+	promoter
28	LOC_Os12g25670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	14871873	14872340	+	promoter
28	LOC_Os04g27750	expressed protein	gene	expressed protein	chr4	16230183	16230745	+	promoter
28	LOC_Os08g23550	hypothetical protein	gene	hypothetical protein	chr8	14253000	14253317	-	promoter,downstream
28	LOC_Os09g04700	hypothetical protein	gene	hypothetical protein	chr9	2499021	2499313	-	promoter
28	LOC_Os10g35240	Rf1, mitochondrial precursor, putative, expressed	gene	Rf1, mitochondrial precursor, putative, expressed	chr10	18760733	18764605	-	promoter
28	LOC_Os06g25130	expressed protein	gene	expressed protein	chr6	14703831	14705817	+	promoter,downstream
28	LOC_Os02g18740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10929025	10931388	+	promoter
28	LOC_Os09g04290	expressed protein	gene	expressed protein	chr9	2280588	2282475	+	promoter
28	LOC_Os09g09800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5312449	5315317	+	promoter,downstream
28	LOC_Os03g32390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18526867	18528182	+	promoter
28	LOC_Os01g31590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	17286266	17286541	+	promoter,downstream
28	LOC_Os12g13560	hypothetical protein	gene	hypothetical protein	chr12	7608254	7608580	+	promoter
28	LOC_Os08g35650	hypothetical protein	gene	hypothetical protein	chr8	22472343	22476456	-	promoter
28	LOC_Os12g30850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	18508128	18509277	+	promoter,downstream
28	LOC_Os10g42050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	22542821	22549180	+	promoter
28	LOC_Os08g17710	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	10836783	10838658	-	promoter
28	LOC_Os01g01570	kinesin heavy chain, putative, expressed	gene	kinesin heavy chain, putative, expressed	chr1	287372	291296	+	promoter
28	LOC_Os08g27660	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	16859783	16860172	+	promoter,downstream
28	LOC_Os05g10490	hypothetical protein	gene	hypothetical protein	chr5	5707977	5709610	+	promoter
28	LOC_Os05g18120	hypothetical protein	gene	hypothetical protein	chr5	10419672	10420262	+	promoter
28	LOC_Os12g27890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16439540	16441554	-	promoter,downstream
28	LOC_Os12g33670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20298289	20301402	-	promoter
28	LOC_Os11g43570	hypothetical protein	gene	hypothetical protein	chr11	25820962	25821611	+	promoter
28	LOC_Os11g27110	expressed protein	gene	expressed protein	chr11	15135196	15136548	+	promoter
28	LOC_Os03g33220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18992906	18995588	+	promoter,downstream
28	LOC_Os07g15990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9318975	9319529	+	promoter,downstream
28	LOC_Os12g43760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	27151012	27153132	-	promoter
28	LOC_Os08g08470	hypothetical protein	gene	hypothetical protein	chr8	4881000	4883845	-	promoter,downstream
28	LOC_Os08g21124	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12620158	12629677	-	promoter
28	LOC_Os05g14660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8339171	8339605	+	promoter
28	LOC_Os05g08090	expressed protein	gene	expressed protein	chr5	4401839	4408248	+	promoter
28	LOC_Os01g45210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	25652894	25658989	+	promoter,downstream
28	LOC_Os04g26150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15241683	15242725	+	promoter
28	LOC_Os04g06650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3498876	3500807	+	promoter,downstream
28	LOC_Os11g35770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20533272	20534556	-	promoter
28	LOC_Os10g09400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5084636	5091353	+	promoter,downstream
28	LOC_Os01g36750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20410591	20411211	+	promoter
28	LOC_Os04g40220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	23742373	23745170	+	promoter,downstream
28	LOC_Os01g54300	OsMan02 - Endo-Beta-Mannanase	gene	OsMan02 - Endo-Beta-Mannanase	chr1	31247275	31253692	-	promoter
28	LOC_Os05g22290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12561445	12563139	+	promoter
28	LOC_Os01g22820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12820531	12820882	+	promoter,downstream
28	LOC_Os07g11710	hypothetical protein	gene	hypothetical protein	chr7	6478231	6478707	+	promoter,downstream
28	LOC_Os05g18020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10366801	10367591	-	promoter,downstream
28	LOC_Os11g06950	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	3439205	3439564	-	promoter,downstream
28	LOC_Os02g32670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19369601	19379945	+	promoter
28	LOC_Os05g16600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9409485	9414062	+	promoter,downstream
28	LOC_Os03g38020	mps one binder kinase activator-like 1A, putative, expressed	gene	mps one binder kinase activator-like 1A, putative, expressed	chr3	21107274	21110877	+	promoter
28	LOC_Os08g24690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14913295	14916161	-	promoter,downstream
28	LOC_Os04g13820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7703606	7709995	-	promoter,downstream
28	LOC_Os08g27310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16673740	16675245	-	promoter
28	LOC_Os06g27510	hypothetical protein	gene	hypothetical protein	chr6	15572832	15573050	+	promoter,downstream
28	LOC_Os12g07070	hypothetical protein	gene	hypothetical protein	chr12	3465452	3466346	+	promoter,downstream
28	LOC_Os01g23239	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13065358	13065660	-	promoter
28	LOC_Os09g12500	EMB1381, putative, expressed	gene	EMB1381, putative, expressed	chr9	7165573	7170386	+	promoter
28	LOC_Os04g11940	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	6546583	6546855	-	promoter
28	LOC_Os01g39060	expressed protein	gene	expressed protein	chr1	21954848	21962308	+	promoter
28	LOC_Os08g23060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13882761	13885553	-	promoter,downstream
28	LOC_Os11g33090	amidase, putative, expressed	gene	amidase, putative, expressed	chr11	19106088	19110227	-	promoter
28	LOC_Os11g17040	hypothetical protein	gene	hypothetical protein	chr11	9434879	9435232	+	promoter
28	LOC_Os12g23010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13005852	13008735	-	promoter,downstream
28	LOC_Os01g40370	phosphatase-associated family protein, putative	gene	phosphatase-associated family protein, putative	chr1	22790068	22792679	+	promoter
28	LOC_Os12g37480	invertase/pectin methylesterase inhibitor family protein, putative, expressed	gene	invertase/pectin methylesterase inhibitor family protein, putative, expressed	chr12	22966327	22967418	-	promoter
28	LOC_Os11g33010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	19045908	19048799	+	promoter,downstream
28	LOC_Os05g43360	NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed	gene	NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed	chr5	25151953	25155281	+	promoter
28	LOC_Os11g22630	hypothetical protein	gene	hypothetical protein	chr11	12549322	12551582	-	promoter,downstream
28	LOC_Os09g03530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1737465	1738772	+	promoter,downstream
28	LOC_Os02g16430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9374340	9376532	+	promoter,downstream
28	LOC_Os01g16170	PQ loop repeat domain containing protein, expressed	gene	PQ loop repeat domain containing protein, expressed	chr1	9132519	9139430	-	promoter
28	LOC_Os11g05260	phosphoglycerate mutase, putative, expressed	gene	phosphoglycerate mutase, putative, expressed	chr11	2325817	2329126	+	promoter
28	LOC_Os01g29210	hypothetical protein	gene	hypothetical protein	chr1	16362651	16363220	-	promoter
28	LOC_Os11g18930	hypothetical protein	gene	hypothetical protein	chr11	10759668	10760053	-	promoter
28	LOC_Os06g16070	receptor-like protein kinase 2 precursor, putative	gene	receptor-like protein kinase 2 precursor, putative	chr6	9145960	9149342	-	promoter
28	LOC_Os05g09370	kinase, pfkB family, putative, expressed	gene	kinase, pfkB family, putative, expressed	chr5	5254224	5262130	-	promoter
28	LOC_Os01g74390	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	43085129	43088884	-	promoter,downstream
28	LOC_Os09g28990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17622708	17623887	+	promoter,downstream
28	LOC_Os10g31340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16366922	16367956	+	promoter,downstream
28	LOC_Os03g35470	hypothetical protein	gene	hypothetical protein	chr3	19666080	19666460	+	promoter,downstream
28	LOC_Os10g24570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12540787	12543819	+	promoter,downstream
28	LOC_Os09g17720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10831825	10833087	+	promoter
28	LOC_Os11g43160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25572924	25573700	+	promoter,downstream
28	LOC_Os09g23130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13678419	13680897	-	promoter,downstream
28	LOC_Os03g30970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17630849	17632309	+	promoter
28	LOC_Os08g12720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7536415	7538118	-	promoter
28	LOC_Os01g38950	CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed	gene	CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed	chr1	21877943	21882992	+	promoter
28	LOC_Os11g34970	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr11	20030472	20034340	+	promoter
28	LOC_Os08g16510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10113862	10114977	-	promoter,downstream
28	LOC_Os07g28550	hypothetical protein	gene	hypothetical protein	chr7	16709919	16710537	-	promoter,downstream
28	LOC_Os04g10960	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	5942209	5945905	+	promoter
28	LOC_Os01g47240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	26990917	26994153	+	promoter
28	LOC_Os04g16240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8814148	8816043	+	promoter,downstream
28	LOC_Os01g31890	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	17469228	17470474	-	promoter,downstream
28	LOC_Os08g34200	hypothetical protein	gene	hypothetical protein	chr8	21436247	21437179	+	promoter
28	LOC_Os01g47890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27408492	27411796	-	promoter
28	LOC_Os04g24870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14322422	14323471	-	promoter
28	LOC_Os01g39150	DUF260 domain containing protein, putative	gene	DUF260 domain containing protein, putative	chr1	22035785	22036540	+	promoter
28	LOC_Os01g23970	cysteine-rich receptor protein kinase, putative	gene	cysteine-rich receptor protein kinase, putative	chr1	13486879	13489925	+	promoter
28	LOC_Os03g60060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34153164	34154919	+	promoter
28	LOC_Os08g23080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13897569	13901556	-	promoter,downstream
28	LOC_Os12g20310	sarcoma antigen NY-SAR-91, putative, expressed	gene	sarcoma antigen NY-SAR-91, putative, expressed	chr12	11859942	11863231	+	promoter
28	LOC_Os04g24180	heat shock protein binding protein, putative, expressed	gene	heat shock protein binding protein, putative, expressed	chr4	13825415	13831979	+	promoter
28	LOC_Os01g22760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12796169	12797576	-	promoter,downstream
28	LOC_Os03g01410	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr3	292668	293916	-	promoter
28	LOC_Os01g35789	expressed protein	gene	expressed protein	chr1	19822631	19825636	+	promoter
28	LOC_Os02g09230	hypothetical protein	gene	hypothetical protein	chr2	4747250	4748210	+	promoter
28	LOC_Os07g19330	hypothetical protein	gene	hypothetical protein	chr7	11436802	11437467	-	promoter,downstream
28	LOC_Os05g31525	expressed protein	gene	expressed protein	chr5	18279797	18280342	+	promoter
28	LOC_Os12g18280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10545733	10546500	+	promoter
28	LOC_Os07g30040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17700418	17707964	-	promoter
28	LOC_Os01g36170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	20000460	20007135	+	promoter,downstream
28	LOC_Os11g36300	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	20908751	20910576	+	promoter,downstream
28	LOC_Os04g05740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2930519	2931364	-	promoter
28	LOC_Os10g17820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8942953	8948683	+	promoter,downstream
28	LOC_Os03g48590	protein transport protein Sec61 subunit alpha, putative, expressed	gene	protein transport protein Sec61 subunit alpha, putative, expressed	chr3	27696176	27697688	-	promoter
28	LOC_Os05g39430	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	23067291	23068282	-	promoter
28	LOC_Os11g23210	hypothetical protein	gene	hypothetical protein	chr11	12897842	12900202	-	promoter,downstream
28	LOC_Os08g40820	expressed protein	gene	expressed protein	chr8	25815047	25820752	+	promoter
28	LOC_Os09g14810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8818281	8821214	-	promoter
28	LOC_Os03g31770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	18173928	18174170	-	promoter
28	LOC_Os04g08610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4677004	4677606	-	promoter,downstream
28	LOC_Os12g36270	expressed protein	gene	expressed protein	chr12	22180427	22185525	+	promoter
28	LOC_Os08g19510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11657421	11658536	-	promoter,downstream
28	LOC_Os10g06320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3255738	3256547	+	promoter
28	LOC_Os10g15120	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	7945398	7945793	+	promoter,downstream
28	LOC_Os04g08034	ZOS4-02 - C2H2 zinc finger protein, expressed	gene	ZOS4-02 - C2H2 zinc finger protein, expressed	chr4	4270491	4286303	+	promoter
28	LOC_Os04g29200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17139481	17141979	-	promoter
28	LOC_Os12g31150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18724095	18727792	+	promoter
28	LOC_Os05g20540	hypothetical protein	gene	hypothetical protein	chr5	12059733	12060069	-	promoter
28	LOC_Os10g29740	MBTB55 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	gene	MBTB55 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	chr10	15391574	15392686	+	promoter
28	LOC_Os03g21180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	12079677	12085829	+	promoter
28	LOC_Os03g12530	cation efflux family protein, putative, expressed	gene	cation efflux family protein, putative, expressed	chr3	6635576	6640550	+	promoter
28	LOC_Os05g44480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25820490	25821677	-	promoter
28	LOC_Os09g04780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2543661	2543897	+	promoter,downstream
28	LOC_Os04g48510	growth regulating factor protein, putative, expressed	gene	growth regulating factor protein, putative, expressed	chr4	28736755	28738556	+	promoter
28	LOC_Os12g03000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1115674	1118933	+	promoter,downstream
28	LOC_Os06g01120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	108866	109153	-	promoter,downstream
28	LOC_Os03g34020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19406763	19407443	+	promoter,downstream
28	LOC_Os04g14600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8186498	8188824	-	promoter,downstream
28	LOC_Os10g09740	hypothetical protein	gene	hypothetical protein	chr10	5285660	5287298	-	promoter
28	LOC_Os02g44160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26730662	26731855	+	promoter,downstream
28	LOC_Os04g19040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10564014	10565363	-	promoter,downstream
28	LOC_Os11g29180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16449549	16450334	+	promoter
28	LOC_Os05g45790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26461179	26464484	+	promoter,downstream
28	LOC_Os04g20950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11747838	11750825	-	promoter
28	LOC_Os08g33240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20712156	20712530	-	promoter,downstream
28	LOC_Os12g01650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	389873	393204	-	promoter
28	LOC_Os10g10244	alanyl-tRNA synthetase, putative, expressed	gene	alanyl-tRNA synthetase, putative, expressed	chr10	5648785	5659654	+	promoter
28	LOC_Os05g22550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12747904	12749772	-	promoter,downstream
28	LOC_Os07g35530	hypothetical protein	gene	hypothetical protein	chr7	21260794	21263270	+	promoter
28	LOC_Os05g17230	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9860220	9860750	+	promoter,downstream
28	LOC_Os08g17380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10628071	10628913	+	promoter
28	LOC_Os04g24120	hypothetical protein	gene	hypothetical protein	chr4	13769545	13770772	-	promoter
28	LOC_Os10g18410	hypothetical protein	gene	hypothetical protein	chr10	9290985	9291293	+	promoter
28	LOC_Os11g22040	expressed protein	gene	expressed protein	chr11	12210569	12211552	+	promoter,downstream
28	LOC_Os04g02140	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	705796	710490	-	promoter
28	LOC_Os05g22790	expressed protein	gene	expressed protein	chr5	12869321	12870062	-	promoter
28	LOC_Os08g12590	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	7448478	7449298	+	promoter
28	LOC_Os04g13770	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7672592	7673202	+	promoter,downstream
28	LOC_Os12g13690	hypothetical protein	gene	hypothetical protein	chr12	7717151	7717474	-	promoter,downstream
28	LOC_Os04g10730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5826157	5828476	-	promoter
28	LOC_Os07g17710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10457226	10460053	-	promoter
28	LOC_Os01g38280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21469473	21471573	-	promoter,downstream
28	LOC_Os07g38500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23131998	23137968	+	promoter
28	LOC_Os01g41800	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr1	23662015	23663400	-	promoter
28	LOC_Os10g11512	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	6399380	6399615	-	promoter,downstream
28	LOC_Os04g23680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13535366	13539115	+	promoter
28	LOC_Os03g33734	unknown	gene	unknown	chr3	19282277	19282836	-	promoter,downstream
28	LOC_Os08g08420	expressed protein	gene	expressed protein	chr8	4847764	4848725	-	promoter
28	LOC_Os08g27520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16788438	16790108	-	promoter
28	LOC_Os08g26960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16458825	16459481	-	promoter,downstream
28	LOC_Os02g18990	GDSL-like lipase/acylhydrolase, putative	gene	GDSL-like lipase/acylhydrolase, putative	chr2	11093807	11097790	+	promoter
28	LOC_Os01g58049	photosystem I assembly protein ycf4, putative, expressed	gene	photosystem I assembly protein ycf4, putative, expressed	chr1	33577148	33578087	+	promoter
28	LOC_Os06g29080	expressed protein	gene	expressed protein	chr6	16578009	16582088	-	promoter
28	LOC_Os04g18760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10407681	10412209	+	promoter,downstream
28	LOC_Os05g26150	hypothetical protein	gene	hypothetical protein	chr5	15160902	15161434	+	promoter,downstream
28	LOC_Os03g11860	hypothetical protein	gene	hypothetical protein	chr3	6211378	6215631	+	promoter
28	LOC_Os06g19050	embryogenesis transmembrane protein, putative	gene	embryogenesis transmembrane protein, putative	chr6	10830872	10833566	-	promoter
28	LOC_Os08g27600	hypothetical protein	gene	hypothetical protein	chr8	16823149	16823931	+	promoter,downstream
28	LOC_Os04g11610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6348238	6351023	+	promoter,downstream
28	LOC_Os08g23654	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14309324	14316929	+	promoter
28	LOC_Os09g01740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	517170	517709	+	promoter
28	LOC_Os12g01600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	363239	364726	-	promoter,downstream
28	LOC_Os12g21810	hypothetical protein	gene	hypothetical protein	chr12	12273945	12275854	-	promoter
28	LOC_Os05g27180	ligA, putative	gene	ligA, putative	chr5	15754185	15754685	-	promoter,downstream
28	LOC_Os04g14630	hypothetical protein	gene	hypothetical protein	chr4	8200507	8200788	-	promoter
28	LOC_Os01g47230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	26985812	26987618	-	promoter,downstream
28	LOC_Os04g20110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	11198611	11198853	-	promoter,downstream
28	LOC_Os06g33250	crooked neck, putative, expressed	gene	crooked neck, putative, expressed	chr6	19356235	19359928	+	promoter
28	LOC_Os06g15240	hypothetical protein	gene	hypothetical protein	chr6	8633908	8634504	-	promoter
28	LOC_Os10g02920	cytochrome b561, putative, expressed	gene	cytochrome b561, putative, expressed	chr10	1188789	1190765	-	promoter
28	LOC_Os01g46910	microneme protein Sm70, putative, expressed	gene	microneme protein Sm70, putative, expressed	chr1	26766627	26768146	-	promoter
28	LOC_Os07g16700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9792310	9794766	+	promoter,downstream
28	LOC_Os03g41950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23298296	23300791	+	promoter,downstream
28	LOC_Os09g14840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8844290	8845939	-	promoter
28	LOC_Os06g21040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12151118	12155674	+	promoter,downstream
28	LOC_Os06g14740	NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed	gene	NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed	chr6	8300781	8315933	+	promoter
28	LOC_Os01g25930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14706794	14708038	+	promoter
28	LOC_Os08g24590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14868353	14872077	+	promoter
28	LOC_Os11g01320	expressed protein	gene	expressed protein	chr11	173253	179087	+	promoter
28	LOC_Os10g16974	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr10	8423110	8433191	+	promoter
28	LOC_Os08g27560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16800723	16801187	+	promoter,downstream
28	LOC_Os07g05800	glutathione S-transferase, N-terminal domain containing protein, expressed	gene	glutathione S-transferase, N-terminal domain containing protein, expressed	chr7	2790451	2791558	+	promoter
28	LOC_Os12g38610	lectin-like receptor kinase, putative, expressed	gene	lectin-like receptor kinase, putative, expressed	chr12	23683489	23686084	-	promoter
28	LOC_Os06g44830	hypothetical protein	gene	hypothetical protein	chr6	27081760	27082020	+	promoter
28	LOC_Os06g39990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23788041	23790187	+	promoter
28	LOC_Os05g17780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10215201	10220156	+	promoter,downstream
28	LOC_Os05g09510	hypothetical protein	gene	hypothetical protein	chr5	5351948	5353030	-	promoter
28	LOC_Os06g26210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15328732	15331084	-	promoter,downstream
28	LOC_Os05g23100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13112130	13112421	-	promoter,downstream
28	LOC_Os07g12510	AP2 domain containing protein, expressed	gene	AP2 domain containing protein, expressed	chr7	7138571	7139780	-	promoter,downstream
28	LOC_Os03g33970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19380651	19381448	-	promoter,downstream
28	LOC_Os06g01070	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	49099	49641	+	promoter
28	LOC_Os05g28300	expressed protein	gene	expressed protein	chr5	16509023	16520477	+	promoter
28	LOC_Os01g34130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18794364	18794696	-	promoter,downstream
28	LOC_Os06g30980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18022967	18025688	+	promoter
28	LOC_Os04g11720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6415979	6418886	-	promoter,downstream
28	LOC_Os09g02900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1356426	1358374	+	promoter,downstream
28	LOC_Os02g14948	unknown	gene	unknown	chr2	8348912	8349208	+	promoter
28	LOC_Os10g16790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8290910	8291551	-	promoter,downstream
28	LOC_Os02g44530	expressed protein	gene	expressed protein	chr2	26969892	26972755	-	promoter
28	LOC_Os11g22180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12262988	12264274	-	promoter,downstream
28	LOC_Os07g25650	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	14701518	14707895	-	promoter,downstream
28	LOC_Os01g27090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15106318	15109622	-	promoter
28	LOC_Os09g21530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13027416	13028164	-	promoter
28	LOC_Os04g19450	hypothetical protein	gene	hypothetical protein	chr4	10830064	10830857	+	promoter
28	LOC_Os09g19270	hypothetical protein	gene	hypothetical protein	chr9	11514924	11517242	+	promoter
28	LOC_Os01g31440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17191912	17193134	+	promoter,downstream
28	LOC_Os12g12620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6955174	6956448	-	promoter,downstream
28	LOC_Os02g33380	pectinesterase inhibitor domain containing protein, putative, expressed	gene	pectinesterase inhibitor domain containing protein, putative, expressed	chr2	19828413	19829271	+	promoter
28	LOC_Os09g06160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2889657	2890524	+	promoter,downstream
28	LOC_Os04g24540	hypothetical protein	gene	hypothetical protein	chr4	14068715	14069188	-	promoter,downstream
28	LOC_Os06g26170	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15310053	15311897	+	promoter
28	LOC_Os04g22050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12475110	12476708	-	promoter
28	LOC_Os06g17170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9952741	9955437	-	promoter
28	LOC_Os04g20249	unknown	gene	unknown	chr4	11291422	11292065	-	promoter
28	LOC_Os12g16400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9382878	9386593	+	promoter
28	LOC_Os02g16150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9187695	9188768	-	promoter,downstream
28	LOC_Os12g22060	expressed protein	gene	expressed protein	chr12	12412580	12415353	-	promoter,downstream
28	LOC_Os10g36470	peptidase, M24 family protein, putative, expressed	gene	peptidase, M24 family protein, putative, expressed	chr10	19441087	19445347	+	promoter
28	LOC_Os05g25090	hypothetical protein	gene	hypothetical protein	chr5	14466715	14467776	-	promoter,downstream
28	LOC_Os08g05010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	2565658	2567239	-	promoter
28	LOC_Os09g12710	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr9	7270228	7275920	+	promoter
28	LOC_Os08g08530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4914216	4915378	-	promoter
28	LOC_Os09g21970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13297091	13298503	-	promoter,downstream
28	LOC_Os02g24410	hypothetical protein	gene	hypothetical protein	chr2	14146692	14147775	-	promoter,downstream
28	LOC_Os01g28910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16195904	16197206	+	promoter,downstream
28	LOC_Os02g14240	hypothetical protein	gene	hypothetical protein	chr2	7807964	7808868	+	promoter,downstream
28	LOC_Os12g23890	expressed protein	gene	expressed protein	chr12	13579956	13580287	-	promoter
28	LOC_Os07g06250	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	3035380	3035901	+	promoter
28	LOC_Os08g13259	unknown	gene	unknown	chr8	7888687	7889798	+	promoter
28	LOC_Os08g36370	hypothetical protein	gene	hypothetical protein	chr8	22918704	22922451	+	promoter
28	LOC_Os03g39940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	22196402	22198628	-	promoter
28	LOC_Os06g12230	TCP-domain protein, putative, expressed	gene	TCP-domain protein, putative, expressed	chr6	6569779	6571728	+	promoter
28	LOC_Os12g28510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16842993	16844238	+	promoter
28	LOC_Os02g22200	hypothetical protein	gene	hypothetical protein	chr2	13231476	13231748	+	promoter
28	LOC_Os01g28540	stress regulated protein, putative, expressed	gene	stress regulated protein, putative, expressed	chr1	15974298	15979598	+	promoter
28	LOC_Os08g14180	flavonol sulfotransferase, putative	gene	flavonol sulfotransferase, putative	chr8	8463917	8468514	+	promoter
28	LOC_Os07g42550	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	25457466	25458677	-	promoter,downstream
28	LOC_Os11g16710	hypothetical protein	gene	hypothetical protein	chr11	9255198	9255971	-	promoter,downstream
28	LOC_Os04g01390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	280280	281578	+	promoter,downstream
28	LOC_Os12g06490	STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	gene	STE_PAK_Ste20_Slob_Wnk.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	chr12	3127501	3130910	-	promoter
28	LOC_Os11g14760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8308604	8310297	-	promoter,downstream
28	LOC_Os02g30010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17823875	17826522	-	promoter,downstream
28	LOC_Os04g18820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10454745	10456367	-	promoter,downstream
28	LOC_Os03g09960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	4969393	4970016	-	promoter
28	LOC_Os01g27520	tRNA synthetases class II domain containing protein, expressed	gene	tRNA synthetases class II domain containing protein, expressed	chr1	15355753	15359658	-	promoter
28	LOC_Os01g27330	hypothetical protein	gene	hypothetical protein	chr1	15252515	15253883	-	promoter
28	LOC_Os06g40250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	23976459	23979013	+	promoter,downstream
28	LOC_Os03g25434	hypothetical protein	gene	hypothetical protein	chr3	14539713	14541852	+	promoter
28	LOC_Os05g09080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	5043556	5050292	+	promoter,downstream
28	LOC_Os01g64160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	37263519	37266851	-	promoter
28	LOC_Os07g33530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20035589	20037156	+	promoter
28	LOC_Os04g11330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6179863	6182439	-	promoter,downstream
28	LOC_Os08g21020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12570447	12571574	+	promoter,downstream
28	LOC_Os05g37330	60S acidic ribosomal protein, putative, expressed	gene	60S acidic ribosomal protein, putative, expressed	chr5	21772857	21775125	+	promoter
28	LOC_Os04g45560	hypothetical protein	gene	hypothetical protein	chr4	26768269	26768778	+	promoter
28	LOC_Os12g15170	hypothetical protein	gene	hypothetical protein	chr12	8647096	8647419	-	promoter
28	LOC_Os11g22280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12310586	12311548	-	promoter,downstream
28	LOC_Os06g27590	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15610977	15611819	-	promoter,downstream
28	LOC_Os06g23180	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	13537871	13539417	+	promoter
28	LOC_Os10g07030	hypothetical protein	gene	hypothetical protein	chr10	3682807	3684779	-	promoter
28	LOC_Os07g29150	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	17066096	17067052	-	promoter,downstream
28	LOC_Os05g18419	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10651452	10651957	+	promoter,downstream
28	LOC_Os11g23990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13133206	13134261	+	promoter,downstream
28	LOC_Os06g01130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	111046	112893	-	promoter,downstream
28	LOC_Os09g20130	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	12059630	12061803	+	promoter
28	LOC_Os05g48444	hypothetical protein	gene	hypothetical protein	chr5	27715052	27716424	-	promoter
28	LOC_Os06g45820	OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed	gene	OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed	chr6	27723567	27727318	-	promoter
28	LOC_Os11g26660	hypothetical protein	gene	hypothetical protein	chr11	14804843	14805223	-	promoter,downstream
28	LOC_Os06g33780	hypothetical protein	gene	hypothetical protein	chr6	19649617	19651042	+	promoter,downstream
28	LOC_Os06g27650	expressed protein	gene	expressed protein	chr6	15647700	15658327	+	promoter
28	LOC_Os04g53280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	31548926	31555015	-	promoter
28	LOC_Os06g36630	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	21519844	21520536	+	promoter,downstream
28	LOC_Os06g09160	hypothetical protein	gene	hypothetical protein	chr6	4606807	4607109	+	promoter
28	LOC_Os06g10730	expressed protein	gene	expressed protein	chr6	5600749	5603985	+	promoter
28	LOC_Os01g36320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20140236	20142203	-	promoter
28	LOC_Os11g09950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5327843	5328863	+	promoter,downstream
28	LOC_Os12g31300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18806088	18808337	+	promoter,downstream
28	LOC_Os02g29620	expressed protein	gene	expressed protein	chr2	17611871	17613542	+	promoter
28	LOC_Os07g11500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6327542	6330067	-	promoter
28	LOC_Os03g32360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18510954	18512364	+	promoter,downstream
28	LOC_Os05g32060	expressed protein	gene	expressed protein	chr5	18618228	18622927	+	promoter
28	LOC_Os01g34300	hypothetical protein	gene	hypothetical protein	chr1	18906446	18906854	+	promoter
28	LOC_Os01g32980	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr1	18100505	18110302	-	promoter
28	LOC_Os02g32870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19515861	19518461	+	promoter
28	LOC_Os07g12750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7288960	7289610	-	promoter,downstream
28	LOC_Os10g40550	CPuORF23 - conserved peptide uORF-containing transcript, expressed	gene	CPuORF23 - conserved peptide uORF-containing transcript, expressed	chr10	21635387	21639455	-	promoter
28	LOC_Os06g08840	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr6	4427667	4431337	+	promoter,downstream
28	LOC_Os08g40780	hypothetical protein	gene	hypothetical protein	chr8	25791639	25794061	-	promoter
28	LOC_Os04g21530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12166287	12167640	+	promoter
28	LOC_Os03g23090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13349111	13350805	+	promoter
28	LOC_Os09g27140	expressed protein	gene	expressed protein	chr9	16502936	16507818	-	promoter
28	LOC_Os12g26000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15095995	15096339	-	promoter,downstream
28	LOC_Os03g35440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19645999	19648127	-	promoter,downstream
28	LOC_Os05g33880	cysteine proteinase inhibitor precursor protein, putative, expressed	gene	cysteine proteinase inhibitor precursor protein, putative, expressed	chr5	19921235	19925189	+	promoter
28	LOC_Os10g02020	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	642795	643232	+	promoter,downstream
28	LOC_Os04g25000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14404301	14406701	+	promoter,downstream
28	LOC_Os08g35830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22590699	22595568	+	promoter,downstream
28	LOC_Os01g37760	glutamate dehydrogenase protein, putative, expressed	gene	glutamate dehydrogenase protein, putative, expressed	chr1	21117849	21123727	+	promoter
28	LOC_Os05g24270	PPR repeat domain containing protein, putative	gene	PPR repeat domain containing protein, putative	chr5	13975294	13975668	+	promoter
28	LOC_Os01g71540	expressed protein	gene	expressed protein	chr1	41438252	41446481	+	promoter
28	LOC_Os03g33230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18997198	19002961	-	promoter
28	LOC_Os03g22310	hypothetical protein	gene	hypothetical protein	chr3	12785239	12786779	+	promoter
28	LOC_Os11g28060	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr11	15664256	15665452	-	promoter
28	LOC_Os03g34240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19494341	19497181	+	promoter
28	LOC_Os03g41580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	23121547	23122081	-	promoter
28	LOC_Os09g06280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2945374	2945856	+	promoter,downstream
28	LOC_Os04g13840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7714144	7716216	-	promoter,downstream
28	LOC_Os08g28400	expressed protein	gene	expressed protein	chr8	17317823	17320524	-	promoter
28	LOC_Os03g21370	expressed protein	gene	expressed protein	chr3	12218542	12221955	+	promoter
28	LOC_Os05g30210	expressed protein	gene	expressed protein	chr5	17446304	17450405	+	promoter
28	LOC_Os06g30120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17364608	17365698	+	promoter,downstream
28	LOC_Os03g59640	magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed	gene	magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed	chr3	33948068	33954832	+	promoter
28	LOC_Os03g02630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	967221	969793	+	promoter,downstream
28	LOC_Os01g36160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19993755	19998619	-	promoter,downstream
28	LOC_Os06g45280	protein kinase APK1B, chloroplast precursor, putative, expressed	gene	protein kinase APK1B, chloroplast precursor, putative, expressed	chr6	27362819	27368248	-	promoter
28	LOC_Os03g36860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20451581	20453921	+	promoter,downstream
28	LOC_Os11g24500	expressed protein	gene	expressed protein	chr11	13505775	13507727	-	promoter
28	LOC_Os04g20800	pumilio domain-containing protein, putative	gene	pumilio domain-containing protein, putative	chr4	11664103	11665700	+	promoter
28	LOC_Os04g12400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6840444	6843776	-	promoter
28	LOC_Os01g35970	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr1	19902142	19905352	+	promoter
28	LOC_Os12g43200	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	26787221	26787580	+	promoter,downstream
28	LOC_Os12g17020	hypothetical protein	gene	hypothetical protein	chr12	9734700	9735068	+	promoter,downstream
28	LOC_Os05g07910	hypothetical protein	gene	hypothetical protein	chr5	4283823	4284897	-	promoter,downstream
28	LOC_Os07g29040	hypothetical protein	gene	hypothetical protein	chr7	17027749	17028238	+	promoter
28	LOC_Os07g25930	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14881047	14882073	+	promoter
28	LOC_Os12g01449	chloroplast unusual positioning protein, putative, expressed	gene	chloroplast unusual positioning protein, putative, expressed	chr12	272546	281070	-	promoter
28	LOC_Os02g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13491955	13492290	-	promoter,downstream
28	LOC_Os04g10600	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	5752272	5752829	+	promoter,downstream
28	LOC_Os09g11080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6148900	6149765	+	promoter
28	LOC_Os01g16110	la domain containing protein, putative, expressed	gene	la domain containing protein, putative, expressed	chr1	9073613	9082795	+	promoter
28	LOC_Os04g16330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8862646	8863505	-	promoter,downstream
28	LOC_Os02g22320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13330812	13331648	+	promoter,downstream
28	LOC_Os02g44170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	26732274	26732945	+	promoter,downstream
28	LOC_Os03g50690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	28936620	28937804	-	promoter
28	LOC_Os10g20200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10073634	10075058	+	promoter,downstream
28	LOC_Os12g33120	expressed protein	gene	expressed protein	chr12	20013727	20014556	+	promoter
28	LOC_Os02g08300	RAD23 DNA repair protein, putative, expressed	gene	RAD23 DNA repair protein, putative, expressed	chr2	4407943	4412802	+	promoter
28	LOC_Os08g12870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7629281	7632978	+	promoter
28	LOC_Os03g33319	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19055152	19057576	+	promoter
28	LOC_Os04g56610	expressed protein	gene	expressed protein	chr4	33570460	33570753	+	promoter
28	LOC_Os06g34490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	20074934	20075926	+	promoter,downstream
28	LOC_Os05g27390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15863496	15865052	+	promoter
28	LOC_Os04g30750	expressed protein	gene	expressed protein	chr4	18205960	18208346	+	promoter
28	LOC_Os02g08260	HD domain containing protein 2, putative, expressed	gene	HD domain containing protein 2, putative, expressed	chr2	4384185	4388039	+	promoter
28	LOC_Os10g20220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10079141	10082002	-	promoter
28	LOC_Os01g27410	hypothetical protein	gene	hypothetical protein	chr1	15298751	15299047	+	promoter,downstream
28	LOC_Os05g19080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11073129	11075991	+	promoter,downstream
28	LOC_Os02g02200	thaumatin, putative	gene	thaumatin, putative	chr2	676466	677742	+	promoter
28	LOC_Os05g50050	keratin, type I cytoskeletal 50 kDa, putative	gene	keratin, type I cytoskeletal 50 kDa, putative	chr5	28626910	28627479	-	promoter
28	LOC_Os05g23080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13098437	13105170	+	promoter,downstream
28	LOC_Os08g17100	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	10463742	10465285	+	promoter
28	LOC_Os03g39510	hypothetical protein	gene	hypothetical protein	chr3	21942807	21943133	+	promoter
28	LOC_Os12g23490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13279200	13283186	+	promoter,downstream
28	LOC_Os07g44230	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed	gene	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed	chr7	26431707	26434263	+	promoter
28	LOC_Os05g34790	GYF domain containing protein, putative	gene	GYF domain containing protein, putative	chr5	20582149	20586141	+	promoter
28	LOC_Os09g20620	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr9	12423144	12424987	-	promoter,downstream
28	LOC_Os04g18960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10526605	10527318	-	promoter,downstream
28	LOC_Os05g49930	GRAS family transcription factor domain containing protein, expressed	gene	GRAS family transcription factor domain containing protein, expressed	chr5	28577617	28579365	+	promoter,downstream
28	LOC_Os04g25760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14931264	14932208	+	promoter
28	LOC_Os01g29180	expressed protein	gene	expressed protein	chr1	16345946	16348535	-	promoter
28	LOC_Os08g17950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11009973	11010461	-	promoter,downstream
28	LOC_Os02g07260	phosphoglycerate kinase protein, putative, expressed	gene	phosphoglycerate kinase protein, putative, expressed	chr2	3727491	3731346	+	promoter
28	LOC_Os08g20260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12159372	12161839	+	promoter,downstream
28	LOC_Os10g39440	transporter family protein, putative, expressed	gene	transporter family protein, putative, expressed	chr10	20976750	20981273	+	promoter
28	LOC_Os05g20720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12156032	12159738	-	promoter,downstream
28	LOC_Os04g48640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28796685	28803330	-	promoter,downstream
28	LOC_Os08g06860	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	3827757	3829320	+	promoter
28	LOC_Os04g01270	hypothetical protein	gene	hypothetical protein	chr4	206701	207487	-	promoter
28	LOC_Os07g17350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10242054	10244228	-	promoter
28	LOC_Os11g12220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	6810933	6813215	+	promoter,downstream
28	LOC_Os06g10840	hypothetical protein	gene	hypothetical protein	chr6	5652539	5652943	-	promoter
28	LOC_Os01g03590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	1456947	1458982	+	promoter,downstream
28	LOC_Os03g62360	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	35322880	35323512	-	promoter
28	LOC_Os09g25350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15189230	15190075	+	promoter,downstream
28	LOC_Os06g38550	expressed protein	gene	expressed protein	chr6	22835857	22838543	+	promoter
28	LOC_Os12g24480	hypothetical protein	gene	hypothetical protein	chr12	13974921	13977301	+	promoter
28	LOC_Os05g08120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4421333	4423784	-	promoter,downstream
28	LOC_Os02g54750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	33520186	33520692	-	promoter
28	LOC_Os10g20210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10075976	10076666	-	promoter,downstream
28	LOC_Os06g38056	expressed protein	gene	expressed protein	chr6	22501206	22501825	-	promoter
28	LOC_Os05g18090	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	10404164	10407500	+	promoter,downstream
28	LOC_Os02g24790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14377756	14383849	+	promoter
28	LOC_Os05g37860	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	22112177	22114192	-	promoter
28	LOC_Os07g34490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	20671263	20672088	+	promoter
28	LOC_Os10g14140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	7688621	7689367	-	promoter
28	LOC_Os09g25300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	15143153	15146964	-	promoter,downstream
28	LOC_Os06g31340	hypothetical protein	gene	hypothetical protein	chr6	18237097	18237378	-	promoter
28	LOC_Os09g25679	unknown	gene	unknown	chr9	15418768	15419206	-	promoter,downstream
28	LOC_Os04g27330	hypothetical protein	gene	hypothetical protein	chr4	15977971	15978450	-	promoter
28	LOC_Os01g24320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13702899	13703342	+	promoter
28	LOC_Os07g16820	hypothetical protein	gene	hypothetical protein	chr7	9875832	9876053	+	promoter
28	LOC_Os09g04220	expressed protein	gene	expressed protein	chr9	2225332	2228722	+	promoter
28	LOC_Os04g24790	OsMADS81 - MADS-box family gene with M-gamma type-box, expressed	gene	OsMADS81 - MADS-box family gene with M-gamma type-box, expressed	chr4	14230350	14231008	+	promoter
28	LOC_Os03g47570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	26893201	26896009	-	promoter,downstream
28	LOC_Os08g25970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15797886	15804111	+	promoter
28	LOC_Os02g02070	hypothetical protein	gene	hypothetical protein	chr2	607541	608879	+	promoter
28	LOC_Os07g06720	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	3278039	3280314	-	promoter,downstream
28	LOC_Os10g12240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6831693	6835146	+	promoter,downstream
28	LOC_Os12g21680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12177390	12180278	-	promoter,downstream
28	LOC_Os03g23070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13332837	13338257	-	promoter,downstream
28	LOC_Os01g33040	kinesin motor domain containing protein, expressed	gene	kinesin motor domain containing protein, expressed	chr1	18149848	18156798	+	promoter
28	LOC_Os02g17570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10108866	10109930	+	promoter
28	LOC_Os10g11530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6402018	6404239	-	promoter,downstream
28	LOC_Os09g22360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13508239	13514349	-	promoter
28	LOC_Os09g02890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1353909	1355501	-	promoter,downstream
28	LOC_Os12g18270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10543440	10544168	-	promoter,downstream
28	LOC_Os04g23980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13697038	13697514	-	promoter
28	LOC_Os05g02310	soluble inorganic pyrophosphatase, putative, expressed	gene	soluble inorganic pyrophosphatase, putative, expressed	chr5	739646	742966	-	promoter
28	LOC_Os05g15660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8857315	8859824	+	promoter
28	LOC_Os11g38830	PE-PGRS family protein, putative	gene	PE-PGRS family protein, putative	chr11	22631174	22631659	-	promoter,downstream
28	LOC_Os09g40000	AGAP005770-PA, putative, expressed	gene	AGAP005770-PA, putative, expressed	chr9	22933500	22938707	+	promoter
28	LOC_Os05g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14039595	14040365	+	promoter,downstream
28	LOC_Os11g42680	NBS-LRR type disease resistance protein, putative	gene	NBS-LRR type disease resistance protein, putative	chr11	25242719	25243432	+	promoter
28	LOC_Os05g37270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	21743606	21749761	+	promoter
28	LOC_Os02g22680	integral membrane protein DUF6 containing protein, expressed	gene	integral membrane protein DUF6 containing protein, expressed	chr2	13505260	13507432	-	promoter
28	LOC_Os12g31580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18977485	18978024	+	promoter,downstream
28	LOC_Os10g40780	CCR4-Not complex component, Not1domain containing protein, expressed	gene	CCR4-Not complex component, Not1domain containing protein, expressed	chr10	21812892	21832062	-	promoter,downstream
28	LOC_Os01g38160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21372168	21374455	-	promoter
28	LOC_Os05g20430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11982928	11990774	-	promoter
28	LOC_Os04g16290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8846266	8847003	+	promoter,downstream
28	LOC_Os07g24950	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	14193239	14193574	-	promoter
28	LOC_Os02g20070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11817440	11819648	+	promoter,downstream
28	LOC_Os03g23780	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	13476264	13481888	+	promoter
28	LOC_Os04g53820	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr4	31883334	31891015	+	promoter
28	LOC_Os11g16320	expressed protein	gene	expressed protein	chr11	8995095	8999607	+	promoter
28	LOC_Os01g57790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	33422019	33425679	+	promoter,downstream
28	LOC_Os06g25240	expressed protein	gene	expressed protein	chr6	14765579	14766206	+	promoter,downstream
28	LOC_Os02g33620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	20011225	20016260	+	promoter
28	LOC_Os05g15990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9026493	9032603	-	promoter
28	LOC_Os05g17730	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	10195494	10196000	+	promoter,downstream
28	LOC_Os11g25900	hAT dimerisation domain containing protein, putative	gene	hAT dimerisation domain containing protein, putative	chr11	14311676	14312839	+	promoter
28	LOC_Os12g02180	hypothetical protein	gene	hypothetical protein	chr12	673082	675628	-	promoter
28	LOC_Os10g21720	hypothetical protein	gene	hypothetical protein	chr10	11075881	11078380	-	promoter,downstream
28	LOC_Os05g19780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11536916	11538665	+	promoter,downstream
28	LOC_Os08g37240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	23537169	23537813	-	promoter
28	LOC_Os01g34040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18734645	18740679	-	promoter
28	LOC_Os10g07060	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr10	3715395	3716226	+	promoter
28	LOC_Os03g24090	hypothetical protein	gene	hypothetical protein	chr3	13674702	13675783	+	promoter
28	LOC_Os01g37720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21093833	21094720	+	promoter,downstream
28	LOC_Os01g64960	chlorophyll A-B binding protein, putative, expressed	gene	chlorophyll A-B binding protein, putative, expressed	chr1	37695735	37698709	+	promoter
28	LOC_Os02g20030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11795827	11796300	-	promoter,downstream
28	LOC_Os11g24470	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr11	13489461	13490128	-	promoter
28	LOC_Os10g18350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9247987	9251539	+	promoter,downstream
28	LOC_Os10g26200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	13495453	13496298	+	promoter
28	LOC_Os05g43640	retrotransposon, putative, centromere-specific, expressed	gene	retrotransposon, putative, centromere-specific, expressed	chr5	25314357	25317491	+	promoter
28	LOC_Os04g26030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15132449	15136832	+	promoter
28	LOC_Os08g28390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17311185	17312902	-	promoter,downstream
28	LOC_Os09g17500	hypothetical protein	gene	hypothetical protein	chr9	10705444	10705851	-	promoter,downstream
28	LOC_Os09g08799	unknown	gene	unknown	chr9	4640262	4640532	-	promoter
28	LOC_Os10g16960	hypothetical protein	gene	hypothetical protein	chr10	8419607	8420068	+	promoter,downstream
28	LOC_Os02g18210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10573155	10576864	-	promoter,downstream
28	LOC_Os05g18230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10481077	10487687	-	promoter,downstream
28	LOC_Os07g06780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	3308108	3311812	-	promoter
28	LOC_Os12g25610	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	14819296	14820579	-	promoter
28	LOC_Os12g25260	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	14528246	14529435	+	promoter
28	LOC_Os03g29900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	17030789	17034100	-	promoter
28	LOC_Os01g43580	kinesin motor domain containing protein, putative, expressed	gene	kinesin motor domain containing protein, putative, expressed	chr1	24957467	24961806	+	promoter
28	LOC_Os04g57070	jasmonate O-methyltransferase, putative	gene	jasmonate O-methyltransferase, putative	chr4	33828981	33830643	+	promoter
28	LOC_Os01g32430	hypothetical protein	gene	hypothetical protein	chr1	17788708	17789256	+	promoter
28	LOC_Os04g19030	hypothetical protein	gene	hypothetical protein	chr4	10561004	10561333	+	promoter
28	LOC_Os07g23820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13452435	13455699	+	promoter
28	LOC_Os01g31124	hypothetical protein	gene	hypothetical protein	chr1	17023685	17024586	+	promoter,downstream
28	LOC_Os03g44130	expressed protein	gene	expressed protein	chr3	24790724	24792596	-	promoter
28	LOC_Os04g34640	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	20785240	20786405	-	promoter
28	LOC_Os03g47580	ubiquitin-conjugating enzyme, putative, expressed	gene	ubiquitin-conjugating enzyme, putative, expressed	chr3	26909226	26917696	-	promoter
28	LOC_Os04g07400	hypothetical protein	gene	hypothetical protein	chr4	3934693	3935721	+	promoter,downstream
28	LOC_Os04g02380	hypothetical protein	gene	hypothetical protein	chr4	854926	856145	-	promoter
28	LOC_Os05g50070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28632342	28634325	-	promoter
28	LOC_Os04g22070	hypothetical protein	gene	hypothetical protein	chr4	12486187	12487942	-	promoter
28	LOC_Os06g32674	hypothetical protein	gene	hypothetical protein	chr6	19000926	19003322	+	promoter,downstream
28	LOC_Os06g12020	membrane-anchored ubiquitin-fold protein, putative, expressed	gene	membrane-anchored ubiquitin-fold protein, putative, expressed	chr6	6434825	6438823	+	promoter
28	LOC_Os06g35370	polygalacturonase, putative, expressed	gene	polygalacturonase, putative, expressed	chr6	20620178	20621859	-	promoter
28	LOC_Os06g49730	hypothetical protein	gene	hypothetical protein	chr6	30083830	30084117	+	promoter
28	LOC_Os05g08590	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	4702906	4703277	+	promoter
28	LOC_Os09g07900	ubiquitin-protein ligase 1, putative, expressed	gene	ubiquitin-protein ligase 1, putative, expressed	chr9	4015486	4035019	+	promoter
28	LOC_Os02g28770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17015988	17019519	+	promoter,downstream
28	LOC_Os12g29040	LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor	gene	LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor	chr12	17189623	17191235	-	promoter,downstream
28	LOC_Os10g18780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9476647	9477744	-	promoter
28	LOC_Os08g15880	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr8	9664861	9670384	-	promoter
28	LOC_Os04g27640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16167029	16168528	-	promoter
28	LOC_Os10g06020	hypothetical protein	gene	hypothetical protein	chr10	3052563	3053248	-	promoter
28	LOC_Os05g17950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10315850	10317418	+	promoter,downstream
28	LOC_Os07g18480	hypothetical protein	gene	hypothetical protein	chr7	10933424	10933769	+	promoter
28	LOC_Os04g54660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32332159	32337049	+	promoter
28	LOC_Os07g35190	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	21072182	21072727	+	promoter
28	LOC_Os11g36310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20917047	20917673	-	promoter,downstream
28	LOC_Os02g46830	expressed protein	gene	expressed protein	chr2	28572445	28573307	+	promoter
28	LOC_Os12g05151	hypothetical protein	gene	hypothetical protein	chr12	2272631	2272884	-	promoter
28	LOC_Os11g03770	hypothetical protein	gene	hypothetical protein	chr11	1480581	1481553	-	promoter
28	LOC_Os10g06270	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	3212224	3217796	+	promoter
28	LOC_Os04g19500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10850880	10852553	-	promoter
28	LOC_Os11g09170	hydrolase, acting on carbon-nitrogen, putative, expressed	gene	hydrolase, acting on carbon-nitrogen, putative, expressed	chr11	4914681	4919536	+	promoter
28	LOC_Os12g15300	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8721043	8721468	+	promoter,downstream
28	LOC_Os10g19150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9683191	9684050	+	promoter
28	LOC_Os12g19440	hypothetical protein	gene	hypothetical protein	chr12	11293171	11293621	-	promoter
28	LOC_Os12g30780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18451643	18452972	-	promoter,downstream
28	LOC_Os02g16830	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	9586005	9588014	-	promoter
28	LOC_Os11g25840	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	14267846	14268367	+	promoter
28	LOC_Os07g11690	hypothetical protein	gene	hypothetical protein	chr7	6467247	6467731	-	promoter
28	LOC_Os03g37240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20637219	20640148	+	promoter,downstream
28	LOC_Os04g13680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7628541	7630435	+	promoter
28	LOC_Os06g19530	oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed	gene	oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed	chr6	11115721	11117277	-	promoter
28	LOC_Os07g25320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14461705	14462851	+	promoter,downstream
28	LOC_Os03g56980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	32456130	32456846	+	promoter,downstream
28	LOC_Os05g39640	hypothetical protein	gene	hypothetical protein	chr5	23209635	23210113	+	promoter
28	LOC_Os03g25590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	14639449	14645643	-	promoter
28	LOC_Os09g13520	hypothetical protein	gene	hypothetical protein	chr9	7837204	7837970	+	promoter
28	LOC_Os05g28440	hypothetical protein	gene	hypothetical protein	chr5	16590290	16592350	-	promoter
28	LOC_Os02g32910	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	19536470	19537785	-	promoter,downstream
28	LOC_Os12g31310	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	18811539	18811971	+	promoter,downstream
28	LOC_Os10g09130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4953791	4955538	-	promoter
28	LOC_Os12g18700	expressed protein	gene	expressed protein	chr12	10804528	10806388	-	promoter
28	LOC_Os01g46640	hypothetical protein	gene	hypothetical protein	chr1	26558211	26559059	+	promoter,downstream
28	LOC_Os03g33890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19349211	19350171	-	promoter
28	LOC_Os03g40430	hypothetical protein	gene	hypothetical protein	chr3	22460796	22461422	-	promoter
28	LOC_Os04g05920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3059404	3061996	-	promoter,downstream
28	LOC_Os01g34800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19210496	19213849	+	promoter,downstream
28	LOC_Os12g37450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	22951098	22954310	+	promoter,downstream
28	LOC_Os08g21300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12704769	12706557	+	promoter
28	LOC_Os01g36030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19932824	19933597	-	promoter
28	LOC_Os06g25820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15083183	15085207	-	promoter
28	LOC_Os04g28200	Rf1, mitochondrial precursor, putative, expressed	gene	Rf1, mitochondrial precursor, putative, expressed	chr4	16489838	16492533	+	promoter
28	LOC_Os04g19600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10910536	10911609	-	promoter
28	LOC_Os02g18250	hypothetical protein	gene	hypothetical protein	chr2	10591598	10591849	+	promoter
28	LOC_Os02g28750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17006517	17006801	+	promoter
28	LOC_Os08g36350	hypothetical protein	gene	hypothetical protein	chr8	22913369	22913740	+	promoter,downstream
28	LOC_Os05g30550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17640796	17643973	+	promoter
28	LOC_Os01g32000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17519532	17521408	+	promoter,downstream
28	LOC_Os05g15140	expressed protein	gene	expressed protein	chr5	8584489	8589414	-	promoter
28	LOC_Os12g35209	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21372374	21375033	+	promoter
28	LOC_Os10g38402	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	20443757	20450419	+	promoter,downstream
28	LOC_Os05g26610	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	15404510	15405124	+	promoter,downstream
28	LOC_Os08g32570	expressed protein	gene	expressed protein	chr8	20168481	20171959	+	promoter,downstream
28	LOC_Os08g23360	signal recognition particle 68 kDa protein, putative, expressed	gene	signal recognition particle 68 kDa protein, putative, expressed	chr8	14103393	14115037	-	promoter
28	LOC_Os06g47080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	28539405	28540139	-	promoter,downstream
28	LOC_Os11g19880	O-methyltransferase, putative	gene	O-methyltransferase, putative	chr11	11446030	11450860	-	promoter
28	LOC_Os07g20110	expressed protein	gene	expressed protein	chr7	11618081	11619982	+	promoter
28	LOC_Os06g27620	hypothetical protein	gene	hypothetical protein	chr6	15626840	15627547	-	promoter
28	LOC_Os11g31770	expressed protein	gene	expressed protein	chr11	18170245	18184695	+	promoter
28	LOC_Os11g23950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13104219	13104431	+	promoter,downstream
28	LOC_Os02g26430	OsWRKY42 - Superfamily of TFs having WRKY and zinc finger domains, expressed	gene	OsWRKY42 - Superfamily of TFs having WRKY and zinc finger domains, expressed	chr2	15515627	15516854	+	promoter
28	LOC_Os04g07300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3870203	3876312	-	promoter
28	LOC_Os09g09160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4900033	4903323	-	promoter,downstream
28	LOC_Os03g40880	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	22729092	22731456	-	promoter,downstream
28	LOC_Os03g59910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	34091142	34091547	+	promoter,downstream
28	LOC_Os04g19520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10862303	10863149	+	promoter,downstream
28	LOC_Os10g17290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8628241	8629535	+	promoter,downstream
28	LOC_Os03g25170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14391875	14392558	-	promoter
28	LOC_Os11g27680	hypothetical protein	gene	hypothetical protein	chr11	15471060	15471329	+	promoter
28	LOC_Os12g30890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18523843	18525192	+	promoter,downstream
28	LOC_Os04g11800	hypothetical protein	gene	hypothetical protein	chr4	6460637	6462023	+	promoter,downstream
28	LOC_Os02g15400	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	8609564	8611244	+	promoter
28	LOC_Os01g21220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11839946	11842208	-	promoter
28	LOC_Os08g18159	unknown	gene	unknown	chr8	11132883	11134123	-	promoter
28	LOC_Os06g15610	hypothetical protein	gene	hypothetical protein	chr6	8845792	8846093	-	promoter
28	LOC_Os04g18710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10365692	10366417	-	promoter,downstream
28	LOC_Os01g01460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	231377	231688	-	promoter,downstream
28	LOC_Os05g26690	PROLM15 - Prolamin precursor, putative, expressed	gene	PROLM15 - Prolamin precursor, putative, expressed	chr5	15445034	15445495	-	promoter,downstream
28	LOC_Os10g16670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8242091	8245475	-	promoter,downstream
28	LOC_Os08g07820	hypothetical protein	gene	hypothetical protein	chr8	4377188	4378266	+	promoter
28	LOC_Os06g15880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9016524	9017637	+	promoter,downstream
28	LOC_Os07g16410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9612929	9614726	+	promoter
28	LOC_Os09g07800	expressed protein	gene	expressed protein	chr9	3948844	3952272	+	promoter
28	LOC_Os02g25200	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	14652906	14653725	+	promoter,downstream
28	LOC_Os03g31370	glycine-rich protein, putative	gene	glycine-rich protein, putative	chr3	17870965	17871924	+	promoter
28	LOC_Os11g21820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12061488	12063044	-	promoter
28	LOC_Os09g13970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8227447	8230159	+	promoter,downstream
28	LOC_Os04g26070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15153568	15157229	+	promoter
28	LOC_Os01g66780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	38776998	38778022	+	promoter
28	LOC_Os05g26420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15303290	15307069	-	promoter,downstream
28	LOC_Os09g07340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	3649452	3652733	-	promoter,downstream
28	LOC_Os09g27640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16798951	16800494	-	promoter
28	LOC_Os12g34920	csAtPR5, putative, expressed	gene	csAtPR5, putative, expressed	chr12	21220560	21223932	+	promoter
28	LOC_Os08g24270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14643440	14649487	-	promoter,downstream
28	LOC_Os09g14380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8493471	8494840	-	promoter,downstream
28	LOC_Os04g10830	hypothetical protein	gene	hypothetical protein	chr4	5870512	5873077	-	promoter
28	LOC_Os06g37270	hypothetical protein	gene	hypothetical protein	chr6	22003133	22003506	+	promoter
28	LOC_Os02g19330	expressed protein	gene	expressed protein	chr2	11292517	11300300	-	promoter
28	LOC_Os06g35814	ras-related protein, putative, expressed	gene	ras-related protein, putative, expressed	chr6	20895030	20900719	-	promoter
28	LOC_Os12g30420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18224525	18225070	+	promoter,downstream
28	LOC_Os05g16040	hypothetical protein	gene	hypothetical protein	chr5	9055910	9058659	+	promoter
28	LOC_Os12g33790	ligA, putative	gene	ligA, putative	chr12	20354629	20355279	-	promoter,downstream
28	LOC_Os04g14910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8381016	8382169	-	promoter,downstream
28	LOC_Os02g04400	hypothetical protein	gene	hypothetical protein	chr2	1942710	1942973	+	promoter
28	LOC_Os09g06970	transport protein particle component, Bet3, domain containing protein, expressed	gene	transport protein particle component, Bet3, domain containing protein, expressed	chr9	3368499	3375004	+	promoter
28	LOC_Os03g14760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8023425	8026358	-	promoter
28	LOC_Os10g04160	hypothetical protein	gene	hypothetical protein	chr10	1931674	1932859	-	promoter
28	LOC_Os11g19454	hypothetical protein	gene	hypothetical protein	chr11	11194037	11195818	-	promoter
28	LOC_Os08g13830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8250529	8251111	+	promoter
28	LOC_Os05g24030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13795080	13798064	+	promoter
28	LOC_Os02g23829	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	13782297	13782713	-	promoter,downstream
28	LOC_Os01g70050	OsSAUR3 - Auxin-responsive SAUR gene family member	gene	OsSAUR3 - Auxin-responsive SAUR gene family member	chr1	40525548	40526069	-	promoter
28	LOC_Os12g43034	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26695297	26698037	-	promoter
28	LOC_Os12g29240	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr12	17311293	17311907	-	promoter,downstream
28	LOC_Os07g14560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8302002	8306375	+	promoter
28	LOC_Os03g29810	OsClp6 - Putative Clp protease homologue, expressed	gene	OsClp6 - Putative Clp protease homologue, expressed	chr3	16993142	16996616	+	promoter
28	LOC_Os01g21010	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	11726399	11729017	+	promoter
28	LOC_Os10g13660	hypothetical protein	gene	hypothetical protein	chr10	7427775	7429373	+	promoter
28	LOC_Os08g18940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	11293584	11299739	+	promoter
28	LOC_Os01g34610	expressed protein	gene	expressed protein	chr1	19078203	19082440	+	promoter
28	LOC_Os04g22040	hypothetical protein	gene	hypothetical protein	chr4	12472752	12473015	-	promoter,downstream
28	LOC_Os09g06480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3066362	3068573	-	promoter,downstream
28	LOC_Os10g04280	DNA-directed RNA polymerase II subunit RPB1, putative	gene	DNA-directed RNA polymerase II subunit RPB1, putative	chr10	2009976	2010857	+	promoter,downstream
28	LOC_Os09g09010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4801173	4801607	+	promoter,downstream
28	LOC_Os10g17000	hypothetical protein	gene	hypothetical protein	chr10	8443031	8443420	+	promoter,downstream
28	LOC_Os05g17410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9991363	9998011	+	promoter,downstream
28	LOC_Os07g17800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10527683	10534353	-	promoter,downstream
28	LOC_Os05g26580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15384226	15387625	+	promoter
28	LOC_Os08g11370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6682470	6683908	+	promoter,downstream
28	LOC_Os02g16520	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	9427302	9428320	-	promoter,downstream
28	LOC_Os02g46020	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	28029729	28030166	+	promoter,downstream
28	LOC_Os06g44570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	26913275	26915990	+	promoter,downstream
28	LOC_Os01g24900	hypothetical protein	gene	hypothetical protein	chr1	14025041	14025534	+	promoter,downstream
28	LOC_Os12g18100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	10402555	10406799	-	promoter,downstream
28	LOC_Os06g24390	hypothetical protein	gene	hypothetical protein	chr6	14278421	14278663	+	promoter
28	LOC_Os03g21620	AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed	gene	AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed	chr3	12338898	12343059	-	promoter
28	LOC_Os11g07340	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	3698852	3699721	+	promoter
28	LOC_Os11g20210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11670325	11670666	+	promoter,downstream
28	LOC_Os05g06540	expressed protein	gene	expressed protein	chr5	3368985	3372477	+	promoter
28	LOC_Os09g01340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	271602	277456	+	promoter,downstream
28	LOC_Os05g31990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18587594	18588708	+	promoter
28	LOC_Os01g40910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23136440	23141605	+	promoter,downstream
28	LOC_Os10g06480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3332679	3334391	+	promoter,downstream
28	LOC_Os10g12450	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	6942597	6942946	-	promoter
28	LOC_Os05g31590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	18329768	18330976	+	promoter
28	LOC_Os03g29280	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	16670360	16670973	+	promoter,downstream
28	LOC_Os10g30944	expressed protein	gene	expressed protein	chr10	16068672	16078737	+	promoter
28	LOC_Os10g24360	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	12408041	12408933	+	promoter
28	LOC_Os02g25010	hypothetical protein	gene	hypothetical protein	chr2	14494666	14496124	+	promoter
28	LOC_Os01g59290	hypothetical protein	gene	hypothetical protein	chr1	34273707	34274255	+	promoter
28	LOC_Os12g16790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9618317	9623238	+	promoter
28	LOC_Os02g33960	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	20234187	20235137	+	promoter,downstream
28	LOC_Os04g40290	AAA-type ATPase family protein, putative, expressed	gene	AAA-type ATPase family protein, putative, expressed	chr4	23770328	23774833	+	promoter
28	LOC_Os11g03260	ligA, putative	gene	ligA, putative	chr11	1195299	1196832	-	promoter
28	LOC_Os04g12270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6771228	6771920	+	promoter,downstream
28	LOC_Os01g33250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18310439	18315013	-	promoter
28	LOC_Os11g35740	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	20513698	20518227	-	promoter
28	LOC_Os09g04560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2433379	2433843	-	promoter,downstream
28	LOC_Os08g39770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25181523	25183502	+	promoter
28	LOC_Os11g06630	ribosome inactivating protein, putative	gene	ribosome inactivating protein, putative	chr11	3207208	3208083	-	promoter
28	LOC_Os07g25580	hypothetical protein	gene	hypothetical protein	chr7	14662912	14663220	+	promoter
28	LOC_Os07g13770	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr7	7899578	7901422	+	promoter
28	LOC_Os05g29840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17207878	17208636	-	promoter,downstream
28	LOC_Os07g45600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27212871	27214040	-	promoter,downstream
28	LOC_Os10g10020	hypothetical protein	gene	hypothetical protein	chr10	5452342	5454324	+	promoter
28	LOC_Os04g45890	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	26986985	26988527	-	promoter,downstream
28	LOC_Os09g03240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	1561306	1561719	+	promoter
28	LOC_Os12g22690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12807952	12811006	+	promoter,downstream
28	LOC_Os06g50639	hypothetical protein	gene	hypothetical protein	chr6	30654893	30656964	-	promoter
28	LOC_Os07g36020	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr7	21550535	21551149	-	promoter
28	LOC_Os08g07280	expressed protein	gene	expressed protein	chr8	4064652	4068285	+	promoter
28	LOC_Os04g21020	expressed protein	gene	expressed protein	chr4	11812054	11813233	+	promoter
28	LOC_Os08g04080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1977617	1979806	-	promoter
28	LOC_Os02g17750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	10248300	10251632	-	promoter
28	LOC_Os08g12100	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	7124310	7124906	+	promoter,downstream
28	LOC_Os03g32960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18839367	18845788	-	promoter,downstream
28	LOC_Os01g26330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14934683	14935207	-	promoter
28	LOC_Os09g05020	tyrosine phosphatase family protein, putative, expressed	gene	tyrosine phosphatase family protein, putative, expressed	chr9	2696267	2701745	+	promoter
28	LOC_Os08g17810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10919052	10919467	-	promoter
28	LOC_Os12g33840	hypothetical protein	gene	hypothetical protein	chr12	20376273	20376777	+	promoter,downstream
28	LOC_Os08g22560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13579597	13580766	-	promoter
28	LOC_Os10g06730	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3482436	3483227	-	promoter,downstream
28	LOC_Os04g40270	hypothetical protein	gene	hypothetical protein	chr4	23763991	23764266	-	promoter
28	LOC_Os10g24240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12347605	12347928	+	promoter,downstream
28	LOC_Os04g50150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29722985	29726306	+	promoter
28	LOC_Os03g37440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20759298	20760217	-	promoter,downstream
28	LOC_Os08g23230	hypothetical protein	gene	hypothetical protein	chr8	14023636	14024229	-	promoter,downstream
28	LOC_Os01g46790	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	26678429	26679273	-	promoter
28	LOC_Os08g03110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1414045	1415820	-	promoter,downstream
28	LOC_Os01g02750	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr1	953075	955817	+	promoter
28	LOC_Os04g28700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16835190	16837085	-	promoter
28	LOC_Os03g37444	unknown	gene	unknown	chr3	20761625	20762085	-	promoter,downstream
28	LOC_Os05g31810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18465126	18465437	-	promoter
28	LOC_Os05g20490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12026980	12028089	-	promoter,downstream
28	LOC_Os02g27360	aspartic proteinase-like protein 2 precursor, putative, expressed	gene	aspartic proteinase-like protein 2 precursor, putative, expressed	chr2	16109027	16114570	-	promoter
28	LOC_Os12g35970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21954707	21959077	+	promoter
28	LOC_Os06g34940	hypothetical protein	gene	hypothetical protein	chr6	20321475	20321708	+	promoter
28	LOC_Os12g27180	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15947988	15948341	-	promoter,downstream
28	LOC_Os12g21530	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12105021	12105721	+	promoter
28	LOC_Os10g16540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8171238	8174324	+	promoter,downstream
28	LOC_Os02g27960	expressed protein	gene	expressed protein	chr2	16544312	16547049	-	promoter
28	LOC_Os04g03240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1374122	1375673	+	promoter
28	LOC_Os04g18970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10531299	10531637	-	promoter,downstream
28	LOC_Os08g21030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12576512	12577777	-	promoter,downstream
28	LOC_Os12g20360	hypothetical protein	gene	hypothetical protein	chr12	11886841	11887374	-	promoter,downstream
28	LOC_Os04g29900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17654134	17655393	+	promoter
28	LOC_Os10g19270	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	9742413	9745505	-	promoter
28	LOC_Os12g01110	hypothetical protein	gene	hypothetical protein	chr12	51050	53138	-	promoter
28	LOC_Os01g24950	exocyst complex component 6, putative, expressed	gene	exocyst complex component 6, putative, expressed	chr1	14058546	14063879	+	promoter
28	LOC_Os08g20300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12190244	12191020	+	promoter
28	LOC_Os05g15580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8821982	8831782	+	promoter,downstream
28	LOC_Os02g04360	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	1921049	1921726	+	promoter,downstream
28	LOC_Os03g12590	coatomer subunit gamma-1, putative, expressed	gene	coatomer subunit gamma-1, putative, expressed	chr3	6675289	6682848	+	promoter,downstream
28	LOC_Os05g30870	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr5	17862323	17869803	+	promoter
28	LOC_Os04g10514	unknown	gene	unknown	chr4	5723059	5723256	+	promoter
28	LOC_Os06g16540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9486309	9490006	+	promoter
28	LOC_Os02g34500	expressed protein	gene	expressed protein	chr2	20670453	20676401	+	promoter
28	LOC_Os02g08350	expressed protein	gene	expressed protein	chr2	4432871	4438113	-	promoter
28	LOC_Os09g10730	expressed protein	gene	expressed protein	chr9	5855194	5856151	-	promoter
28	LOC_Os11g36850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	21273684	21274976	-	promoter,downstream
28	LOC_Os11g23900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13075630	13076391	+	promoter
28	LOC_Os08g20820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	12494158	12494481	-	promoter,downstream
28	LOC_Os07g11480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6307083	6311565	-	promoter
28	LOC_Os04g07350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3905779	3907426	-	promoter,downstream
28	LOC_Os01g27930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15610348	15613496	+	promoter
28	LOC_Os02g25540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14915115	14916974	-	promoter,downstream
28	LOC_Os11g15649	unknown	gene	unknown	chr11	8872815	8873382	-	promoter
28	LOC_Os11g11850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6570036	6571201	+	promoter,downstream
28	LOC_Os01g29220	expressed protein	gene	expressed protein	chr1	16363868	16368831	+	promoter
28	LOC_Os11g08150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	4270222	4274732	+	promoter
28	LOC_Os05g17350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9953071	9954324	-	promoter,downstream
28	LOC_Os09g04250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2248676	2249133	-	promoter
28	LOC_Os06g44710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	26988510	26990397	+	promoter
28	LOC_Os02g22350	hypothetical protein	gene	hypothetical protein	chr2	13337395	13340367	+	promoter,downstream
28	LOC_Os03g43850	recA protein, putative, expressed	gene	recA protein, putative, expressed	chr3	24589469	24594548	+	promoter
28	LOC_Os06g16360	hypothetical protein	gene	hypothetical protein	chr6	9332214	9332864	-	promoter
28	LOC_Os07g39000	expressed protein	gene	expressed protein	chr7	23377645	23380051	+	promoter
28	LOC_Os08g34540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21676352	21679033	-	promoter
28	LOC_Os08g29750	hypothetical protein	gene	hypothetical protein	chr8	18280316	18281305	+	promoter
28	LOC_Os10g32670	expressed protein	gene	expressed protein	chr10	17036357	17037222	-	promoter
28	LOC_Os08g14350	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	8604011	8604721	-	promoter
28	LOC_Os09g36970	hypothetical protein	gene	hypothetical protein	chr9	21327366	21327821	+	promoter
28	LOC_Os08g24580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14858840	14861922	-	promoter,downstream
28	LOC_Os06g37935	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22449594	22450943	+	promoter,downstream
28	LOC_Os01g01500	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	258607	258909	+	promoter,downstream
28	LOC_Os04g55340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32730687	32734736	-	promoter,downstream
28	LOC_Os12g33550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20237431	20238175	-	promoter,downstream
28	LOC_Os08g23380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14129565	14132991	-	promoter
28	LOC_Os10g17280	ATP synthase gamma chain, putative, expressed	gene	ATP synthase gamma chain, putative, expressed	chr10	8620714	8626090	+	promoter,downstream
28	LOC_Os09g03939	white-brown complex homolog protein 11, putative, expressed	gene	white-brown complex homolog protein 11, putative, expressed	chr9	2006493	2020294	-	promoter
28	LOC_Os06g31030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18054079	18056280	-	promoter
28	LOC_Os10g08830	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	4792247	4797525	-	promoter
28	LOC_Os11g26290	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14588981	14590711	-	promoter,downstream
28	LOC_Os12g16440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9411970	9413508	+	promoter,downstream
28	LOC_Os08g23930	ENT domain containing protein, expressed	gene	ENT domain containing protein, expressed	chr8	14473196	14479568	+	promoter
28	LOC_Os05g23180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	13163695	13165988	+	promoter
28	LOC_Os06g32700	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	19014285	19014956	+	promoter
28	LOC_Os03g56572	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	32218041	32222645	-	promoter
28	LOC_Os05g20640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12106166	12106612	-	promoter,downstream
28	LOC_Os07g24578	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13988430	13988702	+	promoter,downstream
28	LOC_Os10g13620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7398798	7399313	-	promoter,downstream
28	LOC_Os12g13480	hypothetical protein	gene	hypothetical protein	chr12	7563232	7563670	+	promoter
28	LOC_Os03g62800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35522543	35525680	-	promoter,downstream
28	LOC_Os07g42690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25557059	25560680	-	promoter
28	LOC_Os01g01140	hypothetical protein	gene	hypothetical protein	chr1	68675	69131	+	promoter,downstream
28	LOC_Os08g21760	Rer1 protein, putative, expressed	gene	Rer1 protein, putative, expressed	chr8	13025880	13032040	-	promoter
28	LOC_Os08g22190	hypothetical protein	gene	hypothetical protein	chr8	13386572	13387388	+	promoter
28	LOC_Os11g41700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	24569521	24569814	-	promoter
28	LOC_Os02g21185	hypothetical protein	gene	hypothetical protein	chr2	12567018	12567855	+	promoter
28	LOC_Os12g20010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11643671	11644193	-	promoter
28	LOC_Os02g17490	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	10070458	10071107	+	promoter
28	LOC_Os08g12560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7432259	7434184	+	promoter,downstream
28	LOC_Os02g05270	hypothetical protein	gene	hypothetical protein	chr2	2535305	2536173	-	promoter,downstream
28	LOC_Os01g35080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19423655	19426038	+	promoter
28	LOC_Os12g19160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11120452	11121387	-	promoter
28	LOC_Os03g44350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24933735	24934727	+	promoter,downstream
28	LOC_Os06g13280	O-methyltransferase, putative	gene	O-methyltransferase, putative	chr6	7305307	7306548	-	promoter
28	LOC_Os07g07140	hypothetical protein	gene	hypothetical protein	chr7	3526800	3528674	+	promoter
28	LOC_Os01g39670	OsFBD1 - F-box and FBD domain containing protein, expressed	gene	OsFBD1 - F-box and FBD domain containing protein, expressed	chr1	22374530	22376515	+	promoter
28	LOC_Os09g17260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10582307	10582840	+	promoter
28	LOC_Os11g43450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25764746	25767479	-	promoter,downstream
28	LOC_Os06g24580	hypothetical protein	gene	hypothetical protein	chr6	14413518	14414629	-	promoter
28	LOC_Os07g25250	hypothetical protein	gene	hypothetical protein	chr7	14427962	14428670	+	promoter,downstream
28	LOC_Os07g24380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13879291	13879767	-	promoter,downstream
28	LOC_Os07g45840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27357395	27357820	+	promoter,downstream
28	LOC_Os02g32720	hypothetical protein	gene	hypothetical protein	chr2	19427742	19428566	+	promoter
28	LOC_Os09g39300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22586033	22589305	-	promoter
28	LOC_Os04g22680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12841755	12844841	+	promoter,downstream
28	LOC_Os06g33790	hypothetical protein	gene	hypothetical protein	chr6	19653274	19653531	+	promoter
28	LOC_Os12g18950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10991839	10992405	-	promoter
28	LOC_Os01g19070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10779977	10780888	+	promoter,downstream
28	LOC_Os12g16450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9415583	9421009	+	promoter
28	LOC_Os05g18310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10550748	10552302	+	promoter,downstream
28	LOC_Os02g18860	hypothetical protein	gene	hypothetical protein	chr2	11008117	11008963	+	promoter
28	LOC_Os11g08740	hypothetical protein	gene	hypothetical protein	chr11	4649403	4649678	-	promoter
28	LOC_Os02g01400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	237453	240670	-	promoter
28	LOC_Os02g17820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10301933	10308307	-	promoter,downstream
28	LOC_Os07g13710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7867385	7871651	-	promoter
28	LOC_Os11g30400	hypothetical protein	gene	hypothetical protein	chr11	17199224	17203436	+	promoter
28	LOC_Os12g16540	OsWAK124 - OsWAK receptor-like  protein OsWAK-RLP, expressed	gene	OsWAK124 - OsWAK receptor-like  protein OsWAK-RLP, expressed	chr12	9473783	9476303	-	promoter
28	LOC_Os04g05820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2985287	2989290	-	promoter,downstream
28	LOC_Os01g68930	expressed protein	gene	expressed protein	chr1	40055010	40058403	-	promoter
28	LOC_Os01g35680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19759892	19760588	+	promoter,downstream
28	LOC_Os07g30110	expressed protein	gene	expressed protein	chr7	17766549	17770521	+	promoter
28	LOC_Os11g35180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20166297	20167118	+	promoter
28	LOC_Os04g24780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14225416	14227850	+	promoter,downstream
28	LOC_Os04g24980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14383612	14385514	-	promoter,downstream
28	LOC_Os12g22910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	12931211	12933606	+	promoter
28	LOC_Os08g37550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	23776453	23780419	+	promoter
28	LOC_Os02g20040	loricrin, putative, expressed	gene	loricrin, putative, expressed	chr2	11798876	11799843	-	promoter
28	LOC_Os07g16870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9918226	9920765	-	promoter,downstream
28	LOC_Os12g37030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22661928	22667724	-	promoter
28	LOC_Os12g22260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12543726	12547378	-	promoter,downstream
28	LOC_Os07g12869	unknown	gene	unknown	chr7	7378103	7378847	+	promoter
28	LOC_Os10g12000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6676865	6680173	+	promoter
28	LOC_Os05g28890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16876295	16876621	-	promoter
28	LOC_Os02g15490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8671153	8674094	+	promoter
28	LOC_Os01g18010	hypothetical protein	gene	hypothetical protein	chr1	10078314	10079292	+	promoter
28	LOC_Os11g21940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12124196	12125823	-	promoter,downstream
28	LOC_Os04g34850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	20960282	20964774	+	promoter
28	LOC_Os05g33730	gibberellin receptor GID1L2, putative, expressed	gene	gibberellin receptor GID1L2, putative, expressed	chr5	19805895	19808759	+	promoter
28	LOC_Os06g42510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25557692	25560996	-	promoter
28	LOC_Os04g07070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3744644	3746077	-	promoter,downstream
28	LOC_Os09g21189	unknown	gene	unknown	chr9	12787909	12788698	+	promoter,downstream
28	LOC_Os02g25970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15237925	15248297	-	promoter
28	LOC_Os04g14870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8359101	8362017	+	promoter,downstream
28	LOC_Os03g33800	hypothetical protein	gene	hypothetical protein	chr3	19316823	19317578	-	promoter,downstream
28	LOC_Os12g14200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8062288	8065988	+	promoter
28	LOC_Os07g14990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8593501	8597402	-	promoter
28	LOC_Os08g24020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14523698	14524559	-	promoter,downstream
28	LOC_Os11g03520	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr11	1358189	1359545	-	promoter
28	LOC_Os11g10030	hypothetical protein	gene	hypothetical protein	chr11	5366980	5367204	+	promoter,downstream
28	LOC_Os08g24660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14902105	14903584	+	promoter
28	LOC_Os05g51730	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	29608718	29610348	-	promoter,downstream
28	LOC_Os03g29389	hypothetical protein	gene	hypothetical protein	chr3	16738243	16739722	-	promoter
28	LOC_Os02g31980	proton-dependent oligopeptide transport, putative	gene	proton-dependent oligopeptide transport, putative	chr2	18896745	18897044	-	promoter
28	LOC_Os11g18620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	10502254	10505268	-	promoter,downstream
28	LOC_Os05g24300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	14004388	14005660	+	promoter,downstream
28	LOC_Os04g11100	hypothetical protein	gene	hypothetical protein	chr4	6036892	6037946	+	promoter
28	LOC_Os05g37110	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	21629021	21629428	+	promoter
28	LOC_Os10g29010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	15047411	15050320	+	promoter,downstream
28	LOC_Os04g20180	expressed protein	gene	expressed protein	chr4	11237943	11245462	+	promoter
28	LOC_Os04g24410	kinesin heavy chain isolog, putative, expressed	gene	kinesin heavy chain isolog, putative, expressed	chr4	13979864	13988305	-	promoter
28	LOC_Os01g66060	hypothetical protein	gene	hypothetical protein	chr1	38335174	38336569	-	promoter,downstream
28	LOC_Os10g07120	hypothetical protein	gene	hypothetical protein	chr10	3743183	3743503	+	promoter
28	LOC_Os05g22920	digestive organ expansion factor, putative, expressed	gene	digestive organ expansion factor, putative, expressed	chr5	12970482	12989607	+	promoter,downstream
28	LOC_Os04g05890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3038923	3041951	-	promoter,downstream
28	LOC_Os09g11690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6523013	6524570	-	promoter
28	LOC_Os12g13080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7262472	7264668	+	promoter
28	LOC_Os01g36940	OsFBX13 - F-box domain containing protein, expressed	gene	OsFBX13 - F-box domain containing protein, expressed	chr1	20594147	20597807	+	promoter
28	LOC_Os01g63530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	36823030	36828045	+	promoter
28	LOC_Os09g24440	expressed protein	gene	expressed protein	chr9	14530189	14546559	+	promoter
28	LOC_Os04g18180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10041274	10042125	-	promoter,downstream
28	LOC_Os09g37860	NOL1/NOP2/sun family protein, putative, expressed	gene	NOL1/NOP2/sun family protein, putative, expressed	chr9	21827697	21833015	+	promoter
28	LOC_Os04g14620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8193420	8197810	+	promoter,downstream
28	LOC_Os03g28910	hypothetical protein	gene	hypothetical protein	chr3	16395891	16396757	-	promoter
28	LOC_Os02g33440	hypothetical protein	gene	hypothetical protein	chr2	19872435	19872855	-	promoter,downstream
28	LOC_Os10g17250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8600843	8606941	-	promoter,downstream
28	LOC_Os04g49820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	29514145	29514654	-	promoter,downstream
28	LOC_Os11g16730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9261220	9266761	-	promoter,downstream
28	LOC_Os06g33060	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr6	19250252	19250948	-	promoter
28	LOC_Os01g02020	acetyl-CoA acetyltransferase, cytosolic, putative, expressed	gene	acetyl-CoA acetyltransferase, cytosolic, putative, expressed	chr1	548108	552287	+	promoter
28	LOC_Os10g40555	expressed protein	gene	expressed protein	chr10	21635850	21637755	-	promoter
28	LOC_Os07g26090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14970070	14971403	-	promoter
28	LOC_Os07g16070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9368137	9371175	+	promoter,downstream
28	LOC_Os12g11430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6173335	6178613	-	promoter
28	LOC_Os11g18540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10443397	10444062	-	promoter,downstream
28	LOC_Os05g23320	expressed protein	gene	expressed protein	chr5	13251144	13255372	+	promoter
28	LOC_Os07g18040	hypothetical protein	gene	hypothetical protein	chr7	10677017	10677256	+	promoter
28	LOC_Os07g23060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13008829	13010094	-	promoter,downstream
28	LOC_Os04g07560	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	4016344	4016760	-	promoter,downstream
28	LOC_Os12g30050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	17965760	17971656	+	promoter
28	LOC_Os01g14780	hypothetical protein	gene	hypothetical protein	chr1	8266911	8268269	+	promoter
28	LOC_Os01g35590	hypothetical protein	gene	hypothetical protein	chr1	19688414	19691909	+	promoter
28	LOC_Os07g35110	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr7	21028441	21031046	+	promoter,downstream
28	LOC_Os10g12520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6978058	6978894	-	promoter,downstream
28	LOC_Os01g47450	OsCttP1 - Putative C-terminal processing peptidase homologue, expressed	gene	OsCttP1 - Putative C-terminal processing peptidase homologue, expressed	chr1	27114618	27120134	+	promoter
28	LOC_Os04g18790	OsFBX126 - F-box domain containing protein, expressed	gene	OsFBX126 - F-box domain containing protein, expressed	chr4	10442964	10444424	-	promoter
28	LOC_Os02g21340	ABC-2 type transporter family protein, expressed	gene	ABC-2 type transporter family protein, expressed	chr2	12663696	12669649	-	promoter,downstream
28	LOC_Os03g39250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21805223	21809790	-	promoter,downstream
28	LOC_Os10g06860	FAR1 family protein	gene	FAR1 family protein	chr10	3576218	3582028	+	promoter
28	LOC_Os07g29890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	17588612	17590222	-	promoter,downstream
28	LOC_Os10g09960	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	5417288	5418385	+	promoter,downstream
28	LOC_Os06g14999	unknown	gene	unknown	chr6	8501959	8502842	-	promoter,downstream
28	LOC_Os09g09590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5172915	5173313	+	promoter
28	LOC_Os07g11040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6077825	6081130	-	promoter
28	LOC_Os05g17210	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9852919	9853476	+	promoter,downstream
28	LOC_Os07g29470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17304277	17305504	+	promoter,downstream
28	LOC_Os03g23850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13533753	13535722	-	promoter,downstream
28	LOC_Os10g40220	expressed protein	gene	expressed protein	chr10	21458974	21469475	+	promoter
28	LOC_Os11g15720	expressed protein	gene	expressed protein	chr11	8900813	8901569	+	promoter
28	LOC_Os09g12360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7064368	7065024	-	promoter,downstream
28	LOC_Os12g08610	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	4375208	4377584	+	promoter,downstream
28	LOC_Os05g00988	hypothetical protein	gene	hypothetical protein	chr5	4003	4356	+	promoter
28	LOC_Os01g11690	hypothetical protein	gene	hypothetical protein	chr1	6302562	6302822	-	promoter
28	LOC_Os06g20260	expressed protein	gene	expressed protein	chr6	11623800	11626173	-	promoter
28	LOC_Os11g28810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16226584	16228488	-	promoter,downstream
28	LOC_Os04g05760	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2951915	2953853	+	promoter
28	LOC_Os07g14400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8216995	8219699	-	promoter,downstream
28	LOC_Os02g12950	hypothetical protein	gene	hypothetical protein	chr2	6845277	6846826	+	promoter
28	LOC_Os04g10214	expressed protein	gene	expressed protein	chr4	5517354	5518219	+	promoter
28	LOC_Os05g27910	hypothetical protein	gene	hypothetical protein	chr5	16227233	16228153	-	promoter,downstream
28	LOC_Os03g06290	OsSub27 - Putative Subtilisin homologue, expressed	gene	OsSub27 - Putative Subtilisin homologue, expressed	chr3	3150509	3164234	-	promoter
28	LOC_Os11g36380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20968210	20973918	-	promoter
28	LOC_Os06g28550	nmrA-like family domain containing protein, expressed	gene	nmrA-like family domain containing protein, expressed	chr6	16243350	16246173	-	promoter
28	LOC_Os05g29150	hypothetical protein	gene	hypothetical protein	chr5	17067996	17068912	+	promoter
28	LOC_Os09g14270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8437288	8438650	-	promoter,downstream
28	LOC_Os01g15960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8982764	8983093	+	promoter
28	LOC_Os03g48464	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27596555	27600252	+	promoter
28	LOC_Os10g12090	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	6736643	6736891	-	promoter
28	LOC_Os06g21930	inorganic phosphate transporter, putative	gene	inorganic phosphate transporter, putative	chr6	12685485	12686679	+	promoter
28	LOC_Os03g35620	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	19734256	19736198	-	promoter,downstream
28	LOC_Os08g24110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14557634	14559510	-	promoter,downstream
28	LOC_Os02g42770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25714631	25716884	+	promoter
28	LOC_Os06g16700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9623150	9627769	+	promoter,downstream
28	LOC_Os01g53840	protein kinase family protein, putative, expressed	gene	protein kinase family protein, putative, expressed	chr1	30948334	30953694	-	promoter
28	LOC_Os09g13290	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	7661992	7662828	+	promoter
28	LOC_Os05g23570	hypothetical protein	gene	hypothetical protein	chr5	13459692	13460357	+	promoter
28	LOC_Os06g22380	expressed protein	gene	expressed protein	chr6	12989975	12999962	-	promoter
28	LOC_Os12g09360	expressed protein	gene	expressed protein	chr12	4907373	4909076	-	promoter
28	LOC_Os06g33640	CAPIP1, putative, expressed	gene	CAPIP1, putative, expressed	chr6	19581001	19584411	-	promoter
28	LOC_Os05g01620	OsFBX155 - F-box domain containing protein	gene	OsFBX155 - F-box domain containing protein	chr5	368477	370922	-	promoter
28	LOC_Os01g37550	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	20970342	20973584	-	promoter
28	LOC_Os10g05200	OsFBX367 - F-box domain containing protein, expressed	gene	OsFBX367 - F-box domain containing protein, expressed	chr10	2548359	2550478	+	promoter
28	LOC_Os06g17650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10250452	10251149	+	promoter
28	LOC_Os01g44030	hypothetical protein	gene	hypothetical protein	chr1	25221357	25222950	-	promoter
28	LOC_Os12g01280	hypothetical protein	gene	hypothetical protein	chr12	159989	160258	-	promoter
28	LOC_Os05g30470	collagen alpha-1, putative, expressed	gene	collagen alpha-1, putative, expressed	chr5	17595576	17596420	+	promoter
28	LOC_Os02g18030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10459103	10459894	-	promoter
28	LOC_Os10g06470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3329004	3330240	-	promoter,downstream
28	LOC_Os01g10420	hypothetical protein	gene	hypothetical protein	chr1	5489623	5490360	-	promoter
28	LOC_Os09g09030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4808634	4809068	+	promoter,downstream
28	LOC_Os04g02730	tRNA-dihydrouridine synthase 3-like, putative, expressed	gene	tRNA-dihydrouridine synthase 3-like, putative, expressed	chr4	1042454	1049555	+	promoter
28	LOC_Os04g44000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25894441	25899183	+	promoter
28	LOC_Os04g43900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25817145	25820839	+	promoter
28	LOC_Os11g41580	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	24475306	24476632	-	promoter
28	LOC_Os06g20460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	11748072	11749772	+	promoter,downstream
28	LOC_Os08g20952	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12544468	12547023	+	promoter
28	LOC_Os05g20170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11808227	11810204	+	promoter
28	LOC_Os09g10250	hypothetical protein	gene	hypothetical protein	chr9	5584021	5584287	-	promoter
28	LOC_Os06g01240	hypothetical protein	gene	hypothetical protein	chr6	160576	160995	-	promoter
28	LOC_Os03g31260	cysteine-rich receptor-like protein kinase 28 precursor, putative	gene	cysteine-rich receptor-like protein kinase 28 precursor, putative	chr3	17803476	17804747	-	promoter
28	LOC_Os05g37740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22035576	22036247	+	promoter,downstream
28	LOC_Os04g05720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2917497	2918399	+	promoter
28	LOC_Os12g14420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8214398	8218822	+	promoter,downstream
28	LOC_Os08g17920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	10992608	10992835	-	promoter
28	LOC_Os11g18560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10457147	10460844	+	promoter
28	LOC_Os03g29230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16623224	16623565	-	promoter
28	LOC_Os10g12690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7087468	7094195	+	promoter,downstream
28	LOC_Os07g30550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18067816	18070854	+	promoter
28	LOC_Os03g27730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	15889138	15895125	-	promoter
28	LOC_Os04g05020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2431132	2433107	-	promoter
28	LOC_Os06g24000	hypothetical protein	gene	hypothetical protein	chr6	14020165	14020890	+	promoter
28	LOC_Os11g38490	hypothetical protein	gene	hypothetical protein	chr11	22347609	22349764	+	promoter
28	LOC_Os08g36206	hypothetical protein	gene	hypothetical protein	chr8	22825146	22826006	-	promoter
28	LOC_Os04g10270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5543146	5546258	+	promoter,downstream
28	LOC_Os04g10250	hypothetical protein	gene	hypothetical protein	chr4	5530398	5533705	+	promoter
28	LOC_Os08g12080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7113810	7119717	-	promoter,downstream
28	LOC_Os12g22650	histone H3, putative, expressed	gene	histone H3, putative, expressed	chr12	12789786	12790207	-	promoter,downstream
28	LOC_Os10g26940	BURP domain containing protein, expressed	gene	BURP domain containing protein, expressed	chr10	14100092	14101662	-	promoter
28	LOC_Os05g18294	SEC14 cytosolic factor family protein, putative, expressed	gene	SEC14 cytosolic factor family protein, putative, expressed	chr5	10537315	10546579	-	promoter,downstream
28	LOC_Os06g27760	peptide methionine sulfoxide reductase msrB, putative, expressed	gene	peptide methionine sulfoxide reductase msrB, putative, expressed	chr6	15717518	15720375	-	promoter,downstream
28	LOC_Os01g65040	hypothetical protein	gene	hypothetical protein	chr1	37751580	37752020	+	promoter
28	LOC_Os04g18230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10069759	10070472	-	promoter,downstream
28	LOC_Os10g33750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	17756168	17758659	-	promoter
28	LOC_Os11g25340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13979393	13981282	+	promoter
28	LOC_Os12g24460	hypothetical protein	gene	hypothetical protein	chr12	13964813	13965765	+	promoter
28	LOC_Os03g23820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13507283	13508572	-	promoter,downstream
28	LOC_Os08g06160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3399848	3400663	+	promoter,downstream
28	LOC_Os03g32664	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18709208	18709558	-	promoter,downstream
28	LOC_Os04g45370	OsSAUR19 - Auxin-responsive SAUR gene family member, expressed	gene	OsSAUR19 - Auxin-responsive SAUR gene family member, expressed	chr4	26645880	26646742	+	promoter
28	LOC_Os10g01410	OsWAK94 - OsWAK receptor-like  protein OsWAK-RLP	gene	OsWAK94 - OsWAK receptor-like  protein OsWAK-RLP	chr10	248310	250408	-	promoter
28	LOC_Os12g14699	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr12	8405301	8415060	-	promoter
28	LOC_Os01g39010	50S ribosomal protein, putative, expressed	gene	50S ribosomal protein, putative, expressed	chr1	21932219	21935027	+	promoter
28	LOC_Os08g36520	peptidase aspartic family protein, putative	gene	peptidase aspartic family protein, putative	chr8	23059896	23060513	-	promoter
28	LOC_Os10g29560	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr10	15289332	15297862	+	promoter
28	LOC_Os01g14470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8100999	8102480	-	promoter,downstream
28	LOC_Os08g15550	DEFL56 - Defensin and Defensin-like DEFL family	gene	DEFL56 - Defensin and Defensin-like DEFL family	chr8	9457773	9458486	-	promoter
28	LOC_Os04g43420	PTAC5, putative, expressed	gene	PTAC5, putative, expressed	chr4	25515723	25518449	+	promoter
28	LOC_Os10g13790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7508419	7509360	-	promoter,downstream
28	LOC_Os04g12030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6598123	6601382	+	promoter,downstream
28	LOC_Os06g28144	expressed protein	gene	expressed protein	chr6	15982101	15984318	-	promoter
28	LOC_Os02g16160	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	9191843	9192277	+	promoter
28	LOC_Os10g31880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16674213	16675610	+	promoter
28	LOC_Os08g22008	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13209206	13214492	+	promoter
28	LOC_Os07g31560	hypothetical protein	gene	hypothetical protein	chr7	18739392	18740416	-	promoter
28	LOC_Os02g24530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14208514	14209581	-	promoter,downstream
28	LOC_Os06g03430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1314087	1314542	+	promoter,downstream
28	LOC_Os04g18720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10374382	10375096	-	promoter,downstream
28	LOC_Os02g36660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22127207	22127503	-	promoter
28	LOC_Os06g16020	hypothetical protein	gene	hypothetical protein	chr6	9112971	9114428	-	promoter
28	LOC_Os05g03260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1317206	1317823	-	promoter
28	LOC_Os01g32259	expressed protein	gene	expressed protein	chr1	17680387	17682048	+	promoter
28	LOC_Os12g18330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10576502	10577728	-	promoter,downstream
28	LOC_Os08g32200	hypothetical protein	gene	hypothetical protein	chr8	19964501	19964797	+	promoter
28	LOC_Os01g19060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10778271	10778737	-	promoter,downstream
28	LOC_Os12g33690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20307905	20312450	+	promoter,downstream
28	LOC_Os01g20870	hypothetical protein	gene	hypothetical protein	chr1	11646601	11646948	+	promoter
28	LOC_Os04g06110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3167869	3172389	-	promoter,downstream
28	LOC_Os08g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14554307	14556902	+	promoter,downstream
28	LOC_Os06g20530	hypothetical protein	gene	hypothetical protein	chr6	11794807	11795136	+	promoter,downstream
28	LOC_Os08g21710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13008305	13010422	+	promoter,downstream
28	LOC_Os01g35660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19749167	19753218	+	promoter,downstream
28	LOC_Os06g31500	hypothetical protein	gene	hypothetical protein	chr6	18325057	18325491	-	promoter,downstream
28	LOC_Os12g21624	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12146407	12150901	-	promoter,downstream
28	LOC_Os10g15030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7887876	7888517	+	promoter,downstream
28	LOC_Os12g18300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10553693	10556888	+	promoter
28	LOC_Os09g13500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7809086	7812418	-	promoter,downstream
28	LOC_Os02g26650	delta14-sterol reductase, putative, expressed	gene	delta14-sterol reductase, putative, expressed	chr2	15635392	15641511	-	promoter
28	LOC_Os06g33620	hypothetical protein	gene	hypothetical protein	chr6	19575635	19576369	+	promoter,downstream
28	LOC_Os04g16100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8728819	8736307	-	promoter,downstream
28	LOC_Os12g22760	expressed protein	gene	expressed protein	chr12	12842529	12849104	+	promoter
28	LOC_Os07g19360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11454840	11455368	-	promoter,downstream
28	LOC_Os06g09030	hypothetical protein	gene	hypothetical protein	chr6	4545927	4546190	-	promoter
28	LOC_Os04g30880	TBC domain containing protein, expressed	gene	TBC domain containing protein, expressed	chr4	18280789	18284715	+	promoter
28	LOC_Os08g19050	hypothetical protein	gene	hypothetical protein	chr8	11367942	11369576	+	promoter
28	LOC_Os04g15765	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8560726	8561124	-	promoter
28	LOC_Os12g10150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5368912	5369148	+	promoter,downstream
28	LOC_Os06g37926	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22448342	22448809	+	promoter
28	LOC_Os06g31320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18227843	18228321	+	promoter
28	LOC_Os07g26230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15088689	15089915	-	promoter,downstream
28	LOC_Os09g20780	RNA recognition motif containing protein, putative	gene	RNA recognition motif containing protein, putative	chr9	12519956	12520243	+	promoter
28	LOC_Os10g29580	expressed protein	gene	expressed protein	chr10	15303391	15303970	+	promoter
28	LOC_Os11g42350	glutathione synthetase, chloroplast precursor, putative, expressed	gene	glutathione synthetase, chloroplast precursor, putative, expressed	chr11	25026031	25030713	+	promoter
28	LOC_Os01g03780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	1584991	1590955	+	promoter,downstream
28	LOC_Os07g09230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	4835623	4838865	+	promoter
28	LOC_Os01g36500	TKL_IRAK_DUF26-lh.5 - DUF26 kinases have homology to DUF26 containing loci	gene	TKL_IRAK_DUF26-lh.5 - DUF26 kinases have homology to DUF26 containing loci	chr1	20255217	20259673	-	promoter,downstream
28	LOC_Os02g13400	expressed protein	gene	expressed protein	chr2	7144545	7150537	+	promoter
28	LOC_Os03g20460	guanylate kinase, putative, expressed	gene	guanylate kinase, putative, expressed	chr3	11594171	11597778	+	promoter
28	LOC_Os11g20630	unknown	gene	unknown	chr11	11950435	11952743	-	promoter
28	LOC_Os04g38260	expressed protein	gene	expressed protein	chr4	22576222	22581059	-	promoter,downstream
28	LOC_Os06g06110	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	2817136	2824572	-	promoter,downstream
28	LOC_Os11g39470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23036247	23038785	+	promoter
28	LOC_Os12g21770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12244529	12247245	+	promoter,downstream
28	LOC_Os02g05190	expressed protein	gene	expressed protein	chr2	2484073	2485264	+	promoter
28	LOC_Os04g18290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10095078	10096880	+	promoter
28	LOC_Os10g29980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	15490387	15494481	-	promoter,downstream
28	LOC_Os10g34300	OsFBX387 - F-box domain containing protein	gene	OsFBX387 - F-box domain containing protein	chr10	18223237	18225755	-	promoter
28	LOC_Os12g19710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11481586	11481879	-	promoter,downstream
28	LOC_Os05g28000	hypothetical protein	gene	hypothetical protein	chr5	16284230	16284857	+	promoter
28	LOC_Os12g27000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15809407	15810531	-	promoter,downstream
28	LOC_Os05g26880	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	15544331	15545951	+	promoter,downstream
28	LOC_Os09g03550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1740987	1741343	-	promoter,downstream
28	LOC_Os09g09140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4888786	4890039	+	promoter,downstream
28	LOC_Os07g46960	hypothetical protein	gene	hypothetical protein	chr7	28065138	28066065	-	promoter
28	LOC_Os07g13840	hypothetical protein	gene	hypothetical protein	chr7	7924625	7925557	+	promoter,downstream
28	LOC_Os10g12804	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7164270	7166104	-	promoter,downstream
28	LOC_Os05g17520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10057693	10059469	-	promoter,downstream
28	LOC_Os03g15480	heat shock protein DnaJ, putative, expressed	gene	heat shock protein DnaJ, putative, expressed	chr3	8500302	8504614	+	promoter
28	LOC_Os11g31169	unknown	gene	unknown	chr11	17683054	17683350	+	promoter,downstream
28	LOC_Os03g38860	hypothetical protein	gene	hypothetical protein	chr3	21584333	21586001	+	promoter
28	LOC_Os01g05580	Exo70 exocyst complex subunit family, putative, expressed	gene	Exo70 exocyst complex subunit family, putative, expressed	chr1	2662539	2663072	-	promoter
28	LOC_Os06g35240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	20554175	20554507	-	promoter,downstream
28	LOC_Os07g08910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	4630549	4633747	-	promoter
28	LOC_Os12g24870	SWIM zinc finger family protein, putative	gene	SWIM zinc finger family protein, putative	chr12	14256443	14258594	+	promoter
28	LOC_Os11g32150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	18505999	18510836	+	promoter
28	LOC_Os02g26220	hypothetical protein	gene	hypothetical protein	chr2	15398031	15398381	+	promoter
28	LOC_Os03g34090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19425142	19425849	+	promoter,downstream
28	LOC_Os12g06430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3082048	3082690	-	promoter,downstream
28	LOC_Os06g38609	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22914542	22919920	-	promoter
28	LOC_Os07g30060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17730347	17732299	+	promoter
28	LOC_Os04g30590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	18094958	18098655	+	promoter
28	LOC_Os01g01910	hypothetical protein	gene	hypothetical protein	chr1	495066	496368	+	promoter
28	LOC_Os03g38764	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21524330	21529918	+	promoter
28	LOC_Os07g28030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16342617	16344866	+	promoter
28	LOC_Os09g11720	hypothetical protein	gene	hypothetical protein	chr9	6537316	6540870	+	promoter
28	LOC_Os07g28070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16370974	16371725	+	promoter
28	LOC_Os01g01510	sas10/Utp3 family protein, expressed	gene	sas10/Utp3 family protein, expressed	chr1	260504	267471	+	promoter
28	LOC_Os04g31270	EMB1688, putative, expressed	gene	EMB1688, putative, expressed	chr4	18530753	18535774	+	promoter
28	LOC_Os10g24290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12371778	12372893	-	promoter,downstream
28	LOC_Os11g42670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25236919	25237486	-	promoter
28	LOC_Os01g27850	hypothetical protein	gene	hypothetical protein	chr1	15556086	15556517	+	promoter
28	LOC_Os08g20830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12495447	12497040	+	promoter,downstream
28	LOC_Os07g37470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	22434587	22440090	+	promoter
28	LOC_Os09g14120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8362305	8370088	-	promoter
28	LOC_Os05g26400	prolamin precursor, putative, expressed	gene	prolamin precursor, putative, expressed	chr5	15285818	15286600	+	promoter,downstream
28	LOC_Os03g36910	SAM-dependent methyltransferase, putative, expressed	gene	SAM-dependent methyltransferase, putative, expressed	chr3	20483453	20485998	+	promoter
28	LOC_Os03g02514	hydrolase, alpha/beta fold family protein, putative, expressed	gene	hydrolase, alpha/beta fold family protein, putative, expressed	chr3	921682	927188	+	promoter
28	LOC_Os04g50168	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29745910	29747581	+	promoter
28	LOC_Os08g28340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17289801	17290871	-	promoter,downstream
28	LOC_Os08g26480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16124578	16125540	-	promoter,downstream
28	LOC_Os07g24870	hypothetical protein	gene	hypothetical protein	chr7	14142373	14142855	+	promoter
28	LOC_Os12g29370	ZmEBE-1 protein, putative	gene	ZmEBE-1 protein, putative	chr12	17435504	17437596	+	promoter,downstream
28	LOC_Os03g39580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	21973765	21977057	+	promoter,downstream
28	LOC_Os04g20130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11206027	11206740	+	promoter
28	LOC_Os02g41730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	25081670	25082775	-	promoter
28	LOC_Os05g18150	hypothetical protein	gene	hypothetical protein	chr5	10429936	10430424	+	promoter,downstream
28	LOC_Os09g13720	hypothetical protein	gene	hypothetical protein	chr9	8025832	8029268	+	promoter
28	LOC_Os10g21574	hypothetical protein	gene	hypothetical protein	chr10	10980734	10981167	-	promoter
28	LOC_Os07g03540	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	1413166	1414094	-	promoter
28	LOC_Os10g04342	stripe rust resistance protein Yr10, putative, expressed	gene	stripe rust resistance protein Yr10, putative, expressed	chr10	2043019	2056536	+	promoter
28	LOC_Os12g14900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8521834	8523991	-	promoter
28	LOC_Os04g18810	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	10449650	10450723	-	promoter,downstream
28	LOC_Os12g24010	hypothetical protein	gene	hypothetical protein	chr12	13643403	13645335	-	promoter,downstream
28	LOC_Os06g24010	hypothetical protein	gene	hypothetical protein	chr6	14026128	14027622	-	promoter
28	LOC_Os11g22830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12667478	12668368	-	promoter
28	LOC_Os02g29430	expressed protein	gene	expressed protein	chr2	17477770	17478060	+	promoter
28	LOC_Os12g16340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9341522	9348092	+	promoter
28	LOC_Os02g04760	cycloartenol synthase, putative	gene	cycloartenol synthase, putative	chr2	2174423	2178634	-	promoter
28	LOC_Os12g42600	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed	gene	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed	chr12	26421349	26427732	+	promoter
28	LOC_Os05g29860	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr5	17216378	17220257	-	promoter
28	LOC_Os04g13790	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	7687833	7689766	+	promoter,downstream
28	LOC_Os02g25680	expressed protein	gene	expressed protein	chr2	15023589	15028662	-	promoter,downstream
28	LOC_Os07g28410	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	16603677	16605171	+	promoter,downstream
28	LOC_Os12g22090	expressed protein	gene	expressed protein	chr12	12422722	12430108	+	promoter
28	LOC_Os06g49570	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	30016944	30017561	+	promoter
28	LOC_Os04g05230	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2604584	2605402	+	promoter,downstream
28	LOC_Os05g06600	hypothetical protein	gene	hypothetical protein	chr5	3408444	3410848	-	promoter,downstream
28	LOC_Os12g33859	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20384660	20385223	-	promoter
28	LOC_Os03g04169	ATP phosphoribosyltransferase, putative, expressed	gene	ATP phosphoribosyltransferase, putative, expressed	chr3	1908197	1918537	+	promoter
28	LOC_Os11g44084	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	26163461	26166106	+	promoter
28	LOC_Os08g30140	hypothetical protein	gene	hypothetical protein	chr8	18534773	18537472	-	promoter
28	LOC_Os01g44280	expressed protein	gene	expressed protein	chr1	25407788	25410995	-	promoter
28	LOC_Os12g26530	hypothetical protein	gene	hypothetical protein	chr12	15504527	15505789	+	promoter,downstream
28	LOC_Os06g33070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19252175	19256587	+	promoter
28	LOC_Os04g16510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8966668	8972844	+	promoter,downstream
28	LOC_Os06g17620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10233347	10234750	-	promoter,downstream
28	LOC_Os01g60590	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr1	35024560	35026627	-	promoter
28	LOC_Os12g18000	hypothetical protein	gene	hypothetical protein	chr12	10336137	10336340	+	promoter
28	LOC_Os04g29850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17623570	17623800	+	promoter
28	LOC_Os04g30840	hypothetical protein	gene	hypothetical protein	chr4	18257988	18258308	-	promoter,downstream
28	LOC_Os01g40240	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	22704839	22706425	+	promoter
28	LOC_Os06g15900	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	9020415	9021377	+	promoter
28	LOC_Os03g31650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18069456	18074504	-	promoter,downstream
28	LOC_Os03g07290	structural constituent of ribosome, putative, expressed	gene	structural constituent of ribosome, putative, expressed	chr3	3710102	3712268	+	promoter
28	LOC_Os02g18870	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr2	11009375	11014978	+	promoter
28	LOC_Os07g10020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5345831	5347413	+	promoter
28	LOC_Os02g37710	lecithine cholesterol acyltransferase, putative	gene	lecithine cholesterol acyltransferase, putative	chr2	22759893	22760534	-	promoter
28	LOC_Os11g24040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13162188	13163161	+	promoter,downstream
28	LOC_Os04g06670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3506069	3509017	+	promoter,downstream
28	LOC_Os12g24200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13788660	13791841	+	promoter
28	LOC_Os10g07624	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4252048	4252914	-	promoter
28	LOC_Os01g43570	hypothetical protein	gene	hypothetical protein	chr1	24954915	24955232	-	promoter,downstream
28	LOC_Os09g13640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7951823	7952923	-	promoter,downstream
28	LOC_Os01g60980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	35278834	35285555	+	promoter,downstream
28	LOC_Os12g30824	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr12	18481279	18500136	-	promoter
28	LOC_Os04g13380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	7438185	7441884	+	promoter,downstream
28	LOC_Os04g18770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10426309	10431642	+	promoter
28	LOC_Os02g36300	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr2	21911499	21912810	+	promoter
28	LOC_Os02g27400	OsFBX49 - F-box domain containing protein, expressed	gene	OsFBX49 - F-box domain containing protein, expressed	chr2	16144165	16147059	+	promoter
28	LOC_Os11g30930	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	17528108	17530542	-	promoter,downstream
28	LOC_Os03g47810	nodulin family protein, putative, expressed	gene	nodulin family protein, putative, expressed	chr3	27135207	27138669	-	promoter
28	LOC_Os07g11190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6164972	6167242	-	promoter
28	LOC_Os08g10690	hypothetical protein	gene	hypothetical protein	chr8	6296507	6296746	+	promoter
28	LOC_Os02g55747	hypothetical protein	gene	hypothetical protein	chr2	34130203	34130586	+	promoter,downstream
28	LOC_Os08g17060	expressed protein	gene	expressed protein	chr8	10443353	10445897	-	promoter
28	LOC_Os12g16970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9717088	9717585	-	promoter,downstream
28	LOC_Os07g11580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6387132	6387761	+	promoter
28	LOC_Os05g15400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8709628	8713406	+	promoter,downstream
28	LOC_Os03g43190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24085158	24085797	-	promoter,downstream
28	LOC_Os10g03820	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	1725397	1726218	-	promoter
28	LOC_Os03g23770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13472678	13473775	-	promoter,downstream
28	LOC_Os12g28490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16827638	16834357	-	promoter,downstream
28	LOC_Os03g27490	hypothetical protein	gene	hypothetical protein	chr3	15772838	15774751	+	promoter
28	LOC_Os09g27890	lysM domain-containing GPI-anchored protein precursor, putative, expressed	gene	lysM domain-containing GPI-anchored protein precursor, putative, expressed	chr9	16957543	16961180	+	promoter
28	LOC_Os03g33130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18951992	18955109	+	promoter
28	LOC_Os04g38150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	22519466	22520815	-	promoter,downstream
28	LOC_Os02g18020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10457739	10458587	+	promoter
28	LOC_Os01g64949	expressed protein	gene	expressed protein	chr1	37694034	37695442	-	promoter
28	LOC_Os02g38830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23468256	23469458	-	promoter,downstream
28	LOC_Os08g29999	unknown	gene	unknown	chr8	18426012	18427334	-	promoter,downstream
28	LOC_Os09g01170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	165231	168286	+	promoter
28	LOC_Os10g16510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8160958	8161640	-	promoter
28	LOC_Os07g16690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9789904	9792024	+	promoter
28	LOC_Os08g15444	expressed protein	gene	expressed protein	chr8	9394063	9396984	+	promoter
28	LOC_Os03g34150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19450917	19451901	+	promoter,downstream
28	LOC_Os10g14950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7848975	7851472	+	promoter,downstream
28	LOC_Os11g22590	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	12531632	12533442	-	promoter,downstream
28	LOC_Os11g22170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12258805	12259895	-	promoter,downstream
28	LOC_Os12g15880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9046373	9048187	+	promoter
28	LOC_Os01g34770	tetratricopeptide repeat containing protein, putative, expressed	gene	tetratricopeptide repeat containing protein, putative, expressed	chr1	19172863	19175270	+	promoter
28	LOC_Os11g25980	phospholipid-transporting ATPase 2, putative, expressed	gene	phospholipid-transporting ATPase 2, putative, expressed	chr11	14359856	14381249	+	promoter
28	LOC_Os09g11730	hypothetical protein	gene	hypothetical protein	chr9	6541918	6548115	-	promoter
28	LOC_Os12g28380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16776842	16778191	+	promoter,downstream
28	LOC_Os05g08230	hypothetical protein	gene	hypothetical protein	chr5	4478521	4482988	+	promoter
28	LOC_Os06g28010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15900365	15901077	+	promoter
28	LOC_Os10g27470	KH domain containing protein, putative, expressed	gene	KH domain containing protein, putative, expressed	chr10	14415899	14421902	+	promoter
28	LOC_Os02g22000	phosphoglycerate mutase, putative	gene	phosphoglycerate mutase, putative	chr2	13081998	13085777	+	promoter
28	LOC_Os09g03210	expressed protein	gene	expressed protein	chr9	1545433	1548533	+	promoter
28	LOC_Os02g13250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	7056796	7060377	+	promoter
28	LOC_Os06g15470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8780191	8784239	+	promoter
28	LOC_Os04g54270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	32129506	32132742	-	promoter
28	LOC_Os08g20359	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12230181	12233853	-	promoter
28	LOC_Os09g26240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15848808	15856672	-	promoter
28	LOC_Os07g27050	hypothetical protein	gene	hypothetical protein	chr7	15670856	15672027	+	promoter
28	LOC_Os12g28440	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	16803000	16803934	-	promoter,downstream
28	LOC_Os03g20070	hypothetical protein	gene	hypothetical protein	chr3	11306328	11307025	+	promoter
28	LOC_Os05g40480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	23709074	23712406	-	promoter
28	LOC_Os04g18130	hypothetical protein	gene	hypothetical protein	chr4	10014824	10015096	-	promoter,downstream
28	LOC_Os06g33130	hypothetical protein	gene	hypothetical protein	chr6	19283976	19284290	+	promoter
28	LOC_Os09g06960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3361805	3362047	+	promoter,downstream
28	LOC_Os04g32420	hypothetical protein	gene	hypothetical protein	chr4	19268686	19269459	-	promoter
28	LOC_Os07g34420	lipase class 3 family protein, putative	gene	lipase class 3 family protein, putative	chr7	20645992	20646612	+	promoter
28	LOC_Os07g26240	hypothetical protein	gene	hypothetical protein	chr7	15093125	15093361	+	promoter,downstream
28	LOC_Os11g26210	hypothetical protein	gene	hypothetical protein	chr11	14545669	14545920	+	promoter,downstream
28	LOC_Os11g19930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11466747	11468914	+	promoter
28	LOC_Os01g18770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10574906	10575505	-	promoter
28	LOC_Os11g36650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	21163574	21164950	-	promoter
28	LOC_Os10g03160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1335879	1336940	-	promoter,downstream
28	LOC_Os02g50120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30607894	30609043	+	promoter
28	LOC_Os02g12200	kinesin heavy chain, putative	gene	kinesin heavy chain, putative	chr2	6341456	6344410	+	promoter
28	LOC_Os05g25770	OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed	gene	OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed	chr5	14934122	14936343	+	promoter
28	LOC_Os05g22712	chloroplast 30S ribosomal protein S11, putative	gene	chloroplast 30S ribosomal protein S11, putative	chr5	12830352	12830783	-	promoter
28	LOC_Os02g12640	hypothetical protein	gene	hypothetical protein	chr2	6595265	6595657	-	promoter,downstream
28	LOC_Os06g16900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9796426	9800779	+	promoter
28	LOC_Os12g26250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	15296356	15299573	-	promoter,downstream
28	LOC_Os05g33310	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	gene	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	chr5	19463126	19466464	-	promoter
28	LOC_Os12g18350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10594016	10599566	+	promoter,downstream
28	LOC_Os06g15700	expressed protein	gene	expressed protein	chr6	8889919	8902223	+	promoter
28	LOC_Os10g01360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	214310	219604	-	promoter,downstream
28	LOC_Os12g29140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17249352	17249627	+	promoter
28	LOC_Os03g16110	Ser/Thr protein phosphatase family protein, putative, expressed	gene	Ser/Thr protein phosphatase family protein, putative, expressed	chr3	8883104	8888720	+	promoter
28	LOC_Os01g16714	flavin monooxygenase, putative, expressed	gene	flavin monooxygenase, putative, expressed	chr1	9487801	9492940	+	promoter,downstream
28	LOC_Os01g07830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	3754288	3757620	-	promoter
28	LOC_Os04g28740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16850210	16852089	-	promoter,downstream
28	LOC_Os07g13550	hypothetical protein	gene	hypothetical protein	chr7	7762435	7766760	+	promoter
28	LOC_Os10g18364	ZOS10-03 - C2H2 zinc finger protein, expressed	gene	ZOS10-03 - C2H2 zinc finger protein, expressed	chr10	9259466	9265363	+	promoter
28	LOC_Os10g11570	hypothetical protein	gene	hypothetical protein	chr10	6417307	6419050	+	promoter
28	LOC_Os02g14330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7867248	7868039	+	promoter
28	LOC_Os10g04240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	1973243	1976202	-	promoter,downstream
28	LOC_Os08g16500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10108769	10110062	+	promoter,downstream
28	LOC_Os05g17270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9883505	9890224	+	promoter,downstream
28	LOC_Os11g38510	hypothetical protein	gene	hypothetical protein	chr11	22354233	22354525	+	promoter
28	LOC_Os04g22100	BED zinc finger family protein, expressed	gene	BED zinc finger family protein, expressed	chr4	12509189	12511817	-	promoter
28	LOC_Os07g11250	hypothetical protein	gene	hypothetical protein	chr7	6200095	6200953	+	promoter,downstream
28	LOC_Os06g15250	3-ketoacyl-CoA synthase, putative	gene	3-ketoacyl-CoA synthase, putative	chr6	8644292	8645806	-	promoter
28	LOC_Os08g15100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9149825	9153395	+	promoter
28	LOC_Os01g22120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12416782	12418704	+	promoter
28	LOC_Os02g49390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30170408	30176634	-	promoter,downstream
28	LOC_Os01g29200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16360605	16360910	+	promoter,downstream
28	LOC_Os02g51210	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	31332239	31332490	+	promoter,downstream
28	LOC_Os09g16840	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	10279917	10281191	-	promoter
28	LOC_Os05g45640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26390675	26393276	+	promoter
28	LOC_Os06g23440	eukaryotic translation initiation factor 1A, putative, expressed	gene	eukaryotic translation initiation factor 1A, putative, expressed	chr6	13684423	13685181	+	promoter
28	LOC_Os09g17700	hypothetical protein	gene	hypothetical protein	chr9	10825013	10825249	+	promoter,downstream
28	LOC_Os01g46330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	26353689	26357389	+	promoter,downstream
28	LOC_Os12g29209	unknown	gene	unknown	chr12	17288671	17289097	+	promoter
28	LOC_Os02g49900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	30479221	30485346	-	promoter,downstream
28	LOC_Os01g35410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	19587982	19590301	+	promoter,downstream
28	LOC_Os08g15370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9361590	9364049	+	promoter
28	LOC_Os07g45269	unknown	gene	unknown	chr7	27010482	27010709	+	promoter
28	LOC_Os05g52046	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	29818618	29819190	-	promoter,downstream
28	LOC_Os04g13450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7483467	7484665	-	promoter
28	LOC_Os03g52750	cyclin, putative, expressed	gene	cyclin, putative, expressed	chr3	30228922	30234229	+	promoter
28	LOC_Os10g36810	plus-3 domain containing protein, putative, expressed	gene	plus-3 domain containing protein, putative, expressed	chr10	19632244	19642072	+	promoter
28	LOC_Os12g13270	expressed protein	gene	expressed protein	chr12	7372403	7382001	-	promoter
28	LOC_Os11g32930	hypothetical protein	gene	hypothetical protein	chr11	18981814	18982506	+	promoter
28	LOC_Os06g24780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14553147	14553971	+	promoter,downstream
28	LOC_Os05g17320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9920197	9926945	-	promoter,downstream
28	LOC_Os05g17790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10224974	10227284	+	promoter,downstream
28	LOC_Os06g35300	polygalacturonase, putative	gene	polygalacturonase, putative	chr6	20580983	20582061	-	promoter
28	LOC_Os10g13360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7229328	7229981	+	promoter,downstream
28	LOC_Os08g25880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15760898	15763076	+	promoter
28	LOC_Os10g15330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8055214	8056675	+	promoter
28	LOC_Os07g24569	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	13986813	13987055	+	promoter,downstream
28	LOC_Os01g24990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14084808	14086009	+	promoter,downstream
28	LOC_Os01g39960	lycopene epsilon cyclase, chloroplast precursor, putative, expressed	gene	lycopene epsilon cyclase, chloroplast precursor, putative, expressed	chr1	22533954	22537698	+	promoter
28	LOC_Os05g39790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	23312105	23315039	-	promoter
28	LOC_Os07g16790	hypothetical protein	gene	hypothetical protein	chr7	9851537	9853468	+	promoter
28	LOC_Os12g19690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11467615	11469811	+	promoter
28	LOC_Os05g27540	pattern formation protein EMB30, putative	gene	pattern formation protein EMB30, putative	chr5	15968781	15970314	+	promoter
28	LOC_Os11g25130	expressed protein	gene	expressed protein	chr11	13848521	13850962	-	promoter
28	LOC_Os11g18470	hypothetical protein	gene	hypothetical protein	chr11	10411064	10412181	-	promoter,downstream
28	LOC_Os09g26550	protease Do-like 14, putative, expressed	gene	protease Do-like 14, putative, expressed	chr9	16048137	16058300	+	promoter
28	LOC_Os12g14920	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	8533736	8536001	+	promoter
28	LOC_Os02g24760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	14357062	14357741	+	promoter
28	LOC_Os12g33460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20191867	20197106	-	promoter
28	LOC_Os11g23190	hypothetical protein	gene	hypothetical protein	chr11	12886713	12889184	+	promoter
28	LOC_Os03g33990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19392263	19392694	-	promoter,downstream
28	LOC_Os10g24560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12531917	12538666	+	promoter,downstream
28	LOC_Os10g11420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6340870	6342610	+	promoter
28	LOC_Os08g20090	expressed protein	gene	expressed protein	chr8	12042347	12044838	+	promoter
28	LOC_Os09g28270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17166042	17167607	+	promoter
28	LOC_Os05g27210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15766966	15768324	-	promoter,downstream
28	LOC_Os03g49540	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	28206497	28208990	-	promoter
28	LOC_Os01g31650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17325848	17327192	+	promoter
28	LOC_Os11g19680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	11326033	11326467	-	promoter,downstream
28	LOC_Os08g12290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7231406	7238160	-	promoter,downstream
28	LOC_Os08g33560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20950444	20953787	+	promoter
28	LOC_Os10g14860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7792723	7794322	+	promoter
28	LOC_Os08g16110	hypothetical protein	gene	hypothetical protein	chr8	9819243	9820624	-	promoter
28	LOC_Os10g25090	STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed	gene	STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed	chr10	12851773	12857280	-	promoter
28	LOC_Os03g37234	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	20633296	20633926	+	promoter,downstream
28	LOC_Os11g28790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16221879	16224699	+	promoter,downstream
28	LOC_Os07g25400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14515871	14516110	+	promoter,downstream
28	LOC_Os09g10230	Skp1 family, dimerisation domain containing protein	gene	Skp1 family, dimerisation domain containing protein	chr9	5573829	5574332	-	promoter,downstream
28	LOC_Os04g21770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12309043	12309714	-	promoter,downstream
28	LOC_Os02g50100	SET domain-containing protein, putative, expressed	gene	SET domain-containing protein, putative, expressed	chr2	30587626	30590354	+	promoter
28	LOC_Os08g11580	hypothetical protein	gene	hypothetical protein	chr8	6778686	6779246	-	promoter
28	LOC_Os04g04830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2320944	2323837	+	promoter,downstream
28	LOC_Os07g31410	expressed protein	gene	expressed protein	chr7	18605154	18605789	+	promoter
28	LOC_Os11g07170	receptor kinase, putative, expressed	gene	receptor kinase, putative, expressed	chr11	3576994	3580062	+	promoter
28	LOC_Os02g07540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	3902055	3908150	-	promoter
28	LOC_Os04g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12428362	12428649	+	promoter
28	LOC_Os06g47380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	28712293	28718382	-	promoter
28	LOC_Os01g35810	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	19831366	19832097	+	promoter
28	LOC_Os04g11670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6396660	6397649	+	promoter,downstream
28	LOC_Os07g01510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	319065	322322	-	promoter
28	LOC_Os10g05820	POEI5 - Pollen Ole e I allergen and extensin family protein precursor, expressed	gene	POEI5 - Pollen Ole e I allergen and extensin family protein precursor, expressed	chr10	2940778	2941942	-	promoter
28	LOC_Os01g58010	ATP synthase, A subunit family protein, putative	gene	ATP synthase, A subunit family protein, putative	chr1	33548421	33549404	+	promoter
28	LOC_Os07g46120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	27522722	27526422	+	promoter
28	LOC_Os01g39136	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	22030163	22032966	-	promoter,downstream
28	LOC_Os12g33740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20329800	20330480	+	promoter,downstream
28	LOC_Os08g04050	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	1963260	1964382	+	promoter,downstream
28	LOC_Os01g31050	hypothetical protein	gene	hypothetical protein	chr1	16981122	16981961	+	promoter,downstream
28	LOC_Os03g39470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	21928015	21929884	+	promoter,downstream
28	LOC_Os08g06830	hypothetical protein	gene	hypothetical protein	chr8	3815028	3816447	+	promoter
28	LOC_Os05g11040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6184980	6189631	-	promoter
28	LOC_Os08g10860	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6392178	6393185	+	promoter,downstream
28	LOC_Os03g48040	2Fe-2S iron-sulfur cluster binding domain containing protein, expressed	gene	2Fe-2S iron-sulfur cluster binding domain containing protein, expressed	chr3	27302910	27305957	+	promoter
28	LOC_Os05g19520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11343468	11347142	+	promoter,downstream
28	LOC_Os07g14200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8096117	8096488	+	promoter,downstream
28	LOC_Os02g36020	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	21629097	21639191	-	promoter,downstream
28	LOC_Os01g33450	expressed protein	gene	expressed protein	chr1	18415874	18417398	+	promoter
28	LOC_Os08g10830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6373695	6376442	+	promoter,downstream
28	LOC_Os01g49090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	28217413	28219171	+	promoter
28	LOC_Os04g24010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	13714582	13715144	+	promoter
28	LOC_Os07g04100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	1737007	1737951	-	promoter,downstream
28	LOC_Os08g10400	expressed protein	gene	expressed protein	chr8	6101978	6104403	-	promoter
28	LOC_Os02g19880	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	11693449	11698944	+	promoter
28	LOC_Os12g34750	hypothetical protein	gene	hypothetical protein	chr12	21064829	21065074	-	promoter,downstream
28	LOC_Os11g16740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	9269663	9269971	+	promoter,downstream
28	LOC_Os02g05110	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2439556	2442914	+	promoter
28	LOC_Os11g31610	hypothetical protein	gene	hypothetical protein	chr11	18007790	18008149	-	promoter
28	LOC_Os01g40040	hypothetical protein	gene	hypothetical protein	chr1	22586458	22588931	-	promoter
28	LOC_Os12g08530	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	4323450	4324050	-	promoter
28	LOC_Os03g07070	hypothetical protein	gene	hypothetical protein	chr3	3605928	3607253	-	promoter
28	LOC_Os04g47670	expressed protein	gene	expressed protein	chr4	28098933	28100068	+	promoter
28	LOC_Os09g04760	hypothetical protein	gene	hypothetical protein	chr9	2534378	2534764	-	promoter,downstream
28	LOC_Os06g31570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18358782	18362206	+	promoter
28	LOC_Os11g09300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	4978545	4984107	-	promoter
28	LOC_Os07g46750	elongation factor protein, putative, expressed	gene	elongation factor protein, putative, expressed	chr7	27940763	27943320	+	promoter
28	LOC_Os12g10120	ligA, putative	gene	ligA, putative	chr12	5355356	5355805	+	promoter,downstream
28	LOC_Os02g49410	histone-like transcription factor and archaeal histone, putative, expressed	gene	histone-like transcription factor and archaeal histone, putative, expressed	chr2	30185602	30186620	-	promoter
28	LOC_Os10g32750	zinc finger family protein, putative	gene	zinc finger family protein, putative	chr10	17081717	17083537	-	promoter
28	LOC_Os01g27960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15630584	15633673	+	promoter,downstream
28	LOC_Os07g45880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27374080	27378361	+	promoter
28	LOC_Os04g06210	cysteine-rich receptor-like protein kinase 36 precursor, putative	gene	cysteine-rich receptor-like protein kinase 36 precursor, putative	chr4	3218429	3219072	+	promoter
28	LOC_Os03g35840	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	19856696	19859427	-	promoter
28	LOC_Os03g31340	protein transport protein SEC61 subunit gamma, putative	gene	protein transport protein SEC61 subunit gamma, putative	chr3	17857966	17858263	-	promoter
28	LOC_Os07g17450	hypothetical protein	gene	hypothetical protein	chr7	10297976	10299013	+	promoter
28	LOC_Os05g01660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	393877	396523	+	promoter,downstream
28	LOC_Os07g24700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14050948	14056082	+	promoter
28	LOC_Os11g40270	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	23547024	23547458	+	promoter
28	LOC_Os02g34530	OsPDIL5-3  protein disulfide isomerase PDIL5-3, expressed	gene	OsPDIL5-3  protein disulfide isomerase PDIL5-3, expressed	chr2	20694520	20696830	+	promoter
28	LOC_Os07g19470	uncharacterized ACR, YggU family COG1872 containing protein, expressed	gene	uncharacterized ACR, YggU family COG1872 containing protein, expressed	chr7	11512909	11517213	-	promoter
28	LOC_Os08g23040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13869073	13869840	+	promoter,downstream
28	LOC_Os07g46630	AMP deaminase, putative, expressed	gene	AMP deaminase, putative, expressed	chr7	27864033	27867239	+	promoter
28	LOC_Os06g35610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	20775767	20776162	+	promoter,downstream
28	LOC_Os12g26780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15684903	15688613	+	promoter,downstream
28	LOC_Os12g09030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4719819	4720796	-	promoter,downstream
28	LOC_Os12g01350	csAtPR5, putative, expressed	gene	csAtPR5, putative, expressed	chr12	203476	206191	+	promoter
28	LOC_Os05g22600	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	12768355	12773777	+	promoter
28	LOC_Os11g33462	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19343121	19343807	-	promoter,downstream
28	LOC_Os02g15810	HMG1/2, putative, expressed	gene	HMG1/2, putative, expressed	chr2	8935090	8937179	-	promoter
28	LOC_Os06g27810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15751869	15753320	-	promoter
28	LOC_Os04g02280	OsFBX114 - F-box domain containing protein, expressed	gene	OsFBX114 - F-box domain containing protein, expressed	chr4	792538	798310	-	promoter
28	LOC_Os10g15300	expressed protein	gene	expressed protein	chr10	8042620	8043480	+	promoter
28	LOC_Os09g03820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1937703	1938074	+	promoter
28	LOC_Os03g12610	DNA polymerase I, putative, expressed	gene	DNA polymerase I, putative, expressed	chr3	6697273	6705866	+	promoter
28	LOC_Os05g19490	hypothetical protein	gene	hypothetical protein	chr5	11333304	11333910	+	promoter
28	LOC_Os09g13790	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8080459	8084415	+	promoter
28	LOC_Os01g18270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10253802	10259588	-	promoter
28	LOC_Os05g18930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10986573	10988834	-	promoter
28	LOC_Os08g11440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6706426	6707734	-	promoter,downstream
28	LOC_Os04g27680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16191465	16194411	-	promoter
28	LOC_Os03g38140	hypothetical protein	gene	hypothetical protein	chr3	21175905	21176971	+	promoter
28	LOC_Os08g11430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6699182	6703363	+	promoter,downstream
28	LOC_Os06g41760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	25037385	25038575	-	promoter,downstream
28	LOC_Os05g18520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10707513	10711574	+	promoter,downstream
28	LOC_Os11g17760	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	9919015	9923923	+	promoter
28	LOC_Os08g12090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	7121226	7122653	-	promoter,downstream
28	LOC_Os12g13500	hypothetical protein	gene	hypothetical protein	chr12	7580100	7580585	+	promoter,downstream
28	LOC_Os12g23740	hypothetical protein	gene	hypothetical protein	chr12	13467197	13468114	+	promoter,downstream
28	LOC_Os03g05580	hypothetical protein	gene	hypothetical protein	chr3	2792540	2793220	+	promoter
28	LOC_Os10g01870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	561651	563700	+	promoter,downstream
28	LOC_Os05g09220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5152055	5154802	-	promoter,downstream
28	LOC_Os02g04369	expressed protein	gene	expressed protein	chr2	1928625	1929506	+	promoter
28	LOC_Os07g29900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17593346	17593759	-	promoter,downstream
28	LOC_Os11g43010	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	25454956	25456077	+	promoter
28	LOC_Os11g35950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20651937	20653736	+	promoter
28	LOC_Os06g23030	ZF-HD protein dimerisation region containing protein, expressed	gene	ZF-HD protein dimerisation region containing protein, expressed	chr6	13438149	13438923	-	promoter
28	LOC_Os11g41490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	24420401	24423516	-	promoter
28	LOC_Os11g43880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26025562	26025885	-	promoter
28	LOC_Os03g03690	glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed	gene	glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed	chr3	1640565	1645412	+	promoter
28	LOC_Os09g36470	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	21045812	21049549	+	promoter
28	LOC_Os01g18200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10184154	10187318	+	promoter
28	LOC_Os05g15570	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8814833	8816893	-	promoter,downstream
28	LOC_Os09g13100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7541880	7545546	+	promoter
28	LOC_Os06g44640	hypothetical protein	gene	hypothetical protein	chr6	26953367	26954288	+	promoter
28	LOC_Os11g36120	receptor-like protein kinase precursor, putative	gene	receptor-like protein kinase precursor, putative	chr11	20766517	20769145	-	promoter
28	LOC_Os09g27540	C2 domain containing protein	gene	C2 domain containing protein	chr9	16732702	16737889	-	promoter
28	LOC_Os01g44010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25217288	25217815	+	promoter,downstream
28	LOC_Os03g37730	expressed protein	gene	expressed protein	chr3	20922091	20924025	+	promoter
28	LOC_Os04g01590	arginase, putative, expressed	gene	arginase, putative, expressed	chr4	395479	399945	+	promoter
28	LOC_Os02g24095	unknown	gene	unknown	chr2	13956195	13960112	-	promoter
28	LOC_Os12g23070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13036812	13037817	-	promoter,downstream
28	LOC_Os11g26300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	14592864	14598325	-	promoter,downstream
28	LOC_Os10g02800	glycine-rich cell wall structural transmembrane protein, putative	gene	glycine-rich cell wall structural transmembrane protein, putative	chr10	1115833	1116640	+	promoter
28	LOC_Os07g42790	caltractin, putative	gene	caltractin, putative	chr7	25632676	25633572	+	promoter
28	LOC_Os05g23170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13159350	13160753	-	promoter,downstream
28	LOC_Os03g30334	hypothetical protein	gene	hypothetical protein	chr3	17303126	17304736	+	promoter
28	LOC_Os11g44100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	26166670	26168880	+	promoter
28	LOC_Os08g36300	hypothetical protein	gene	hypothetical protein	chr8	22869114	22869720	-	promoter
28	LOC_Os01g29310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16423317	16424375	+	promoter
28	LOC_Os07g11170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6158616	6159608	+	promoter
28	LOC_Os09g02240	hypothetical protein	gene	hypothetical protein	chr9	899864	900142	+	promoter
28	LOC_Os04g02240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	773779	776775	+	promoter
28	LOC_Os12g26810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15701349	15703209	+	promoter,downstream
28	LOC_Os02g54950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	33654555	33656116	-	promoter
28	LOC_Os12g31210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18762529	18764217	-	promoter,downstream
28	LOC_Os07g43110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25832881	25835869	-	promoter
28	LOC_Os12g23754	expressed protein	gene	expressed protein	chr12	13484651	13488071	+	promoter
28	LOC_Os01g29570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	16571170	16571817	+	promoter
28	LOC_Os02g45120	expressed protein	gene	expressed protein	chr2	27363240	27365953	+	promoter
28	LOC_Os04g21210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11944130	11950848	+	promoter,downstream
28	LOC_Os03g38890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	21607876	21608508	-	promoter
28	LOC_Os03g02890	expressed protein	gene	expressed protein	chr3	1136127	1140060	+	promoter
28	LOC_Os10g15164	expressed protein	gene	expressed protein	chr10	7969224	7973666	-	promoter
28	LOC_Os06g38030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22480071	22481329	+	promoter
28	LOC_Os09g08760	hypothetical protein	gene	hypothetical protein	chr9	4621469	4621852	+	promoter,downstream
28	LOC_Os11g26280	hypothetical protein	gene	hypothetical protein	chr11	14586024	14586431	+	promoter,downstream
28	LOC_Os11g28360	ubiquitin carboxyl-terminal hydrolase 5, putative, expressed	gene	ubiquitin carboxyl-terminal hydrolase 5, putative, expressed	chr11	15851749	15856205	+	promoter
28	LOC_Os07g02070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	645220	647262	-	promoter
28	LOC_Os01g24240	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	13660976	13663748	+	promoter
28	LOC_Os08g17390	expressed protein	gene	expressed protein	chr8	10629313	10633379	+	promoter
28	LOC_Os01g11880	DJ-1 family protein, putative, expressed	gene	DJ-1 family protein, putative, expressed	chr1	6431336	6435086	+	promoter
28	LOC_Os04g31510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	18667486	18670342	-	promoter
28	LOC_Os05g27920	phox domain-containing protein, putative, expressed	gene	phox domain-containing protein, putative, expressed	chr5	16231726	16239175	+	promoter
28	LOC_Os01g32490	hypothetical protein	gene	hypothetical protein	chr1	17816729	17817672	+	promoter
28	LOC_Os08g23560	hypothetical protein	gene	hypothetical protein	chr8	14255586	14256358	-	promoter
28	LOC_Os04g49329	unknown	gene	unknown	chr4	29261487	29262126	-	promoter
28	LOC_Os11g37060	OsFBDUF52 - F-box and DUF domain containing protein, expressed	gene	OsFBDUF52 - F-box and DUF domain containing protein, expressed	chr11	21415487	21416850	+	promoter
28	LOC_Os04g05340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2651757	2655522	-	promoter
28	LOC_Os07g26920	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	15594802	15595975	+	promoter
28	LOC_Os04g50176	expressed protein	gene	expressed protein	chr4	29753779	29754819	+	promoter
28	LOC_Os07g31750	chalcone synthase, putative	gene	chalcone synthase, putative	chr7	18851479	18855439	-	promoter
28	LOC_Os10g22170	expressed protein	gene	expressed protein	chr10	11389108	11393072	+	promoter
28	LOC_Os09g12680	hypothetical protein	gene	hypothetical protein	chr9	7256831	7257067	+	promoter,downstream
28	LOC_Os11g14830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8339901	8341366	+	promoter
28	LOC_Os12g19230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11154160	11154480	+	promoter,downstream
28	LOC_Os05g04440	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr5	2044977	2046437	+	promoter
28	LOC_Os03g03250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	1384810	1390916	-	promoter
28	LOC_Os11g29200	protein transport protein, putative, expressed	gene	protein transport protein, putative, expressed	chr11	16460663	16472036	+	promoter
28	LOC_Os08g11860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6956037	6956798	-	promoter,downstream
28	LOC_Os05g19710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	11493256	11494576	-	promoter,downstream
28	LOC_Os11g19420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11157902	11162428	+	promoter,downstream
28	LOC_Os08g19300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11541306	11542300	-	promoter,downstream
28	LOC_Os09g04180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2199345	2201157	+	promoter,downstream
28	LOC_Os03g44990	hypothetical protein	gene	hypothetical protein	chr3	25399385	25400677	-	promoter
28	LOC_Os12g34600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20937813	20938448	+	promoter
28	LOC_Os05g47750	Ser/Thr protein kinase, putative, expressed	gene	Ser/Thr protein kinase, putative, expressed	chr5	27290833	27294975	-	promoter
28	LOC_Os02g49030	tyrosyl-tRNA synthetase, putative	gene	tyrosyl-tRNA synthetase, putative	chr2	29971431	29972734	-	promoter
28	LOC_Os04g25009	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14408792	14410771	+	promoter
28	LOC_Os12g20090	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	11676363	11676878	-	promoter
28	LOC_Os06g17720	hypothetical protein	gene	hypothetical protein	chr6	10284700	10285742	-	promoter
28	LOC_Os06g26234	1,4-alpha-glucan-branching enzyme, putative, expressed	gene	1,4-alpha-glucan-branching enzyme, putative, expressed	chr6	15334688	15364532	+	promoter
28	LOC_Os09g05120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2744901	2749554	+	promoter
28	LOC_Os02g16370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9323236	9324669	+	promoter,downstream
28	LOC_Os01g45040	Leucine rich repeat N-terminal domain containing protein, putative	gene	Leucine rich repeat N-terminal domain containing protein, putative	chr1	25562203	25565962	-	promoter,downstream
28	LOC_Os03g21320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	12198743	12200205	-	promoter
28	LOC_Os06g15160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8590631	8591158	+	promoter
28	LOC_Os08g13390	expressed protein	gene	expressed protein	chr8	7962632	7967550	-	promoter
28	LOC_Os06g33380	hypothetical protein	gene	hypothetical protein	chr6	19442466	19442869	+	promoter
28	LOC_Os01g63393	hypothetical protein	gene	hypothetical protein	chr1	36729665	36729988	+	promoter
28	LOC_Os04g13330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7406096	7407445	-	promoter,downstream
28	LOC_Os02g30230	exo70 exocyst complex subunit domain containing protein, expressed	gene	exo70 exocyst complex subunit domain containing protein, expressed	chr2	17969420	17975238	+	promoter
28	LOC_Os08g06980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	3885405	3886501	+	promoter
28	LOC_Os12g29720	hypothetical protein	gene	hypothetical protein	chr12	17716855	17718664	+	promoter
28	LOC_Os05g26564	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15376445	15377041	+	promoter
28	LOC_Os02g16000	E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed	gene	E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed	chr2	9082727	9088011	+	promoter,downstream
28	LOC_Os06g36299	unknown	gene	unknown	chr6	21266118	21266824	-	promoter,downstream
28	LOC_Os01g40750	expressed protein	gene	expressed protein	chr1	23021998	23025072	-	promoter
28	LOC_Os12g28360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16765558	16771713	+	promoter
28	LOC_Os04g26400	hypothetical protein	gene	hypothetical protein	chr4	15386714	15388524	-	promoter
28	LOC_Os08g29570	pleiotropic drug resistance protein 3, putative, expressed	gene	pleiotropic drug resistance protein 3, putative, expressed	chr8	18125821	18130344	-	promoter
28	LOC_Os11g07660	hypothetical protein	gene	hypothetical protein	chr11	3909167	3909636	+	promoter
28	LOC_Os05g23010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13066389	13070953	-	promoter,downstream
28	LOC_Os08g29854	RGH1A, putative, expressed	gene	RGH1A, putative, expressed	chr8	18343152	18356324	+	promoter
28	LOC_Os04g12380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6825030	6826754	-	promoter,downstream
28	LOC_Os05g01675	photosystem I P700 chlorophyll a apoprotein A1, putative	gene	photosystem I P700 chlorophyll a apoprotein A1, putative	chr5	406167	408419	-	promoter
28	LOC_Os09g13090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7539663	7541396	+	promoter
28	LOC_Os03g52120	DNA binding protein, putative, expressed	gene	DNA binding protein, putative, expressed	chr3	29920604	29923927	+	promoter
28	LOC_Os10g24970	hypothetical protein	gene	hypothetical protein	chr10	12784117	12784599	-	promoter
28	LOC_Os06g32280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18791768	18795468	+	promoter
28	LOC_Os09g10310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5619905	5621325	-	promoter,downstream
28	LOC_Os08g28328	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17283583	17286089	-	promoter,downstream
28	LOC_Os04g07390	hypothetical protein	gene	hypothetical protein	chr4	3933495	3934085	+	promoter,downstream
28	LOC_Os01g35760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19808657	19810224	+	promoter
28	LOC_Os10g22394	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11517569	11523942	+	promoter
28	LOC_Os09g09180	hypothetical protein	gene	hypothetical protein	chr9	4913542	4914021	+	promoter
28	LOC_Os11g12120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6753758	6757897	-	promoter
28	LOC_Os12g22250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12533625	12540291	+	promoter,downstream
28	LOC_Os10g07380	hypothetical protein	gene	hypothetical protein	chr10	3890889	3895629	-	promoter
28	LOC_Os03g40690	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr3	22622645	22626973	+	promoter
28	LOC_Os03g15990	EDM2, putative	gene	EDM2, putative	chr3	8813960	8816282	+	promoter
28	LOC_Os08g18120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11111341	11112330	+	promoter,downstream
28	LOC_Os05g20310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11902021	11908099	-	promoter
28	LOC_Os12g01380	 proteins of unknown function domain containing protein, expressed	gene	 proteins of unknown function domain containing protein, expressed	chr12	241968	246389	+	promoter
28	LOC_Os10g19990	hypothetical protein	gene	hypothetical protein	chr10	9957319	9958547	-	promoter,downstream
28	LOC_Os05g25210	expressed protein	gene	expressed protein	chr5	14556841	14562484	+	promoter
28	LOC_Os03g24460	aminotransferase domain containing protein, putative, expressed	gene	aminotransferase domain containing protein, putative, expressed	chr3	13940061	13947499	-	promoter
28	LOC_Os02g15910	hypothetical protein	gene	hypothetical protein	chr2	9009848	9010538	+	promoter
28	LOC_Os02g06750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	3403547	3406482	-	promoter
28	LOC_Os04g06020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3117607	3118510	-	promoter,downstream
28	LOC_Os05g41050	expressed protein	gene	expressed protein	chr5	23992136	23992966	-	promoter
28	LOC_Os10g08690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4731215	4731460	-	promoter,downstream
28	LOC_Os12g31280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18796503	18798050	+	promoter
28	LOC_Os02g55738	hypothetical protein	gene	hypothetical protein	chr2	34127623	34128006	+	promoter,downstream
28	LOC_Os08g19440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11612516	11614343	+	promoter,downstream
28	LOC_Os01g51960	hypothetical protein	gene	hypothetical protein	chr1	29867863	29868210	-	promoter
28	LOC_Os05g30830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17831455	17834487	-	promoter,downstream
28	LOC_Os05g17460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10027893	10031212	-	promoter,downstream
28	LOC_Os07g10260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5510482	5510736	-	promoter
28	LOC_Os08g21520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12820017	12822086	+	promoter,downstream
28	LOC_Os03g36500	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	20215196	20216733	+	promoter,downstream
28	LOC_Os08g28510	hypothetical protein	gene	hypothetical protein	chr8	17402510	17407613	-	promoter
28	LOC_Os11g30159	unknown	gene	unknown	chr11	17066925	17068770	+	promoter
28	LOC_Os11g03100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1105467	1108768	-	promoter,downstream
28	LOC_Os01g06210	gibberellin receptor GID1L2, putative	gene	gibberellin receptor GID1L2, putative	chr1	2953514	2954504	-	promoter
28	LOC_Os03g47604	unknown	gene	unknown	chr3	26942829	26943519	+	promoter
28	LOC_Os06g34420	DEAD/DEAH box helicase domain protein, putative	gene	DEAD/DEAH box helicase domain protein, putative	chr6	20024975	20030158	+	promoter
28	LOC_Os01g01250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	117081	119671	+	promoter
28	LOC_Os03g52450	GATA transcription factor 25, putative, expressed	gene	GATA transcription factor 25, putative, expressed	chr3	30087331	30092131	-	promoter
28	LOC_Os03g44740	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr3	25217773	25219607	-	promoter
28	LOC_Os03g16650	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	9185369	9186347	-	promoter
28	LOC_Os05g19200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11142604	11147253	-	promoter,downstream
28	LOC_Os02g45440	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	27640872	27642466	+	promoter
28	LOC_Os08g29280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	17943740	17944563	+	promoter
28	LOC_Os03g46454	metal cation transporter, putative, expressed	gene	metal cation transporter, putative, expressed	chr3	26274320	26275225	-	promoter
28	LOC_Os10g02470	deoxymugineic acid synthase1, putative	gene	deoxymugineic acid synthase1, putative	chr10	903324	905998	+	promoter
28	LOC_Os12g08320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	4230247	4231580	+	promoter
28	LOC_Os07g30090	actin-depolymerizing factor, putative, expressed	gene	actin-depolymerizing factor, putative, expressed	chr7	17739695	17741322	+	promoter
28	LOC_Os07g04740	hypothetical protein	gene	hypothetical protein	chr7	2110368	2110708	+	promoter
28	LOC_Os07g42560	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	25465057	25466732	-	promoter
28	LOC_Os12g05510	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	2520695	2522452	-	promoter
28	LOC_Os06g40660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24241049	24241570	-	promoter,downstream
28	LOC_Os01g36920	DEAD-box ATP-dependent RNA helicase, putative, expressed	gene	DEAD-box ATP-dependent RNA helicase, putative, expressed	chr1	20569908	20575176	+	promoter
28	LOC_Os03g32840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18784837	18785304	+	promoter,downstream
28	LOC_Os04g11490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6279574	6280778	-	promoter
28	LOC_Os10g11170	hypothetical protein	gene	hypothetical protein	chr10	6203084	6204286	-	promoter
28	LOC_Os12g20120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11700404	11700877	-	promoter,downstream
28	LOC_Os09g16140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9842456	9842881	+	promoter,downstream
28	LOC_Os11g34790	expressed protein	gene	expressed protein	chr11	19915760	19919485	+	promoter
28	LOC_Os11g47434	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28044402	28047352	+	promoter
28	LOC_Os09g28960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17615112	17617684	+	promoter
28	LOC_Os06g37870	hypothetical protein	gene	hypothetical protein	chr6	22424407	22424847	+	promoter,downstream
28	LOC_Os04g22709	unknown	gene	unknown	chr4	12861257	12861553	-	promoter
28	LOC_Os02g41696	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	25030624	25031739	-	promoter
28	LOC_Os06g51500	expressed protein	gene	expressed protein	chr6	31203031	31205390	-	promoter
28	LOC_Os07g16460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9640779	9645097	-	promoter,downstream
28	LOC_Os05g26530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15357404	15359055	+	promoter,downstream
28	LOC_Os03g34270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19505309	19508618	-	promoter
28	LOC_Os03g36400	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr3	20175745	20176764	-	promoter
28	LOC_Os03g36390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20174617	20175066	+	promoter
28	LOC_Os05g27420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15883405	15884286	-	promoter,downstream
28	LOC_Os08g17760	hypothetical protein	gene	hypothetical protein	chr8	10874237	10878447	-	promoter
28	LOC_Os10g02450	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	894742	895143	-	promoter,downstream
28	LOC_Os10g09040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4907396	4907596	-	promoter,downstream
28	LOC_Os09g25240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15113632	15117605	-	promoter,downstream
28	LOC_Os12g19730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11489946	11491366	+	promoter,downstream
28	LOC_Os09g14230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8415045	8415869	-	promoter
28	LOC_Os02g30310	ThiF family domain containing protein, putative, expressed	gene	ThiF family domain containing protein, putative, expressed	chr2	18033211	18044014	+	promoter
28	LOC_Os12g26410	expressed protein	gene	expressed protein	chr12	15430246	15431777	-	promoter
28	LOC_Os08g11810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6927068	6930112	+	promoter
28	LOC_Os04g25770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14932349	14934517	-	promoter
28	LOC_Os04g13250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7338408	7339382	+	promoter
28	LOC_Os07g31160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18438162	18442283	+	promoter
28	LOC_Os08g03980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1901983	1904304	-	promoter
28	LOC_Os01g37825	M16 domain containing zinc peptidase, putative, expressed	gene	M16 domain containing zinc peptidase, putative, expressed	chr1	21158027	21166532	+	promoter
28	LOC_Os01g22860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12843720	12844322	+	promoter,downstream
28	LOC_Os11g09474	OsFBX400 - F-box domain containing protein, expressed	gene	OsFBX400 - F-box domain containing protein, expressed	chr11	5076073	5084306	-	promoter
28	LOC_Os05g23640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13502187	13502672	+	promoter
28	LOC_Os06g17220	UDP-glycosyltransferase, putative, expressed	gene	UDP-glycosyltransferase, putative, expressed	chr6	9973992	9975881	+	promoter
28	LOC_Os06g38830	receptor-like protein kinase precursor, putative, expressed	gene	receptor-like protein kinase precursor, putative, expressed	chr6	23048806	23051319	-	promoter
28	LOC_Os04g04914	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2363231	2367854	+	promoter
28	LOC_Os03g56682	DEFL40 - Defensin and Defensin-like DEFL family	gene	DEFL40 - Defensin and Defensin-like DEFL family	chr3	32281611	32282341	-	promoter
28	LOC_Os07g08640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	4452602	4453600	+	promoter
28	LOC_Os05g48489	hypothetical protein	gene	hypothetical protein	chr5	27729728	27731100	-	promoter
28	LOC_Os04g35470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21411865	21413459	-	promoter
28	LOC_Os06g34564	mucin, putative	gene	mucin, putative	chr6	20101691	20103442	-	promoter,downstream
28	LOC_Os04g27440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16058409	16058823	-	promoter
28	LOC_Os01g38460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21614316	21616535	+	promoter,downstream
28	LOC_Os12g20410	matrix attachment region binding protein, putative, expressed	gene	matrix attachment region binding protein, putative, expressed	chr12	11912722	11916076	+	promoter
28	LOC_Os04g20054	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11161513	11165958	-	promoter
28	LOC_Os04g49110	GRAS family transcription factor domain containing protein, expressed	gene	GRAS family transcription factor domain containing protein, expressed	chr4	29089883	29092126	-	promoter
28	LOC_Os07g25220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14417467	14418263	+	promoter,downstream
28	LOC_Os01g53320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	30639715	30642060	+	promoter,downstream
28	LOC_Os04g25040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14430084	14435474	-	promoter,downstream
28	LOC_Os12g07760	hypothetical protein	gene	hypothetical protein	chr12	3908135	3908659	+	promoter
28	LOC_Os10g02600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	991623	993939	+	promoter
28	LOC_Os12g20210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11780181	11785834	-	promoter,downstream
28	LOC_Os05g05870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	2948533	2949165	-	promoter,downstream
28	LOC_Os03g04910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	2356295	2357530	+	promoter,downstream
28	LOC_Os01g57190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	33043136	33043759	-	promoter
28	LOC_Os12g33480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	20203479	20203976	-	promoter,downstream
28	LOC_Os09g07830	acetyl-CoA acetyltransferase, cytosolic, putative, expressed	gene	acetyl-CoA acetyltransferase, cytosolic, putative, expressed	chr9	3969052	3974828	+	promoter,downstream
28	LOC_Os07g23780	hypothetical protein	gene	hypothetical protein	chr7	13432310	13432696	-	promoter
28	LOC_Os06g32250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18778321	18778716	-	promoter
28	LOC_Os01g09530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	4862878	4866115	-	promoter
28	LOC_Os07g15800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	9171156	9176187	+	promoter
28	LOC_Os11g34690	expressed protein	gene	expressed protein	chr11	19855255	19860346	+	promoter
28	LOC_Os05g30940	vacuolar calcium binding protein, putative, expressed	gene	vacuolar calcium binding protein, putative, expressed	chr5	17901520	17903838	-	promoter
28	LOC_Os09g16890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10315321	10317927	+	promoter
28	LOC_Os11g27600	keratin, type I cytoskeletal 50 kDa, putative	gene	keratin, type I cytoskeletal 50 kDa, putative	chr11	15425963	15426532	-	promoter
28	LOC_Os02g08290	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	4403220	4406550	-	promoter,downstream
28	LOC_Os04g24030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	13721370	13721819	-	promoter
28	LOC_Os06g12490	hypothetical protein	gene	hypothetical protein	chr6	6781327	6782881	-	promoter
28	LOC_Os12g10450	hypothetical protein	gene	hypothetical protein	chr12	5537961	5538999	+	promoter
28	LOC_Os03g02130	hypothetical protein	gene	hypothetical protein	chr3	687568	688877	-	promoter,downstream
28	LOC_Os03g14420	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr3	7839745	7842112	-	promoter
28	LOC_Os07g46260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27600677	27608004	-	promoter
28	LOC_Os12g17790	hypothetical protein	gene	hypothetical protein	chr12	10180689	10182436	-	promoter
28	LOC_Os11g11570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6430808	6431062	-	promoter,downstream
28	LOC_Os03g38200	hypothetical protein	gene	hypothetical protein	chr3	21209562	21210359	-	promoter
28	LOC_Os12g12210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6702547	6705879	-	promoter
28	LOC_Os11g20689	exosome complex exonuclease, putative, expressed	gene	exosome complex exonuclease, putative, expressed	chr11	11974790	11982371	+	promoter
28	LOC_Os11g25680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14186331	14187134	-	promoter,downstream
28	LOC_Os10g08710	chalcone synthase, putative	gene	chalcone synthase, putative	chr10	4741908	4742825	+	promoter
28	LOC_Os02g17460	tesmin/TSO1-like CXC domain containing protein, expressed	gene	tesmin/TSO1-like CXC domain containing protein, expressed	chr2	10042476	10049189	-	promoter
28	LOC_Os05g04229	unknown	gene	unknown	chr5	1928939	1929290	-	promoter
28	LOC_Os12g33956	maturase, putative, expressed	gene	maturase, putative, expressed	chr12	20469289	20471302	+	promoter
28	LOC_Os06g32440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18866123	18866659	-	promoter
28	LOC_Os02g22750	hypothetical protein	gene	hypothetical protein	chr2	13544713	13545168	+	promoter,downstream
28	LOC_Os04g48930	ferric-chelate reductase, putative, expressed	gene	ferric-chelate reductase, putative, expressed	chr4	28993724	28996525	-	promoter
28	LOC_Os07g26290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15112083	15117183	-	promoter,downstream
28	LOC_Os03g31800	hypothetical protein	gene	hypothetical protein	chr3	18187560	18190700	-	promoter
28	LOC_Os11g17790	inhibitor I family protein, putative	gene	inhibitor I family protein, putative	chr11	9951601	9951804	+	promoter
28	LOC_Os10g09900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	5378466	5381743	-	promoter
28	LOC_Os05g19810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11545526	11546875	+	promoter,downstream
28	LOC_Os04g13500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7523454	7524400	-	promoter,downstream
28	LOC_Os06g29130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16620600	16623913	+	promoter,downstream
28	LOC_Os04g10500	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	5701467	5702836	-	promoter
28	LOC_Os08g35510	cytochrome P450, putative	gene	cytochrome P450, putative	chr8	22366664	22368226	-	promoter
28	LOC_Os07g37500	hypothetical protein	gene	hypothetical protein	chr7	22453139	22453507	+	promoter
28	LOC_Os06g03260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1243910	1245304	+	promoter
28	LOC_Os06g20680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11911154	11911984	-	promoter,downstream
28	LOC_Os12g42760	type IIB DNA topoisomerase, putative, expressed	gene	type IIB DNA topoisomerase, putative, expressed	chr12	26544351	26547435	+	promoter
28	LOC_Os06g49580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	30018079	30021366	-	promoter,downstream
28	LOC_Os04g07450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3952415	3953002	-	promoter
28	LOC_Os04g14460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8090436	8091797	-	promoter,downstream
28	LOC_Os12g27560	hypothetical protein	gene	hypothetical protein	chr12	16221636	16222109	-	promoter,downstream
28	LOC_Os12g14850	hypothetical protein	gene	hypothetical protein	chr12	8504109	8504357	-	promoter
28	LOC_Os08g29250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	17929283	17935949	-	promoter,downstream
28	LOC_Os04g38140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22513655	22515948	-	promoter,downstream
28	LOC_Os07g16310	hypothetical protein	gene	hypothetical protein	chr7	9519136	9520138	+	promoter
28	LOC_Os11g47260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27898451	27900760	+	promoter
28	LOC_Os12g04680	hypothetical protein	gene	hypothetical protein	chr12	1982960	1983384	+	promoter
28	LOC_Os12g18410	expressed protein	gene	expressed protein	chr12	10649374	10650863	+	promoter
28	LOC_Os04g30910	SAM domain family protein, expressed	gene	SAM domain family protein, expressed	chr4	18296273	18301860	+	promoter
28	LOC_Os10g02530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	958340	958933	-	promoter,downstream
28	LOC_Os12g17170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9828840	9831463	+	promoter,downstream
28	LOC_Os12g31320	photoreceptor-interacting protein-like, putative	gene	photoreceptor-interacting protein-like, putative	chr12	18816273	18817103	+	promoter
28	LOC_Os02g02424	ZOS2-02 - C2H2 zinc finger protein, expressed	gene	ZOS2-02 - C2H2 zinc finger protein, expressed	chr2	853767	859880	-	promoter
28	LOC_Os04g07360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3910372	3911805	+	promoter,downstream
28	LOC_Os01g23370	hypothetical protein	gene	hypothetical protein	chr1	13136822	13140038	+	promoter
28	LOC_Os01g50650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29090227	29093718	-	promoter,downstream
28	LOC_Os05g00996	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14860	18906	-	promoter
28	LOC_Os01g50550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29030448	29032368	-	promoter
28	LOC_Os01g70040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	40520157	40523402	-	promoter,downstream
28	LOC_Os03g25210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	14407442	14410774	-	promoter
28	LOC_Os08g14870	hypothetical protein	gene	hypothetical protein	chr8	8962797	8963132	+	promoter
28	LOC_Os11g32859	hypothetical protein	gene	hypothetical protein	chr11	18946131	18946829	+	promoter
28	LOC_Os09g04670	DAG protein, chloroplast precursor, putative, expressed	gene	DAG protein, chloroplast precursor, putative, expressed	chr9	2488758	2492538	-	promoter
28	LOC_Os11g32570	hypothetical protein	gene	hypothetical protein	chr11	18751603	18753237	-	promoter
28	LOC_Os10g18980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	9591967	9593585	-	promoter,downstream
28	LOC_Os01g25670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14550081	14551284	-	promoter,downstream
28	LOC_Os05g20150	TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed	gene	TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed	chr5	11788627	11791799	-	promoter,downstream
28	LOC_Os02g51970	phosphate-induced protein 1 conserved region domain containing protein, expressed	gene	phosphate-induced protein 1 conserved region domain containing protein, expressed	chr2	31817956	31819395	-	promoter,downstream
28	LOC_Os03g44230	transmembrane amino acid transporter protein, putative, expressed	gene	transmembrane amino acid transporter protein, putative, expressed	chr3	24848251	24852456	-	promoter
28	LOC_Os07g14210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8097556	8100054	+	promoter
28	LOC_Os09g01060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	83878	90623	+	promoter,downstream
28	LOC_Os04g57470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	34009762	34010520	-	promoter,downstream
28	LOC_Os10g01400	hypothetical protein	gene	hypothetical protein	chr10	242538	243559	+	promoter,downstream
28	LOC_Os08g10880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6410880	6412167	-	promoter,downstream
28	LOC_Os01g54650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	31439328	31442583	+	promoter,downstream
28	LOC_Os03g63640	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35927882	35931118	-	promoter
28	LOC_Os03g38970	metal ion binding protein, putative, expressed	gene	metal ion binding protein, putative, expressed	chr3	21645910	21658739	-	promoter
28	LOC_Os01g32110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17575317	17578412	-	promoter
28	LOC_Os11g27470	hypothetical protein	gene	hypothetical protein	chr11	15348172	15348908	-	promoter,downstream
28	LOC_Os06g31860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18512037	18512675	+	promoter,downstream
28	LOC_Os01g06170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2940328	2943378	+	promoter
28	LOC_Os01g63600	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	36874584	36875956	-	promoter
28	LOC_Os01g13300	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr1	7416303	7421624	+	promoter
28	LOC_Os03g32380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18518174	18522677	+	promoter,downstream
28	LOC_Os11g34340	hypothetical protein	gene	hypothetical protein	chr11	19662001	19662390	-	promoter
28	LOC_Os11g45350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26963557	26965418	+	promoter
28	LOC_Os05g50540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28917576	28918814	-	promoter
28	LOC_Os02g29700	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	17666664	17667092	-	promoter
28	LOC_Os07g23610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	13346451	13347839	+	promoter,downstream
28	LOC_Os07g12140	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr7	6789691	6795636	+	promoter
28	LOC_Os04g40180	expressed protein	gene	expressed protein	chr4	23727743	23730074	+	promoter
28	LOC_Os04g14540	expressed protein	gene	expressed protein	chr4	8131397	8133694	-	promoter
28	LOC_Os08g20379	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12242822	12243274	-	promoter
28	LOC_Os12g21690	hypothetical protein	gene	hypothetical protein	chr12	12186666	12186929	+	promoter
28	LOC_Os01g51360	lipase, putative, expressed	gene	lipase, putative, expressed	chr1	29528681	29531802	-	promoter
28	LOC_Os11g32320	CCB1, putative, expressed	gene	CCB1, putative, expressed	chr11	18626553	18629016	+	promoter
28	LOC_Os04g32000	expressed protein	gene	expressed protein	chr4	18986640	18989832	+	promoter
28	LOC_Os04g27190	terpene synthase, putative, expressed	gene	terpene synthase, putative, expressed	chr4	15885960	15896289	-	promoter
28	LOC_Os10g03990	cysteine-rich receptor-like protein kinase 2 precursor, putative	gene	cysteine-rich receptor-like protein kinase 2 precursor, putative	chr10	1817140	1819532	+	promoter
28	LOC_Os11g30980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17556207	17556653	-	promoter
28	LOC_Os12g43220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	26788128	26795471	-	promoter,downstream
28	LOC_Os01g15200	hypothetical protein	gene	hypothetical protein	chr1	8519987	8520554	-	promoter
28	LOC_Os06g45220	hypothetical protein	gene	hypothetical protein	chr6	27330981	27331851	+	promoter
28	LOC_Os04g18620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10286732	10289936	-	promoter
28	LOC_Os12g34092	ribosomal protein S2, putative, expressed	gene	ribosomal protein S2, putative, expressed	chr12	20570316	20572136	-	promoter
28	LOC_Os03g35360	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	19611440	19611919	+	promoter
28	LOC_Os05g27260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15792308	15794109	-	promoter,downstream
28	LOC_Os11g42720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25266163	25270842	+	promoter
28	LOC_Os12g25470	hypothetical protein	gene	hypothetical protein	chr12	14732149	14732421	+	promoter,downstream
28	LOC_Os01g36040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19938189	19944931	-	promoter,downstream
28	LOC_Os09g09770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5289339	5295740	-	promoter,downstream
28	LOC_Os05g27860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16185141	16188361	+	promoter
28	LOC_Os03g36360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20157956	20158954	-	promoter,downstream
28	LOC_Os03g20060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	11300916	11303518	-	promoter,downstream
28	LOC_Os11g14620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8232280	8233204	+	promoter
28	LOC_Os05g17130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9800877	9804441	-	promoter,downstream
28	LOC_Os04g11250	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	6144061	6144744	-	promoter,downstream
28	LOC_Os10g01910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	575157	580120	-	promoter
28	LOC_Os01g63140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	36584255	36585118	-	promoter
28	LOC_Os06g22200	hypothetical protein	gene	hypothetical protein	chr6	12880637	12881450	+	promoter
28	LOC_Os01g73344	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	42509969	42516136	+	promoter
28	LOC_Os03g17830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	9928407	9928928	+	promoter
28	LOC_Os11g12150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	6767196	6767465	+	promoter
28	LOC_Os11g24570	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr11	13563874	13566220	+	promoter
28	LOC_Os06g38430	expressed protein	gene	expressed protein	chr6	22765869	22766605	+	promoter
28	LOC_Os01g14730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8237804	8238716	+	promoter,downstream
28	LOC_Os11g25080	hypothetical protein	gene	hypothetical protein	chr11	13836165	13836572	-	promoter
28	LOC_Os10g15010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7873599	7875900	-	promoter,downstream
28	LOC_Os12g13860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7845627	7847126	-	promoter
28	LOC_Os03g14669	core histone H2A/H2B/H3/H4, putative, expressed	gene	core histone H2A/H2B/H3/H4, putative, expressed	chr3	7975783	7978322	-	promoter
28	LOC_Os05g20070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11737630	11738014	+	promoter,downstream
28	LOC_Os04g55830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33054101	33057364	-	promoter
28	LOC_Os05g48360	membrane attack complex component/perforin/complement C9, putative, expressed	gene	membrane attack complex component/perforin/complement C9, putative, expressed	chr5	27660759	27664836	-	promoter
28	LOC_Os01g33480	hypothetical protein	gene	hypothetical protein	chr1	18434665	18435069	+	promoter
28	LOC_Os12g18060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10379761	10383558	-	promoter
28	LOC_Os12g42950	hypothetical protein	gene	hypothetical protein	chr12	26651130	26652215	+	promoter
28	LOC_Os04g11470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6271686	6273893	+	promoter
28	LOC_Os01g60140	ATCHX15, putative, expressed	gene	ATCHX15, putative, expressed	chr1	34787358	34790577	+	promoter
28	LOC_Os06g23620	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	13774353	13774954	+	promoter,downstream
28	LOC_Os06g50270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	30427226	30433336	-	promoter,downstream
28	LOC_Os12g06090	hypothetical protein	gene	hypothetical protein	chr12	2844232	2844941	-	promoter
28	LOC_Os05g19300	expressed protein	gene	expressed protein	chr5	11219540	11220029	+	promoter,downstream
28	LOC_Os05g18890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	10966920	10967297	+	promoter,downstream
28	LOC_Os02g24060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13933244	13934839	-	promoter,downstream
28	LOC_Os04g29130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17110871	17111311	-	promoter
28	LOC_Os07g30900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18288833	18290748	-	promoter,downstream
28	LOC_Os10g16910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8379823	8386490	+	promoter,downstream
28	LOC_Os06g50020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	30288322	30291653	-	promoter
28	LOC_Os12g33580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20254499	20256146	+	promoter,downstream
28	LOC_Os11g29014	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16326852	16331739	-	promoter
28	LOC_Os01g38410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21584147	21586100	+	promoter,downstream
28	LOC_Os08g27890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16998481	17000203	+	promoter,downstream
28	LOC_Os04g16030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8692830	8695092	+	promoter,downstream
28	LOC_Os12g27900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16443671	16444525	-	promoter
28	LOC_Os05g25590	hypothetical protein	gene	hypothetical protein	chr5	14816452	14817096	+	promoter
28	LOC_Os02g58440	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	gene	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	chr2	35733113	35737451	+	promoter
28	LOC_Os04g10090	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	5441735	5442181	-	promoter,downstream
28	LOC_Os03g29140	hypothetical protein	gene	hypothetical protein	chr3	16547013	16548666	+	promoter
28	LOC_Os11g43130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25550587	25552326	-	promoter,downstream
28	LOC_Os10g10149	expressed protein	gene	expressed protein	chr10	5585362	5586462	-	promoter
28	LOC_Os05g20370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11940640	11943461	-	promoter,downstream
28	LOC_Os11g34060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	19444439	19446077	+	promoter
28	LOC_Os04g16900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9239757	9240011	+	promoter
28	LOC_Os05g15590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8836297	8837130	-	promoter
28	LOC_Os03g46910	pyruvate kinase, putative, expressed	gene	pyruvate kinase, putative, expressed	chr3	26519674	26523770	-	promoter
28	LOC_Os03g30980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17642807	17646475	+	promoter
28	LOC_Os02g29774	expressed protein	gene	expressed protein	chr2	17712707	17714570	-	promoter
28	LOC_Os10g20040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9983910	9988987	-	promoter
28	LOC_Os10g11280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6274253	6278557	-	promoter
28	LOC_Os10g23884	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12180766	12183853	-	promoter
28	LOC_Os04g08815	hypothetical protein	gene	hypothetical protein	chr4	4836676	4836945	-	promoter
28	LOC_Os09g19590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11716007	11717189	+	promoter,downstream
28	LOC_Os11g04450	hypothetical protein	gene	hypothetical protein	chr11	1856166	1856636	-	promoter
28	LOC_Os07g24190	CESA3 - cellulose synthase, expressed	gene	CESA3 - cellulose synthase, expressed	chr7	13740291	13746263	-	promoter
28	LOC_Os12g18980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11013110	11013619	+	promoter,downstream
28	LOC_Os12g23440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13251441	13258028	-	promoter,downstream
28	LOC_Os03g41770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	23191013	23196915	-	promoter,downstream
28	LOC_Os08g11690	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	6848515	6849165	-	promoter
28	LOC_Os10g16720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8258599	8264115	-	promoter,downstream
28	LOC_Os09g14290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8447275	8447928	-	promoter,downstream
28	LOC_Os11g28580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16014428	16017043	-	promoter,downstream
28	LOC_Os09g06300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2948261	2949567	+	promoter,downstream
28	LOC_Os04g18060	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	9963014	9963448	-	promoter
28	LOC_Os09g02050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	744561	747433	-	promoter
28	LOC_Os02g33770	homeodomain, putative, expressed	gene	homeodomain, putative, expressed	chr2	20141998	20144142	+	promoter
28	LOC_Os05g43940	O-methyltransferase, putative, expressed	gene	O-methyltransferase, putative, expressed	chr5	25506508	25508308	-	promoter
28	LOC_Os12g16020	hypothetical protein	gene	hypothetical protein	chr12	9125043	9125719	+	promoter,downstream
28	LOC_Os04g07630	hypothetical protein	gene	hypothetical protein	chr4	4052935	4053141	+	promoter,downstream
28	LOC_Os06g17680	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	10263030	10266061	-	promoter
28	LOC_Os04g01130	chromatin modification-related protein EAF3, putative, expressed	gene	chromatin modification-related protein EAF3, putative, expressed	chr4	88024	96924	+	promoter
28	LOC_Os09g40060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22995378	22998985	-	promoter
28	LOC_Os11g37640	ADP-ribosylation factor, putative, expressed	gene	ADP-ribosylation factor, putative, expressed	chr11	21749662	21752992	+	promoter
28	LOC_Os07g16660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9779661	9782064	+	promoter
28	LOC_Os02g15330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8571791	8575489	+	promoter
28	LOC_Os05g15470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8739311	8746031	-	promoter,downstream
28	LOC_Os11g27060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15117771	15120488	+	promoter
28	LOC_Os05g24440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14056476	14057517	-	promoter,downstream
28	LOC_Os01g09400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	4785478	4786242	+	promoter
28	LOC_Os05g23590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13466324	13470904	-	promoter
28	LOC_Os05g18400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10637657	10638673	-	promoter,downstream
28	LOC_Os09g31350	expressed protein	gene	expressed protein	chr9	18844066	18847443	+	promoter
28	LOC_Os04g10100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5445727	5452452	-	promoter,downstream
28	LOC_Os05g04870	oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed	gene	oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed	chr5	2345363	2346818	-	promoter
28	LOC_Os04g43610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25618221	25621752	-	promoter
28	LOC_Os04g29790	OsWAK40 - OsWAK receptor-like  protein OsWAK-RLP	gene	OsWAK40 - OsWAK receptor-like  protein OsWAK-RLP	chr4	17580278	17584546	-	promoter
28	LOC_Os01g31300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17120024	17122046	+	promoter
28	LOC_Os11g13740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	7556618	7562370	-	promoter
28	LOC_Os07g27540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16093117	16094889	+	promoter
28	LOC_Os05g08250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4501011	4503593	+	promoter,downstream
28	LOC_Os01g27980	hypothetical protein	gene	hypothetical protein	chr1	15639292	15639612	-	promoter,downstream
28	LOC_Os04g11160	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	6061999	6064778	+	promoter
28	LOC_Os11g23780	hypothetical protein	gene	hypothetical protein	chr11	12987194	12988811	-	promoter,downstream
28	LOC_Os03g33864	unknown	gene	unknown	chr3	19342835	19343385	-	promoter,downstream
28	LOC_Os12g32810	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	19797561	19798097	-	promoter
28	LOC_Os05g42950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	24874004	24877312	+	promoter
28	LOC_Os01g34010	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	18718900	18722058	+	promoter
28	LOC_Os01g32950	hypothetical protein	gene	hypothetical protein	chr1	18079977	18080246	-	promoter,downstream
28	LOC_Os09g01160	hypothetical protein	gene	hypothetical protein	chr9	161992	162195	+	promoter
28	LOC_Os10g18360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9252013	9256757	-	promoter,downstream
28	LOC_Os04g35790	GLTP domain containing protein, putative, expressed	gene	GLTP domain containing protein, putative, expressed	chr4	21640207	21644228	-	promoter
28	LOC_Os01g38830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	21778177	21779946	-	promoter
28	LOC_Os01g25780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	14606482	14608006	+	promoter
28	LOC_Os11g22060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12215138	12215563	-	promoter,downstream
28	LOC_Os06g33310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19388314	19388892	-	promoter
28	LOC_Os11g01109	hypothetical protein	gene	hypothetical protein	chr11	52703	54852	-	promoter
28	LOC_Os09g16700	legume lectins beta domain containing protein, putative	gene	legume lectins beta domain containing protein, putative	chr9	10221168	10221830	-	promoter
28	LOC_Os01g09820	unknown	gene	unknown	chr1	5078127	5079367	-	promoter
28	LOC_Os08g25530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15526640	15528073	-	promoter,downstream
28	LOC_Os09g11120	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	6164470	6165262	-	promoter
28	LOC_Os10g16490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8154509	8155984	-	promoter
28	LOC_Os06g17830	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	gene	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	chr6	10340178	10342173	+	promoter
28	LOC_Os05g20420	hypothetical protein	gene	hypothetical protein	chr5	11976214	11977337	-	promoter,downstream
28	LOC_Os09g14280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8441207	8444152	-	promoter,downstream
28	LOC_Os05g05660	PWWP domain containing protein, expressed	gene	PWWP domain containing protein, expressed	chr5	2810593	2818555	+	promoter
28	LOC_Os12g11000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	5931229	5935080	-	promoter
28	LOC_Os06g16470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9456444	9457936	+	promoter
28	LOC_Os06g45190	pollen allergen, putative, expressed	gene	pollen allergen, putative, expressed	chr6	27322841	27323414	-	promoter,downstream
28	LOC_Os11g23970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13120277	13125785	-	promoter
28	LOC_Os10g01970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	606117	607880	-	promoter
28	LOC_Os11g20280	hypothetical protein	gene	hypothetical protein	chr11	11712936	11713298	+	promoter,downstream
28	LOC_Os03g39370	hypothetical protein	gene	hypothetical protein	chr3	21879280	21880131	-	promoter
28	LOC_Os05g02100	hypothetical protein	gene	hypothetical protein	chr5	626733	627684	-	promoter
28	LOC_Os12g33270	hypothetical protein	gene	hypothetical protein	chr12	20096706	20099748	-	promoter,downstream
28	LOC_Os03g61370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34824132	34825247	+	promoter,downstream
28	LOC_Os05g17500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10050452	10051732	+	promoter
28	LOC_Os06g35290	hypothetical protein	gene	hypothetical protein	chr6	20577773	20578270	+	promoter,downstream
28	LOC_Os11g27860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15568807	15569009	+	promoter,downstream
28	LOC_Os01g39940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	22524338	22528259	+	promoter
28	LOC_Os02g31280	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	18740846	18741956	+	promoter
28	LOC_Os08g24570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	14849054	14855727	+	promoter,downstream
28	LOC_Os04g48570	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	28763659	28764195	+	promoter,downstream
28	LOC_Os03g33420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19098509	19100860	+	promoter,downstream
28	LOC_Os02g44390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26883317	26886618	+	promoter,downstream
28	LOC_Os04g16590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9015347	9019150	+	promoter
28	LOC_Os01g37930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21245864	21249169	+	promoter
28	LOC_Os04g22844	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12934338	12936800	+	promoter,downstream
28	LOC_Os02g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13539575	13540274	-	promoter
28	LOC_Os04g10380	glycine-rich protein, putative, expressed	gene	glycine-rich protein, putative, expressed	chr4	5604181	5625718	+	promoter
28	LOC_Os08g23180	fasciclin-like arabinogalactan protein 8 precursor, putative, expressed	gene	fasciclin-like arabinogalactan protein 8 precursor, putative, expressed	chr8	13982326	13985506	-	promoter
28	LOC_Os09g11140	hypothetical protein	gene	hypothetical protein	chr9	6170119	6173633	-	promoter
28	LOC_Os10g11940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6638085	6638519	+	promoter,downstream
28	LOC_Os10g10700	invertase/pectin methylesterase inhibitor family protein, putative, expressed	gene	invertase/pectin methylesterase inhibitor family protein, putative, expressed	chr10	5922464	5925109	+	promoter
28	LOC_Os12g36020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22012783	22014060	-	promoter
28	LOC_Os02g03170	inhibitor I family protein, putative	gene	inhibitor I family protein, putative	chr2	1258361	1258591	+	promoter
28	LOC_Os12g08600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4372468	4373852	-	promoter,downstream
28	LOC_Os07g34470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	20664046	20664639	+	promoter
28	LOC_Os03g33340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19066999	19071114	+	promoter,downstream
28	LOC_Os08g26620	hypothetical protein	gene	hypothetical protein	chr8	16187970	16190847	-	promoter
28	LOC_Os10g12670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7075627	7082297	+	promoter,downstream
28	LOC_Os02g20510	hypothetical protein	gene	hypothetical protein	chr2	12100867	12101382	+	promoter
28	LOC_Os06g03400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1298185	1299108	+	promoter,downstream
28	LOC_Os03g04870	expressed protein	gene	expressed protein	chr3	2327864	2330600	+	promoter
28	LOC_Os01g44950	AMP-binding enzyme, putative	gene	AMP-binding enzyme, putative	chr1	25498055	25499923	-	promoter
28	LOC_Os04g54790	 ELMO/CED-12 family protein, putative, expressed	gene	 ELMO/CED-12 family protein, putative, expressed	chr4	32389296	32396575	+	promoter
28	LOC_Os04g21240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11965989	11966977	-	promoter,downstream
28	LOC_Os01g56350	PTAC12, putative, expressed	gene	PTAC12, putative, expressed	chr1	32469230	32475595	+	promoter
28	LOC_Os07g17760	hypothetical protein	gene	hypothetical protein	chr7	10489844	10491550	-	promoter,downstream
28	LOC_Os09g06440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3030241	3031286	-	promoter,downstream
28	LOC_Os10g10290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5671180	5673163	-	promoter
28	LOC_Os03g26570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15177519	15181741	+	promoter,downstream
28	LOC_Os05g42970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	24886230	24889930	+	promoter
28	LOC_Os09g15740	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	9618674	9619153	+	promoter
28	LOC_Os05g15100	hypothetical protein	gene	hypothetical protein	chr5	8570679	8572030	-	promoter
28	LOC_Os09g14430	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8523346	8530953	+	promoter,downstream
28	LOC_Os04g51230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30165855	30172010	-	promoter
28	LOC_Os07g15450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8949367	8949996	-	promoter,downstream
28	LOC_Os09g24650	zinc finger, C3HC4 type, putative, expressed	gene	zinc finger, C3HC4 type, putative, expressed	chr9	14670542	14675772	+	promoter
28	LOC_Os07g17610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10395418	10401789	+	promoter
28	LOC_Os02g58250	expressed protein	gene	expressed protein	chr2	35650923	35654667	+	promoter
28	LOC_Os03g55870	membrane associated DUF588 domain containing protein, putative, expressed	gene	membrane associated DUF588 domain containing protein, putative, expressed	chr3	31795187	31797060	+	promoter
28	LOC_Os09g33760	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	19938391	19938945	+	promoter
28	LOC_Os01g34830	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	19228442	19231875	-	promoter,downstream
28	LOC_Os12g16510	hypothetical protein	gene	hypothetical protein	chr12	9451263	9454464	+	promoter
28	LOC_Os11g29970	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr11	16945849	16951335	-	promoter
28	LOC_Os10g09970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5421604	5426606	-	promoter,downstream
28	LOC_Os01g09220	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	4645427	4647260	+	promoter
28	LOC_Os07g17590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10386213	10388698	-	promoter,downstream
28	LOC_Os11g10400	OsFBX419 - F-box domain containing protein, expressed	gene	OsFBX419 - F-box domain containing protein, expressed	chr11	5641353	5644168	-	promoter
28	LOC_Os07g13870	OsFBX229 - F-box domain containing protein, expressed	gene	OsFBX229 - F-box domain containing protein, expressed	chr7	7937939	7940321	-	promoter
28	LOC_Os12g22230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12526504	12529236	+	promoter
28	LOC_Os05g44680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25918487	25919470	-	promoter,downstream
28	LOC_Os11g23242	hypothetical protein	gene	hypothetical protein	chr11	12940573	12940818	+	promoter,downstream
28	LOC_Os10g32640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	17023952	17027284	-	promoter,downstream
28	LOC_Os09g01440	hypothetical protein	gene	hypothetical protein	chr9	330845	331108	+	promoter,downstream
28	LOC_Os08g06570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3707052	3713192	+	promoter
28	LOC_Os02g54120	CCR4-NOT transcription factor, putative, expressed	gene	CCR4-NOT transcription factor, putative, expressed	chr2	33153352	33163156	-	promoter
28	LOC_Os03g11830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	6188158	6192607	-	promoter
28	LOC_Os02g28370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16760018	16762117	-	promoter,downstream
28	LOC_Os06g30110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17356449	17361786	-	promoter,downstream
28	LOC_Os02g33450	peroxiredoxin, putative, expressed	gene	peroxiredoxin, putative, expressed	chr2	19876184	19880477	+	promoter
28	LOC_Os11g19280	hypothetical protein	gene	hypothetical protein	chr11	11042289	11043202	+	promoter
28	LOC_Os12g30270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18131812	18134586	+	promoter,downstream
28	LOC_Os10g24740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12659226	12659882	+	promoter
28	LOC_Os01g17980	hypothetical protein	gene	hypothetical protein	chr1	10057607	10058873	-	promoter
28	LOC_Os12g14410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8212460	8213221	-	promoter,downstream
28	LOC_Os08g38050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	24104809	24107916	-	promoter
28	LOC_Os10g01880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	566387	568796	+	promoter
28	LOC_Os08g06590	hypothetical protein	gene	hypothetical protein	chr8	3719261	3720338	+	promoter
28	LOC_Os06g41890	hypothetical protein	gene	hypothetical protein	chr6	25130761	25131535	+	promoter,downstream
28	LOC_Os04g24090	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr4	13751320	13751793	-	promoter,downstream
28	LOC_Os07g28730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16818137	16818496	+	promoter,downstream
28	LOC_Os04g02400	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	860590	860970	-	promoter
28	LOC_Os05g14460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8166873	8170573	+	promoter
28	LOC_Os06g27500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15567534	15569737	+	promoter,downstream
28	LOC_Os09g04600	hypothetical protein	gene	hypothetical protein	chr9	2449046	2449436	-	promoter,downstream
28	LOC_Os07g14950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8576909	8577930	+	promoter,downstream
28	LOC_Os02g16420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9361008	9365037	+	promoter,downstream
28	LOC_Os01g46554	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	26499949	26504974	+	promoter
28	LOC_Os04g12200	hypothetical protein	gene	hypothetical protein	chr4	6714003	6715559	-	promoter
28	LOC_Os07g16910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9943030	9949678	-	promoter,downstream
28	LOC_Os08g28360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17301821	17304116	+	promoter,downstream
28	LOC_Os01g38049	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21319197	21320306	+	promoter,downstream
28	LOC_Os04g22760	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	12887755	12888114	+	promoter
28	LOC_Os08g14530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8730969	8737712	+	promoter,downstream
28	LOC_Os03g43200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24090420	24091595	+	promoter,downstream
28	LOC_Os05g31100	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr5	18012786	18013124	-	promoter
28	LOC_Os07g21990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12297653	12300107	+	promoter
28	LOC_Os02g48950	ubiquitin-conjugating enzyme, putative	gene	ubiquitin-conjugating enzyme, putative	chr2	29925758	29928010	-	promoter
28	LOC_Os04g12780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7064214	7065446	-	promoter,downstream
28	LOC_Os02g29060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17207503	17208818	-	promoter
28	LOC_Os06g45760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27693865	27697529	-	promoter
28	LOC_Os03g43760	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr3	24474090	24479009	+	promoter
28	LOC_Os06g27920	zinc ion binding protein, putative	gene	zinc ion binding protein, putative	chr6	15847048	15848044	+	promoter,downstream
28	LOC_Os11g28890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16255322	16256515	-	promoter,downstream
28	LOC_Os08g29020	wall-associated kinase-like 2, putative, expressed	gene	wall-associated kinase-like 2, putative, expressed	chr8	17763295	17768197	+	promoter
28	LOC_Os07g10890	transcription factor, putative, expressed	gene	transcription factor, putative, expressed	chr7	5950436	5954715	+	promoter
28	LOC_Os04g12260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6768233	6770346	+	promoter
28	LOC_Os06g47010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28512372	28512962	-	promoter
28	LOC_Os03g05390	Citrate transporter protein, putative, expressed	gene	Citrate transporter protein, putative, expressed	chr3	2650925	2660783	-	promoter
28	LOC_Os01g28670	hypothetical protein	gene	hypothetical protein	chr1	16040156	16041203	+	promoter
28	LOC_Os12g10490	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	5557123	5558779	+	promoter,downstream
28	LOC_Os12g27150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15928891	15935542	+	promoter,downstream
28	LOC_Os06g12010	hypothetical protein	gene	hypothetical protein	chr6	6423295	6423809	+	promoter,downstream
28	LOC_Os04g54050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32023797	32028277	+	promoter,downstream
28	LOC_Os04g24570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14097107	14103366	+	promoter
28	LOC_Os05g08290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4521372	4528119	+	promoter,downstream
28	LOC_Os05g25750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14921108	14925680	-	promoter
28	LOC_Os10g12808	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7175373	7182044	+	promoter
28	LOC_Os04g11750	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	6433081	6435861	-	promoter
28	LOC_Os02g17560	hypothetical protein	gene	hypothetical protein	chr2	10105120	10105695	-	promoter,downstream
28	LOC_Os02g47700	hypothetical protein	gene	hypothetical protein	chr2	29161096	29163184	-	promoter
28	LOC_Os02g28700	hypothetical protein	gene	hypothetical protein	chr2	16965419	16965948	-	promoter
28	LOC_Os12g08420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4278154	4279899	-	promoter,downstream
28	LOC_Os01g57310	rp1, putative, expressed	gene	rp1, putative, expressed	chr1	33115073	33123327	+	promoter
28	LOC_Os08g22610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13603883	13604686	+	promoter
28	LOC_Os10g16890	hypothetical protein	gene	hypothetical protein	chr10	8351703	8352730	-	promoter
28	LOC_Os12g30214	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18104044	18110684	+	promoter,downstream
28	LOC_Os05g37630	hypothetical protein	gene	hypothetical protein	chr5	21960477	21961181	-	promoter
28	LOC_Os12g23690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13439872	13440552	+	promoter
28	LOC_Os05g04310	hypothetical protein	gene	hypothetical protein	chr5	1957339	1957656	+	promoter
28	LOC_Os02g25530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14908072	14908692	-	promoter,downstream
28	LOC_Os08g21280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12696346	12700137	-	promoter,downstream
28	LOC_Os09g22400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	13527868	13530733	+	promoter
28	LOC_Os12g30670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18392044	18394075	+	promoter,downstream
28	LOC_Os08g21654	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12900006	12900949	-	promoter,downstream
28	LOC_Os02g36150	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr2	21782264	21785354	+	promoter
28	LOC_Os11g27930	hypothetical protein	gene	hypothetical protein	chr11	15605300	15606753	-	promoter
28	LOC_Os12g13590	exocyst complex component 5, putative, expressed	gene	exocyst complex component 5, putative, expressed	chr12	7627628	7641698	-	promoter
28	LOC_Os09g01420	hypothetical protein	gene	hypothetical protein	chr9	322434	322856	-	promoter,downstream
28	LOC_Os06g03160	hypothetical protein	gene	hypothetical protein	chr6	1179022	1181416	+	promoter
28	LOC_Os10g17260	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr10	8608172	8610146	+	promoter,downstream
28	LOC_Os01g22980	OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed	chr1	12913922	12918184	-	promoter
28	LOC_Os09g06850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3283992	3284746	-	promoter,downstream
28	LOC_Os10g13630	expressed protein	gene	expressed protein	chr10	7401191	7410740	+	promoter
28	LOC_Os12g16160	CCT motif family protein	gene	CCT motif family protein	chr12	9227564	9228751	-	promoter
28	LOC_Os04g11270	hypothetical protein	gene	hypothetical protein	chr4	6154894	6155184	+	promoter
28	LOC_Os05g33180	hypothetical protein	gene	hypothetical protein	chr5	19393583	19394391	-	promoter,downstream
28	LOC_Os06g31360	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	18251625	18252062	-	promoter
28	LOC_Os05g24230	hypothetical protein	gene	hypothetical protein	chr5	13954919	13956788	-	promoter
28	LOC_Os09g38814	unknown	gene	unknown	chr9	22298687	22299046	-	promoter
28	LOC_Os03g20620	hypothetical protein	gene	hypothetical protein	chr3	11670314	11670774	+	promoter
28	LOC_Os06g01040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17804	25538	-	promoter,downstream
28	LOC_Os01g45020	F-box protein interaction domain containing protein, expressed	gene	F-box protein interaction domain containing protein, expressed	chr1	25540728	25547872	-	promoter
28	LOC_Os12g06600	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	3197665	3199653	-	promoter
28	LOC_Os10g06190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	3169313	3170630	+	promoter,downstream
28	LOC_Os12g23550	hypothetical protein	gene	hypothetical protein	chr12	13326014	13327403	-	promoter
28	LOC_Os03g37070	cytochrome P450 71E1, putative	gene	cytochrome P450 71E1, putative	chr3	20548989	20549423	+	promoter
28	LOC_Os04g57580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	34078991	34080522	-	promoter
28	LOC_Os12g09240	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr12	4835869	4840580	-	promoter
28	LOC_Os06g19900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11381885	11389124	-	promoter
28	LOC_Os12g19110	hypothetical protein	gene	hypothetical protein	chr12	11088851	11089153	-	promoter,downstream
28	LOC_Os10g05370	hypothetical protein	gene	hypothetical protein	chr10	2646469	2647722	-	promoter,downstream
28	LOC_Os01g22110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12410531	12413004	+	promoter
28	LOC_Os02g49820	RNA recognition motif family protein, expressed	gene	RNA recognition motif family protein, expressed	chr2	30439027	30442556	+	promoter
28	LOC_Os02g37050	phosphatidylinositolglycan class N family protein, expressed	gene	phosphatidylinositolglycan class N family protein, expressed	chr2	22375330	22384137	+	promoter
28	LOC_Os01g37210	expressed protein	gene	expressed protein	chr1	20782310	20785611	-	promoter
28	LOC_Os10g07602	hypothetical protein	gene	hypothetical protein	chr10	4206077	4207344	-	promoter
28	LOC_Os01g22309	hypothetical protein	gene	hypothetical protein	chr1	12540321	12540584	+	promoter
28	LOC_Os12g15030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8582757	8586247	-	promoter
28	LOC_Os10g08360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4549412	4550419	+	promoter
28	LOC_Os11g13620	expressed protein	gene	expressed protein	chr11	7456148	7457526	+	promoter
28	LOC_Os04g40170	hypothetical protein	gene	hypothetical protein	chr4	23726273	23726909	-	promoter
28	LOC_Os04g06480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3390423	3391631	+	promoter,downstream
28	LOC_Os12g14860	hypothetical protein	gene	hypothetical protein	chr12	8505266	8507303	+	promoter,downstream
28	LOC_Os07g40200	hypothetical protein	gene	hypothetical protein	chr7	24108462	24109744	+	promoter,downstream
28	LOC_Os12g15390	hypothetical protein	gene	hypothetical protein	chr12	8785203	8785537	+	promoter
28	LOC_Os02g30219	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	17968142	17968739	+	promoter
28	LOC_Os12g23500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13284818	13286316	-	promoter,downstream
28	LOC_Os01g50510	hypothetical protein	gene	hypothetical protein	chr1	29009909	29010229	+	promoter,downstream
28	LOC_Os05g24740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14283748	14285025	-	promoter
28	LOC_Os08g25510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15519267	15521188	+	promoter,downstream
28	LOC_Os01g20880	OsWAK3 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	gene	OsWAK3 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK	chr1	11654112	11658869	+	promoter
28	LOC_Os12g38520	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	23622833	23623363	-	promoter
28	LOC_Os08g40980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25922859	25926083	-	promoter
28	LOC_Os08g07540	hemimethylated DNA binding domain containing protein, expressed	gene	hemimethylated DNA binding domain containing protein, expressed	chr8	4236013	4241588	+	promoter
28	LOC_Os09g03220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1553844	1555485	+	promoter,downstream
28	LOC_Os02g21180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12562844	12563373	-	promoter,downstream
28	LOC_Os11g18610	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	10497064	10497306	+	promoter,downstream
28	LOC_Os01g02490	expressed protein	gene	expressed protein	chr1	803084	805932	-	promoter
28	LOC_Os09g04650	hypothetical protein	gene	hypothetical protein	chr9	2477779	2478042	-	promoter,downstream
28	LOC_Os07g24310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13823977	13830029	+	promoter
28	LOC_Os07g22250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12463487	12464143	+	promoter
28	LOC_Os02g24560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14225581	14228700	+	promoter,downstream
28	LOC_Os01g23410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13148261	13150587	-	promoter
28	LOC_Os12g19970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11623666	11625407	-	promoter,downstream
28	LOC_Os09g12830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7373109	7376673	+	promoter
28	LOC_Os06g37880	hypothetical protein	gene	hypothetical protein	chr6	22427345	22429292	+	promoter,downstream
28	LOC_Os10g10938	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	6067004	6067228	-	promoter,downstream
28	LOC_Os01g74220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	42992499	42995760	+	promoter
28	LOC_Os05g24250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13966285	13971868	-	promoter,downstream
28	LOC_Os05g27490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15927886	15933399	+	promoter
28	LOC_Os12g33900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20403315	20406201	-	promoter
28	LOC_Os11g42620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25190417	25197256	-	promoter
28	LOC_Os05g22820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12893396	12894181	-	promoter,downstream
28	LOC_Os01g15448	expressed protein	gene	expressed protein	chr1	8656064	8657466	+	promoter
28	LOC_Os07g45670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27267176	27269431	-	promoter
28	LOC_Os10g40250	expressed protein	gene	expressed protein	chr10	21486636	21491899	+	promoter
28	LOC_Os06g31050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18060105	18063587	-	promoter
28	LOC_Os12g22980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	12987275	12990034	+	promoter,downstream
28	LOC_Os06g24770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14548905	14550131	-	promoter,downstream
28	LOC_Os07g13440	RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative	gene	RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative	chr7	7707596	7707820	-	promoter
28	LOC_Os05g33720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	19801514	19802506	+	promoter,downstream
28	LOC_Os07g23710	cytochrome P450, putative	gene	cytochrome P450, putative	chr7	13381838	13383137	-	promoter
28	LOC_Os04g13430	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7468418	7470547	+	promoter
28	LOC_Os08g42660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26960272	26963413	-	promoter
28	LOC_Os08g26760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16270450	16271875	+	promoter
28	LOC_Os07g43560	TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed	gene	TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed	chr7	26051228	26055133	-	promoter
28	LOC_Os01g55670	expressed protein	gene	expressed protein	chr1	32069741	32071039	-	promoter
28	LOC_Os07g25020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14259924	14261639	+	promoter
28	LOC_Os06g03320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1265315	1268078	-	promoter
28	LOC_Os12g19720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11483743	11486535	+	promoter,downstream
28	LOC_Os01g60090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34751585	34753609	-	promoter
28	LOC_Os08g24540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14815752	14819645	+	promoter,downstream
28	LOC_Os02g14350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7874862	7875653	+	promoter
28	LOC_Os12g34140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20650665	20654319	-	promoter,downstream
28	LOC_Os02g16360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9313714	9317613	+	promoter,downstream
28	LOC_Os12g43490	thaumatin, putative, expressed	gene	thaumatin, putative, expressed	chr12	26946390	26947486	-	promoter
28	LOC_Os04g17230	hypothetical protein	gene	hypothetical protein	chr4	9434708	9435085	+	promoter
28	LOC_Os12g25840	mucin, putative	gene	mucin, putative	chr12	14985545	14987399	+	promoter,downstream
28	LOC_Os12g16420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	9402534	9403505	+	promoter
28	LOC_Os04g20670	hypothetical protein	gene	hypothetical protein	chr4	11556424	11557808	-	promoter
28	LOC_Os07g07560	CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed	gene	CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed	chr7	3772301	3778798	+	promoter
28	LOC_Os02g14780	splicing factor 3 subunit 1, putative, expressed	gene	splicing factor 3 subunit 1, putative, expressed	chr2	8196894	8200387	+	promoter
28	LOC_Os04g24850	cytokinin-O-glucosyltransferase 2, putative, expressed	gene	cytokinin-O-glucosyltransferase 2, putative, expressed	chr4	14302451	14304002	-	promoter
28	LOC_Os10g11710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6494499	6494987	+	promoter,downstream
28	LOC_Os10g01006	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	2710	4371	-	promoter,downstream
28	LOC_Os06g19960	aconitate hydratase protein, putative	gene	aconitate hydratase protein, putative	chr6	11438153	11446644	+	promoter
28	LOC_Os09g30482	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	18601643	18603341	+	promoter,downstream
28	LOC_Os03g29540	ATP-dependent protease, putative, expressed	gene	ATP-dependent protease, putative, expressed	chr3	16835496	16839628	-	promoter
28	LOC_Os11g27100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15130683	15132832	+	promoter,downstream
28	LOC_Os01g74380	hypothetical protein	gene	hypothetical protein	chr1	43080953	43081989	-	promoter
28	LOC_Os04g05300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2633729	2636911	+	promoter,downstream
28	LOC_Os04g51860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	30565638	30567031	+	promoter
28	LOC_Os10g06650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	3451611	3451994	+	promoter,downstream
28	LOC_Os06g49940	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	30233849	30235216	-	promoter
28	LOC_Os02g24640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14286558	14287907	-	promoter,downstream
28	LOC_Os09g38590	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	22199384	22200076	+	promoter
28	LOC_Os09g16800	hypothetical protein	gene	hypothetical protein	chr9	10269182	10269600	-	promoter
28	LOC_Os01g60720	hypothetical protein	gene	hypothetical protein	chr1	35117827	35118957	-	promoter
28	LOC_Os10g30832	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	15986862	15987914	-	promoter
28	LOC_Os07g18380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10889204	10890666	+	promoter,downstream
28	LOC_Os12g05740	expressed protein	gene	expressed protein	chr12	2646702	2649299	+	promoter
28	LOC_Os11g41440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24398705	24399193	-	promoter,downstream
28	LOC_Os09g10930	gamma response I protein, putative, expressed	gene	gamma response I protein, putative, expressed	chr9	6015388	6019410	+	promoter
28	LOC_Os09g06230	serine/threonine-protein kinase 16, putative, expressed	gene	serine/threonine-protein kinase 16, putative, expressed	chr9	2913717	2919231	-	promoter
28	LOC_Os03g21040	stress responsive protein, putative, expressed	gene	stress responsive protein, putative, expressed	chr3	11955979	11958495	-	promoter
28	LOC_Os04g04100	hypothetical protein	gene	hypothetical protein	chr4	1888957	1890501	+	promoter,downstream
28	LOC_Os12g18660	hypothetical protein	gene	hypothetical protein	chr12	10781674	10783543	+	promoter
28	LOC_Os12g33434	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20174510	20177561	-	promoter,downstream
28	LOC_Os05g05390	expressed protein	gene	expressed protein	chr5	2672348	2679510	-	promoter
28	LOC_Os07g10290	hypothetical protein	gene	hypothetical protein	chr7	5518554	5519342	-	promoter
28	LOC_Os06g23670	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr6	13812236	13816750	+	promoter,downstream
28	LOC_Os08g32030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	19863697	19866630	-	promoter
28	LOC_Os01g35630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	19715807	19716226	-	promoter,downstream
28	LOC_Os01g63120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	36575102	36579553	-	promoter,downstream
28	LOC_Os08g22830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13725958	13728005	+	promoter
28	LOC_Os07g13240	hypothetical protein	gene	hypothetical protein	chr7	7593881	7594694	+	promoter
28	LOC_Os04g05850	hypothetical protein	gene	hypothetical protein	chr4	3002117	3002746	+	promoter
28	LOC_Os05g28240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16480235	16481521	-	promoter,downstream
28	LOC_Os04g19310	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	10736148	10737956	+	promoter
28	LOC_Os09g03520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	1735906	1736316	-	promoter,downstream
28	LOC_Os12g22420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12657671	12658603	+	promoter,downstream
28	LOC_Os03g45700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25793731	25794087	-	promoter,downstream
28	LOC_Os01g74130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	42936122	42939107	-	promoter,downstream
28	LOC_Os11g27690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	15471859	15472368	-	promoter,downstream
28	LOC_Os02g16980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9691840	9696199	+	promoter,downstream
28	LOC_Os03g57390	hypothetical protein	gene	hypothetical protein	chr3	32724289	32724570	+	promoter
28	LOC_Os08g12570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7440010	7442244	-	promoter
28	LOC_Os10g09529	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5157985	5163981	-	promoter,downstream
28	LOC_Os08g19410	CBL-interacting protein kinase, putative	gene	CBL-interacting protein kinase, putative	chr8	11602238	11602646	+	promoter,downstream
28	LOC_Os11g21810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12057484	12058511	-	promoter,downstream
28	LOC_Os04g19560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10880286	10882188	+	promoter
28	LOC_Os09g01030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	66098	70631	+	promoter,downstream
28	LOC_Os09g14340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8470287	8474690	-	promoter,downstream
28	LOC_Os07g16850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9901083	9907833	+	promoter,downstream
28	LOC_Os06g29820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	17186524	17188320	+	promoter
28	LOC_Os05g17280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9901832	9902978	-	promoter,downstream
28	LOC_Os01g03210	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	1263356	1264273	+	promoter
28	LOC_Os04g10110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5456052	5457237	+	promoter,downstream
28	LOC_Os10g28910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14994408	14996428	+	promoter
28	LOC_Os11g05900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	2770311	2772910	+	promoter
28	LOC_Os05g27840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	16171963	16173554	+	promoter
28	LOC_Os01g25980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	14728038	14728610	+	promoter
28	LOC_Os03g37250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	20640679	20648159	-	promoter
28	LOC_Os09g01850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	583640	586576	-	promoter,downstream
28	LOC_Os07g15430	expressed protein	gene	expressed protein	chr7	8925128	8927970	+	promoter
28	LOC_Os04g15590	hypothetical protein	gene	hypothetical protein	chr4	8476779	8477904	-	promoter
28	LOC_Os02g18515	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	10787286	10789506	+	promoter,downstream
28	LOC_Os05g28930	integral membrane protein DUF6 containing protein	gene	integral membrane protein DUF6 containing protein	chr5	16894296	16900379	+	promoter,downstream
28	LOC_Os12g28990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17139656	17146398	-	promoter,downstream
28	LOC_Os06g33840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19685766	19687902	+	promoter
28	LOC_Os02g26910	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	15793602	15794198	-	promoter,downstream
28	LOC_Os07g18190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10779776	10786852	+	promoter,downstream
28	LOC_Os12g14160	hypothetical protein	gene	hypothetical protein	chr12	8036654	8037472	+	promoter
28	LOC_Os07g49510	expressed protein	gene	expressed protein	chr7	29652146	29655388	+	promoter
28	LOC_Os05g09310	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	5203035	5203334	-	promoter,downstream
28	LOC_Os11g42270	OsFBX432 - F-box domain containing protein, expressed	gene	OsFBX432 - F-box domain containing protein, expressed	chr11	24995083	24996837	-	promoter
28	LOC_Os05g20910	hypothetical protein	gene	hypothetical protein	chr5	12279340	12279633	-	promoter,downstream
28	LOC_Os12g06440	expressed protein	gene	expressed protein	chr12	3086039	3090664	-	promoter
28	LOC_Os11g05050	stem-specific protein TSJT1, putative, expressed	gene	stem-specific protein TSJT1, putative, expressed	chr11	2200367	2203424	-	promoter
28	LOC_Os05g30620	leucine zipper protein-like, putative	gene	leucine zipper protein-like, putative	chr5	17677665	17678159	+	promoter
28	LOC_Os11g23820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13018081	13021386	-	promoter,downstream
28	LOC_Os09g15940	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	9739076	9741224	+	promoter
28	LOC_Os12g21754	unknown	gene	unknown	chr12	12237762	12239966	+	promoter
28	LOC_Os02g42080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	25287085	25293222	+	promoter,downstream
28	LOC_Os09g24640	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr9	14665228	14666808	+	promoter,downstream
28	LOC_Os07g16680	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	9784900	9785672	-	promoter,downstream
28	LOC_Os05g52060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29821513	29830144	-	promoter
28	LOC_Os03g35490	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19674582	19675445	-	promoter,downstream
28	LOC_Os06g14020	hypothetical protein	gene	hypothetical protein	chr6	7794314	7795548	+	promoter,downstream
28	LOC_Os10g12700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7096211	7097819	-	promoter,downstream
28	LOC_Os02g21150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12552651	12554960	-	promoter,downstream
28	LOC_Os05g18250	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10502022	10502527	+	promoter,downstream
28	LOC_Os04g06388	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3333456	3334418	+	promoter,downstream
28	LOC_Os02g28360	hypothetical protein	gene	hypothetical protein	chr2	16756526	16756807	+	promoter,downstream
28	LOC_Os03g23230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13445669	13448390	-	promoter,downstream
28	LOC_Os01g56220	expressed protein	gene	expressed protein	chr1	32378716	32379545	-	promoter
28	LOC_Os09g03060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1446669	1447769	-	promoter,downstream
28	LOC_Os11g26930	hypothetical protein	gene	hypothetical protein	chr11	15022080	15023541	+	promoter
28	LOC_Os02g30950	hypothetical protein	gene	hypothetical protein	chr2	18484715	18485941	+	promoter
28	LOC_Os11g08810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	4669674	4672961	-	promoter
28	LOC_Os01g27970	hypothetical protein	gene	hypothetical protein	chr1	15636638	15636940	+	promoter,downstream
28	LOC_Os11g35530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20363020	20365433	+	promoter
28	LOC_Os04g25710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14898138	14899955	-	promoter
28	LOC_Os08g11390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6690539	6691075	+	promoter
28	LOC_Os01g27880	sucrose-phosphatase, putative, expressed	gene	sucrose-phosphatase, putative, expressed	chr1	15567750	15572351	-	promoter,downstream
28	LOC_Os12g21930	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr12	12346798	12350988	+	promoter
28	LOC_Os04g23530	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	13447671	13451414	+	promoter
28	LOC_Os02g54440	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	33345609	33347572	-	promoter
28	LOC_Os05g32710	Alpha amylase, catalytic domain containing protein, expressed	gene	Alpha amylase, catalytic domain containing protein, expressed	chr5	19092454	19095084	-	promoter
28	LOC_Os01g53779	expressed protein	gene	expressed protein	chr1	30908386	30915432	+	promoter
28	LOC_Os10g28320	oxidoreductase, aldo/keto reductase family protein, putative, expressed	gene	oxidoreductase, aldo/keto reductase family protein, putative, expressed	chr10	14660276	14665378	+	promoter
28	LOC_Os08g11970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7021157	7023461	+	promoter,downstream
28	LOC_Os02g22370	expressed protein	gene	expressed protein	chr2	13349857	13360648	+	promoter
28	LOC_Os05g14000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	7794200	7797900	+	promoter
28	LOC_Os01g18660	aminotransferase, putative, expressed	gene	aminotransferase, putative, expressed	chr1	10508008	10512376	+	promoter
28	LOC_Os03g20830	hypothetical protein	gene	hypothetical protein	chr3	11794437	11794973	+	promoter
28	LOC_Os10g32405	expressed protein	gene	expressed protein	chr10	16919000	16921011	-	promoter,downstream
28	LOC_Os04g06340	MEGL11 - Maternally expressed gene MEG family protein precursor	gene	MEGL11 - Maternally expressed gene MEG family protein precursor	chr4	3305938	3306434	-	promoter
28	LOC_Os09g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13475639	13481637	+	promoter
28	LOC_Os06g20700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11917230	11921281	-	promoter,downstream
28	LOC_Os08g23030	hypothetical protein	gene	hypothetical protein	chr8	13866201	13866443	-	promoter,downstream
28	LOC_Os05g30130	chaperone protein dnaJ 49, putative, expressed	gene	chaperone protein dnaJ 49, putative, expressed	chr5	17381202	17385570	-	promoter
28	LOC_Os09g17140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10506254	10507537	-	promoter,downstream
28	LOC_Os12g39930	hypothetical protein	gene	hypothetical protein	chr12	24648104	24648630	-	promoter
28	LOC_Os11g43280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25638811	25639989	-	promoter
28	LOC_Os06g24560	hypothetical protein	gene	hypothetical protein	chr6	14397933	14398253	-	promoter,downstream
28	LOC_Os05g37750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22037326	22038981	-	promoter,downstream
28	LOC_Os11g01280	expressed protein	gene	expressed protein	chr11	151112	154483	+	promoter
28	LOC_Os05g50040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	28623276	28626188	+	promoter,downstream
28	LOC_Os09g01530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	378642	384737	+	promoter,downstream
28	LOC_Os06g22640	expressed protein	gene	expressed protein	chr6	13160182	13160418	-	promoter
28	LOC_Os07g16710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9798455	9799348	+	promoter
28	LOC_Os04g02375	hypothetical protein	gene	hypothetical protein	chr4	853785	854691	+	promoter
28	LOC_Os05g14840	hypothetical protein	gene	hypothetical protein	chr5	8434016	8435241	+	promoter
28	LOC_Os06g25510	hypothetical protein	gene	hypothetical protein	chr6	14917278	14917625	+	promoter,downstream
28	LOC_Os07g18290	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	10836675	10838455	+	promoter
28	LOC_Os04g13030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7178837	7184935	-	promoter
28	LOC_Os12g18430	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	10658207	10659919	+	promoter,downstream
28	LOC_Os09g06430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3026830	3029359	-	promoter
28	LOC_Os03g04700	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	2240223	2241020	+	promoter,downstream
28	LOC_Os09g10865	hypothetical protein	gene	hypothetical protein	chr9	5949962	5950439	+	promoter
28	LOC_Os05g20690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12131608	12132825	-	promoter,downstream
28	LOC_Os07g14380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8206705	8208547	+	promoter
28	LOC_Os05g16860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9612166	9612972	+	promoter
28	LOC_Os01g50240	hypothetical protein	gene	hypothetical protein	chr1	28863476	28865462	-	promoter
28	LOC_Os12g17470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10003566	10006282	-	promoter
28	LOC_Os12g18200	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	gene	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	chr12	10504246	10513219	-	promoter,downstream
28	LOC_Os11g39900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23311550	23314841	-	promoter
28	LOC_Os06g42890	DNA binding protein, putative	gene	DNA binding protein, putative	chr6	25766853	25768666	-	promoter
28	LOC_Os12g18160	hypothetical protein	gene	hypothetical protein	chr12	10480672	10482350	+	promoter,downstream
28	LOC_Os04g34350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	20631063	20635635	+	promoter,downstream
28	LOC_Os01g23570	hypothetical protein	gene	hypothetical protein	chr1	13232284	13233045	+	promoter
28	LOC_Os09g12060	hypothetical protein	gene	hypothetical protein	chr9	6806908	6809609	+	promoter
28	LOC_Os08g12240	hypothetical protein	gene	hypothetical protein	chr8	7205070	7206029	-	promoter
28	LOC_Os06g06660	expressed protein	gene	expressed protein	chr6	3127080	3129963	+	promoter
28	LOC_Os07g06010	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	2906349	2907690	-	promoter,downstream
28	LOC_Os04g22520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	12751676	12753095	+	promoter
28	LOC_Os01g41910	receptor-like protein kinase 5 precursor, putative	gene	receptor-like protein kinase 5 precursor, putative	chr1	23769071	23770471	+	promoter
28	LOC_Os10g08390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4569956	4574428	+	promoter,downstream
28	LOC_Os11g24230	hypothetical protein	gene	hypothetical protein	chr11	13332064	13335001	+	promoter
28	LOC_Os11g30880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17504230	17504913	-	promoter
28	LOC_Os07g18700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11049943	11053345	-	promoter
28	LOC_Os09g17410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10647364	10654032	-	promoter,downstream
28	LOC_Os05g48450	aminotransferase domain containing protein, putative, expressed	gene	aminotransferase domain containing protein, putative, expressed	chr5	27716140	27722189	+	promoter
28	LOC_Os09g17230	hypothetical protein	gene	hypothetical protein	chr9	10571524	10571998	-	promoter,downstream
28	LOC_Os03g41750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23187724	23188953	+	promoter,downstream
28	LOC_Os09g13020	hypothetical protein	gene	hypothetical protein	chr9	7511402	7511710	-	promoter
28	LOC_Os07g24080	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	13650064	13650707	-	promoter
28	LOC_Os09g09960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5419149	5423600	+	promoter,downstream
28	LOC_Os05g28900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16877265	16882852	+	promoter
28	LOC_Os01g31770	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	gene	oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed	chr1	17393223	17403446	+	promoter
28	LOC_Os09g04800	ATPase BadF/BadG/BcrA/BcrD type, putative, expressed	gene	ATPase BadF/BadG/BcrA/BcrD type, putative, expressed	chr9	2555987	2560147	+	promoter
28	LOC_Os01g10790	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr1	5759481	5763641	+	promoter
28	LOC_Os01g35690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19762836	19765704	+	promoter,downstream
28	LOC_Os02g24810	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	14388644	14389138	+	promoter,downstream
28	LOC_Os10g19040	hypothetical protein	gene	hypothetical protein	chr10	9625563	9626333	-	promoter
28	LOC_Os09g15310	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	9340114	9340719	+	promoter
28	LOC_Os04g24880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14323992	14326721	-	promoter
28	LOC_Os04g06180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3209312	3210349	-	promoter,downstream
28	LOC_Os01g60569	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	35019339	35019863	-	promoter,downstream
28	LOC_Os12g19590	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr12	11417316	11426516	+	promoter
28	LOC_Os04g13980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7804959	7805966	+	promoter,downstream
28	LOC_Os12g30440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18228429	18232125	+	promoter
28	LOC_Os08g12900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7668133	7672919	+	promoter
28	LOC_Os03g29310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	16680509	16683531	-	promoter,downstream
28	LOC_Os07g16110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9383667	9384570	-	promoter,downstream
28	LOC_Os08g34430	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	21609373	21610116	-	promoter
28	LOC_Os12g11180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6020339	6022655	-	promoter
28	LOC_Os05g06040	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	3026675	3027094	-	promoter,downstream
28	LOC_Os10g06460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3324168	3326683	-	promoter,downstream
28	LOC_Os08g14300	hypothetical protein	gene	hypothetical protein	chr8	8564032	8564349	-	promoter,downstream
28	LOC_Os12g09970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5267619	5268062	-	promoter,downstream
28	LOC_Os10g01030	hypothetical protein	gene	hypothetical protein	chr10	37648	39060	-	promoter
28	LOC_Os12g28650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16931486	16932643	+	promoter,downstream
28	LOC_Os12g08380	hypothetical protein	gene	hypothetical protein	chr12	4261592	4262206	+	promoter,downstream
28	LOC_Os02g55810	CXXXC9 - Cysteine-rich protein with paired CXXXC motifs precursor, expressed	gene	CXXXC9 - Cysteine-rich protein with paired CXXXC motifs precursor, expressed	chr2	34161819	34162499	+	promoter
28	LOC_Os09g06310	hypothetical protein	gene	hypothetical protein	chr9	2953032	2953319	+	promoter
28	LOC_Os08g26670	hypothetical protein	gene	hypothetical protein	chr8	16207170	16208035	+	promoter
28	LOC_Os03g17120	arginine biosynthesis bifunctional protein argJ 1, putative, expressed	gene	arginine biosynthesis bifunctional protein argJ 1, putative, expressed	chr3	9505667	9509873	-	promoter
28	LOC_Os12g19980	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11627628	11634296	-	promoter,downstream
28	LOC_Os10g05280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	2610005	2611094	-	promoter
28	LOC_Os12g14470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8252532	8253683	-	promoter,downstream
28	LOC_Os09g28080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17048048	17051339	-	promoter
28	LOC_Os04g07540	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	4007607	4008152	+	promoter,downstream
28	LOC_Os10g20680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10387607	10388881	+	promoter,downstream
28	LOC_Os12g10000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5294432	5298002	-	promoter
28	LOC_Os07g15900	hypothetical protein	gene	hypothetical protein	chr7	9240231	9241830	-	promoter,downstream
28	LOC_Os09g32972	MYB protein, putative	gene	MYB protein, putative	chr9	19681668	19682492	+	promoter
28	LOC_Os07g19580	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	11598282	11600159	-	promoter,downstream
28	LOC_Os04g06460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3360134	3360601	-	promoter,downstream
28	LOC_Os05g10530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5723034	5726325	+	promoter
28	LOC_Os10g10740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5958548	5959156	+	promoter,downstream
28	LOC_Os03g36750	cbbY, putative, expressed	gene	cbbY, putative, expressed	chr3	20378127	20385586	+	promoter
28	LOC_Os10g20080	hypothetical protein	gene	hypothetical protein	chr10	10008212	10009469	+	promoter
28	LOC_Os01g37980	vesicle transport v-SNARE protein, putative, expressed	gene	vesicle transport v-SNARE protein, putative, expressed	chr1	21274573	21277770	+	promoter
28	LOC_Os10g13694	expressed protein	gene	expressed protein	chr10	7450715	7457638	+	promoter
28	LOC_Os01g33920	hypothetical protein	gene	hypothetical protein	chr1	18657357	18657647	-	promoter
28	LOC_Os06g15080	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	8550223	8550669	+	promoter,downstream
28	LOC_Os06g04780	coiled-coil domain-containing protein 97, putative, expressed	gene	coiled-coil domain-containing protein 97, putative, expressed	chr6	2083593	2086401	+	promoter
28	LOC_Os10g17100	hypothetical protein	gene	hypothetical protein	chr10	8499621	8501007	-	promoter
28	LOC_Os12g18020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	10357863	10361146	-	promoter
28	LOC_Os03g32670	hypothetical protein	gene	hypothetical protein	chr3	18710755	18711051	+	promoter,downstream
28	LOC_Os01g16510	expressed protein	gene	expressed protein	chr1	9369575	9372650	+	promoter
28	LOC_Os11g26549	unknown	gene	unknown	chr11	14751235	14751736	+	promoter,downstream
28	LOC_Os02g25560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14925377	14928977	+	promoter
28	LOC_Os05g19140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11103536	11110258	-	promoter,downstream
28	LOC_Os11g43300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25650483	25652381	+	promoter
28	LOC_Os11g25200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13893929	13894433	-	promoter,downstream
28	LOC_Os09g35540	expressed protein	gene	expressed protein	chr9	20422659	20424604	+	promoter
28	LOC_Os10g02030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	644823	650021	-	promoter
28	LOC_Os03g36870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20456579	20457364	+	promoter,downstream
28	LOC_Os11g28300	uncharacterized protein family UPF0016 domain containing protein, expressed	gene	uncharacterized protein family UPF0016 domain containing protein, expressed	chr11	15810187	15814808	+	promoter
28	LOC_Os06g50706	expressed protein	gene	expressed protein	chr6	30681364	30683924	+	promoter
28	LOC_Os06g34300	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	19954812	19955737	-	promoter,downstream
28	LOC_Os05g26386	prolamin precursor, putative, expressed	gene	prolamin precursor, putative, expressed	chr5	15283257	15283880	+	promoter,downstream
28	LOC_Os04g39320	expressed protein	gene	expressed protein	chr4	23223231	23225105	-	promoter
28	LOC_Os07g29170	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr7	17073846	17079874	+	promoter,downstream
28	LOC_Os06g48410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29280208	29281557	-	promoter,downstream
28	LOC_Os01g47970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27449078	27451558	+	promoter,downstream
28	LOC_Os11g12580	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	7062640	7064851	+	promoter
28	LOC_Os02g20360	tyrosine aminotransferase, putative, expressed	gene	tyrosine aminotransferase, putative, expressed	chr2	11997090	12002629	-	promoter
28	LOC_Os09g13030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7511888	7514754	-	promoter
28	LOC_Os02g21770	hypothetical protein	gene	hypothetical protein	chr2	12940359	12940869	-	promoter
28	LOC_Os04g06090	cysteine-rich receptor-like protein kinase 37 precursor, putative	gene	cysteine-rich receptor-like protein kinase 37 precursor, putative	chr4	3160812	3162487	+	promoter,downstream
28	LOC_Os12g04970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2147803	2149470	-	promoter,downstream
28	LOC_Os02g16590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9479608	9484114	+	promoter
28	LOC_Os04g10490	hypothetical protein	gene	hypothetical protein	chr4	5700326	5700598	+	promoter
28	LOC_Os11g01074	RNase P subunit p30, putative, expressed	gene	RNase P subunit p30, putative, expressed	chr11	34928	43608	+	promoter
28	LOC_Os01g31250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17090416	17091657	-	promoter,downstream
28	LOC_Os03g36520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	20220024	20221126	+	promoter,downstream
28	LOC_Os08g14550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8745237	8750708	+	promoter
28	LOC_Os03g32610	hypothetical protein	gene	hypothetical protein	chr3	18662048	18663019	-	promoter,downstream
28	LOC_Os06g40670	hypothetical protein	gene	hypothetical protein	chr6	24242969	24243382	-	promoter,downstream
28	LOC_Os01g71530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	41423915	41430280	+	promoter
28	LOC_Os12g20000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11639442	11642329	+	promoter,downstream
28	LOC_Os11g13660	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	7482529	7483002	+	promoter
28	LOC_Os03g43460	hypothetical protein	gene	hypothetical protein	chr3	24238149	24238580	-	promoter
28	LOC_Os03g35910	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19916195	19918630	-	promoter,downstream
28	LOC_Os03g35970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19949777	19954353	-	promoter,downstream
28	LOC_Os05g17560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10087729	10088576	-	promoter,downstream
28	LOC_Os06g35850	lectin protein kinase family protein, putative, expressed	gene	lectin protein kinase family protein, putative, expressed	chr6	20914617	20917500	+	promoter
28	LOC_Os01g54670	coiled-coil domain-containing protein 25, putative, expressed	gene	coiled-coil domain-containing protein 25, putative, expressed	chr1	31452288	31456507	-	promoter
28	LOC_Os06g50330	senescence-associated protein, putative, expressed	gene	senescence-associated protein, putative, expressed	chr6	30463799	30467104	-	promoter
28	LOC_Os04g29510	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	17364817	17365254	+	promoter
28	LOC_Os03g03230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	1371177	1372898	+	promoter
28	LOC_Os07g32010	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr7	19036675	19038625	+	promoter
28	LOC_Os02g14800	expressed protein	gene	expressed protein	chr2	8209594	8223355	+	promoter
28	LOC_Os06g29430	cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed	gene	cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed	chr6	16851006	16857875	+	promoter
28	LOC_Os07g23244	ribosomal protein L23 family protein, putative, expressed	gene	ribosomal protein L23 family protein, putative, expressed	chr7	13097617	13102797	+	promoter
28	LOC_Os09g12020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6769735	6771366	+	promoter
28	LOC_Os04g19270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10705462	10712128	-	promoter,downstream
28	LOC_Os04g43730	OsWAK51 - OsWAK receptor-like protein kinase, expressed	gene	OsWAK51 - OsWAK receptor-like protein kinase, expressed	chr4	25699618	25703158	-	promoter,downstream
28	LOC_Os08g26460	hypothetical protein	gene	hypothetical protein	chr8	16118057	16118518	-	promoter
28	LOC_Os11g14310	hypothetical protein	gene	hypothetical protein	chr11	8028564	8028842	+	promoter,downstream
28	LOC_Os05g16430	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	9321630	9328284	+	promoter
28	LOC_Os02g35590	glutathione S-transferase, putative, expressed	gene	glutathione S-transferase, putative, expressed	chr2	21404863	21407815	-	promoter
28	LOC_Os11g28730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16150211	16155894	-	promoter
28	LOC_Os01g10390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	5469119	5472013	+	promoter,downstream
28	LOC_Os12g33170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20045351	20046727	-	promoter
28	LOC_Os06g05490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	2481600	2482289	+	promoter
28	LOC_Os09g03840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	1943739	1944482	-	promoter,downstream
28	LOC_Os05g06000	hypothetical protein	gene	hypothetical protein	chr5	3003400	3003810	+	promoter
28	LOC_Os08g24840	hypothetical protein	gene	hypothetical protein	chr8	15023871	15024398	-	promoter
28	LOC_Os06g28320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16090332	16091044	-	promoter
28	LOC_Os05g33460	mTERF domain containing protein, expressed	gene	mTERF domain containing protein, expressed	chr5	19594331	19597421	-	promoter,downstream
28	LOC_Os02g19450	ATPase, AAA family protein, expressed	gene	ATPase, AAA family protein, expressed	chr2	11361414	11363761	+	promoter
28	LOC_Os10g08400	hypothetical protein	gene	hypothetical protein	chr10	4579087	4580537	-	promoter,downstream
28	LOC_Os04g25590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	14824606	14826773	-	promoter
28	LOC_Os12g18760	peptidase family C78 domain containing protein, expressed	gene	peptidase family C78 domain containing protein, expressed	chr12	10845553	10853694	+	promoter
28	LOC_Os04g38830	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	22903824	22906554	-	promoter
28	LOC_Os02g25050	hypothetical protein	gene	hypothetical protein	chr2	14520446	14521781	+	promoter
28	LOC_Os08g33730	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	21059817	21060263	+	promoter
28	LOC_Os07g19260	hypothetical protein	gene	hypothetical protein	chr7	11401988	11402719	+	promoter,downstream
28	LOC_Os04g11020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5979696	5981691	+	promoter
28	LOC_Os04g26670	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	15557607	15558712	+	promoter
28	LOC_Os01g33400	helix-loop-helix DNA-binding domain containing protein	gene	helix-loop-helix DNA-binding domain containing protein	chr1	18385247	18385881	-	promoter
28	LOC_Os03g43180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	24083152	24083475	-	promoter,downstream
28	LOC_Os03g32990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18858777	18859367	-	promoter,downstream
28	LOC_Os12g11190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6027279	6028277	+	promoter
28	LOC_Os07g29110	hypothetical protein	gene	hypothetical protein	chr7	17052219	17052702	+	promoter,downstream
28	LOC_Os10g24110	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	12284424	12286928	+	promoter,downstream
28	LOC_Os10g10610	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	5879334	5881176	-	promoter
28	LOC_Os08g15300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	9300982	9305702	-	promoter,downstream
28	LOC_Os12g14000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7955709	7956482	-	promoter,downstream
28	LOC_Os12g08340	stress responsive protein, putative	gene	stress responsive protein, putative	chr12	4245714	4246500	-	promoter,downstream
28	LOC_Os01g21200	hypothetical protein	gene	hypothetical protein	chr1	11824136	11825078	-	promoter
28	LOC_Os09g11410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6353479	6355849	+	promoter
28	LOC_Os11g47200	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	27867376	27870612	-	promoter
28	LOC_Os05g26359	PROLM6 - Prolamin precursor, putative, expressed	gene	PROLM6 - Prolamin precursor, putative, expressed	chr5	15275571	15276218	+	promoter,downstream
28	LOC_Os08g29480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	18066418	18069090	+	promoter
28	LOC_Os04g05250	PE-PGRS family protein, putative	gene	PE-PGRS family protein, putative	chr4	2611885	2612570	+	promoter,downstream
28	LOC_Os04g21420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12095219	12096451	+	promoter,downstream
28	LOC_Os06g39010	hypothetical protein	gene	hypothetical protein	chr6	23156564	23157463	+	promoter,downstream
28	LOC_Os05g27034	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15660411	15664122	+	promoter
28	LOC_Os12g24750	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14197292	14199906	+	promoter
28	LOC_Os02g28930	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	17126667	17127107	+	promoter,downstream
28	LOC_Os07g49170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29446478	29449235	+	promoter
28	LOC_Os12g30880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	18517539	18520520	-	promoter,downstream
28	LOC_Os05g17680	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	10176686	10177243	+	promoter
28	LOC_Os06g05770	hypothetical protein	gene	hypothetical protein	chr6	2611136	2611802	+	promoter,downstream
28	LOC_Os01g10940	S-adenosylmethionine synthetase 2, putative	gene	S-adenosylmethionine synthetase 2, putative	chr1	5832613	5833107	-	promoter
28	LOC_Os02g36080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	21694310	21697006	+	promoter,downstream
28	LOC_Os09g13990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8243988	8245259	+	promoter,downstream
28	LOC_Os05g28800	LIPLESS1, putative	gene	LIPLESS1, putative	chr5	16825507	16826395	-	promoter
28	LOC_Os03g30280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17277415	17278031	-	promoter,downstream
28	LOC_Os10g13800	ufm1-conjugating enzyme 1, putative, expressed	gene	ufm1-conjugating enzyme 1, putative, expressed	chr10	7511694	7514609	+	promoter
28	LOC_Os09g02020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	703295	709944	-	promoter,downstream
28	LOC_Os07g24530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13962005	13966386	+	promoter
28	LOC_Os04g18950	expressed protein	gene	expressed protein	chr4	10523460	10523950	+	promoter,downstream
28	LOC_Os02g12220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6366274	6369534	-	promoter
28	LOC_Os01g28140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	15768387	15774307	+	promoter
28	LOC_Os12g24110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13710442	13717175	+	promoter,downstream
28	LOC_Os12g35160	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	21356036	21356554	+	promoter,downstream
28	LOC_Os02g21250	clathrin adaptor complex small chain domain containing protein, expressed	gene	clathrin adaptor complex small chain domain containing protein, expressed	chr2	12609019	12613257	+	promoter
28	LOC_Os12g26980	THION40 - Plant thionin family protein precursor	gene	THION40 - Plant thionin family protein precursor	chr12	15802083	15802367	+	promoter
28	LOC_Os08g42740	IBR domain containing protein, putative, expressed	gene	IBR domain containing protein, putative, expressed	chr8	27044655	27052936	+	promoter
28	LOC_Os12g09790	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr12	5183067	5185309	-	promoter
28	LOC_Os07g27710	hypothetical protein	gene	hypothetical protein	chr7	16164795	16165172	+	promoter,downstream
28	LOC_Os04g02800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1083006	1083527	-	promoter,downstream
28	LOC_Os10g21780	hypothetical protein	gene	hypothetical protein	chr10	11101969	11102307	+	promoter,downstream
28	LOC_Os10g20700	hypothetical protein	gene	hypothetical protein	chr10	10402632	10403506	-	promoter
28	LOC_Os07g25280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14439271	14440569	-	promoter,downstream
28	LOC_Os11g19900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11456335	11456535	+	promoter,downstream
28	LOC_Os04g07380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3924476	3927216	+	promoter,downstream
28	LOC_Os07g10550	cyclin-related protein, putative, expressed	gene	cyclin-related protein, putative, expressed	chr7	5701784	5710288	-	promoter
28	LOC_Os04g11970	O-methyltransferase, putative, expressed	gene	O-methyltransferase, putative, expressed	chr4	6560068	6562330	+	promoter
28	LOC_Os08g12700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7524430	7530611	-	promoter,downstream
28	LOC_Os10g17190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8562208	8562997	+	promoter,downstream
28	LOC_Os01g37390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20875232	20876443	-	promoter,downstream
28	LOC_Os07g48210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28797277	28800054	-	promoter
28	LOC_Os02g32990	expressed protein	gene	expressed protein	chr2	19608168	19609206	+	promoter
28	LOC_Os08g26020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	15826115	15829153	+	promoter
28	LOC_Os06g38280	hypothetical protein	gene	hypothetical protein	chr6	22643581	22643962	+	promoter
28	LOC_Os04g33130	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	19885625	19886341	+	promoter
28	LOC_Os04g51480	expressed protein	gene	expressed protein	chr4	30310425	30311161	+	promoter
28	LOC_Os09g12910	hypothetical protein	gene	hypothetical protein	chr9	7437727	7438686	+	promoter,downstream
28	LOC_Os07g31599	expressed protein	gene	expressed protein	chr7	18760294	18762732	+	promoter
28	LOC_Os11g25270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13938452	13940212	+	promoter
28	LOC_Os09g08770	hypothetical protein	gene	hypothetical protein	chr9	4624216	4627892	+	promoter,downstream
28	LOC_Os12g28620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16917922	16920906	+	promoter
28	LOC_Os12g08660	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	4393248	4395274	-	promoter
28	LOC_Os02g35860	expressed protein	gene	expressed protein	chr2	21537741	21543073	+	promoter
28	LOC_Os06g31730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18427604	18434188	+	promoter
28	LOC_Os02g30590	hypothetical protein	gene	hypothetical protein	chr2	18203314	18203817	-	promoter
28	LOC_Os04g14360	hypothetical protein	gene	hypothetical protein	chr4	8035930	8037547	-	promoter
28	LOC_Os02g28890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17103378	17104592	-	promoter,downstream
28	LOC_Os07g07310	polynucleotide phosphorylase, putative, expressed	gene	polynucleotide phosphorylase, putative, expressed	chr7	3644692	3655755	-	promoter
28	LOC_Os12g04920	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr12	2115499	2116316	+	promoter
28	LOC_Os06g15030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8520743	8522333	-	promoter,downstream
28	LOC_Os07g24350	homeobox domain containing protein	gene	homeobox domain containing protein	chr7	13849981	13850590	-	promoter
28	LOC_Os08g16880	sas10/Utp3 family protein, expressed	gene	sas10/Utp3 family protein, expressed	chr8	10328372	10334447	+	promoter
28	LOC_Os08g04270	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr8	2076237	2082330	+	promoter
28	LOC_Os03g13660	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	7388271	7388633	-	promoter,downstream
28	LOC_Os04g21050	hypothetical protein	gene	hypothetical protein	chr4	11822595	11822921	-	promoter,downstream
28	LOC_Os10g24120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12287570	12291651	-	promoter,downstream
28	LOC_Os10g12149	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6775470	6776210	-	promoter
28	LOC_Os10g02970	Leucine rich repeat N-terminal domain containing protein, putative, expressed	gene	Leucine rich repeat N-terminal domain containing protein, putative, expressed	chr10	1222533	1226038	-	promoter
28	LOC_Os06g48420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29286815	29288164	-	promoter,downstream
28	LOC_Os03g23130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13372799	13373491	-	promoter
28	LOC_Os04g16940	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr4	9257969	9260643	-	promoter,downstream
28	LOC_Os10g09950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5412035	5414220	-	promoter,downstream
28	LOC_Os11g14320	hypothetical protein	gene	hypothetical protein	chr11	8030996	8032972	-	promoter
28	LOC_Os10g20990	ribosomal protein S12 containing protein	gene	ribosomal protein S12 containing protein	chr10	10554729	10559060	-	promoter
28	LOC_Os05g07590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4070505	4071995	+	promoter
28	LOC_Os06g20010	RNA recognition motif containing protein, putative	gene	RNA recognition motif containing protein, putative	chr6	11473474	11473743	-	promoter,downstream
28	LOC_Os08g17850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	10949123	10949781	+	promoter,downstream
28	LOC_Os09g37160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	21433408	21436663	+	promoter
28	LOC_Os07g22160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12377064	12377585	+	promoter,downstream
28	LOC_Os12g22670	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	12801826	12803070	+	promoter,downstream
28	LOC_Os05g29020	expressed protein	gene	expressed protein	chr5	16954286	16957961	+	promoter
28	LOC_Os08g21390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	12759222	12761127	+	promoter
28	LOC_Os10g17020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8456713	8458581	+	promoter
28	LOC_Os04g06560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3446610	3448483	-	promoter
28	LOC_Os10g17140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8533760	8534722	+	promoter
28	LOC_Os10g38420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	20456792	20458014	+	promoter
28	LOC_Os06g21080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12175617	12177609	+	promoter
28	LOC_Os01g21890	unknown	gene	unknown	chr1	12281883	12289743	-	promoter
28	LOC_Os01g46020	TATA-binding protein-associated factor TAFII55 family protein, putative, expressed	gene	TATA-binding protein-associated factor TAFII55 family protein, putative, expressed	chr1	26162742	26165428	+	promoter
28	LOC_Os06g42190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25327165	25333319	+	promoter
28	LOC_Os01g38750	hypothetical protein	gene	hypothetical protein	chr1	21754145	21754865	+	promoter
28	LOC_Os06g25960	hypothetical protein	gene	hypothetical protein	chr6	15197859	15199277	-	promoter,downstream
28	LOC_Os12g28860	hypothetical protein	gene	hypothetical protein	chr12	17057083	17057523	-	promoter
28	LOC_Os11g26230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	14551798	14560273	+	promoter,downstream
28	LOC_Os06g21190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12243414	12246474	-	promoter
28	LOC_Os04g20370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11389668	11390861	-	promoter,downstream
28	LOC_Os02g29360	expressed protein	gene	expressed protein	chr2	17433950	17435646	+	promoter
28	LOC_Os02g41550	FAD binding domain of DNA photolyase domain containing protein, expressed	gene	FAD binding domain of DNA photolyase domain containing protein, expressed	chr2	24909993	24916230	+	promoter
28	LOC_Os06g01110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	107281	108048	+	promoter,downstream
28	LOC_Os02g46570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	28391863	28393311	+	promoter,downstream
28	LOC_Os05g26980	hypothetical protein	gene	hypothetical protein	chr5	15621931	15622269	-	promoter
28	LOC_Os05g10660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5831456	5834769	-	promoter
28	LOC_Os10g07080	expressed protein	gene	expressed protein	chr10	3726942	3729342	+	promoter
28	LOC_Os06g01430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	257208	260132	-	promoter
28	LOC_Os04g32580	expressed protein	gene	expressed protein	chr4	19438450	19440745	+	promoter
28	LOC_Os03g46630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	26385743	26387614	-	promoter
28	LOC_Os05g28390	hypothetical protein	gene	hypothetical protein	chr5	16575283	16575981	+	promoter
28	LOC_Os01g19000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	10733953	10738308	+	promoter,downstream
28	LOC_Os09g23939	pollen allergen Cyn d 23, putative	gene	pollen allergen Cyn d 23, putative	chr9	14273843	14274247	-	promoter,downstream
28	LOC_Os02g38386	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr2	23203825	23204587	+	promoter
28	LOC_Os10g02400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	872656	873318	+	promoter
28	LOC_Os12g10080	hypothetical protein	gene	hypothetical protein	chr12	5335762	5336349	-	promoter,downstream
28	LOC_Os11g16950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9399430	9400954	+	promoter
28	LOC_Os08g14744	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8867622	8872223	-	promoter
28	LOC_Os11g31180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17684335	17687975	+	promoter
28	LOC_Os10g18990	receptor kinase 2, putative	gene	receptor kinase 2, putative	chr10	9595988	9599258	+	promoter
28	LOC_Os11g40350	hypothetical protein	gene	hypothetical protein	chr11	23587645	23587959	-	promoter
28	LOC_Os10g09490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5136087	5139995	+	promoter
28	LOC_Os10g25880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	13341390	13344442	+	promoter
28	LOC_Os08g35470	exo70 exocyst complex subunit, putative, expressed	gene	exo70 exocyst complex subunit, putative, expressed	chr8	22350555	22352729	+	promoter
28	LOC_Os09g24404	chloroplast 50S ribosomal protein L2, putative	gene	chloroplast 50S ribosomal protein L2, putative	chr9	14504674	14506158	+	promoter
28	LOC_Os02g07624	gamma-thionin family domain containing protein	gene	gamma-thionin family domain containing protein	chr2	3946042	3946540	+	promoter
28	LOC_Os06g30630	hypothetical protein	gene	hypothetical protein	chr6	17730828	17731176	+	promoter
28	LOC_Os08g29940	hypothetical protein	gene	hypothetical protein	chr8	18391836	18392205	-	promoter
28	LOC_Os02g32230	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	19030106	19035150	+	promoter
28	LOC_Os08g13450	hypothetical protein	gene	hypothetical protein	chr8	8006176	8006619	-	promoter,downstream
28	LOC_Os08g25540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	15530703	15532151	+	promoter,downstream
28	LOC_Os10g02050	hypothetical protein	gene	hypothetical protein	chr10	662594	662881	+	promoter
28	LOC_Os07g16360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9556182	9560112	+	promoter,downstream
28	LOC_Os04g12290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6781190	6782728	+	promoter,downstream
28	LOC_Os12g33879	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20392879	20393442	-	promoter
28	LOC_Os09g08170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4232040	4234194	+	promoter,downstream
28	LOC_Os02g55430	alginate regulatory protein AlgP, putative, expressed	gene	alginate regulatory protein AlgP, putative, expressed	chr2	33947411	33949182	+	promoter
28	LOC_Os03g22990	OsFBX84 - F-box domain containing protein, expressed	gene	OsFBX84 - F-box domain containing protein, expressed	chr3	13271497	13273969	+	promoter
28	LOC_Os02g07390	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	3820396	3820992	+	promoter
28	LOC_Os02g25390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14797384	14800070	+	promoter
28	LOC_Os01g33390	hypothetical protein	gene	hypothetical protein	chr1	18383112	18383740	-	promoter,downstream
28	LOC_Os08g20350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12219014	12225539	-	promoter,downstream
28	LOC_Os07g07850	hypothetical protein	gene	hypothetical protein	chr7	3937010	3937219	-	promoter,downstream
28	LOC_Os11g30220	hypothetical protein	gene	hypothetical protein	chr11	17105297	17106350	+	promoter,downstream
28	LOC_Os04g06590	expressed protein	gene	expressed protein	chr4	3460848	3466386	+	promoter
28	LOC_Os11g28870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16252404	16253249	+	promoter,downstream
28	LOC_Os04g12900	glucosyltransferase, putative	gene	glucosyltransferase, putative	chr4	7123960	7126165	+	promoter
28	LOC_Os06g15660	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	8866975	8869144	-	promoter
28	LOC_Os11g20179	expressed protein	gene	expressed protein	chr11	11660638	11663035	+	promoter,downstream
28	LOC_Os08g14510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	8723968	8724396	+	promoter,downstream
28	LOC_Os07g01120	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	69090	69891	+	promoter
28	LOC_Os08g14520	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	8724763	8725829	+	promoter,downstream
28	LOC_Os04g19870	expressed protein	gene	expressed protein	chr4	11072182	11076063	+	promoter
28	LOC_Os08g39180	OsWAK73 - OsWAK receptor-like protein kinase	gene	OsWAK73 - OsWAK receptor-like protein kinase	chr8	24747340	24752621	-	promoter,downstream
28	LOC_Os10g17830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8953941	8954642	+	promoter,downstream
28	LOC_Os07g14740	harpin-induced protein 1 domain containing protein, expressed	gene	harpin-induced protein 1 domain containing protein, expressed	chr7	8405690	8406737	-	promoter
28	LOC_Os10g15100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7927853	7928861	+	promoter
28	LOC_Os05g17300	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9911245	9911733	+	promoter,downstream
28	LOC_Os03g46820	spidroin-1, putative	gene	spidroin-1, putative	chr3	26469544	26470458	+	promoter
28	LOC_Os04g02120	expressed protein	gene	expressed protein	chr4	691759	694277	-	promoter
28	LOC_Os01g13620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	7634648	7639915	+	promoter
28	LOC_Os06g29940	hypothetical protein	gene	hypothetical protein	chr6	17239861	17240232	-	promoter
28	LOC_Os12g30290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	18137575	18140480	-	promoter
28	LOC_Os08g30095	expressed protein	gene	expressed protein	chr8	18497440	18497950	+	promoter
28	LOC_Os11g28980	GPI transamidase component Gpi16 subunit family protein, putative, expressed	gene	GPI transamidase component Gpi16 subunit family protein, putative, expressed	chr11	16301344	16307108	+	promoter
28	LOC_Os07g48890	expressed protein	gene	expressed protein	chr7	29253454	29258945	+	promoter
28	LOC_Os06g28440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	16177851	16178333	+	promoter
28	LOC_Os08g27676	hypothetical protein	gene	hypothetical protein	chr8	16865429	16865893	-	promoter
28	LOC_Os04g19760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11029236	11032297	+	promoter
28	LOC_Os06g15150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8583739	8589596	-	promoter,downstream
28	LOC_Os10g22160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	11374407	11374889	-	promoter,downstream
28	LOC_Os12g27450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16146911	16148774	-	promoter
28	LOC_Os04g06950	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3662372	3662941	+	promoter
28	LOC_Os01g40620	Uncharacterized ACR, COG1565 containing protein, putative, expressed	gene	Uncharacterized ACR, COG1565 containing protein, putative, expressed	chr1	22947120	22951143	+	promoter
28	LOC_Os01g15420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	8638048	8638503	+	promoter,downstream
28	LOC_Os12g10100	ligA, putative	gene	ligA, putative	chr12	5346839	5347288	+	promoter
28	LOC_Os09g21010	hypothetical protein	gene	hypothetical protein	chr9	12670658	12671023	+	promoter
28	LOC_Os06g14990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8500519	8501628	+	promoter,downstream
28	LOC_Os04g19300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10727194	10730831	-	promoter,downstream
28	LOC_Os09g15970	hypothetical protein	gene	hypothetical protein	chr9	9759791	9760995	+	promoter
28	LOC_Os03g16260	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr3	8962903	8965744	-	promoter
28	LOC_Os07g15720	hypothetical protein	gene	hypothetical protein	chr7	9135936	9136355	+	promoter,downstream
28	LOC_Os07g37120	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr7	22240726	22242539	-	promoter
28	LOC_Os04g28920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16972253	16973686	+	promoter,downstream
28	LOC_Os08g21180	maSp2a, putative	gene	maSp2a, putative	chr8	12647749	12648561	-	promoter,downstream
28	LOC_Os04g16520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8975100	8976707	+	promoter,downstream
28	LOC_Os02g20780	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr2	12269469	12271214	-	promoter
28	LOC_Os01g71160	xylanase inhibitor, putative, expressed	gene	xylanase inhibitor, putative, expressed	chr1	41175348	41176780	+	promoter
28	LOC_Os07g41680	dehydrodolichyl diphosphate synthase, putative, expressed	gene	dehydrodolichyl diphosphate synthase, putative, expressed	chr7	24972576	24975592	+	promoter
28	LOC_Os09g14180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8387418	8389942	+	promoter,downstream
28	LOC_Os10g20630	vacuolar-sorting receptor precursor, putative, expressed	gene	vacuolar-sorting receptor precursor, putative, expressed	chr10	10339965	10347332	-	promoter
28	LOC_Os10g36950	DUF677 domain containing protein, putative, expressed	gene	DUF677 domain containing protein, putative, expressed	chr10	19729517	19732267	+	promoter
28	LOC_Os05g01650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	384869	391523	-	promoter,downstream
28	LOC_Os05g49560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28363440	28368091	+	promoter
28	LOC_Os08g24920	hypothetical protein	gene	hypothetical protein	chr8	15085852	15087209	+	promoter
28	LOC_Os04g12250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6760748	6766165	+	promoter,downstream
28	LOC_Os01g32210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17630994	17634645	-	promoter,downstream
28	LOC_Os07g20320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11725145	11726371	+	promoter
28	LOC_Os08g21660	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr8	12904545	12911486	-	promoter
28	LOC_Os04g29140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17111801	17113476	-	promoter
28	LOC_Os01g02520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	820344	823007	+	promoter
28	LOC_Os02g20090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11832009	11834182	+	promoter,downstream
28	LOC_Os10g12640	ligA, putative	gene	ligA, putative	chr10	7067645	7068247	+	promoter
28	LOC_Os03g43169	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	24082127	24082629	+	promoter,downstream
28	LOC_Os11g45020	hypothetical protein	gene	hypothetical protein	chr11	26779049	26780977	+	promoter
28	LOC_Os09g02090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	768419	772116	-	promoter,downstream
28	LOC_Os01g08620	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	4290014	4290325	+	promoter,downstream
28	LOC_Os09g10920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6000875	6005452	+	promoter
28	LOC_Os05g19570	expansin precursor, putative, expressed	gene	expansin precursor, putative, expressed	chr5	11393044	11394830	-	promoter
28	LOC_Os02g26260	hypothetical protein	gene	hypothetical protein	chr2	15416714	15416974	-	promoter
28	LOC_Os11g37010	expressed protein	gene	expressed protein	chr11	21384112	21385964	+	promoter
28	LOC_Os02g30750	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	18318959	18320395	+	promoter,downstream
28	LOC_Os12g25310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14578579	14579971	+	promoter,downstream
28	LOC_Os07g15700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	9123910	9124437	+	promoter,downstream
28	LOC_Os07g35840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	21456310	21459290	+	promoter
28	LOC_Os12g33770	hypothetical protein	gene	hypothetical protein	chr12	20342443	20343518	+	promoter
28	LOC_Os07g28190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16458465	16459605	+	promoter,downstream
28	LOC_Os04g02354	expressed protein	gene	expressed protein	chr4	834447	836343	+	promoter
28	LOC_Os01g19110	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10796071	10797981	+	promoter
28	LOC_Os05g27380	hypothetical protein	gene	hypothetical protein	chr5	15862308	15862949	-	promoter
28	LOC_Os06g36900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21740287	21741402	-	promoter,downstream
28	LOC_Os12g27320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16046753	16047640	-	promoter
28	LOC_Os01g47160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	26954956	26957982	+	promoter
28	LOC_Os11g28910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	16263343	16270204	+	promoter
28	LOC_Os04g05640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2872369	2873154	-	promoter
28	LOC_Os05g10600	hypothetical protein	gene	hypothetical protein	chr5	5776673	5777095	-	promoter,downstream
28	LOC_Os04g14680	OsAPx3 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8, expressed	gene	OsAPx3 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8, expressed	chr4	8234511	8237142	-	promoter
28	LOC_Os06g28230	hypothetical protein	gene	hypothetical protein	chr6	16038442	16038717	-	promoter
28	LOC_Os07g45860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	27362612	27363037	+	promoter,downstream
28	LOC_Os09g03610	flowering time control protein FCA, putative, expressed	gene	flowering time control protein FCA, putative, expressed	chr9	1789446	1798611	+	promoter
28	LOC_Os09g02680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1188403	1192805	+	promoter,downstream
28	LOC_Os12g33040	hypothetical protein	gene	hypothetical protein	chr12	19930334	19931884	+	promoter
28	LOC_Os04g22670	hypothetical protein	gene	hypothetical protein	chr4	12837345	12837545	-	promoter,downstream
28	LOC_Os09g20790	hypothetical protein	gene	hypothetical protein	chr9	12520761	12520997	-	promoter
28	LOC_Os10g05460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2690337	2691369	-	promoter,downstream
28	LOC_Os03g17720	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	9859386	9859808	+	promoter
28	LOC_Os06g12730	hypothetical protein	gene	hypothetical protein	chr6	6949488	6950000	-	promoter
28	LOC_Os08g31000	expressed protein	gene	expressed protein	chr8	19136896	19139980	+	promoter
28	LOC_Os02g58690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35853219	35855855	-	promoter,downstream
28	LOC_Os01g36270	hypothetical protein	gene	hypothetical protein	chr1	20099596	20101239	+	promoter
28	LOC_Os11g39400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	22987824	22989236	+	promoter
28	LOC_Os02g37460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	22608422	22609936	+	promoter
28	LOC_Os08g16780	sin-like protein conserved region containing protein, expressed	gene	sin-like protein conserved region containing protein, expressed	chr8	10256718	10267937	+	promoter
28	LOC_Os06g49920	expressed protein	gene	expressed protein	chr6	30220420	30222864	+	promoter
28	LOC_Os03g21340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	12206986	12207339	+	promoter
28	LOC_Os09g11070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6144539	6147870	-	promoter,downstream
28	LOC_Os11g16340	hypothetical protein	gene	hypothetical protein	chr11	9012830	9014177	+	promoter
28	LOC_Os06g39330	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr6	23332340	23334041	-	promoter
28	LOC_Os01g23300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13084928	13085663	+	promoter,downstream
28	LOC_Os12g09410	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	4930687	4932183	+	promoter,downstream
28	LOC_Os07g16330	hypothetical protein	gene	hypothetical protein	chr7	9532790	9533857	+	promoter
28	LOC_Os01g16920	embryonic protein DC-8, putative, expressed	gene	embryonic protein DC-8, putative, expressed	chr1	9678804	9679872	+	promoter
28	LOC_Os07g28010	AGAP001055-PA, putative	gene	AGAP001055-PA, putative	chr7	16336046	16336388	-	promoter,downstream
28	LOC_Os05g39630	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	23208155	23208757	+	promoter
28	LOC_Os12g23580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13358140	13364886	+	promoter,downstream
28	LOC_Os12g16530	hypothetical protein	gene	hypothetical protein	chr12	9471444	9471847	-	promoter,downstream
28	LOC_Os03g41200	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	22909826	22917028	-	promoter
28	LOC_Os01g60360	ubiquitin-conjugating enzyme, putative	gene	ubiquitin-conjugating enzyme, putative	chr1	34916639	34918366	+	promoter,downstream
28	LOC_Os09g37220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	21479161	21482858	+	promoter
28	LOC_Os03g41899	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23262604	23263050	-	promoter,downstream
28	LOC_Os07g23640	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr7	13353104	13354304	-	promoter
28	LOC_Os08g02900	expressed protein	gene	expressed protein	chr8	1237782	1238762	-	promoter
28	LOC_Os02g36130	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	21740011	21741181	+	promoter
28	LOC_Os05g42990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	24910091	24912130	+	promoter
28	LOC_Os04g12770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7059039	7062432	-	promoter,downstream
28	LOC_Os11g18850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10699564	10699830	-	promoter,downstream
28	LOC_Os04g19370	hypothetical protein	gene	hypothetical protein	chr4	10773002	10777452	+	promoter,downstream
28	LOC_Os12g17780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10173855	10175440	+	promoter,downstream
28	LOC_Os12g27710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16334011	16340121	-	promoter
28	LOC_Os11g01950	hypothetical protein	gene	hypothetical protein	chr11	512297	512948	+	promoter,downstream
28	LOC_Os02g17910	CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed	gene	CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed	chr2	10371018	10377399	+	promoter
28	LOC_Os10g12812	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7185687	7186373	+	promoter,downstream
28	LOC_Os03g30270	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	17274492	17276862	+	promoter,downstream
28	LOC_Os10g10200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5630702	5634176	+	promoter
28	LOC_Os02g16400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9345634	9352117	-	promoter,downstream
28	LOC_Os03g33280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19033171	19037174	+	promoter,downstream
28	LOC_Os04g17150	hypothetical protein	gene	hypothetical protein	chr4	9396145	9396648	+	promoter
28	LOC_Os12g23120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13067561	13073220	-	promoter,downstream
28	LOC_Os07g17730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10469713	10469985	-	promoter,downstream
28	LOC_Os06g31562	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	18355770	18356769	-	promoter,downstream
28	LOC_Os05g45600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	26367327	26370997	-	promoter
28	LOC_Os10g05320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	2626610	2627407	+	promoter
28	LOC_Os08g44710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28092894	28096199	-	promoter
28	LOC_Os10g07586	hypothetical protein	gene	hypothetical protein	chr10	4162660	4163927	-	promoter
28	LOC_Os01g64610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	37496475	37499776	-	promoter,downstream
28	LOC_Os08g21210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12659342	12663401	-	promoter
28	LOC_Os05g13904	expressed protein	gene	expressed protein	chr5	7731729	7732377	+	promoter
28	LOC_Os02g24310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14098100	14100094	-	promoter,downstream
28	LOC_Os03g47720	ankyrin, putative	gene	ankyrin, putative	chr3	27037165	27043128	+	promoter
28	LOC_Os09g30502	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	18636537	18637971	-	promoter
28	LOC_Os12g33540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20236250	20236654	-	promoter,downstream
28	LOC_Os05g16770	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9546346	9548369	-	promoter,downstream
28	LOC_Os01g71860	glycosyl hydrolases family 17, putative, expressed	gene	glycosyl hydrolases family 17, putative, expressed	chr1	41628256	41630871	+	promoter
28	LOC_Os12g32740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19745551	19748883	-	promoter
28	LOC_Os06g02660	hypothetical protein	gene	hypothetical protein	chr6	946958	948607	+	promoter
28	LOC_Os06g24320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	14222405	14224508	+	promoter,downstream
28	LOC_Os02g56660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	34727274	34730692	-	promoter,downstream
28	LOC_Os03g42160	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	23457557	23458225	+	promoter,downstream
28	LOC_Os01g02990	hypothetical protein	gene	hypothetical protein	chr1	1136241	1136624	-	promoter
28	LOC_Os01g16880	expressed protein	gene	expressed protein	chr1	9643469	9652468	-	promoter
28	LOC_Os10g28190	hypothetical protein	gene	hypothetical protein	chr10	14563059	14563372	-	promoter
28	LOC_Os05g28720	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr5	16785546	16787668	+	promoter
28	LOC_Os01g34660	RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed	gene	RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed	chr1	19109863	19112270	-	promoter
28	LOC_Os02g28620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	16928604	16935355	-	promoter,downstream
28	LOC_Os12g01310	hypothetical protein	gene	hypothetical protein	chr12	176168	176876	-	promoter,downstream
28	LOC_Os02g09580	OsFBX39 - F-box domain containing protein	gene	OsFBX39 - F-box domain containing protein	chr2	4931298	4935969	+	promoter
28	LOC_Os06g22240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	12902976	12906850	+	promoter,downstream
28	LOC_Os08g21060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12588850	12592251	+	promoter,downstream
28	LOC_Os11g27950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15611682	15614110	-	promoter,downstream
28	LOC_Os04g17090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	9356827	9357195	-	promoter
28	LOC_Os09g11610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6478408	6483267	-	promoter,downstream
28	LOC_Os09g08740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4607974	4609200	+	promoter
28	LOC_Os07g07400	zinc finger A20 and AN1 domain-containing stress-associated protein, putative	gene	zinc finger A20 and AN1 domain-containing stress-associated protein, putative	chr7	3697671	3698129	-	promoter
28	LOC_Os01g36490	hypothetical protein	gene	hypothetical protein	chr1	20250289	20250598	-	promoter,downstream
28	LOC_Os04g14420	hypothetical protein	gene	hypothetical protein	chr4	8073031	8074636	+	promoter,downstream
28	LOC_Os01g35670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19756921	19758588	+	promoter,downstream
28	LOC_Os01g39510	hypothetical protein	gene	hypothetical protein	chr1	22269003	22269502	+	promoter,downstream
28	LOC_Os09g23948	pollen allergen Cyn d 23, putative, expressed	gene	pollen allergen Cyn d 23, putative, expressed	chr9	14275637	14276297	-	promoter,downstream
28	LOC_Os05g17604	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	10112311	10126153	-	promoter
28	LOC_Os09g20070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	12022469	12023593	-	promoter,downstream
28	LOC_Os12g39480	hypothetical protein	gene	hypothetical protein	chr12	24299577	24299846	+	promoter
28	LOC_Os04g11320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6175256	6176482	-	promoter,downstream
28	LOC_Os01g54850	OsFBX24 - F-box domain containing protein, expressed	gene	OsFBX24 - F-box domain containing protein, expressed	chr1	31549611	31552008	+	promoter
28	LOC_Os04g34230	RING-H2 finger protein, putative, expressed	gene	RING-H2 finger protein, putative, expressed	chr4	20561343	20563983	+	promoter
28	LOC_Os06g48090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	29094905	29101043	+	promoter
28	LOC_Os10g33200	hypothetical protein	gene	hypothetical protein	chr10	17328735	17329572	+	promoter
28	LOC_Os04g09490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5079584	5080736	-	promoter
28	LOC_Os12g23660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13423367	13426858	-	promoter
28	LOC_Os11g14570	expressed protein	gene	expressed protein	chr11	8192667	8196576	-	promoter,downstream
28	LOC_Os09g32976	ribosomal protein L7Ae, putative, expressed	gene	ribosomal protein L7Ae, putative, expressed	chr9	19683131	19685463	-	promoter
28	LOC_Os08g21290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12703294	12703842	-	promoter,downstream
28	LOC_Os09g06370	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2993251	2995152	-	promoter,downstream
28	LOC_Os11g25440	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	14037497	14038248	-	promoter
28	LOC_Os04g05990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3095443	3096474	-	promoter,downstream
28	LOC_Os07g09260	unknown	gene	unknown	chr7	4850782	4851430	-	promoter
28	LOC_Os11g35490	leucine rich repeat protein, putative	gene	leucine rich repeat protein, putative	chr11	20330577	20333342	+	promoter
28	LOC_Os05g17820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10249738	10250430	+	promoter,downstream
28	LOC_Os12g31570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18968858	18975051	-	promoter,downstream
28	LOC_Os04g42820	hypothetical protein	gene	hypothetical protein	chr4	25159752	25160664	-	promoter
28	LOC_Os08g20270	MEMO1, putative, expressed	gene	MEMO1, putative, expressed	chr8	12169587	12176366	+	promoter
28	LOC_Os12g10604	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5650040	5656156	+	promoter,downstream
28	LOC_Os04g04850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2331280	2334907	+	promoter
28	LOC_Os07g02420	hypothetical protein	gene	hypothetical protein	chr7	830697	832034	-	promoter
28	LOC_Os03g47390	hypothetical protein	gene	hypothetical protein	chr3	26791442	26791723	-	promoter,downstream
28	LOC_Os06g22030	AT hook motif domain containing protein, expressed	gene	AT hook motif domain containing protein, expressed	chr6	12757359	12763137	-	promoter,downstream
28	LOC_Os08g11550	hypothetical protein	gene	hypothetical protein	chr8	6766736	6767071	-	promoter,downstream
28	LOC_Os05g17760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10208228	10209573	+	promoter,downstream
28	LOC_Os12g15860	hypothetical protein	gene	hypothetical protein	chr12	9039042	9039573	+	promoter,downstream
28	LOC_Os02g14220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7789660	7794499	-	promoter
28	LOC_Os04g29910	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17655623	17657830	+	promoter
28	LOC_Os04g09940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5339168	5342518	-	promoter,downstream
28	LOC_Os06g15320	hypothetical protein	gene	hypothetical protein	chr6	8694714	8695652	-	promoter
28	LOC_Os12g09820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5197963	5199147	-	promoter
28	LOC_Os06g20950	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	12108023	12110012	-	promoter
28	LOC_Os03g23860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13538334	13543890	+	promoter,downstream
28	LOC_Os10g22039	mitochondrial import inner membrane translocase subunit Tim17, putative, expressed	gene	mitochondrial import inner membrane translocase subunit Tim17, putative, expressed	chr10	11311893	11317172	+	promoter
28	LOC_Os05g30080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17343360	17344469	-	promoter
28	LOC_Os05g19820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11547955	11548651	+	promoter
28	LOC_Os02g11820	GTPase-activating protein, putative, expressed	gene	GTPase-activating protein, putative, expressed	chr2	6110092	6118738	+	promoter
28	LOC_Os02g21009	sodium/calcium exchanger protein, putative, expressed	gene	sodium/calcium exchanger protein, putative, expressed	chr2	12432283	12451808	+	promoter
28	LOC_Os02g46040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	28048051	28054207	+	promoter
28	LOC_Os05g27250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	15789487	15790409	+	promoter,downstream
28	LOC_Os09g06540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3108254	3110685	+	promoter
28	LOC_Os11g03020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	1049446	1050791	-	promoter
28	LOC_Os09g17850	acetyltransferase type B catalytic subunit, putative, expressed	gene	acetyltransferase type B catalytic subunit, putative, expressed	chr9	10921337	10925993	+	promoter
28	LOC_Os11g22650	hypothetical protein	gene	hypothetical protein	chr11	12568586	12569287	+	promoter,downstream
28	LOC_Os10g21784	hypothetical protein	gene	hypothetical protein	chr10	11105402	11109842	+	promoter
28	LOC_Os01g18760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10571683	10573197	-	promoter,downstream
28	LOC_Os01g37880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	21206552	21209787	+	promoter
28	LOC_Os10g22010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11292536	11298935	-	promoter
28	LOC_Os04g07090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3748939	3753904	+	promoter
28	LOC_Os12g44120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	27338046	27338948	+	promoter
28	LOC_Os01g27560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15380075	15380984	+	promoter,downstream
28	LOC_Os05g47460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	27131134	27133806	-	promoter
28	LOC_Os05g38130	expressed protein	gene	expressed protein	chr5	22304749	22305405	-	promoter
28	LOC_Os03g27920	hypothetical protein	gene	hypothetical protein	chr3	16031776	16033115	-	promoter,downstream
28	LOC_Os08g19600	expressed protein	gene	expressed protein	chr8	11715748	11717627	-	promoter,downstream
28	LOC_Os07g45730	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	27299098	27299793	+	promoter
28	LOC_Os02g18100	hypothetical protein	gene	hypothetical protein	chr2	10514511	10514915	+	promoter
28	LOC_Os12g19920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11604973	11609493	-	promoter
28	LOC_Os06g22800	hypothetical protein	gene	hypothetical protein	chr6	13277775	13278303	-	promoter
28	LOC_Os07g33510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	20026786	20028012	-	promoter,downstream
28	LOC_Os05g19420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11278724	11279149	-	promoter,downstream
28	LOC_Os10g06450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3315433	3322174	+	promoter,downstream
28	LOC_Os07g11220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	6175686	6179318	+	promoter
28	LOC_Os11g44740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26601691	26603318	+	promoter
28	LOC_Os08g08320	hypothetical protein	gene	hypothetical protein	chr8	4778115	4778501	-	promoter,downstream
28	LOC_Os04g36580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21914059	21918895	-	promoter
28	LOC_Os05g17900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10291357	10292472	+	promoter,downstream
28	LOC_Os02g19260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11254040	11254810	+	promoter,downstream
28	LOC_Os04g25130	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	14502803	14506877	-	promoter
28	LOC_Os01g05420	IWS1 C-terminus family protein, putative, expressed	gene	IWS1 C-terminus family protein, putative, expressed	chr1	2559858	2564373	+	promoter
28	LOC_Os02g24240	hypothetical protein	gene	hypothetical protein	chr2	14049222	14051159	+	promoter
28	LOC_Os10g08260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4477724	4483387	+	promoter,downstream
28	LOC_Os07g12120	hypothetical protein	gene	hypothetical protein	chr7	6775872	6776891	+	promoter
28	LOC_Os12g22460	hypothetical protein	gene	hypothetical protein	chr12	12674119	12674397	-	promoter,downstream
28	LOC_Os06g20020	ZOS6-03 - C2H2 zinc finger protein, expressed	gene	ZOS6-03 - C2H2 zinc finger protein, expressed	chr6	11475505	11476803	+	promoter
28	LOC_Os11g24670	ankyrin repeat family protein, putative	gene	ankyrin repeat family protein, putative	chr11	13606317	13607569	-	promoter
28	LOC_Os06g34220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19926820	19927721	-	promoter
28	LOC_Os01g29550	hypothetical protein	gene	hypothetical protein	chr1	16561743	16562021	+	promoter,downstream
28	LOC_Os12g13200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7349557	7351491	+	promoter,downstream
28	LOC_Os08g26440	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	16108280	16108606	-	promoter,downstream
28	LOC_Os10g21962	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	11268736	11269260	-	promoter
28	LOC_Os06g22330	expressed protein	gene	expressed protein	chr6	12961818	12965526	+	promoter
28	LOC_Os06g01150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	125232	126339	-	promoter,downstream
28	LOC_Os08g24710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14930366	14933640	-	promoter,downstream
28	LOC_Os10g15360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8079381	8079824	+	promoter,downstream
28	LOC_Os08g15760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9552425	9552940	-	promoter
28	LOC_Os05g03680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1598107	1600861	-	promoter,downstream
28	LOC_Os02g40380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24444914	24445246	+	promoter
28	LOC_Os06g24060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	14059604	14062936	-	promoter
28	LOC_Os02g11030	50S ribosomal protein L19, chloroplast precursor, putative, expressed	gene	50S ribosomal protein L19, chloroplast precursor, putative, expressed	chr2	5906973	5909620	-	promoter
28	LOC_Os08g11880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6964385	6966137	-	promoter
28	LOC_Os07g14300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8154903	8155994	+	promoter
28	LOC_Os06g14620	ribonucleoside-diphosphate reductase small chain, putative, expressed	gene	ribonucleoside-diphosphate reductase small chain, putative, expressed	chr6	8229483	8231133	-	promoter
28	LOC_Os09g15000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	9030993	9033712	+	promoter,downstream
28	LOC_Os02g53630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	32798674	32801858	+	promoter
28	LOC_Os06g41370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	24795550	24798356	-	promoter
28	LOC_Os02g37690	UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed	chr2	22735494	22737492	-	promoter
28	LOC_Os12g17860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	10233453	10240131	-	promoter
28	LOC_Os02g22410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13385427	13389207	+	promoter
28	LOC_Os01g08730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	4362128	4365827	+	promoter
28	LOC_Os12g42480	hypothetical protein	gene	hypothetical protein	chr12	26358002	26358809	+	promoter,downstream
28	LOC_Os05g01870	hypothetical protein	gene	hypothetical protein	chr5	506992	507351	+	promoter
28	LOC_Os11g19410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	11155699	11157422	+	promoter
28	LOC_Os07g06157	hypothetical protein	gene	hypothetical protein	chr7	2995028	2996495	-	promoter
28	LOC_Os06g01750	subtilase, putative	gene	subtilase, putative	chr6	436156	437133	+	promoter
28	LOC_Os05g09630	homeobox domain containing protein, expressed	gene	homeobox domain containing protein, expressed	chr5	5437039	5445190	+	promoter
28	LOC_Os06g01280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	179215	180423	+	promoter
28	LOC_Os04g18200	dihydrodipicolinate synthase, chloroplast precursor, putative, expressed	gene	dihydrodipicolinate synthase, chloroplast precursor, putative, expressed	chr4	10052461	10055906	+	promoter
28	LOC_Os12g33350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20141674	20141967	-	promoter
28	LOC_Os04g05689	unknown	gene	unknown	chr4	2902556	2902763	-	promoter
28	LOC_Os02g30770	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr2	18323290	18326043	+	promoter
28	LOC_Os02g43680	hypothetical protein	gene	hypothetical protein	chr2	26358015	26358512	-	promoter
28	LOC_Os09g07150	expressed protein	gene	expressed protein	chr9	3489918	3490847	-	promoter
28	LOC_Os09g09050	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr9	4820024	4826967	-	promoter,downstream
28	LOC_Os06g17760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10303735	10303980	+	promoter,downstream
28	LOC_Os04g07970	hypothetical protein	gene	hypothetical protein	chr4	4238889	4239568	-	promoter,downstream
28	LOC_Os01g39560	anthocyanin regulatory protein, putative	gene	anthocyanin regulatory protein, putative	chr1	22300191	22306812	+	promoter,downstream
28	LOC_Os01g21550	hypothetical protein	gene	hypothetical protein	chr1	12056251	12056697	+	promoter,downstream
28	LOC_Os03g23220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13434364	13441088	-	promoter,downstream
28	LOC_Os07g13510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	7736371	7736664	+	promoter
28	LOC_Os05g09110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5070211	5074284	-	promoter
28	LOC_Os04g32150	amidohydrolase family protein, expressed	gene	amidohydrolase family protein, expressed	chr4	19111337	19114922	+	promoter
28	LOC_Os04g20749	expressed protein	gene	expressed protein	chr4	11629081	11633642	+	promoter
28	LOC_Os07g41439	hypothetical protein	gene	hypothetical protein	chr7	24831696	24832452	+	promoter,downstream
28	LOC_Os08g19380	hypothetical protein	gene	hypothetical protein	chr8	11594349	11594928	-	promoter
28	LOC_Os01g25789	unknown	gene	unknown	chr1	14608274	14608471	-	promoter
28	LOC_Os06g45010	expressed protein	gene	expressed protein	chr6	27215183	27218843	-	promoter
28	LOC_Os02g38650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23351934	23356443	+	promoter,downstream
28	LOC_Os06g32530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	18923140	18926352	+	promoter
28	LOC_Os04g05170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2571238	2575389	+	promoter
28	LOC_Os12g29080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	17216942	17217568	-	promoter,downstream
28	LOC_Os10g23080	hypothetical protein	gene	hypothetical protein	chr10	11957490	11960018	+	promoter
28	LOC_Os06g22840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13321640	13323037	-	promoter
28	LOC_Os11g44650	hypothetical protein	gene	hypothetical protein	chr11	26528141	26529412	+	promoter
28	LOC_Os09g20800	hypothetical protein	gene	hypothetical protein	chr9	12527112	12528106	-	promoter
28	LOC_Os02g26120	hypothetical protein	gene	hypothetical protein	chr2	15340359	15342921	+	promoter
28	LOC_Os11g42340	hypothetical protein	gene	hypothetical protein	chr11	25025036	25025458	+	promoter
28	LOC_Os08g31450	MBTB28 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	gene	MBTB28 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	chr8	19448516	19449346	-	promoter
28	LOC_Os10g15050	hypothetical protein	gene	hypothetical protein	chr10	7897294	7897674	+	promoter,downstream
28	LOC_Os09g03250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1561898	1562991	+	promoter,downstream
28	LOC_Os07g09550	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	5054286	5056190	+	promoter
28	LOC_Os02g31960	ATP/GTP binding protein, putative, expressed	gene	ATP/GTP binding protein, putative, expressed	chr2	18884051	18891149	-	promoter,downstream
28	LOC_Os04g31310	hypothetical protein	gene	hypothetical protein	chr4	18560588	18562184	+	promoter,downstream
28	LOC_Os12g10160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5370262	5371146	-	promoter
28	LOC_Os02g29330	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	17414731	17419698	-	promoter
28	LOC_Os12g28679	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16941191	16941769	+	promoter
28	LOC_Os04g21010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11808129	11808621	+	promoter,downstream
28	LOC_Os01g35520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19653479	19654153	-	promoter,downstream
28	LOC_Os07g17100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10050649	10051641	-	promoter,downstream
28	LOC_Os03g35960	hypothetical protein	gene	hypothetical protein	chr3	19948148	19948486	-	promoter
28	LOC_Os04g38160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22524533	22525674	-	promoter,downstream
28	LOC_Os08g23070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13887768	13894493	+	promoter,downstream
28	LOC_Os02g22050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13112205	13114807	-	promoter
28	LOC_Os07g37910	hypothetical protein	gene	hypothetical protein	chr7	22747439	22749673	-	promoter
28	LOC_Os01g23020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	12949344	12956073	+	promoter,downstream
28	LOC_Os04g41880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	24636889	24638154	-	promoter,downstream
28	LOC_Os09g12940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7457405	7464079	-	promoter,downstream
28	LOC_Os07g14800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8446331	8452549	-	promoter
28	LOC_Os07g28230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16485555	16488179	+	promoter,downstream
28	LOC_Os04g05780	hypothetical protein	gene	hypothetical protein	chr4	2961795	2964128	-	promoter
28	LOC_Os08g25010	TBC domain containing protein, expressed	gene	TBC domain containing protein, expressed	chr8	15160555	15164285	-	promoter
28	LOC_Os08g22852	expressed protein	gene	expressed protein	chr8	13736087	13737705	+	promoter
28	LOC_Os02g20230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	11912779	11913372	-	promoter
28	LOC_Os09g23490	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13959299	13962604	-	promoter
28	LOC_Os01g23210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13047392	13052872	+	promoter
28	LOC_Os02g38560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	23305152	23306879	+	promoter
28	LOC_Os10g31010	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr10	16116843	16117487	-	promoter,downstream
28	LOC_Os04g09820	hypothetical protein	gene	hypothetical protein	chr4	5269732	5269941	-	promoter,downstream
28	LOC_Os06g36510	hypothetical protein	gene	hypothetical protein	chr6	21442597	21444965	-	promoter
28	LOC_Os06g07450	F-box protein interaction domain containing protein	gene	F-box protein interaction domain containing protein	chr6	3579485	3580357	+	promoter
28	LOC_Os12g04960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	2139895	2142972	-	promoter
28	LOC_Os01g23219	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13060867	13061169	-	promoter,downstream
28	LOC_Os05g10360	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	5650423	5650650	+	promoter
28	LOC_Os08g15590	Leucine rich repeat N-terminal domain containing protein, putative	gene	Leucine rich repeat N-terminal domain containing protein, putative	chr8	9474623	9480070	-	promoter
28	LOC_Os01g18990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	10731588	10733543	+	promoter
28	LOC_Os05g25340	hypothetical protein	gene	hypothetical protein	chr5	14657042	14657809	+	promoter
28	LOC_Os01g50600	hypothetical protein	gene	hypothetical protein	chr1	29048436	29048989	+	promoter
28	LOC_Os06g29160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16636474	16638467	+	promoter
28	LOC_Os12g23510	hypothetical protein	gene	hypothetical protein	chr12	13290225	13291355	-	promoter,downstream
28	LOC_Os11g43370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25709840	25715941	+	promoter,downstream
28	LOC_Os04g06440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3370746	3371708	+	promoter
28	LOC_Os04g40230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	23747559	23748825	+	promoter
28	LOC_Os06g15190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8605070	8607444	-	promoter,downstream
28	LOC_Os11g20130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11623244	11623696	-	promoter,downstream
28	LOC_Os09g09040	hypothetical protein	gene	hypothetical protein	chr9	4812300	4812923	-	promoter,downstream
28	LOC_Os01g21542	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12051598	12052050	-	promoter,downstream
28	LOC_Os01g23190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13031425	13032270	+	promoter,downstream
28	LOC_Os09g15050	ent-kaurene synthase A, chloroplast precursor, putative, expressed	gene	ent-kaurene synthase A, chloroplast precursor, putative, expressed	chr9	9095554	9100313	+	promoter
28	LOC_Os08g14310	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	8569907	8573656	+	promoter
28	LOC_Os03g05900	expressed protein	gene	expressed protein	chr3	2957308	2959612	+	promoter
28	LOC_Os12g12420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6840295	6841182	-	promoter
28	LOC_Os01g25700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	14566195	14569222	-	promoter,downstream
28	LOC_Os05g31090	hypothetical protein	gene	hypothetical protein	chr5	18007997	18008740	+	promoter
28	LOC_Os09g17510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10708899	10709978	-	promoter,downstream
28	LOC_Os11g37810	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	21928008	21928547	+	promoter
28	LOC_Os08g33510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	20912021	20915719	+	promoter
28	LOC_Os07g34090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20376815	20381729	+	promoter
28	LOC_Os04g15980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8675027	8678537	+	promoter,downstream
28	LOC_Os08g29010	expressed protein	gene	expressed protein	chr8	17754291	17755636	+	promoter,downstream
28	LOC_Os12g34050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20532542	20533825	-	promoter,downstream
28	LOC_Os04g07410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	3938715	3939464	+	promoter,downstream
28	LOC_Os05g25280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14617264	14620111	+	promoter
28	LOC_Os06g34150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19891660	19894846	-	promoter
28	LOC_Os09g12080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6817035	6819807	-	promoter
28	LOC_Os06g28040	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	15909858	15911273	+	promoter
28	LOC_Os12g27370	expressed protein	gene	expressed protein	chr12	16089577	16100120	+	promoter
28	LOC_Os09g26750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16245598	16246799	-	promoter,downstream
28	LOC_Os05g17710	hypothetical protein	gene	hypothetical protein	chr5	10186150	10186500	-	promoter,downstream
28	LOC_Os01g49430	DnaK family protein, putative, expressed	gene	DnaK family protein, putative, expressed	chr1	28424770	28426517	-	promoter
28	LOC_Os06g32410	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	18858461	18858892	+	promoter,downstream
28	LOC_Os02g52110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31887021	31890162	-	promoter
28	LOC_Os09g04830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2571804	2575935	-	promoter
28	LOC_Os02g23830	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13787317	13787798	+	promoter,downstream
28	LOC_Os04g06429	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	3386197	3388181	-	promoter,downstream
28	LOC_Os08g12630	hypothetical protein	gene	hypothetical protein	chr8	7469730	7470765	-	promoter
28	LOC_Os07g19210	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr7	11379994	11382796	-	promoter
28	LOC_Os09g17960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10986601	10988460	-	promoter
28	LOC_Os04g13520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7535399	7536481	-	promoter,downstream
28	LOC_Os05g14790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8395856	8399758	-	promoter,downstream
28	LOC_Os09g16750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10245898	10246495	-	promoter
28	LOC_Os02g19840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	11626565	11630843	-	promoter,downstream
28	LOC_Os11g32670	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr11	18826100	18826622	-	promoter
28	LOC_Os09g15930	hypothetical protein	gene	hypothetical protein	chr9	9724415	9724741	-	promoter,downstream
28	LOC_Os08g03670	galactosyltransferase family protein, putative, expressed	gene	galactosyltransferase family protein, putative, expressed	chr8	1743495	1748166	+	promoter
28	LOC_Os04g11956	hypothetical protein	gene	hypothetical protein	chr4	6553599	6554317	-	promoter
28	LOC_Os12g13490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7571977	7574844	+	promoter,downstream
28	LOC_Os08g13300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7901670	7906774	+	promoter
28	LOC_Os02g28650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16943343	16947042	+	promoter
28	LOC_Os05g43410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25176704	25182858	+	promoter
28	LOC_Os01g23430	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13163352	13168179	-	promoter
28	LOC_Os06g22170	hypothetical protein	gene	hypothetical protein	chr6	12864625	12865886	-	promoter,downstream
28	LOC_Os03g23890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13559070	13559618	-	promoter,downstream
28	LOC_Os05g07109	unknown	gene	unknown	chr5	3752034	3754079	-	promoter
28	LOC_Os02g30000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17818280	17819395	-	promoter,downstream
28	LOC_Os06g24520	hypothetical protein	gene	hypothetical protein	chr6	14370761	14371030	+	promoter
28	LOC_Os10g24800	hypothetical protein	gene	hypothetical protein	chr10	12682725	12683401	+	promoter
28	LOC_Os10g16770	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	8283477	8284118	-	promoter,downstream
28	LOC_Os02g18610	hypothetical protein	gene	hypothetical protein	chr2	10849474	10850435	-	promoter
28	LOC_Os07g36040	strictosidine synthase 1 precursor, putative	gene	strictosidine synthase 1 precursor, putative	chr7	21557790	21558536	+	promoter
28	LOC_Os07g29910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17602620	17604094	+	promoter,downstream
28	LOC_Os02g22084	expressed protein	gene	expressed protein	chr2	13137865	13141339	+	promoter
28	LOC_Os01g08060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	3902490	3903910	+	promoter
28	LOC_Os01g38320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	21493216	21494363	+	promoter
28	LOC_Os06g24100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14102956	14105799	+	promoter
28	LOC_Os01g37750	glutathione S-transferase, putative, expressed	gene	glutathione S-transferase, putative, expressed	chr1	21113692	21114746	-	promoter
28	LOC_Os10g20759	unknown	gene	unknown	chr10	10454521	10454974	-	promoter
28	LOC_Os04g29450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17337516	17341481	-	promoter
28	LOC_Os01g10780	hypothetical protein	gene	hypothetical protein	chr1	5758818	5759234	-	promoter
28	LOC_Os02g14000	actin-related protein 2/3 complex subunit 3, putative, expressed	gene	actin-related protein 2/3 complex subunit 3, putative, expressed	chr2	7643702	7646134	+	promoter
28	LOC_Os07g24250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13789903	13791656	-	promoter
28	LOC_Os12g40680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	25150113	25152317	+	promoter
28	LOC_Os10g27110	expressed protein	gene	expressed protein	chr10	14217761	14219897	-	promoter
28	LOC_Os01g41700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	23600809	23604042	-	promoter
28	LOC_Os05g17450	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10018535	10019884	+	promoter
28	LOC_Os04g19610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10911925	10916492	-	promoter,downstream
28	LOC_Os12g28700	unknown	gene	unknown	chr12	16952779	16953606	+	promoter
28	LOC_Os08g45270	hypothetical protein	gene	hypothetical protein	chr8	28432653	28433060	+	promoter
28	LOC_Os05g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12791065	12791793	+	promoter
28	LOC_Os09g07100	hypothetical protein	gene	hypothetical protein	chr9	3445667	3446026	-	promoter,downstream
28	LOC_Os02g47270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	28838828	28843028	-	promoter
28	LOC_Os04g27180	hypothetical protein	gene	hypothetical protein	chr4	15881485	15881748	+	promoter,downstream
28	LOC_Os12g43179	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	26778901	26784854	-	downstream
28	LOC_Os09g04390	hypothetical protein	gene	hypothetical protein	chr9	2322405	2322656	+	downstream
28	LOC_Os02g20710	hypothetical protein	gene	hypothetical protein	chr2	12211281	12211984	+	downstream
28	LOC_Os09g17780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10879282	10880268	-	downstream
28	LOC_Os03g36960	expressed protein	gene	expressed protein	chr3	20499828	20500437	-	downstream
28	LOC_Os11g12860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	7292019	7293303	+	downstream
28	LOC_Os11g01960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	513988	515571	-	downstream
28	LOC_Os09g10490	unknown	gene	unknown	chr9	5729148	5730289	+	downstream
28	LOC_Os04g38070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22471117	22477348	+	downstream
28	LOC_Os04g10720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	5821914	5823094	-	downstream
28	LOC_Os09g23580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14012383	14012973	-	downstream
28	LOC_Os01g18550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10450818	10453410	-	downstream
28	LOC_Os06g45160	pollen allergen, putative, expressed	gene	pollen allergen, putative, expressed	chr6	27305729	27306412	-	downstream
28	LOC_Os06g33000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19207856	19210951	+	downstream
28	LOC_Os07g14390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8209279	8212574	+	downstream
28	LOC_Os02g20630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12155721	12158217	-	downstream
28	LOC_Os02g01570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	321074	327184	+	downstream
28	LOC_Os01g20990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11719362	11722707	+	downstream
28	LOC_Os04g08010	hypothetical protein	gene	hypothetical protein	chr4	4266303	4266620	+	downstream
28	LOC_Os03g39930	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	22192183	22194144	-	downstream
28	LOC_Os01g51330	expressed protein	gene	expressed protein	chr1	29520032	29522231	-	downstream
28	LOC_Os02g33760	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	20136469	20138777	+	downstream
28	LOC_Os11g42710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25257896	25263254	+	downstream
28	LOC_Os08g27590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16817627	16820902	+	downstream
28	LOC_Os03g52730	magnesium-dependent phosphatase 1, putative, expressed	gene	magnesium-dependent phosphatase 1, putative, expressed	chr3	30221260	30223294	-	downstream
28	LOC_Os04g32780	hypothetical protein	gene	hypothetical protein	chr4	19601259	19601985	+	downstream
28	LOC_Os01g22249	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr1	12508566	12518229	+	downstream
28	LOC_Os05g45590	hexokinase, putative, expressed	gene	hexokinase, putative, expressed	chr5	26355984	26359919	-	downstream
28	LOC_Os10g16740	hypothetical protein	gene	hypothetical protein	chr10	8268698	8269534	+	downstream
28	LOC_Os04g17240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9441996	9448474	+	downstream
28	LOC_Os04g02250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	777798	781359	-	downstream
28	LOC_Os05g33300	tat pathway signal sequence family protein, expressed	gene	tat pathway signal sequence family protein, expressed	chr5	19451786	19454906	+	downstream
28	LOC_Os11g42750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25280055	25281431	-	downstream
28	LOC_Os02g38450	hypothetical protein	gene	hypothetical protein	chr2	23240648	23241168	+	downstream
28	LOC_Os11g19110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10890889	10898438	+	downstream
28	LOC_Os07g16780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	9847154	9849058	+	downstream
28	LOC_Os05g25410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	14720290	14720914	-	downstream
28	LOC_Os01g27150	cullin, putative, expressed	gene	cullin, putative, expressed	chr1	15129831	15138578	-	downstream
28	LOC_Os02g49380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30163597	30166399	+	downstream
28	LOC_Os11g33942	plant protein of unknown function domain containing protein, expressed	gene	plant protein of unknown function domain containing protein, expressed	chr11	19364373	19365218	+	downstream
28	LOC_Os06g22080	diacylglycerol O-acyltransferase, putative, expressed	gene	diacylglycerol O-acyltransferase, putative, expressed	chr6	12808567	12811496	+	downstream
28	LOC_Os11g31490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17934262	17936688	-	downstream
28	LOC_Os01g50622	DNA-binding protein DSP1, putative, expressed	gene	DNA-binding protein DSP1, putative, expressed	chr1	29071721	29075299	-	downstream
28	LOC_Os08g10450	nucleoside transporter, putative, expressed	gene	nucleoside transporter, putative, expressed	chr8	6141130	6143423	-	downstream
28	LOC_Os12g28150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16616434	16620306	+	downstream
28	LOC_Os07g27000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15625802	15630692	+	downstream
28	LOC_Os05g19690	hypothetical protein	gene	hypothetical protein	chr5	11481505	11482238	-	downstream
28	LOC_Os10g08680	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	4725672	4730518	+	downstream
28	LOC_Os01g32480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17807813	17808208	-	downstream
28	LOC_Os05g16255	transmembrane protein 167 precursor, putative, expressed	gene	transmembrane protein 167 precursor, putative, expressed	chr5	9194955	9198243	+	downstream
28	LOC_Os04g44370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26083530	26089364	-	downstream
28	LOC_Os01g36480	hypothetical protein	gene	hypothetical protein	chr1	20248201	20248983	-	downstream
28	LOC_Os07g10280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5514567	5514821	-	downstream
28	LOC_Os05g40750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23825577	23827133	-	downstream
28	LOC_Os01g60560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	35015259	35016804	+	downstream
28	LOC_Os12g11590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6283496	6286084	+	downstream
28	LOC_Os08g06580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	3713905	3716982	-	downstream
28	LOC_Os06g42940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25799398	25801231	+	downstream
28	LOC_Os06g06650	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	3120706	3121721	-	downstream
28	LOC_Os10g18220	GHMP kinases ATP-binding protein, putative, expressed	gene	GHMP kinases ATP-binding protein, putative, expressed	chr10	9185065	9190173	+	downstream
28	LOC_Os12g39180	natural resistance-associated macrophage protein, putative, expressed	gene	natural resistance-associated macrophage protein, putative, expressed	chr12	24086315	24090178	-	downstream
28	LOC_Os12g09800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5190054	5194945	+	downstream
28	LOC_Os05g51900	expressed protein	gene	expressed protein	chr5	29722496	29723087	-	downstream
28	LOC_Os01g14690	Lg106, putative, expressed	gene	Lg106, putative, expressed	chr1	8211421	8214161	-	downstream
28	LOC_Os12g05730	bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed	gene	bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed	chr12	2642977	2644316	+	downstream
28	LOC_Os02g46010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	28024633	28027046	-	downstream
28	LOC_Os03g38010	nuf2 family protein, expressed	gene	nuf2 family protein, expressed	chr3	21100638	21104522	-	downstream
28	LOC_Os12g13470	hypothetical protein	gene	hypothetical protein	chr12	7559304	7560177	-	downstream
28	LOC_Os05g17690	hypothetical protein	gene	hypothetical protein	chr5	10178804	10179326	-	downstream
28	LOC_Os04g20730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11615496	11616221	-	downstream
28	LOC_Os02g37720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22761365	22764697	+	downstream
28	LOC_Os05g22440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12680647	12684385	-	downstream
28	LOC_Os11g36100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20758680	20759102	+	downstream
28	LOC_Os12g37220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22802394	22805725	+	downstream
28	LOC_Os05g27370	hypothetical protein	gene	hypothetical protein	chr5	15860724	15861484	+	downstream
28	LOC_Os02g30974	expressed protein	gene	expressed protein	chr2	18495334	18503763	-	downstream
28	LOC_Os12g27630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16260011	16263680	-	downstream
28	LOC_Os10g22920	Leucine rich repeat N-terminal domain containing protein, putative	gene	Leucine rich repeat N-terminal domain containing protein, putative	chr10	11836684	11838681	+	downstream
28	LOC_Os03g55680	expressed protein	gene	expressed protein	chr3	31690560	31691827	-	downstream
28	LOC_Os03g61860	hypothetical protein	gene	hypothetical protein	chr3	35065013	35067511	+	downstream
28	LOC_Os01g27940	cyclin-L1-1, putative, expressed	gene	cyclin-L1-1, putative, expressed	chr1	15617195	15623540	-	downstream
28	LOC_Os07g08490	hypothetical protein	gene	hypothetical protein	chr7	4376493	4376933	+	downstream
28	LOC_Os10g37459	hypothetical protein	gene	hypothetical protein	chr10	19978284	19978780	+	downstream
28	LOC_Os02g19020	hypothetical protein	gene	hypothetical protein	chr2	11109192	11109682	+	downstream
28	LOC_Os11g36290	hypothetical protein	gene	hypothetical protein	chr11	20905539	20906328	+	downstream
28	LOC_Os05g13580	OsCML18 - Calmodulin-related calcium sensor protein, expressed	gene	OsCML18 - Calmodulin-related calcium sensor protein, expressed	chr5	7533575	7534605	-	downstream
28	LOC_Os05g33554	methyl-binding domain protein MBD, putative, expressed	gene	methyl-binding domain protein MBD, putative, expressed	chr5	19642840	19644916	-	downstream
28	LOC_Os01g18510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	10412158	10414498	+	downstream
28	LOC_Os10g07588	hypothetical protein	gene	hypothetical protein	chr10	4164735	4165037	+	downstream
28	LOC_Os06g34990	cytochrome P450 71A6, putative	gene	cytochrome P450 71A6, putative	chr6	20348103	20348567	-	downstream
28	LOC_Os08g28610	hypothetical protein	gene	hypothetical protein	chr8	17476700	17479776	-	downstream
28	LOC_Os04g17280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9464955	9467945	-	downstream
28	LOC_Os02g43380	hypothetical protein	gene	hypothetical protein	chr2	26170530	26170868	-	downstream
28	LOC_Os11g29440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16623830	16625275	-	downstream
28	LOC_Os02g07630	copper-transporting ATPase, putative, expressed	gene	copper-transporting ATPase, putative, expressed	chr2	3950375	3955896	-	downstream
28	LOC_Os02g25420	unknown	gene	unknown	chr2	14830012	14830573	+	downstream
28	LOC_Os09g28250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17153074	17153601	-	downstream
28	LOC_Os09g02010	hypothetical protein	gene	hypothetical protein	chr9	695905	699837	+	downstream
28	LOC_Os04g20430	hypothetical protein	gene	hypothetical protein	chr4	11423621	11424430	+	downstream
28	LOC_Os02g51200	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr2	31322377	31328273	-	downstream
28	LOC_Os04g34870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21004116	21004825	+	downstream
28	LOC_Os07g22000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12301240	12309919	-	downstream
28	LOC_Os08g25130	enhancer of polycomb, putative, expressed	gene	enhancer of polycomb, putative, expressed	chr8	15253314	15264729	-	downstream
28	LOC_Os10g15160	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	7964595	7964903	+	downstream
28	LOC_Os11g03060	SNF7 domain containing protein, putative, expressed	gene	SNF7 domain containing protein, putative, expressed	chr11	1077105	1081413	-	downstream
28	LOC_Os03g36264	unknown	gene	unknown	chr3	20113342	20113677	+	downstream
28	LOC_Os02g24960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	14466045	14467124	+	downstream
28	LOC_Os09g02880	hypothetical protein	gene	hypothetical protein	chr9	1351117	1352234	+	downstream
28	LOC_Os12g24390	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	13911270	13913070	+	downstream
28	LOC_Os06g15930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9061012	9063654	-	downstream
28	LOC_Os03g31254	hypothetical protein	gene	hypothetical protein	chr3	17801215	17801517	-	downstream
28	LOC_Os12g23780	expressed protein	gene	expressed protein	chr12	13509420	13510789	-	downstream
28	LOC_Os07g16340	unknown	gene	unknown	chr7	9538064	9540925	-	downstream
28	LOC_Os10g19970	expressed protein	gene	expressed protein	chr10	9951362	9952175	+	downstream
28	LOC_Os04g49040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	29045410	29048452	-	downstream
28	LOC_Os11g19320	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	11065878	11066258	-	downstream
28	LOC_Os04g04520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2157422	2158782	-	downstream
28	LOC_Os12g31870	hypothetical protein	gene	hypothetical protein	chr12	19165110	19167503	-	downstream
28	LOC_Os01g09590	myb-like DNA-binding domain containing protein, putative, expressed	gene	myb-like DNA-binding domain containing protein, putative, expressed	chr1	4916884	4918224	-	downstream
28	LOC_Os10g05630	hypothetical protein	gene	hypothetical protein	chr10	2812556	2812810	-	downstream
28	LOC_Os07g45800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	27336605	27336925	-	downstream
28	LOC_Os01g32810	hypothetical protein	gene	hypothetical protein	chr1	18003732	18004082	+	downstream
28	LOC_Os12g17670	hypothetical protein	gene	hypothetical protein	chr12	10117386	10118755	-	downstream
28	LOC_Os02g39310	hypothetical protein	gene	hypothetical protein	chr2	23732381	23732650	-	downstream
28	LOC_Os09g06140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2875363	2876549	+	downstream
28	LOC_Os08g37480	mediator of RNA polymerase II transcription subunit 22, putative, expressed	gene	mediator of RNA polymerase II transcription subunit 22, putative, expressed	chr8	23738659	23744313	-	downstream
28	LOC_Os10g06330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3256805	3261319	+	downstream
28	LOC_Os02g33210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19736765	19738739	-	downstream
28	LOC_Os02g04755	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	2167665	2170656	-	downstream
28	LOC_Os12g40240	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	24872172	24873881	+	downstream
28	LOC_Os08g10680	hypothetical protein	gene	hypothetical protein	chr8	6293085	6293372	-	downstream
28	LOC_Os03g15130	hypothetical protein	gene	hypothetical protein	chr3	8264284	8264592	-	downstream
28	LOC_Os05g10810	O-acyltransferase, putative, expressed	gene	O-acyltransferase, putative, expressed	chr5	5971873	5978672	+	downstream
28	LOC_Os02g20060	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	11814272	11814752	+	downstream
28	LOC_Os07g39370	hypothetical protein	gene	hypothetical protein	chr7	23587915	23588888	+	downstream
28	LOC_Os03g28190	dirigent, putative, expressed	gene	dirigent, putative, expressed	chr3	16226305	16226838	-	downstream
28	LOC_Os03g10990	retinoblastoma-binding protein-like, putative, expressed	gene	retinoblastoma-binding protein-like, putative, expressed	chr3	5645147	5649212	-	downstream
28	LOC_Os03g39190	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	21763453	21764781	+	downstream
28	LOC_Os12g13174	expressed protein	gene	expressed protein	chr12	7338283	7342241	-	downstream
28	LOC_Os03g42660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	23763236	23766299	-	downstream
28	LOC_Os12g18910	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	10972867	10975770	+	downstream
28	LOC_Os08g23710	ribosomal protein L7Ae, putative, expressed	gene	ribosomal protein L7Ae, putative, expressed	chr8	14337745	14340226	-	downstream
28	LOC_Os05g28880	hypothetical protein	gene	hypothetical protein	chr5	16873355	16873603	+	downstream
28	LOC_Os07g44380	dirigent, putative, expressed	gene	dirigent, putative, expressed	chr7	26519041	26519696	+	downstream
28	LOC_Os06g37310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22030571	22033705	-	downstream
28	LOC_Os03g43150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	24074366	24074722	-	downstream
28	LOC_Os02g17220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	9871117	9871782	-	downstream
28	LOC_Os10g08140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4413034	4413936	+	downstream
28	LOC_Os10g38550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20508842	20509414	+	downstream
28	LOC_Os02g39460	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	23796208	23796775	-	downstream
28	LOC_Os03g47702	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27023585	27036021	+	downstream
28	LOC_Os10g10190	ATP-binding region, ATPase-like domain containing protein, expressed	gene	ATP-binding region, ATPase-like domain containing protein, expressed	chr10	5611556	5626984	-	downstream
28	LOC_Os11g06710	hypothetical protein	gene	hypothetical protein	chr11	3265561	3266771	-	downstream
28	LOC_Os01g41470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	23477934	23479179	-	downstream
28	LOC_Os04g08430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4524748	4528039	+	downstream
28	LOC_Os05g06530	expressed protein	gene	expressed protein	chr5	3361161	3364553	+	downstream
28	LOC_Os11g01270	mitochondrial substrate carrier family protein, putative, expressed	gene	mitochondrial substrate carrier family protein, putative, expressed	chr11	143166	148106	-	downstream
28	LOC_Os08g06560	ribosomal protein L13, putative	gene	ribosomal protein L13, putative	chr8	3701646	3703260	-	downstream
28	LOC_Os02g19240	hypothetical protein	gene	hypothetical protein	chr2	11227245	11227445	+	downstream
28	LOC_Os10g33170	POT domain containing peptide transporter, putative, expressed	gene	POT domain containing peptide transporter, putative, expressed	chr10	17303217	17307814	+	downstream
28	LOC_Os12g22640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12788142	12788486	+	downstream
28	LOC_Os10g04500	hypothetical protein	gene	hypothetical protein	chr10	2132146	2132481	-	downstream
28	LOC_Os05g34420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	20334659	20337085	-	downstream
28	LOC_Os09g09090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4858104	4861686	-	downstream
28	LOC_Os04g30740	mitochondrial import inner membrane translocase subunit Tim17, putative, expressed	gene	mitochondrial import inner membrane translocase subunit Tim17, putative, expressed	chr4	18199647	18203601	-	downstream
28	LOC_Os05g28680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16760931	16766645	-	downstream
28	LOC_Os01g18980	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10723198	10723515	-	downstream
28	LOC_Os06g50800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	30739031	30742267	-	downstream
28	LOC_Os09g32380	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr9	19335121	19339062	-	downstream
28	LOC_Os11g34580	hypothetical protein	gene	hypothetical protein	chr11	19775463	19775732	-	downstream
28	LOC_Os08g23189	hypothetical protein	gene	hypothetical protein	chr8	13987189	13987407	+	downstream
28	LOC_Os05g30110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17367691	17368128	-	downstream
28	LOC_Os07g15440	alanyl-tRNA synthetase family protein, expressed	gene	alanyl-tRNA synthetase family protein, expressed	chr7	8929415	8942864	-	downstream
28	LOC_Os07g49060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29371727	29372107	+	downstream
28	LOC_Os07g20780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12018427	12022342	+	downstream
28	LOC_Os02g48390	phosphoribosyl transferase, putative, expressed	gene	phosphoribosyl transferase, putative, expressed	chr2	29619587	29622249	+	downstream
28	LOC_Os07g18000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10651496	10653744	-	downstream
28	LOC_Os02g28739	unknown	gene	unknown	chr2	17000114	17000538	-	downstream
28	LOC_Os05g10500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5710866	5711096	+	downstream
28	LOC_Os10g28094	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	14521678	14523949	-	downstream
28	LOC_Os08g06070	ELF7, putative, expressed	gene	ELF7, putative, expressed	chr8	3311935	3317039	-	downstream
28	LOC_Os05g15640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	8851284	8851996	+	downstream
28	LOC_Os07g28644	expressed protein	gene	expressed protein	chr7	16765304	16768647	+	downstream
28	LOC_Os09g08820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4650098	4651737	+	downstream
28	LOC_Os08g30100	1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed	gene	1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed	chr8	18506292	18507531	-	downstream
28	LOC_Os05g22460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12692038	12697016	+	downstream
28	LOC_Os04g20900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11719908	11723282	+	downstream
28	LOC_Os06g40818	aspartic proteinase, putative, expressed	gene	aspartic proteinase, putative, expressed	chr6	24347626	24353102	+	downstream
28	LOC_Os09g27760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	16889521	16892468	+	downstream
28	LOC_Os05g20400	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11965773	11971934	-	downstream
28	LOC_Os01g35990	RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed	gene	RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed	chr1	19910178	19913235	-	downstream
28	LOC_Os05g03560	hypothetical protein	gene	hypothetical protein	chr5	1511033	1511359	+	downstream
28	LOC_Os04g19770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11032677	11035608	+	downstream
28	LOC_Os02g26480	OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed	chr2	15543428	15552430	-	downstream
28	LOC_Os11g24484	estradiol 17-beta-dehydrogenase 12, putative, expressed	gene	estradiol 17-beta-dehydrogenase 12, putative, expressed	chr11	13492722	13500811	+	downstream
28	LOC_Os05g46630	expressed protein	gene	expressed protein	chr5	26933090	26936528	-	downstream
28	LOC_Os06g16919	expressed protein	gene	expressed protein	chr6	9804235	9808124	-	downstream
28	LOC_Os07g10540	peptidase, M24 family protein, putative, expressed	gene	peptidase, M24 family protein, putative, expressed	chr7	5690880	5698884	-	downstream
28	LOC_Os07g11850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6553306	6555881	+	downstream
28	LOC_Os03g40960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	22765224	22766357	+	downstream
28	LOC_Os12g17040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9747107	9748988	+	downstream
28	LOC_Os05g27680	expressed protein	gene	expressed protein	chr5	16069788	16070692	-	downstream
28	LOC_Os09g22370	hypothetical protein	gene	hypothetical protein	chr9	13518939	13521063	-	downstream
28	LOC_Os10g24870	hypothetical protein	gene	hypothetical protein	chr10	12715340	12716890	-	downstream
28	LOC_Os11g25240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13918325	13920552	-	downstream
28	LOC_Os07g48390	proline-rich protein, putative, expressed	gene	proline-rich protein, putative, expressed	chr7	28918585	28920072	+	downstream
28	LOC_Os04g19510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10859220	10859528	+	downstream
28	LOC_Os02g32170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	18996130	18998481	+	downstream
28	LOC_Os01g58160	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	33632176	33634299	+	downstream
28	LOC_Os12g37270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22833919	22836477	-	downstream
28	LOC_Os10g21440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10909212	10909859	+	downstream
28	LOC_Os01g07850	glyoxalase family protein, putative, expressed	gene	glyoxalase family protein, putative, expressed	chr1	3778634	3781004	+	downstream
28	LOC_Os05g04860	agenet domain containing protein, putative, expressed	gene	agenet domain containing protein, putative, expressed	chr5	2334686	2339639	-	downstream
28	LOC_Os01g37890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	21210421	21216576	-	downstream
28	LOC_Os01g50590	cytochrome P450, putative	gene	cytochrome P450, putative	chr1	29044004	29046949	+	downstream
28	LOC_Os08g39570	Leucine Rich Repeat family protein, expressed	gene	Leucine Rich Repeat family protein, expressed	chr8	25029126	25036724	+	downstream
28	LOC_Os06g17160	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9947509	9949531	-	downstream
28	LOC_Os11g30450	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	17241126	17241386	+	downstream
28	LOC_Os11g23200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12890679	12895014	-	downstream
28	LOC_Os07g09240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	4839250	4844631	-	downstream
28	LOC_Os07g11030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	6071267	6076231	-	downstream
28	LOC_Os12g10010	hypothetical protein	gene	hypothetical protein	chr12	5300720	5302470	-	downstream
28	LOC_Os12g11670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6330437	6333049	+	downstream
28	LOC_Os06g14850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	8443359	8445473	+	downstream
28	LOC_Os11g15710	hypothetical protein	gene	hypothetical protein	chr11	8897029	8897319	+	downstream
28	LOC_Os10g18770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9472721	9475477	-	downstream
28	LOC_Os08g07600	expressed protein	gene	expressed protein	chr8	4267286	4267978	+	downstream
28	LOC_Os09g10870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	5953108	5957902	+	downstream
28	LOC_Os09g04590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2445629	2446267	-	downstream
28	LOC_Os07g16290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9507025	9509644	+	downstream
28	LOC_Os07g20220	hypothetical protein	gene	hypothetical protein	chr7	11665390	11665770	-	downstream
28	LOC_Os06g45270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	27354859	27361014	-	downstream
28	LOC_Os10g27160	hypothetical protein	gene	hypothetical protein	chr10	14241916	14242320	+	downstream
28	LOC_Os10g08300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4500814	4503859	+	downstream
28	LOC_Os01g27219	unknown	gene	unknown	chr1	15172640	15172785	+	downstream
28	LOC_Os12g23470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13270244	13271714	-	downstream
28	LOC_Os01g41680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23590388	23591762	-	downstream
28	LOC_Os06g32690	hypothetical protein	gene	hypothetical protein	chr6	19009761	19010533	+	downstream
28	LOC_Os01g73356	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	42516992	42517618	-	downstream
28	LOC_Os08g18950	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	11300371	11303613	-	downstream
28	LOC_Os09g13000	hypothetical protein	gene	hypothetical protein	chr9	7506155	7509207	+	downstream
28	LOC_Os05g29820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	17199416	17203059	-	downstream
28	LOC_Os05g01850	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	501364	504223	-	downstream
28	LOC_Os05g23260	OsSigP4 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed	gene	OsSigP4 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed	chr5	13225312	13229199	+	downstream
28	LOC_Os05g28790	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr5	16818979	16819503	+	downstream
28	LOC_Os05g31520	hypothetical protein	gene	hypothetical protein	chr5	18273824	18277190	-	downstream
28	LOC_Os04g03600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1569429	1571828	+	downstream
28	LOC_Os09g37850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	21822765	21824095	-	downstream
28	LOC_Os12g34128	mitochondrial 60S ribosomal protein L16, putative	gene	mitochondrial 60S ribosomal protein L16, putative	chr12	20645730	20646287	+	downstream
28	LOC_Os12g34660	hypothetical protein	gene	hypothetical protein	chr12	21010955	21011527	+	downstream
28	LOC_Os08g45260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	28428134	28430899	-	downstream
28	LOC_Os06g33020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19216753	19221273	+	downstream
28	LOC_Os09g15370	expressed protein	gene	expressed protein	chr9	9398111	9401431	+	downstream
28	LOC_Os06g18720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10612440	10613989	-	downstream
28	LOC_Os03g29150	NAD dependent epimerase/dehydratase family protein, putative, expressed	gene	NAD dependent epimerase/dehydratase family protein, putative, expressed	chr3	16549999	16560075	+	downstream
28	LOC_Os01g56270	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	32407231	32412591	+	downstream
28	LOC_Os09g23060	hypothetical protein	gene	hypothetical protein	chr9	13617990	13619315	+	downstream
28	LOC_Os07g19110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	11313444	11313899	-	downstream
28	LOC_Os10g39070	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr10	20753612	20755748	-	downstream
28	LOC_Os06g34560	zinc finger, C3HC4 type domain containing protein	gene	zinc finger, C3HC4 type domain containing protein	chr6	20097737	20099499	+	downstream
28	LOC_Os10g26349	unknown	gene	unknown	chr10	13592563	13592911	+	downstream
28	LOC_Os03g09990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	5002274	5003968	-	downstream
28	LOC_Os12g26070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15138429	15143628	-	downstream
28	LOC_Os02g49800	eukaryotic aspartyl protease domain containing protein, expressed	gene	eukaryotic aspartyl protease domain containing protein, expressed	chr2	30432013	30435679	-	downstream
28	LOC_Os07g17740	hypothetical protein	gene	hypothetical protein	chr7	10477253	10477849	-	downstream
28	LOC_Os01g29330	expressed protein	gene	expressed protein	chr1	16434830	16435819	+	downstream
28	LOC_Os03g32642	hypothetical protein	gene	hypothetical protein	chr3	18693293	18693749	-	downstream
28	LOC_Os09g01210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	185418	186185	-	downstream
28	LOC_Os02g49750	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	30401399	30401818	-	downstream
28	LOC_Os10g11022	hypothetical protein	gene	hypothetical protein	chr10	6115209	6115746	-	downstream
28	LOC_Os05g05860	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	2934467	2944360	-	downstream
28	LOC_Os02g48920	ubiquitin-conjugating enzyme, putative	gene	ubiquitin-conjugating enzyme, putative	chr2	29915784	29917308	-	downstream
28	LOC_Os11g01690	hypothetical protein	gene	hypothetical protein	chr11	375049	376541	-	downstream
28	LOC_Os01g34390	prenyltransferase, putative, expressed	gene	prenyltransferase, putative, expressed	chr1	18960273	18967960	-	downstream
28	LOC_Os02g18570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10831878	10833756	-	downstream
28	LOC_Os03g27060	hypothetical protein	gene	hypothetical protein	chr3	15490038	15490241	-	downstream
28	LOC_Os11g20500	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr11	11873116	11873499	+	downstream
28	LOC_Os10g01240	VQ domain containing protein, putative, expressed	gene	VQ domain containing protein, putative, expressed	chr10	158717	159240	+	downstream
28	LOC_Os11g41740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24597625	24598113	-	downstream
28	LOC_Os06g32800	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	19077063	19079683	-	downstream
28	LOC_Os02g16120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9170576	9174273	-	downstream
28	LOC_Os07g35120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21034403	21035565	+	downstream
28	LOC_Os07g37110	nucleoside transporter, putative, expressed	gene	nucleoside transporter, putative, expressed	chr7	22235828	22239348	-	downstream
28	LOC_Os08g17880	hypothetical protein	gene	hypothetical protein	chr8	10969566	10970698	-	downstream
28	LOC_Os05g40830	hypothetical protein	gene	hypothetical protein	chr5	23890453	23891451	+	downstream
28	LOC_Os04g48680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28835889	28837841	-	downstream
28	LOC_Os05g14830	hypothetical protein	gene	hypothetical protein	chr5	8430462	8430898	+	downstream
28	LOC_Os07g17860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10569144	10572553	+	downstream
28	LOC_Os12g28410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16788701	16791591	-	downstream
28	LOC_Os05g34140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	20119122	20122647	+	downstream
28	LOC_Os08g23370	hypothetical protein	gene	hypothetical protein	chr8	14126322	14126731	-	downstream
28	LOC_Os11g41410	expressed protein	gene	expressed protein	chr11	24381252	24387811	-	downstream
28	LOC_Os05g34960	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	20703607	20706752	+	downstream
28	LOC_Os02g06570	CAMK_KIN1/SNF1/Nim1_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	gene	CAMK_KIN1/SNF1/Nim1_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	chr2	3283210	3286406	-	downstream
28	LOC_Os10g11600	hypothetical protein	gene	hypothetical protein	chr10	6428438	6428839	+	downstream
28	LOC_Os07g28490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16678474	16680675	+	downstream
28	LOC_Os11g36580	hypothetical protein	gene	hypothetical protein	chr11	21125396	21127523	-	downstream
28	LOC_Os06g43140	GA16396-PA, putative, expressed	gene	GA16396-PA, putative, expressed	chr6	25931432	25934035	+	downstream
28	LOC_Os02g29910	hypothetical protein	gene	hypothetical protein	chr2	17785321	17785560	-	downstream
28	LOC_Os06g18140	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr6	10552310	10554192	+	downstream
28	LOC_Os08g18110	alpha-soluble NSF attachment protein, putative, expressed	gene	alpha-soluble NSF attachment protein, putative, expressed	chr8	11101728	11107281	+	downstream
28	LOC_Os08g29220	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	17909067	17909522	-	downstream
28	LOC_Os03g54930	VIP4, putative	gene	VIP4, putative	chr3	31218400	31224801	-	downstream
28	LOC_Os09g14400	hypothetical protein	gene	hypothetical protein	chr9	8503916	8505015	-	downstream
28	LOC_Os07g46730	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr7	27928317	27932849	-	downstream
28	LOC_Os04g23050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13082250	13082742	+	downstream
28	LOC_Os04g08812	hypothetical protein	gene	hypothetical protein	chr4	4841999	4842717	-	downstream
28	LOC_Os09g17480	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	10691695	10694418	+	downstream
28	LOC_Os05g14650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8335620	8337195	-	downstream
28	LOC_Os10g10770	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	5967577	5971274	-	downstream
28	LOC_Os11g18640	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10513285	10518200	+	downstream
28	LOC_Os12g25150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14435735	14437452	-	downstream
28	LOC_Os05g26090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15113962	15115578	+	downstream
28	LOC_Os01g51730	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	29743027	29743326	+	downstream
28	LOC_Os10g24300	circumsporozoite protein, putative	gene	circumsporozoite protein, putative	chr10	12376931	12377722	+	downstream
28	LOC_Os11g38080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	22115825	22116418	-	downstream
28	LOC_Os12g38510	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr12	23617079	23617923	+	downstream
28	LOC_Os03g45810	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	25865870	25869476	-	downstream
28	LOC_Os11g28710	hypothetical protein	gene	hypothetical protein	chr11	16145055	16145315	-	downstream
28	LOC_Os01g60040	HEAT repeat family protein, putative, expressed	gene	HEAT repeat family protein, putative, expressed	chr1	34704427	34721518	-	downstream
28	LOC_Os11g17240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9598000	9598881	-	downstream
28	LOC_Os02g14929	T-complex protein, putative, expressed	gene	T-complex protein, putative, expressed	chr2	8326082	8343177	-	downstream
28	LOC_Os02g12830	hypothetical protein	gene	hypothetical protein	chr2	6751348	6752533	-	downstream
28	LOC_Os04g11210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	6108713	6111337	+	downstream
28	LOC_Os08g26080	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr8	15862042	15863066	+	downstream
28	LOC_Os01g27449	hypothetical protein	gene	hypothetical protein	chr1	15327842	15331921	-	downstream
28	LOC_Os07g15030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8614546	8618302	+	downstream
28	LOC_Os04g27580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16143153	16143962	-	downstream
28	LOC_Os10g05309	hypothetical protein	gene	hypothetical protein	chr10	2622787	2623170	-	downstream
28	LOC_Os04g43464	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	25530718	25537040	+	downstream
28	LOC_Os06g28840	expressed protein	gene	expressed protein	chr6	16439847	16443416	-	downstream
28	LOC_Os11g19810	PWWP domain containing protein, expressed	gene	PWWP domain containing protein, expressed	chr11	11405817	11410493	-	downstream
28	LOC_Os04g15560	protein kinase, putative	gene	protein kinase, putative	chr4	8458201	8459605	+	downstream
28	LOC_Os09g14540	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr9	8602008	8608483	-	downstream
28	LOC_Os08g28490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	17387049	17389652	+	downstream
28	LOC_Os10g21490	hypothetical protein	gene	hypothetical protein	chr10	10936076	10938670	-	downstream
28	LOC_Os02g49810	hypothetical protein	gene	hypothetical protein	chr2	30436599	30436965	+	downstream
28	LOC_Os06g02990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1098388	1099181	+	downstream
28	LOC_Os07g30260	hypothetical protein	gene	hypothetical protein	chr7	17889163	17889744	-	downstream
28	LOC_Os05g15120	expressed protein	gene	expressed protein	chr5	8580342	8580653	+	downstream
28	LOC_Os05g23630	hypothetical protein	gene	hypothetical protein	chr5	13496861	13497793	+	downstream
28	LOC_Os01g13285	expressed protein	gene	expressed protein	chr1	7413865	7414354	-	downstream
28	LOC_Os05g47910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	27403395	27404366	-	downstream
28	LOC_Os06g22860	hypothetical protein	gene	hypothetical protein	chr6	13334913	13336356	+	downstream
28	LOC_Os04g34630	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr4	20782531	20783885	+	downstream
28	LOC_Os07g06710	tetratricopeptide repeat, putative, expressed	gene	tetratricopeptide repeat, putative, expressed	chr7	3269361	3274945	-	downstream
28	LOC_Os04g10050	expressed protein	gene	expressed protein	chr4	5414945	5415388	-	downstream
28	LOC_Os02g45820	mitochondrial import inner membrane translocase subunit Tim, putative, expressed	gene	mitochondrial import inner membrane translocase subunit Tim, putative, expressed	chr2	27903683	27906198	-	downstream
28	LOC_Os02g39640	expressed protein	gene	expressed protein	chr2	23908574	23910341	+	downstream
28	LOC_Os11g28860	ligA, putative	gene	ligA, putative	chr11	16248943	16249395	-	downstream
28	LOC_Os07g25070	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	14304545	14304902	-	downstream
28	LOC_Os09g10480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	5723945	5725845	-	downstream
28	LOC_Os09g30260	expressed protein	gene	expressed protein	chr9	18426051	18427082	+	downstream
28	LOC_Os06g24260	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	14200365	14200856	-	downstream
28	LOC_Os04g30830	F-box domain containing protein	gene	F-box domain containing protein	chr4	18254241	18256126	+	downstream
28	LOC_Os05g00990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6935	9099	+	downstream
28	LOC_Os12g34569	unknown	gene	unknown	chr12	20923785	20924006	-	downstream
28	LOC_Os02g18230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10581544	10585823	-	downstream
28	LOC_Os01g30970	PMR5, putative, expressed	gene	PMR5, putative, expressed	chr1	16927572	16928674	+	downstream
28	LOC_Os09g11670	hypothetical protein	gene	hypothetical protein	chr9	6509145	6509600	-	downstream
28	LOC_Os05g28340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	16533587	16536356	-	downstream
28	LOC_Os04g15970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	8667197	8667625	-	downstream
28	LOC_Os08g19420	O-methyltransferase, putative, expressed	gene	O-methyltransferase, putative, expressed	chr8	11606395	11607890	+	downstream
28	LOC_Os01g37820	oxidoreductase/ transition metal ion binding protein, putative, expressed	gene	oxidoreductase/ transition metal ion binding protein, putative, expressed	chr1	21150445	21154594	-	downstream
28	LOC_Os03g53930	expressed protein	gene	expressed protein	chr3	30913572	30914793	+	downstream
28	LOC_Os08g12390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7306631	7312710	+	downstream
28	LOC_Os04g01006	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1032	2679	+	downstream
28	LOC_Os09g19990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11965853	11969854	-	downstream
28	LOC_Os04g40880	nucleotide-binding protein 1, putative, expressed	gene	nucleotide-binding protein 1, putative, expressed	chr4	24082746	24085030	-	downstream
28	LOC_Os02g29050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17203880	17205976	+	downstream
28	LOC_Os09g35760	homeobox and START domains containing protein, putative, expressed	gene	homeobox and START domains containing protein, putative, expressed	chr9	20567501	20574416	-	downstream
28	LOC_Os05g28370	expressed protein	gene	expressed protein	chr5	16564554	16568270	-	downstream
28	LOC_Os11g30546	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17308057	17308575	+	downstream
28	LOC_Os02g36180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	21799127	21799579	+	downstream
28	LOC_Os07g45100	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	gene	endonuclease/exonuclease/phosphatase family domain containing protein, expressed	chr7	26917379	26922896	-	downstream
28	LOC_Os04g27230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15917231	15923386	-	downstream
28	LOC_Os12g34720	hypothetical protein	gene	hypothetical protein	chr12	21049439	21051528	+	downstream
28	LOC_Os03g36560	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr3	20262554	20268139	+	downstream
28	LOC_Os05g29010	POLA4 - Putative DNA polymerase alpha complex subunit, expressed	gene	POLA4 - Putative DNA polymerase alpha complex subunit, expressed	chr5	16946137	16951374	-	downstream
28	LOC_Os02g06100	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	3040887	3041680	-	downstream
28	LOC_Os03g31170	inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed	gene	inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed	chr3	17744154	17747343	-	downstream
28	LOC_Os04g06350	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3307723	3308293	+	downstream
28	LOC_Os01g16890	ribosomal protein L7Ae, putative, expressed	gene	ribosomal protein L7Ae, putative, expressed	chr1	9656956	9660255	-	downstream
28	LOC_Os01g64740	hypothetical protein	gene	hypothetical protein	chr1	37560809	37562795	-	downstream
28	LOC_Os06g48909	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29610919	29611350	-	downstream
28	LOC_Os11g04070	60S acidic ribosomal protein P0, putative, expressed	gene	60S acidic ribosomal protein P0, putative, expressed	chr11	1645484	1647854	-	downstream
28	LOC_Os10g03030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1254869	1256298	-	downstream
28	LOC_Os05g32000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	18591096	18592794	+	downstream
28	LOC_Os04g04210	hypothetical protein	gene	hypothetical protein	chr4	1955225	1957285	+	downstream
28	LOC_Os06g28090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15952731	15955990	+	downstream
28	LOC_Os12g21960	hypothetical protein	gene	hypothetical protein	chr12	12358727	12359772	-	downstream
28	LOC_Os12g37000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22645368	22648676	+	downstream
28	LOC_Os11g20140	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	11626869	11627339	-	downstream
28	LOC_Os03g12330	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	6504042	6504482	-	downstream
28	LOC_Os03g45619	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr3	25744019	25758812	-	downstream
28	LOC_Os12g19120	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	11098252	11099511	+	downstream
28	LOC_Os09g11350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6299921	6301195	+	downstream
28	LOC_Os06g37080	L-ascorbate oxidase precursor, putative, expressed	gene	L-ascorbate oxidase precursor, putative, expressed	chr6	21892250	21897267	+	downstream
28	LOC_Os11g44070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	26158292	26160982	-	downstream
28	LOC_Os02g41860	aquaporin protein, putative, expressed	gene	aquaporin protein, putative, expressed	chr2	25156674	25160748	+	downstream
28	LOC_Os10g24100	hypothetical protein	gene	hypothetical protein	chr10	12278145	12282116	-	downstream
28	LOC_Os11g36200	receptor-like protein kinase 2 precursor, putative, expressed	gene	receptor-like protein kinase 2 precursor, putative, expressed	chr11	20831684	20835610	+	downstream
28	LOC_Os01g31830	hypothetical protein	gene	hypothetical protein	chr1	17434728	17435168	-	downstream
28	LOC_Os04g23660	ligA, putative	gene	ligA, putative	chr4	13527033	13527764	-	downstream
28	LOC_Os09g16200	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	9880133	9887172	+	downstream
28	LOC_Os02g12980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	6877381	6882468	+	downstream
28	LOC_Os03g59250	expressed protein	gene	expressed protein	chr3	33730324	33732371	-	downstream
28	LOC_Os04g42150	hypothetical protein	gene	hypothetical protein	chr4	24773518	24774179	+	downstream
28	LOC_Os08g31540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	19500782	19506740	+	downstream
28	LOC_Os05g02840	hypothetical protein	gene	hypothetical protein	chr5	1025742	1027655	+	downstream
28	LOC_Os11g35790	Leucine rich repeat N-terminal domain containing protein, putative	gene	Leucine rich repeat N-terminal domain containing protein, putative	chr11	20543204	20544466	+	downstream
28	LOC_Os08g03940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1873552	1876572	-	downstream
28	LOC_Os05g30560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17644649	17647549	-	downstream
28	LOC_Os10g17970	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9035232	9038506	+	downstream
28	LOC_Os09g27520	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	16727509	16728111	-	downstream
28	LOC_Os06g37640	expressed protein	gene	expressed protein	chr6	22291249	22300033	-	downstream
28	LOC_Os05g33850	UBA/TS-N domain containing protein, expressed	gene	UBA/TS-N domain containing protein, expressed	chr5	19906349	19911025	-	downstream
28	LOC_Os10g30910	transmembrane protein-related, putative, expressed	gene	transmembrane protein-related, putative, expressed	chr10	16050003	16059693	+	downstream
28	LOC_Os04g26600	hypothetical protein	gene	hypothetical protein	chr4	15511056	15511492	+	downstream
28	LOC_Os06g03190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	1201923	1203812	+	downstream
28	LOC_Os03g13630	3-ketoacyl-CoA synthase, putative	gene	3-ketoacyl-CoA synthase, putative	chr3	7370434	7370868	-	downstream
28	LOC_Os08g11100	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	6528003	6528410	-	downstream
28	LOC_Os01g32680	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	17920994	17921684	+	downstream
28	LOC_Os03g20450	expressed protein	gene	expressed protein	chr3	11584018	11589084	+	downstream
28	LOC_Os08g23270	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	14041378	14042964	-	downstream
28	LOC_Os02g52090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	31872022	31877193	-	downstream
28	LOC_Os11g23930	expressed protein	gene	expressed protein	chr11	13096257	13097268	+	downstream
28	LOC_Os01g34630	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr1	19094472	19099112	-	downstream
28	LOC_Os07g28620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16749957	16753653	-	downstream
28	LOC_Os07g12050	hypothetical protein	gene	hypothetical protein	chr7	6728088	6728769	-	downstream
28	LOC_Os10g11590	expressed protein	gene	expressed protein	chr10	6424542	6427554	-	downstream
28	LOC_Os01g31760	acyl-ACP thioesterase, putative	gene	acyl-ACP thioesterase, putative	chr1	17383194	17388544	+	downstream
28	LOC_Os03g25200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	14400660	14404356	-	downstream
28	LOC_Os11g19940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11469209	11471849	-	downstream
28	LOC_Os04g20270	transcriptional regulator Sir2 family protein, putative, expressed	gene	transcriptional regulator Sir2 family protein, putative, expressed	chr4	11306929	11319334	-	downstream
28	LOC_Os04g08530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4614773	4616773	+	downstream
28	LOC_Os04g24650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14138074	14143992	-	downstream
28	LOC_Os03g43730	tesmin/TSO1-like CXC domain containing protein, expressed	gene	tesmin/TSO1-like CXC domain containing protein, expressed	chr3	24453032	24459741	-	downstream
28	LOC_Os02g27389	unknown	gene	unknown	chr2	16141077	16141953	+	downstream
28	LOC_Os05g11190	BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain	gene	BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain	chr5	6316828	6318894	+	downstream
28	LOC_Os09g16790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	10262361	10265405	+	downstream
28	LOC_Os06g44550	hypothetical protein	gene	hypothetical protein	chr6	26909660	26910425	+	downstream
28	LOC_Os01g36766	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	20423625	20426580	-	downstream
28	LOC_Os08g35640	hypothetical protein	gene	hypothetical protein	chr8	22466046	22466574	-	downstream
28	LOC_Os07g43670	ribonuclease T2 family domain containing protein, expressed	gene	ribonuclease T2 family domain containing protein, expressed	chr7	26140475	26141928	+	downstream
28	LOC_Os08g17530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	10728886	10729350	+	downstream
28	LOC_Os12g17210	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	9846227	9848228	+	downstream
28	LOC_Os01g45540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25858092	25858604	+	downstream
28	LOC_Os09g13630	ZOS9-03 - C2H2 zinc finger protein, expressed	gene	ZOS9-03 - C2H2 zinc finger protein, expressed	chr9	7924560	7937161	-	downstream
28	LOC_Os04g05220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2599430	2602033	+	downstream
28	LOC_Os08g07410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4158831	4162136	+	downstream
28	LOC_Os01g45800	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	26015795	26019018	+	downstream
28	LOC_Os02g24940	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	14454786	14457518	-	downstream
28	LOC_Os12g08680	hypothetical protein	gene	hypothetical protein	chr12	4401079	4403491	+	downstream
28	LOC_Os08g40340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25536734	25539448	+	downstream
28	LOC_Os01g33470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18430915	18432410	+	downstream
28	LOC_Os10g33460	alcohol oxidase, putative, expressed	gene	alcohol oxidase, putative, expressed	chr10	17547887	17552415	-	downstream
28	LOC_Os03g20230	aspartic proteinase nepenthesin-1 precursor, putative	gene	aspartic proteinase nepenthesin-1 precursor, putative	chr3	11427675	11428829	+	downstream
28	LOC_Os12g11280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6073580	6074221	+	downstream
28	LOC_Os06g21320	hypothetical protein	gene	hypothetical protein	chr6	12313292	12313507	-	downstream
28	LOC_Os05g32930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	19229501	19231943	-	downstream
28	LOC_Os04g54040	hypothetical protein	gene	hypothetical protein	chr4	32021553	32022502	-	downstream
28	LOC_Os10g06260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3207268	3208368	-	downstream
28	LOC_Os08g13540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	8048369	8051185	+	downstream
28	LOC_Os05g30200	hypothetical protein	gene	hypothetical protein	chr5	17442180	17442614	+	downstream
28	LOC_Os02g37210	hypothetical protein	gene	hypothetical protein	chr2	22480288	22480518	+	downstream
28	LOC_Os07g19290	hypothetical protein	gene	hypothetical protein	chr7	11416995	11418543	+	downstream
28	LOC_Os12g14190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8056933	8059950	+	downstream
28	LOC_Os11g04270	hypothetical protein	gene	hypothetical protein	chr11	1752627	1754453	+	downstream
28	LOC_Os11g35820	hypothetical protein	gene	hypothetical protein	chr11	20554688	20555910	-	downstream
28	LOC_Os03g35570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19718079	19720590	+	downstream
28	LOC_Os03g41394	unknown	gene	unknown	chr3	23038994	23039771	-	downstream
28	LOC_Os10g11120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6169798	6171324	-	downstream
28	LOC_Os02g35670	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	21439167	21439843	-	downstream
28	LOC_Os02g04190	THION23 - Plant thionin family protein precursor, expressed	gene	THION23 - Plant thionin family protein precursor, expressed	chr2	1837868	1839002	-	downstream
28	LOC_Os12g06480	PHD-finger family protein, expressed	gene	PHD-finger family protein, expressed	chr12	3117030	3123782	-	downstream
28	LOC_Os11g32140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	18499660	18504572	+	downstream
28	LOC_Os09g03700	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	1864906	1868249	+	downstream
28	LOC_Os06g27890	STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	gene	STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	chr6	15810010	15820886	-	downstream
28	LOC_Os10g01850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	550383	557111	-	downstream
28	LOC_Os03g59520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	33868541	33869926	-	downstream
28	LOC_Os12g33050	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19939829	19945951	+	downstream
28	LOC_Os02g27070	PPR repeat domain containing protein, putative, expressed	gene	PPR repeat domain containing protein, putative, expressed	chr2	15910191	15914036	-	downstream
28	LOC_Os05g42980	hypothetical protein	gene	hypothetical protein	chr5	24907364	24907879	+	downstream
28	LOC_Os02g12380	histone deacetylase, putative, expressed	gene	histone deacetylase, putative, expressed	chr2	6447078	6453173	+	downstream
28	LOC_Os08g03950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	1882287	1882934	+	downstream
28	LOC_Os08g21879	expressed protein	gene	expressed protein	chr8	13101093	13104200	+	downstream
28	LOC_Os03g47430	hypothetical protein	gene	hypothetical protein	chr3	26805410	26805772	-	downstream
28	LOC_Os01g29590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16578625	16583910	-	downstream
28	LOC_Os02g44050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26583242	26584798	-	downstream
28	LOC_Os09g17440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10660921	10662629	-	downstream
28	LOC_Os02g04970	expressed protein	gene	expressed protein	chr2	2331667	2345503	+	downstream
28	LOC_Os08g34560	hypothetical protein	gene	hypothetical protein	chr8	21703745	21704492	+	downstream
28	LOC_Os11g33000	SSA5 - 2S albumin seed storage family protein precursor, expressed	gene	SSA5 - 2S albumin seed storage family protein precursor, expressed	chr11	19042976	19043611	+	downstream
28	LOC_Os01g54760	hypothetical protein	gene	hypothetical protein	chr1	31502937	31505162	+	downstream
28	LOC_Os05g22270	hypothetical protein	gene	hypothetical protein	chr5	12550159	12550631	-	downstream
28	LOC_Os07g41870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25083745	25087050	+	downstream
28	LOC_Os06g46160	expressed protein	gene	expressed protein	chr6	27974948	27978363	-	downstream
28	LOC_Os11g37690	TBC domain containing protein, expressed	gene	TBC domain containing protein, expressed	chr11	21801319	21805355	-	downstream
28	LOC_Os11g38350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	22246900	22248297	+	downstream
28	LOC_Os01g21530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	12033943	12039182	+	downstream
28	LOC_Os08g17120	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	10476867	10479031	-	downstream
28	LOC_Os03g43900	phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed	gene	phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed	chr3	24628232	24632862	-	downstream
28	LOC_Os01g01210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	98171	99681	-	downstream
28	LOC_Os10g16640	expressed protein	gene	expressed protein	chr10	8224062	8237889	-	downstream
28	LOC_Os06g01500	IQ calmodulin-binding motif family protein, putative, expressed	gene	IQ calmodulin-binding motif family protein, putative, expressed	chr6	304994	307754	-	downstream
28	LOC_Os07g13700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7863478	7866390	+	downstream
28	LOC_Os05g07580	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	4066566	4067766	-	downstream
28	LOC_Os05g45150	anthocyanidin 5,3-O-glucosyltransferase, putative	gene	anthocyanidin 5,3-O-glucosyltransferase, putative	chr5	26152647	26155504	-	downstream
28	LOC_Os07g34200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	20457082	20460779	-	downstream
28	LOC_Os02g22300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13323985	13324752	+	downstream
28	LOC_Os04g05670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2891147	2896957	+	downstream
28	LOC_Os10g03460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	1481609	1485306	-	downstream
28	LOC_Os11g31780	hypothetical protein	gene	hypothetical protein	chr11	18186470	18188032	-	downstream
28	LOC_Os11g34780	globulin 2, putative	gene	globulin 2, putative	chr11	19911739	19912134	+	downstream
28	LOC_Os06g30760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	17840562	17843200	+	downstream
28	LOC_Os06g21420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12374748	12377078	+	downstream
28	LOC_Os04g24530	AMP-binding domain containing protein, expressed	gene	AMP-binding domain containing protein, expressed	chr4	14063332	14065452	-	downstream
28	LOC_Os04g55330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32727052	32728384	+	downstream
28	LOC_Os10g18340	expressed protein	gene	expressed protein	chr10	9244277	9245168	+	downstream
28	LOC_Os09g13900	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8180836	8184349	-	downstream
28	LOC_Os06g15450	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	8772938	8773243	-	downstream
28	LOC_Os06g34080	hypothetical protein	gene	hypothetical protein	chr6	19843398	19843700	+	downstream
28	LOC_Os10g16530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8168836	8169866	-	downstream
28	LOC_Os12g23140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13082928	13084114	-	downstream
28	LOC_Os01g25920	expressed protein	gene	expressed protein	chr1	14701279	14704972	-	downstream
28	LOC_Os04g05030	serine-rich 25 kDa antigen protein, putative, expressed	gene	serine-rich 25 kDa antigen protein, putative, expressed	chr4	2437107	2443384	+	downstream
28	LOC_Os09g13660	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	7980380	7984076	-	downstream
28	LOC_Os03g35600	serine/threonine-protein kinase receptor precursor, putative, expressed	gene	serine/threonine-protein kinase receptor precursor, putative, expressed	chr3	19725186	19729759	+	downstream
28	LOC_Os11g40249	expressed protein	gene	expressed protein	chr11	23535492	23544364	+	downstream
28	LOC_Os09g13800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr9	8085717	8088094	-	downstream
28	LOC_Os11g29170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16443633	16445401	+	downstream
28	LOC_Os11g24710	unknown	gene	unknown	chr11	13618263	13618460	-	downstream
28	LOC_Os05g50400	hypothetical protein	gene	hypothetical protein	chr5	28820920	28821771	-	downstream
28	LOC_Os11g01100	hypothetical protein	gene	hypothetical protein	chr11	51332	52266	+	downstream
28	LOC_Os08g16980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10397741	10400724	-	downstream
28	LOC_Os10g18700	hypothetical protein	gene	hypothetical protein	chr10	9430619	9433872	+	downstream
28	LOC_Os01g06000	PPR repeat containing protein, expressed	gene	PPR repeat containing protein, expressed	chr1	2861560	2866272	-	downstream
28	LOC_Os03g08390	expressed protein	gene	expressed protein	chr3	4286337	4290866	+	downstream
28	LOC_Os08g29630	hypothetical protein	gene	hypothetical protein	chr8	18177921	18178121	-	downstream
28	LOC_Os07g13950	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	7972482	7974779	-	downstream
28	LOC_Os09g10780	expressed protein	gene	expressed protein	chr9	5882560	5883196	-	downstream
28	LOC_Os01g24230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	13654780	13656163	-	downstream
28	LOC_Os04g10569	glutamyl-tRNA amidotransferase, putative	gene	glutamyl-tRNA amidotransferase, putative	chr4	5734879	5736532	+	downstream
28	LOC_Os04g43780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	25735338	25736258	-	downstream
28	LOC_Os04g40210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	23738367	23739222	+	downstream
28	LOC_Os04g18150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	10023557	10024240	+	downstream
28	LOC_Os09g14630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8676237	8679936	+	downstream
28	LOC_Os11g11930	hypothetical protein	gene	hypothetical protein	chr11	6613938	6614250	-	downstream
28	LOC_Os06g08990	expressed protein	gene	expressed protein	chr6	4530528	4531631	+	downstream
28	LOC_Os02g36285	terpene synthase family, metal binding domain containing protein	gene	terpene synthase family, metal binding domain containing protein	chr2	21905565	21906762	+	downstream
28	LOC_Os06g20550	hypothetical protein	gene	hypothetical protein	chr6	11828319	11828738	-	downstream
28	LOC_Os01g11609	unknown	gene	unknown	chr1	6260323	6260514	+	downstream
28	LOC_Os10g40150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	21422360	21428470	+	downstream
28	LOC_Os05g16670	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	9461569	9474035	+	downstream
28	LOC_Os05g05620	glutathione S-transferase, putative, expressed	gene	glutathione S-transferase, putative, expressed	chr5	2796411	2797522	+	downstream
28	LOC_Os09g06570	expressed protein	gene	expressed protein	chr9	3125602	3126160	-	downstream
28	LOC_Os06g37250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	21997613	21998647	+	downstream
28	LOC_Os11g08720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	4642248	4643306	-	downstream
28	LOC_Os02g07610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	3935178	3938525	+	downstream
28	LOC_Os04g11524	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	6301663	6304947	+	downstream
28	LOC_Os09g22280	expressed protein	gene	expressed protein	chr9	13469481	13471887	+	downstream
28	LOC_Os08g22630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13610331	13613259	-	downstream
28	LOC_Os11g34430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19702853	19703179	-	downstream
28	LOC_Os04g28690	fatty acyl coA reductase, putative	gene	fatty acyl coA reductase, putative	chr4	16829974	16831503	+	downstream
28	LOC_Os01g18180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10173366	10176559	+	downstream
28	LOC_Os07g26880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	15565485	15566178	+	downstream
28	LOC_Os06g10360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	5322131	5325222	+	downstream
28	LOC_Os06g23114	copper methylamine oxidase precursor, putative, expressed	gene	copper methylamine oxidase precursor, putative, expressed	chr6	13475488	13484210	+	downstream
28	LOC_Os05g33360	transmembrane BAX inhibitor motif-containing protein, putative, expressed	gene	transmembrane BAX inhibitor motif-containing protein, putative, expressed	chr5	19525874	19528264	-	downstream
28	LOC_Os01g46300	hypothetical protein	gene	hypothetical protein	chr1	26325434	26325863	+	downstream
28	LOC_Os11g14750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8304168	8306424	-	downstream
28	LOC_Os12g20440	hypothetical protein	gene	hypothetical protein	chr12	11931860	11933987	-	downstream
28	LOC_Os07g17050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	10035280	10038042	-	downstream
28	LOC_Os02g14310	hypothetical protein	gene	hypothetical protein	chr2	7857115	7857522	+	downstream
28	LOC_Os03g01940	expressed protein	gene	expressed protein	chr3	573189	579702	-	downstream
28	LOC_Os07g05610	zinc ion binding protein, putative, expressed	gene	zinc ion binding protein, putative, expressed	chr7	2633332	2639491	-	downstream
28	LOC_Os12g18490	hypothetical protein	gene	hypothetical protein	chr12	10689322	10689681	-	downstream
28	LOC_Os08g10740	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr8	6318166	6323381	+	downstream
28	LOC_Os06g30540	hypothetical protein	gene	hypothetical protein	chr6	17675076	17675849	-	downstream
28	LOC_Os07g44540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	26596432	26599392	-	downstream
28	LOC_Os01g51000	hypothetical protein	gene	hypothetical protein	chr1	29300215	29301385	+	downstream
28	LOC_Os01g16500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	9362722	9368009	-	downstream
28	LOC_Os06g41750	tetratricopeptide repeat domain containing protein, expressed	gene	tetratricopeptide repeat domain containing protein, expressed	chr6	25023629	25033554	-	downstream
28	LOC_Os03g31714	unknown	gene	unknown	chr3	18115928	18117728	-	downstream
28	LOC_Os11g08760	pectinesterase family protein	gene	pectinesterase family protein	chr11	4654891	4658106	+	downstream
28	LOC_Os03g20860	expressed protein	gene	expressed protein	chr3	11807069	11811921	-	downstream
28	LOC_Os08g14320	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr8	8581065	8583109	+	downstream
28	LOC_Os03g62950	expressed protein	gene	expressed protein	chr3	35599391	35600735	-	downstream
28	LOC_Os07g31370	ras-related protein, putative, expressed	gene	ras-related protein, putative, expressed	chr7	18577846	18581871	-	downstream
28	LOC_Os06g31240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18171014	18173706	+	downstream
28	LOC_Os06g16710	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9636930	9639533	-	downstream
28	LOC_Os12g25540	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	14780555	14781076	+	downstream
28	LOC_Os01g71490	hypothetical protein	gene	hypothetical protein	chr1	41402427	41403361	+	downstream
28	LOC_Os02g39764	expressed protein	gene	expressed protein	chr2	24019287	24026406	-	downstream
28	LOC_Os08g22604	hypothetical protein	gene	hypothetical protein	chr8	13600453	13601554	-	downstream
28	LOC_Os10g33140	hcrVf2 protein, putative, expressed	gene	hcrVf2 protein, putative, expressed	chr10	17293797	17295606	-	downstream
28	LOC_Os12g24540	PHD-finger family protein, expressed	gene	PHD-finger family protein, expressed	chr12	14010131	14017653	-	downstream
28	LOC_Os12g38020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	23321375	23326043	-	downstream
28	LOC_Os03g33040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18894703	18895580	+	downstream
28	LOC_Os03g05040	expressed protein	gene	expressed protein	chr3	2449604	2454272	-	downstream
28	LOC_Os09g27170	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	16518774	16519127	+	downstream
28	LOC_Os01g43100	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr1	24583610	24588379	+	downstream
28	LOC_Os03g45880	hypothetical protein	gene	hypothetical protein	chr3	25910166	25910429	-	downstream
28	LOC_Os02g42340	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	25457845	25458289	-	downstream
28	LOC_Os01g54740	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	31496630	31497374	+	downstream
28	LOC_Os01g13460	helix-loop-helix DNA-binding domain containing protein, expressed	gene	helix-loop-helix DNA-binding domain containing protein, expressed	chr1	7494057	7497391	-	downstream
28	LOC_Os05g18437	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	10660052	10660557	+	downstream
28	LOC_Os07g37490	hypothetical protein	gene	hypothetical protein	chr7	22448348	22448614	+	downstream
28	LOC_Os03g62440	hypothetical protein	gene	hypothetical protein	chr3	35358664	35359176	-	downstream
28	LOC_Os05g13890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7715888	7716913	+	downstream
28	LOC_Os02g27460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	16189556	16191285	+	downstream
28	LOC_Os09g01180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	169032	169700	-	downstream
28	LOC_Os08g16330	expressed protein	gene	expressed protein	chr8	9963658	9964744	+	downstream
28	LOC_Os02g43140	hypothetical protein	gene	hypothetical protein	chr2	25980417	25981025	-	downstream
28	LOC_Os02g26600	ATP binding, related, putative, expressed	gene	ATP binding, related, putative, expressed	chr2	15609058	15613458	-	downstream
28	LOC_Os05g41140	hypothetical protein	gene	hypothetical protein	chr5	24031176	24032928	+	downstream
28	LOC_Os09g13460	hypothetical protein	gene	hypothetical protein	chr9	7780270	7781314	-	downstream
28	LOC_Os03g27850	expressed protein	gene	expressed protein	chr3	15998015	15999190	+	downstream
28	LOC_Os02g29524	unknown	gene	unknown	chr2	17544760	17545312	-	downstream
28	LOC_Os04g01080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	62030	63668	+	downstream
28	LOC_Os07g14230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8105384	8107755	-	downstream
28	LOC_Os01g29170	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	16341375	16342734	+	downstream
28	LOC_Os09g08640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4516251	4522405	-	downstream
28	LOC_Os08g04260	hypothetical protein	gene	hypothetical protein	chr8	2071543	2072324	+	downstream
28	LOC_Os02g49090	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	30010127	30020066	-	downstream
28	LOC_Os02g29350	hypothetical protein	gene	hypothetical protein	chr2	17429981	17431271	-	downstream
28	LOC_Os06g50250	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	30421609	30422507	-	downstream
28	LOC_Os12g22720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12815130	12816719	-	downstream
28	LOC_Os01g25940	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	14712446	14712925	-	downstream
28	LOC_Os01g34639	unknown	gene	unknown	chr1	19105745	19106175	-	downstream
28	LOC_Os10g31864	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	16645003	16671307	-	downstream
28	LOC_Os01g24620	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	13863591	13866827	+	downstream
28	LOC_Os12g28640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16925317	16928602	-	downstream
28	LOC_Os01g04500	expressed protein	gene	expressed protein	chr1	2002219	2002916	-	downstream
28	LOC_Os06g07250	jacalin-like lectin domain containing protein, expressed	gene	jacalin-like lectin domain containing protein, expressed	chr6	3469796	3474964	+	downstream
28	LOC_Os10g19010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9607513	9611810	-	downstream
28	LOC_Os10g20010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	9964956	9965291	-	downstream
28	LOC_Os05g08240	hypothetical protein	gene	hypothetical protein	chr5	4496293	4498316	-	downstream
28	LOC_Os03g59630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	33945167	33946034	+	downstream
28	LOC_Os06g49930	OsFBX207 - F-box domain containing protein, expressed	gene	OsFBX207 - F-box domain containing protein, expressed	chr6	30224220	30230312	-	downstream
28	LOC_Os01g23390	hypothetical protein	gene	hypothetical protein	chr1	13144193	13144633	+	downstream
28	LOC_Os07g06139	hypothetical protein	gene	hypothetical protein	chr7	2991460	2992544	-	downstream
28	LOC_Os05g31580	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	18325281	18325868	-	downstream
28	LOC_Os08g12430	VERNALIZATION-INSENSITIVE, putative, expressed	gene	VERNALIZATION-INSENSITIVE, putative, expressed	chr8	7337831	7347082	-	downstream
28	LOC_Os08g40960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25913442	25918180	+	downstream
28	LOC_Os05g25580	OsFBX165 - F-box domain containing protein, expressed	gene	OsFBX165 - F-box domain containing protein, expressed	chr5	14808902	14812419	-	downstream
28	LOC_Os12g39740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	24508556	24512040	-	downstream
28	LOC_Os12g21660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12171280	12174257	+	downstream
28	LOC_Os04g11410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6228777	6231486	-	downstream
28	LOC_Os04g04574	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2179615	2183126	+	downstream
28	LOC_Os05g51890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29712273	29713818	+	downstream
28	LOC_Os04g50040	hypothetical protein	gene	hypothetical protein	chr4	29664711	29665761	-	downstream
28	LOC_Os11g12080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6725061	6727403	+	downstream
28	LOC_Os01g21090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11761607	11763569	-	downstream
28	LOC_Os10g14270	hypothetical protein	gene	hypothetical protein	chr10	7751451	7751666	+	downstream
28	LOC_Os12g07620	ligA, putative	gene	ligA, putative	chr12	3821609	3823507	-	downstream
28	LOC_Os12g06940	hypothetical protein	gene	hypothetical protein	chr12	3390049	3390500	-	downstream
28	LOC_Os11g44390	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	26372900	26380144	-	downstream
28	LOC_Os12g13960	LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor	gene	LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor	chr12	7933309	7933692	+	downstream
28	LOC_Os10g24270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	12363987	12366111	-	downstream
28	LOC_Os01g34240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	18877644	18878183	+	downstream
28	LOC_Os09g07680	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	3871226	3876559	+	downstream
28	LOC_Os06g49550	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr6	30007095	30009588	-	downstream
28	LOC_Os02g34884	SacI homology domain containing protein, expressed	gene	SacI homology domain containing protein, expressed	chr2	20915568	20926938	-	downstream
28	LOC_Os06g07170	hypothetical protein	gene	hypothetical protein	chr6	3432634	3433780	-	downstream
28	LOC_Os04g10950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	5935597	5938929	+	downstream
28	LOC_Os05g39890	CBL-interacting serine/threonine-protein kinase 15, putative	gene	CBL-interacting serine/threonine-protein kinase 15, putative	chr5	23375235	23375717	-	downstream
28	LOC_Os06g27570	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15605249	15605884	-	downstream
28	LOC_Os12g31350	SSXT protein, putative, expressed	gene	SSXT protein, putative, expressed	chr12	18827072	18832082	-	downstream
28	LOC_Os10g32280	hypothetical protein	gene	hypothetical protein	chr10	16872627	16873075	-	downstream
28	LOC_Os09g05030	armadillo/beta-catenin-like repeat family protein, expressed	gene	armadillo/beta-catenin-like repeat family protein, expressed	chr9	2702211	2706348	-	downstream
28	LOC_Os03g64290	myosin, putative, expressed	gene	myosin, putative, expressed	chr3	36312800	36328816	-	downstream
28	LOC_Os08g08400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	4840184	4843515	-	downstream
28	LOC_Os09g12610	hypothetical protein	gene	hypothetical protein	chr9	7225823	7226459	-	downstream
28	LOC_Os01g69800	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	40302372	40303537	+	downstream
28	LOC_Os01g66210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	38463126	38464555	-	downstream
28	LOC_Os03g23920	hypothetical protein	gene	hypothetical protein	chr3	13574524	13575951	-	downstream
28	LOC_Os04g07780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4146799	4148311	-	downstream
28	LOC_Os01g45480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	25802587	25803440	+	downstream
28	LOC_Os02g50600	glycosyl transferase 8 domain containing protein, putative, expressed	gene	glycosyl transferase 8 domain containing protein, putative, expressed	chr2	30893665	30895431	-	downstream
28	LOC_Os08g12040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7085073	7086480	+	downstream
28	LOC_Os01g23340	hypothetical protein	gene	hypothetical protein	chr1	13113057	13114933	-	downstream
28	LOC_Os12g19600	hypothetical protein	gene	hypothetical protein	chr12	11429146	11429553	+	downstream
28	LOC_Os07g07094	hypothetical protein	gene	hypothetical protein	chr7	3504518	3511002	+	downstream
28	LOC_Os10g03830	expressed protein	gene	expressed protein	chr10	1728188	1739122	-	downstream
28	LOC_Os07g22850	chalcone and stilbene synthases, putative, expressed	gene	chalcone and stilbene synthases, putative, expressed	chr7	12883551	12885098	-	downstream
28	LOC_Os04g17100	heavy metal-associated domain containing protein, expressed	gene	heavy metal-associated domain containing protein, expressed	chr4	9358634	9359857	-	downstream
28	LOC_Os09g11530	hypothetical protein	gene	hypothetical protein	chr9	6441329	6442669	-	downstream
28	LOC_Os05g21240	expressed protein	gene	expressed protein	chr5	12532896	12533174	-	downstream
28	LOC_Os09g19420	hypothetical protein	gene	hypothetical protein	chr9	11623253	11623837	+	downstream
28	LOC_Os02g21390	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	12693440	12695240	-	downstream
28	LOC_Os06g23070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	13447494	13452398	+	downstream
28	LOC_Os06g22310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	12951373	12952942	-	downstream
28	LOC_Os04g18069	unknown	gene	unknown	chr4	9965234	9965438	+	downstream
28	LOC_Os12g07500	csAtPR5, putative, expressed	gene	csAtPR5, putative, expressed	chr12	3722610	3725841	-	downstream
28	LOC_Os09g29500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17942680	17945479	+	downstream
28	LOC_Os11g22460	hypothetical protein	gene	hypothetical protein	chr11	12443240	12443797	-	downstream
28	LOC_Os05g15260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	8654981	8656197	+	downstream
28	LOC_Os11g19520	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	11241298	11247379	-	downstream
28	LOC_Os01g24849	unknown	gene	unknown	chr1	13994818	13995904	-	downstream
28	LOC_Os08g38140	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	24158136	24158842	+	downstream
28	LOC_Os11g03340	hypothetical protein	gene	hypothetical protein	chr11	1253749	1255915	+	downstream
28	LOC_Os10g20360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10166661	10168357	+	downstream
28	LOC_Os08g23960	OsFBL46 - F-box domain and LRR containing protein, expressed	gene	OsFBL46 - F-box domain and LRR containing protein, expressed	chr8	14489108	14491915	-	downstream
28	LOC_Os10g22484	RGH2B, putative, expressed	gene	RGH2B, putative, expressed	chr10	11578484	11588141	-	downstream
28	LOC_Os05g07300	serine/threonine-protein kinase receptor precursor, putative, expressed	gene	serine/threonine-protein kinase receptor precursor, putative, expressed	chr5	3878175	3881774	-	downstream
28	LOC_Os04g16890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9235523	9236908	+	downstream
28	LOC_Os07g27460	serine/threonine-protein kinase 19, putative, expressed	gene	serine/threonine-protein kinase 19, putative, expressed	chr7	15997512	16002374	+	downstream
28	LOC_Os06g35590	reticuline oxidase-like protein precursor, putative, expressed	gene	reticuline oxidase-like protein precursor, putative, expressed	chr6	20766518	20768688	-	downstream
28	LOC_Os09g04120	hypothetical protein	gene	hypothetical protein	chr9	2136173	2136941	+	downstream
28	LOC_Os04g20990	tRNA-dihydrouridine synthase, putative, expressed	gene	tRNA-dihydrouridine synthase, putative, expressed	chr4	11791875	11805701	-	downstream
28	LOC_Os12g25810	hypothetical protein	gene	hypothetical protein	chr12	14965041	14965723	-	downstream
28	LOC_Os02g56820	OsFBX69 - F-box domain containing protein, expressed	gene	OsFBX69 - F-box domain containing protein, expressed	chr2	34815478	34820117	+	downstream
28	LOC_Os05g11920	hypothetical protein	gene	hypothetical protein	chr5	6791865	6792721	-	downstream
28	LOC_Os01g36450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	20233512	20234981	+	downstream
28	LOC_Os04g15530	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr4	8440478	8444131	+	downstream
28	LOC_Os06g51380	ROOT HAIRLESS 1, putative, expressed	gene	ROOT HAIRLESS 1, putative, expressed	chr6	31117749	31120615	+	downstream
28	LOC_Os11g39969	unknown	gene	unknown	chr11	23363170	23363627	-	downstream
28	LOC_Os06g16310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9293371	9296556	+	downstream
28	LOC_Os01g05410	hypothetical protein	gene	hypothetical protein	chr1	2552620	2553021	+	downstream
28	LOC_Os05g50860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29112677	29114509	+	downstream
28	LOC_Os01g19350	hypothetical protein	gene	hypothetical protein	chr1	10949408	10949812	-	downstream
28	LOC_Os04g03780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1684281	1685081	+	downstream
28	LOC_Os10g18920	hypothetical protein	gene	hypothetical protein	chr10	9561733	9562237	+	downstream
28	LOC_Os12g32720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	19735362	19739064	-	downstream
28	LOC_Os11g05200	zinc finger, C3HC4 type domain containing protein	gene	zinc finger, C3HC4 type domain containing protein	chr11	2293555	2294286	+	downstream
28	LOC_Os07g20310	expressed protein	gene	expressed protein	chr7	11721287	11722184	-	downstream
28	LOC_Os03g42040	HEAT repeat family protein, putative, expressed	gene	HEAT repeat family protein, putative, expressed	chr3	23351406	23358854	-	downstream
28	LOC_Os06g40380	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	24050222	24052115	-	downstream
28	LOC_Os05g09070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5037754	5041045	+	downstream
28	LOC_Os12g18450	expressed protein	gene	expressed protein	chr12	10666871	10669382	+	downstream
28	LOC_Os08g44030	hypothetical protein	gene	hypothetical protein	chr8	27717228	27717554	-	downstream
28	LOC_Os03g29075	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16515228	16517600	+	downstream
28	LOC_Os06g17330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	10038369	10040890	-	downstream
28	LOC_Os08g08860	CRS2-associated factor 2, mitochondrial precursor, putative, expressed	gene	CRS2-associated factor 2, mitochondrial precursor, putative, expressed	chr8	5145987	5149355	-	downstream
28	LOC_Os03g37736	hypothetical protein	gene	hypothetical protein	chr3	20924637	20925840	-	downstream
28	LOC_Os01g19200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10859024	10862297	-	downstream
28	LOC_Os06g17600	cadmium tolerance factor, putative	gene	cadmium tolerance factor, putative	chr6	10212139	10213346	-	downstream
28	LOC_Os02g19290	hypothetical protein	gene	hypothetical protein	chr2	11273052	11273980	+	downstream
28	LOC_Os10g18710	hypothetical protein	gene	hypothetical protein	chr10	9441455	9442526	-	downstream
28	LOC_Os01g37710	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	21081768	21085516	+	downstream
28	LOC_Os01g27000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15041106	15046730	-	downstream
28	LOC_Os04g26994	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15796863	15797167	+	downstream
28	LOC_Os11g09730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5188181	5188480	-	downstream
28	LOC_Os04g26834	eukaryotic aspartyl protease domain containing protein, expressed	gene	eukaryotic aspartyl protease domain containing protein, expressed	chr4	15672586	15681818	-	downstream
28	LOC_Os11g42810	hypothetical protein	gene	hypothetical protein	chr11	25319989	25323341	-	downstream
28	LOC_Os04g01580	hypothetical protein	gene	hypothetical protein	chr4	389848	390300	+	downstream
28	LOC_Os10g19322	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9775489	9778793	+	downstream
28	LOC_Os04g10870	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	5889862	5891549	-	downstream
28	LOC_Os04g23899	unknown	gene	unknown	chr4	13651244	13652815	-	downstream
28	LOC_Os11g08880	hypothetical protein	gene	hypothetical protein	chr11	4701168	4701798	+	downstream
28	LOC_Os11g25740	hypothetical protein	gene	hypothetical protein	chr11	14214067	14214510	-	downstream
28	LOC_Os01g32930	SGS domain containing protein, expressed	gene	SGS domain containing protein, expressed	chr1	18076418	18077139	+	downstream
28	LOC_Os01g33240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	18303002	18308296	-	downstream
28	LOC_Os06g51570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	31241709	31242608	-	downstream
28	LOC_Os12g28370	hypothetical protein	gene	hypothetical protein	chr12	16773022	16773510	-	downstream
28	LOC_Os12g02990	hypothetical protein	gene	hypothetical protein	chr12	1111362	1111955	-	downstream
28	LOC_Os09g12840	plant protein of unknown function domain containing protein	gene	plant protein of unknown function domain containing protein	chr9	7377520	7379640	-	downstream
28	LOC_Os03g58720	RNA recognition motif containing protein, putative, expressed	gene	RNA recognition motif containing protein, putative, expressed	chr3	33430563	33437808	+	downstream
28	LOC_Os02g06779	expressed protein	gene	expressed protein	chr2	3420170	3423444	-	downstream
28	LOC_Os04g53260	polyphenol oxidase, putative, expressed	gene	polyphenol oxidase, putative, expressed	chr4	31542662	31544240	+	downstream
28	LOC_Os12g12820	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	7070489	7073527	-	downstream
28	LOC_Os02g31110	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	18592697	18595331	+	downstream
28	LOC_Os06g33580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	19553852	19554763	+	downstream
28	LOC_Os08g21140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	12634346	12636698	-	downstream
28	LOC_Os07g34460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	20660652	20662289	-	downstream
28	LOC_Os10g19030	hypothetical protein	gene	hypothetical protein	chr10	9619870	9620206	+	downstream
28	LOC_Os11g05890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	2764620	2767925	+	downstream
28	LOC_Os03g50940	cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed	gene	cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed	chr3	29093647	29096638	-	downstream
28	LOC_Os02g28410	transferase family protein, putative	gene	transferase family protein, putative	chr2	16800071	16801453	+	downstream
28	LOC_Os01g74210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	42986332	42990029	-	downstream
28	LOC_Os02g35560	OsFBX53 - F-box domain containing protein, expressed	gene	OsFBX53 - F-box domain containing protein, expressed	chr2	21390417	21393861	-	downstream
28	LOC_Os02g17660	hypothetical protein	gene	hypothetical protein	chr2	10165998	10166522	-	downstream
28	LOC_Os01g64040	expressed protein	gene	expressed protein	chr1	37197290	37197800	+	downstream
28	LOC_Os02g18090	expressed protein	gene	expressed protein	chr2	10509141	10512246	-	downstream
28	LOC_Os11g14840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	8342252	8345341	-	downstream
28	LOC_Os04g16250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8817455	8823975	+	downstream
28	LOC_Os05g21000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12356203	12359289	-	downstream
28	LOC_Os06g07570	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	3654070	3654535	-	downstream
28	LOC_Os08g24680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14909298	14912825	+	downstream
28	LOC_Os11g22260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12306541	12307281	-	downstream
28	LOC_Os08g33970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	21269927	21270220	+	downstream
28	LOC_Os06g06300	osFTL3  FT-Like3 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed	gene	osFTL3  FT-Like3 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed	chr6	2925824	2927475	+	downstream
28	LOC_Os05g19020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11033503	11034718	+	downstream
28	LOC_Os12g22240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12530151	12532459	-	downstream
28	LOC_Os10g12260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6839236	6840699	-	downstream
28	LOC_Os02g48250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	29530429	29533851	+	downstream
28	LOC_Os04g12890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7116907	7120916	+	downstream
28	LOC_Os06g01720	expressed protein	gene	expressed protein	chr6	419781	424168	+	downstream
28	LOC_Os05g04420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	2032861	2038461	+	downstream
28	LOC_Os03g44340	circumsporozoite protein precursor, putative	gene	circumsporozoite protein precursor, putative	chr3	24929251	24930590	-	downstream
28	LOC_Os01g13430	importin-alpha re-exporter, putative, expressed	gene	importin-alpha re-exporter, putative, expressed	chr1	7476641	7481824	-	downstream
28	LOC_Os08g28660	hypothetical protein	gene	hypothetical protein	chr8	17503441	17504515	+	downstream
28	LOC_Os05g23980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13748618	13751344	-	downstream
28	LOC_Os11g01630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	361999	365411	-	downstream
28	LOC_Os07g44220	hypothetical protein	gene	hypothetical protein	chr7	26429967	26430284	-	downstream
28	LOC_Os06g38250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22631137	22631904	-	downstream
28	LOC_Os05g47600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	27208715	27209345	+	downstream
28	LOC_Os05g15900	hypothetical protein	gene	hypothetical protein	chr5	8973657	8974303	-	downstream
28	LOC_Os06g25390	hypothetical protein	gene	hypothetical protein	chr6	14865756	14865971	-	downstream
28	LOC_Os09g12450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	7122716	7123150	-	downstream
28	LOC_Os03g47310	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	26754275	26758768	+	downstream
28	LOC_Os07g37730	NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed	gene	NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed	chr7	22618093	22620299	+	downstream
28	LOC_Os08g19270	hypothetical protein	gene	hypothetical protein	chr8	11525264	11529537	-	downstream
28	LOC_Os11g27130	HAT dimerisation protein, putative	gene	HAT dimerisation protein, putative	chr11	15147554	15148287	-	downstream
28	LOC_Os07g22360	hypothetical protein	gene	hypothetical protein	chr7	12550937	12551503	+	downstream
28	LOC_Os06g09100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	4576644	4577866	-	downstream
28	LOC_Os05g13440	coiled-coil domain-containing protein 25, putative, expressed	gene	coiled-coil domain-containing protein 25, putative, expressed	chr5	7455409	7460852	-	downstream
28	LOC_Os01g01280	expressed protein	gene	expressed protein	chr1	133291	134685	+	downstream
28	LOC_Os05g12420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7138648	7142283	+	downstream
28	LOC_Os05g27530	ras-related protein, putative, expressed	gene	ras-related protein, putative, expressed	chr5	15961705	15966230	-	downstream
28	LOC_Os07g18510	OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed	gene	OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed	chr7	10952976	10954891	-	downstream
28	LOC_Os04g51840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	30558441	30561530	+	downstream
28	LOC_Os04g12560	receptor-like protein kinase, putative, expressed	gene	receptor-like protein kinase, putative, expressed	chr4	6950573	6953192	-	downstream
28	LOC_Os06g08870	hypothetical protein	gene	hypothetical protein	chr6	4448305	4448774	+	downstream
28	LOC_Os11g32920	hypothetical protein	gene	hypothetical protein	chr11	18977956	18978201	+	downstream
28	LOC_Os02g30150	disease resistance protein, putative, expressed	gene	disease resistance protein, putative, expressed	chr2	17904762	17909604	+	downstream
28	LOC_Os08g21940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13150704	13153292	-	downstream
28	LOC_Os11g19980	hypothetical protein	gene	hypothetical protein	chr11	11491591	11491809	-	downstream
28	LOC_Os07g32640	hypothetical protein	gene	hypothetical protein	chr7	19465843	19467332	-	downstream
28	LOC_Os12g33830	OsFBX449 - F-box domain containing protein	gene	OsFBX449 - F-box domain containing protein	chr12	20371729	20373002	+	downstream
28	LOC_Os01g31170	hypothetical protein	gene	hypothetical protein	chr1	17042821	17043270	+	downstream
28	LOC_Os07g27630	hypothetical protein	gene	hypothetical protein	chr7	16133839	16134472	-	downstream
28	LOC_Os04g18030	Sec1 family transport protein, putative, expressed	gene	Sec1 family transport protein, putative, expressed	chr4	9930237	9947024	-	downstream
28	LOC_Os11g17139	unknown	gene	unknown	chr11	9514615	9515091	-	downstream
28	LOC_Os01g47870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27399682	27401701	-	downstream
28	LOC_Os01g36890	DEAD-box ATP-dependent RNA helicase, putative, expressed	gene	DEAD-box ATP-dependent RNA helicase, putative, expressed	chr1	20539784	20546067	+	downstream
28	LOC_Os02g50830	expressed protein	gene	expressed protein	chr2	31048983	31053412	-	downstream
28	LOC_Os04g20080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	11176195	11179528	+	downstream
28	LOC_Os02g20870	SNI1, putative, expressed	gene	SNI1, putative, expressed	chr2	12339725	12348539	-	downstream
28	LOC_Os02g57950	hypothetical protein	gene	hypothetical protein	chr2	35481694	35482183	-	downstream
28	LOC_Os01g02510	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	816542	817335	+	downstream
28	LOC_Os05g31080	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	18002605	18004186	-	downstream
28	LOC_Os12g17770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10171257	10171664	+	downstream
28	LOC_Os03g34250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19497592	19499846	+	downstream
28	LOC_Os07g24810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14099766	14104535	-	downstream
28	LOC_Os07g29070	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	17038444	17039923	-	downstream
28	LOC_Os06g33370	expressed protein	gene	expressed protein	chr6	19437628	19440383	-	downstream
28	LOC_Os09g04520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2405717	2409208	+	downstream
28	LOC_Os07g37870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22710097	22713145	-	downstream
28	LOC_Os09g28980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17621478	17622124	-	downstream
28	LOC_Os06g11940	dehydration-responsive element binding protein, putative, expressed	gene	dehydration-responsive element binding protein, putative, expressed	chr6	6357047	6357856	+	downstream
28	LOC_Os11g14380	resistance protein LR10, putative, expressed	gene	resistance protein LR10, putative, expressed	chr11	8068189	8073831	+	downstream
28	LOC_Os08g42700	resistance protein, putative, expressed	gene	resistance protein, putative, expressed	chr8	26986950	26994937	+	downstream
28	LOC_Os06g28480	polygalacturonase inhibitor 1 precursor, putative, expressed	gene	polygalacturonase inhibitor 1 precursor, putative, expressed	chr6	16197164	16199386	+	downstream
28	LOC_Os06g14970	hypothetical protein	gene	hypothetical protein	chr6	8490585	8492921	-	downstream
28	LOC_Os02g31240	hypothetical protein	gene	hypothetical protein	chr2	18721204	18721986	+	downstream
28	LOC_Os05g10710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	5893908	5896706	-	downstream
28	LOC_Os07g02850	DUF538 domain containing protein, putative, expressed	gene	DUF538 domain containing protein, putative, expressed	chr7	1066018	1066868	+	downstream
28	LOC_Os12g43860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	27200181	27200807	+	downstream
28	LOC_Os06g22120	hypothetical protein	gene	hypothetical protein	chr6	12838382	12840368	+	downstream
28	LOC_Os03g32690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18729787	18732144	+	downstream
28	LOC_Os09g17170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10536403	10537957	+	downstream
28	LOC_Os01g62720	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr1	36316162	36316979	+	downstream
28	LOC_Os01g47860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	27396080	27398676	+	downstream
28	LOC_Os02g21140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12548724	12550304	-	downstream
28	LOC_Os05g10270	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	5602185	5609572	+	downstream
28	LOC_Os12g08310	hypothetical protein	gene	hypothetical protein	chr12	4225302	4225670	-	downstream
28	LOC_Os12g03150	myb-like DNA-binding domain containing protein, putative, expressed	gene	myb-like DNA-binding domain containing protein, putative, expressed	chr12	1199471	1201202	-	downstream
28	LOC_Os08g34310	ZOS8-05 - C2H2 zinc finger protein	gene	ZOS8-05 - C2H2 zinc finger protein	chr8	21528625	21532524	-	downstream
28	LOC_Os07g37940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	22765128	22766934	+	downstream
28	LOC_Os09g04730	dehydrogenase/reductase SDR family member 2, putative, expressed	gene	dehydrogenase/reductase SDR family member 2, putative, expressed	chr9	2511441	2516277	-	downstream
28	LOC_Os10g09070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4923162	4924477	-	downstream
28	LOC_Os03g32532	unknown	gene	unknown	chr3	18608737	18608963	+	downstream
28	LOC_Os10g20400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10187607	10191011	+	downstream
28	LOC_Os05g31050	hypothetical protein	gene	hypothetical protein	chr5	17979145	17979559	-	downstream
28	LOC_Os04g04140	hypothetical protein	gene	hypothetical protein	chr4	1911354	1912432	-	downstream
28	LOC_Os05g49570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	28368412	28373156	-	downstream
28	LOC_Os06g02910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1070114	1070593	+	downstream
28	LOC_Os05g12070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6904046	6904294	+	downstream
28	LOC_Os09g24770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14753593	14758908	-	downstream
28	LOC_Os11g36910	hypothetical protein	gene	hypothetical protein	chr11	21302376	21302738	-	downstream
28	LOC_Os12g33330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	20130894	20136989	+	downstream
28	LOC_Os04g29120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17108034	17109802	+	downstream
28	LOC_Os06g16210	expressed protein	gene	expressed protein	chr6	9228869	9230629	-	downstream
28	LOC_Os11g28390	hypothetical protein	gene	hypothetical protein	chr11	15876729	15877655	+	downstream
28	LOC_Os12g08940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	4666699	4668135	+	downstream
28	LOC_Os02g37890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	22894844	22900596	-	downstream
28	LOC_Os09g11520	DUF565 domain containing protein, putative, expressed	gene	DUF565 domain containing protein, putative, expressed	chr9	6438622	6440905	-	downstream
28	LOC_Os02g04340	NIN-like protein 2, putative, expressed	gene	NIN-like protein 2, putative, expressed	chr2	1913425	1916183	-	downstream
28	LOC_Os08g04939	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2527267	2527698	+	downstream
28	LOC_Os12g26600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	15573376	15575586	-	downstream
28	LOC_Os01g59250	expressed protein	gene	expressed protein	chr1	34245208	34248580	-	downstream
28	LOC_Os04g51740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	30472254	30478159	-	downstream
28	LOC_Os05g27160	hypothetical protein	gene	hypothetical protein	chr5	15744923	15745357	+	downstream
28	LOC_Os04g33790	hypothetical protein	gene	hypothetical protein	chr4	20294252	20297320	-	downstream
28	LOC_Os09g39880	hypothetical protein	gene	hypothetical protein	chr9	22862064	22866509	-	downstream
28	LOC_Os09g28970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17617937	17620748	+	downstream
28	LOC_Os11g06595	expressed protein	gene	expressed protein	chr11	3180447	3181015	+	downstream
28	LOC_Os11g36840	hypothetical protein	gene	hypothetical protein	chr11	21268054	21270020	-	downstream
28	LOC_Os09g17210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10565285	10566313	+	downstream
28	LOC_Os06g31100	E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed	gene	E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed	chr6	18079932	18085703	-	downstream
28	LOC_Os10g09480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5127434	5129644	+	downstream
28	LOC_Os05g16869	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	9614604	9615029	-	downstream
28	LOC_Os09g23800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	14176383	14179649	-	downstream
28	LOC_Os06g31390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18264638	18270632	-	downstream
28	LOC_Os03g11080	expressed protein	gene	expressed protein	chr3	5697284	5698187	+	downstream
28	LOC_Os05g08560	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	4669083	4672362	-	downstream
28	LOC_Os07g08900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	4626387	4629960	+	downstream
28	LOC_Os08g21490	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12804235	12807451	-	downstream
28	LOC_Os11g30010	NB-ARC domain containing protein	gene	NB-ARC domain containing protein	chr11	16987221	16989064	-	downstream
28	LOC_Os05g03030	50S ribosomal protein L10, chloroplast precursor, putative, expressed	gene	50S ribosomal protein L10, chloroplast precursor, putative, expressed	chr5	1146173	1147090	-	downstream
28	LOC_Os08g38170	methyladenine glycosylase, putative, expressed	gene	methyladenine glycosylase, putative, expressed	chr8	24183956	24186755	+	downstream
28	LOC_Os11g36370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	20963995	20967135	+	downstream
28	LOC_Os06g15340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8706841	8710440	-	downstream
28	LOC_Os05g51720	hypothetical protein	gene	hypothetical protein	chr5	29605801	29606193	-	downstream
28	LOC_Os02g22510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13431683	13433435	-	downstream
28	LOC_Os03g01480	hypothetical protein	gene	hypothetical protein	chr3	315094	316553	-	downstream
28	LOC_Os02g26110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15331835	15337799	-	downstream
28	LOC_Os02g22450	expressed protein	gene	expressed protein	chr2	13410341	13410652	+	downstream
28	LOC_Os08g34190	stromal cell-derived factor 2-like protein precursor, putative, expressed	gene	stromal cell-derived factor 2-like protein precursor, putative, expressed	chr8	21430885	21434022	-	downstream
28	LOC_Os06g05030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	2217374	2220633	+	downstream
28	LOC_Os09g37400	OsSAUR45 - Auxin-responsive SAUR gene family member	gene	OsSAUR45 - Auxin-responsive SAUR gene family member	chr9	21585632	21586301	+	downstream
28	LOC_Os03g29770	EF hand family protein, expressed	gene	EF hand family protein, expressed	chr3	16973648	16974609	-	downstream
28	LOC_Os02g20990	hypothetical protein	gene	hypothetical protein	chr2	12428182	12428559	-	downstream
28	LOC_Os04g45870	hypothetical protein	gene	hypothetical protein	chr4	26975233	26977562	+	downstream
28	LOC_Os02g55689	hypothetical protein	gene	hypothetical protein	chr2	34096058	34098749	+	downstream
28	LOC_Os12g12590	NADP-dependent oxidoreductase, putative, expressed	gene	NADP-dependent oxidoreductase, putative, expressed	chr12	6931472	6935961	+	downstream
28	LOC_Os01g46650	hypothetical protein	gene	hypothetical protein	chr1	26564316	26566205	+	downstream
28	LOC_Os09g34870	pentatricopeptide, putative	gene	pentatricopeptide, putative	chr9	20321406	20325291	+	downstream
28	LOC_Os12g33470	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	20198506	20198937	+	downstream
28	LOC_Os10g07568	hypothetical protein	gene	hypothetical protein	chr10	4104012	4104619	-	downstream
28	LOC_Os03g19050	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	10663651	10670439	-	downstream
28	LOC_Os05g28920	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	16888507	16891631	+	downstream
28	LOC_Os08g04870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2482495	2487398	-	downstream
28	LOC_Os09g18400	hypothetical protein	gene	hypothetical protein	chr9	11291525	11292537	+	downstream
28	LOC_Os01g70210	CRAL/TRIO domain containing protein, expressed	gene	CRAL/TRIO domain containing protein, expressed	chr1	40643554	40647391	+	downstream
28	LOC_Os08g09970	hypothetical protein	gene	hypothetical protein	chr8	5760671	5761175	+	downstream
28	LOC_Os10g01200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	131094	132035	-	downstream
28	LOC_Os08g24520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	14803936	14806841	+	downstream
28	LOC_Os06g36890	glycosyl transferase, group 1 domain containing protein	gene	glycosyl transferase, group 1 domain containing protein	chr6	21734128	21738841	-	downstream
28	LOC_Os04g25060	cysteine-rich receptor-like protein kinase, putative, expressed	gene	cysteine-rich receptor-like protein kinase, putative, expressed	chr4	14444180	14445525	-	downstream
28	LOC_Os02g22400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13380423	13381990	+	downstream
28	LOC_Os11g04140	nodulin, putative	gene	nodulin, putative	chr11	1676806	1678456	+	downstream
28	LOC_Os05g18830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10939363	10941656	+	downstream
28	LOC_Os02g40150	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	24299498	24300291	+	downstream
28	LOC_Os06g36280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	21260716	21261381	+	downstream
28	LOC_Os06g18040	hypothetical protein	gene	hypothetical protein	chr6	10502592	10502831	+	downstream
28	LOC_Os02g16460	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	9400982	9402637	+	downstream
28	LOC_Os08g02870	hypothetical protein	gene	hypothetical protein	chr8	1218336	1220588	+	downstream
28	LOC_Os06g16220	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	9233087	9236324	+	downstream
28	LOC_Os08g33570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	20954726	20960562	-	downstream
28	LOC_Os06g50560	START domain containing protein	gene	START domain containing protein	chr6	30605146	30611938	-	downstream
28	LOC_Os08g19620	hypothetical protein	gene	hypothetical protein	chr8	11735529	11736664	+	downstream
28	LOC_Os10g09920	LTPL132 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed	gene	LTPL132 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed	chr10	5385768	5386212	+	downstream
28	LOC_Os03g33190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18985524	18988178	-	downstream
28	LOC_Os01g23400	hypothetical protein	gene	hypothetical protein	chr1	13145625	13145999	-	downstream
28	LOC_Os05g26600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15393232	15399348	+	downstream
28	LOC_Os09g21630	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13098443	13102496	-	downstream
28	LOC_Os03g62790	pirin, putative, expressed	gene	pirin, putative, expressed	chr3	35517091	35519232	-	downstream
28	LOC_Os07g17070	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	10045009	10045395	+	downstream
28	LOC_Os05g42960	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr5	24877364	24884085	-	downstream
28	LOC_Os06g03350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	1280435	1280976	+	downstream
28	LOC_Os12g42739	expressed protein	gene	expressed protein	chr12	26527337	26528427	-	downstream
28	LOC_Os06g15840	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8991764	8995096	+	downstream
28	LOC_Os02g22070	expressed protein	gene	expressed protein	chr2	13127049	13132579	+	downstream
28	LOC_Os07g06030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	2922358	2926103	-	downstream
28	LOC_Os03g23810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13499284	13502134	-	downstream
28	LOC_Os02g04580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	2047914	2048255	-	downstream
28	LOC_Os01g72920	hypothetical protein	gene	hypothetical protein	chr1	42287429	42288562	-	downstream
28	LOC_Os06g24150	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14132477	14134327	+	downstream
28	LOC_Os04g47210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	27856342	27857122	+	downstream
28	LOC_Os10g29540	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr10	15270653	15279763	-	downstream
28	LOC_Os07g14180	hypothetical protein	gene	hypothetical protein	chr7	8090382	8090759	-	downstream
28	LOC_Os12g34820	hypothetical protein	gene	hypothetical protein	chr12	21167251	21167925	-	downstream
28	LOC_Os01g05570	hypothetical protein	gene	hypothetical protein	chr1	2659822	2660301	+	downstream
28	LOC_Os04g44620	hus1-like protein, expressed	gene	hus1-like protein, expressed	chr4	26212630	26219583	-	downstream
28	LOC_Os02g17440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10034582	10038860	-	downstream
28	LOC_Os03g28940	ZIM domain containing protein, putative, expressed	gene	ZIM domain containing protein, putative, expressed	chr3	16406315	16408725	-	downstream
28	LOC_Os11g01800	hypothetical protein	gene	hypothetical protein	chr11	426040	426741	-	downstream
28	LOC_Os07g16880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9924496	9925701	-	downstream
28	LOC_Os02g14090	berberine and berberine like domain containing protein, expressed	gene	berberine and berberine like domain containing protein, expressed	chr2	7690242	7692253	+	downstream
28	LOC_Os01g35360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19559289	19560638	-	downstream
28	LOC_Os02g38550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	23298381	23302901	+	downstream
28	LOC_Os01g28810	expressed protein	gene	expressed protein	chr1	16134846	16140108	-	downstream
28	LOC_Os09g08810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4645765	4646219	-	downstream
28	LOC_Os03g54990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	31262012	31262599	-	downstream
28	LOC_Os01g27510	hypothetical protein	gene	hypothetical protein	chr1	15352949	15353353	-	downstream
28	LOC_Os05g12500	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	7184007	7184285	-	downstream
28	LOC_Os08g30440	hypothetical protein	gene	hypothetical protein	chr8	18732825	18735905	-	downstream
28	LOC_Os11g07070	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	3519331	3520063	-	downstream
28	LOC_Os11g37590	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr11	21723417	21726698	+	downstream
28	LOC_Os10g21840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11151962	11155044	-	downstream
28	LOC_Os06g45800	PAP/25A associated domain containing protein, putative, expressed	gene	PAP/25A associated domain containing protein, putative, expressed	chr6	27708822	27718177	-	downstream
28	LOC_Os05g43210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	25045710	25046856	-	downstream
28	LOC_Os12g23869	hypothetical protein	gene	hypothetical protein	chr12	13574084	13574766	-	downstream
28	LOC_Os11g10250	expressed protein	gene	expressed protein	chr11	5558588	5564059	-	downstream
28	LOC_Os08g32140	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	19940036	19942143	-	downstream
28	LOC_Os07g25900	expressed protein	gene	expressed protein	chr7	14867471	14871154	-	downstream
28	LOC_Os02g22660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13498911	13499570	+	downstream
28	LOC_Os07g12670	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	7238166	7240110	-	downstream
28	LOC_Os02g25840	conserved oligomeric Golgi complex component 4, related, putative, expressed	gene	conserved oligomeric Golgi complex component 4, related, putative, expressed	chr2	15135610	15137741	-	downstream
28	LOC_Os04g43930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	25862678	25863238	+	downstream
28	LOC_Os12g11100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	5978774	5979511	+	downstream
28	LOC_Os04g31910	expressed protein	gene	expressed protein	chr4	18941912	18944940	-	downstream
28	LOC_Os05g25760	hypothetical protein	gene	hypothetical protein	chr5	14930305	14931970	+	downstream
28	LOC_Os04g09350	expressed protein	gene	expressed protein	chr4	4960965	4970808	+	downstream
28	LOC_Os09g23050	hypothetical protein	gene	hypothetical protein	chr9	13612551	13613024	-	downstream
28	LOC_Os01g01550	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	279846	282924	-	downstream
28	LOC_Os12g04890	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	2100030	2101631	+	downstream
28	LOC_Os07g31400	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr7	18596889	18602413	-	downstream
28	LOC_Os01g39399	hypothetical protein	gene	hypothetical protein	chr1	22206042	22207088	-	downstream
28	LOC_Os07g27680	hypothetical protein	gene	hypothetical protein	chr7	16149953	16150887	-	downstream
28	LOC_Os05g23360	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	13281444	13283045	+	downstream
28	LOC_Os02g39920	AT hook motif family protein, expressed	gene	AT hook motif family protein, expressed	chr2	24133884	24140836	-	downstream
28	LOC_Os08g31670	transporter, putative, expressed	gene	transporter, putative, expressed	chr8	19629999	19632901	+	downstream
28	LOC_Os12g29890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17841184	17843506	-	downstream
28	LOC_Os08g27060	hypothetical protein	gene	hypothetical protein	chr8	16530209	16531210	-	downstream
28	LOC_Os04g07730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4109071	4110186	+	downstream
28	LOC_Os05g50940	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	29165609	29166605	+	downstream
28	LOC_Os10g03809	unknown	gene	unknown	chr10	1721164	1721790	+	downstream
28	LOC_Os10g42560	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	22876144	22876539	-	downstream
28	LOC_Os04g50184	hypothetical protein	gene	hypothetical protein	chr4	29758959	29759360	-	downstream
28	LOC_Os10g11672	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6455909	6460417	+	downstream
28	LOC_Os08g33120	RNA recognition motif containing protein, putative, expressed	gene	RNA recognition motif containing protein, putative, expressed	chr8	20575999	20580783	-	downstream
28	LOC_Os06g25830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15086831	15089298	-	downstream
28	LOC_Os10g07090	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	3731385	3733629	-	downstream
28	LOC_Os02g36290	hypothetical protein	gene	hypothetical protein	chr2	21907156	21907607	-	downstream
28	LOC_Os03g21759	hypothetical protein	gene	hypothetical protein	chr3	12435458	12436466	-	downstream
28	LOC_Os09g15610	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	9529692	9532617	-	downstream
28	LOC_Os02g42090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	25294070	25294501	-	downstream
28	LOC_Os02g26250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15414849	15415337	-	downstream
28	LOC_Os01g32410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17777582	17779119	-	downstream
28	LOC_Os09g07870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	3998931	4001868	-	downstream
28	LOC_Os07g01350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	225028	225378	+	downstream
28	LOC_Os12g01090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	42782	49102	+	downstream
28	LOC_Os06g19690	expressed protein	gene	expressed protein	chr6	11243643	11247711	-	downstream
28	LOC_Os09g27470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	16681896	16684189	-	downstream
28	LOC_Os03g37820	hypothetical protein	gene	hypothetical protein	chr3	20962967	20963251	-	downstream
28	LOC_Os02g38370	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr2	23190422	23193834	+	downstream
28	LOC_Os02g20410	GTP binding protein, putative, expressed	gene	GTP binding protein, putative, expressed	chr2	12023801	12034637	-	downstream
28	LOC_Os06g24550	hypothetical protein	gene	hypothetical protein	chr6	14393106	14393456	+	downstream
28	LOC_Os03g24184	TRAF-type zinc finger domain-containing protein 1, putative, expressed	gene	TRAF-type zinc finger domain-containing protein 1, putative, expressed	chr3	13742270	13746877	-	downstream
28	LOC_Os07g05920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	2855180	2855723	+	downstream
28	LOC_Os01g10900	MRH1, putative, expressed	gene	MRH1, putative, expressed	chr1	5813778	5818207	-	downstream
28	LOC_Os05g36020	hypothetical protein	gene	hypothetical protein	chr5	21270327	21270650	-	downstream
28	LOC_Os05g14610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8324411	8327926	+	downstream
28	LOC_Os11g03240	MATE efflux family protein, putative, expressed	gene	MATE efflux family protein, putative, expressed	chr11	1185105	1188697	+	downstream
28	LOC_Os05g05650	C2 domain containing protein, putative, expressed	gene	C2 domain containing protein, putative, expressed	chr5	2806139	2807980	-	downstream
28	LOC_Os08g26870	wound responsive protein, putative, expressed	gene	wound responsive protein, putative, expressed	chr8	16337619	16342573	-	downstream
28	LOC_Os10g24350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	12404788	12405501	+	downstream
28	LOC_Os08g36660	expressed protein	gene	expressed protein	chr8	23130917	23133170	-	downstream
28	LOC_Os05g23430	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr5	13327498	13333610	-	downstream
28	LOC_Os12g13320	argininosuccinate synthase, chloroplast precursor, putative, expressed	gene	argininosuccinate synthase, chloroplast precursor, putative, expressed	chr12	7427937	7432087	+	downstream
28	LOC_Os11g37740	stripe rust resistance protein Yr10, putative, expressed	gene	stripe rust resistance protein Yr10, putative, expressed	chr11	21844837	21853027	+	downstream
28	LOC_Os09g07050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	3414876	3415427	-	downstream
28	LOC_Os10g15040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7891764	7895577	-	downstream
28	LOC_Os06g28060	ATP-binding region, ATPase-like domain containing protein, expressed	gene	ATP-binding region, ATPase-like domain containing protein, expressed	chr6	15921987	15932060	-	downstream
28	LOC_Os05g16420	SHR5-receptor-like kinase, putative, expressed	gene	SHR5-receptor-like kinase, putative, expressed	chr5	9317951	9318559	+	downstream
28	LOC_Os02g32390	hypothetical protein	gene	hypothetical protein	chr2	19136481	19138368	+	downstream
28	LOC_Os10g29120	speckle-type POZ protein, putative	gene	speckle-type POZ protein, putative	chr10	15100338	15101824	+	downstream
28	LOC_Os07g28830	hypothetical protein	gene	hypothetical protein	chr7	16874585	16876015	-	downstream
28	LOC_Os10g02440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	889938	891421	-	downstream
28	LOC_Os10g20100	hypothetical protein	gene	hypothetical protein	chr10	10025851	10026366	+	downstream
28	LOC_Os08g44420	kinesin-related protein, putative, expressed	gene	kinesin-related protein, putative, expressed	chr8	27939992	27946104	-	downstream
28	LOC_Os01g37970	hypothetical protein	gene	hypothetical protein	chr1	21272184	21272806	+	downstream
28	LOC_Os11g23000	hypothetical protein	gene	hypothetical protein	chr11	12764221	12764655	-	downstream
28	LOC_Os05g35594	peptide transporter, putative, expressed	gene	peptide transporter, putative, expressed	chr5	21081775	21085804	-	downstream
28	LOC_Os10g11910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6622838	6624330	+	downstream
28	LOC_Os03g22960	expressed protein	gene	expressed protein	chr3	13261851	13263182	+	downstream
28	LOC_Os04g53780	leucoanthocyanidin reductase, putative, expressed	gene	leucoanthocyanidin reductase, putative, expressed	chr4	31863955	31866586	+	downstream
28	LOC_Os10g06720	aldose 1-epimerase, putative, expressed	gene	aldose 1-epimerase, putative, expressed	chr10	3474519	3477174	-	downstream
28	LOC_Os04g46300	disease resistance protein RPM1, putative, expressed	gene	disease resistance protein RPM1, putative, expressed	chr4	27245706	27249493	-	downstream
28	LOC_Os07g11600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6400855	6404152	+	downstream
28	LOC_Os01g25070	hypothetical protein	gene	hypothetical protein	chr1	14148963	14149241	+	downstream
28	LOC_Os04g04900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2355161	2359573	+	downstream
28	LOC_Os08g09680	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	5592096	5592407	-	downstream
28	LOC_Os05g12610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7238807	7240361	-	downstream
28	LOC_Os03g44980	OsFBX99 - F-box domain containing protein	gene	OsFBX99 - F-box domain containing protein	chr3	25393375	25394919	+	downstream
28	LOC_Os06g07160	expressed protein	gene	expressed protein	chr6	3427700	3432506	+	downstream
28	LOC_Os03g20050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	11296079	11299472	+	downstream
28	LOC_Os07g41490	hypothetical protein	gene	hypothetical protein	chr7	24858128	24858595	-	downstream
28	LOC_Os08g35000	ARID/BRIGHT DNA-binding domain containing protein, expressed	gene	ARID/BRIGHT DNA-binding domain containing protein, expressed	chr8	22036137	22045964	-	downstream
28	LOC_Os06g19220	hypothetical protein	gene	hypothetical protein	chr6	10935352	10935744	-	downstream
28	LOC_Os02g22780	T-complex protein, putative, expressed	gene	T-complex protein, putative, expressed	chr2	13560749	13565938	-	downstream
28	LOC_Os06g20000	hypothetical protein	gene	hypothetical protein	chr6	11468461	11468730	-	downstream
28	LOC_Os04g55870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	33083070	33086297	+	downstream
28	LOC_Os02g36230	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	21861613	21863711	+	downstream
28	LOC_Os05g16990	hypothetical protein	gene	hypothetical protein	chr5	9695224	9696144	-	downstream
28	LOC_Os07g16800	OsFBX233 - F-box domain containing protein	gene	OsFBX233 - F-box domain containing protein	chr7	9857218	9859580	+	downstream
28	LOC_Os09g05090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	2738488	2739510	+	downstream
28	LOC_Os10g14870	heavy metal-associated domain containing protein, expressed	gene	heavy metal-associated domain containing protein, expressed	chr10	7794897	7796966	+	downstream
28	LOC_Os02g33250	hypothetical protein	gene	hypothetical protein	chr2	19759364	19759774	-	downstream
28	LOC_Os06g29260	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	16696275	16714448	+	downstream
28	LOC_Os03g05940	hypothetical protein	gene	hypothetical protein	chr3	2969534	2969932	-	downstream
28	LOC_Os04g34699	hypothetical protein	gene	hypothetical protein	chr4	20819399	20823076	+	downstream
28	LOC_Os01g28530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	15969444	15971675	-	downstream
28	LOC_Os10g23230	AT hook-containing MAR binding 1, putative	gene	AT hook-containing MAR binding 1, putative	chr10	12048453	12049040	-	downstream
28	LOC_Os06g24660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14482685	14485693	+	downstream
28	LOC_Os11g24240	sinapoylglucose choline sinapoyltransferase, putative	gene	sinapoylglucose choline sinapoyltransferase, putative	chr11	13347004	13348694	-	downstream
28	LOC_Os05g30170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	17425282	17427455	-	downstream
28	LOC_Os08g15730	hypothetical protein	gene	hypothetical protein	chr8	9546405	9546614	+	downstream
28	LOC_Os03g43360	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr3	24172396	24178539	-	downstream
28	LOC_Os01g52420	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	30118966	30119196	+	downstream
28	LOC_Os06g39940	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	23753901	23757420	-	downstream
28	LOC_Os02g21800	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	12954659	12954946	+	downstream
28	LOC_Os03g53430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30643023	30647770	+	downstream
28	LOC_Os10g21956	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	11265101	11267727	-	downstream
28	LOC_Os04g07830	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	4165211	4166431	-	downstream
28	LOC_Os04g07210	hypothetical protein	gene	hypothetical protein	chr4	3823013	3823639	+	downstream
28	LOC_Os09g07390	hypothetical protein	gene	hypothetical protein	chr9	3675722	3676558	-	downstream
28	LOC_Os01g29120	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16310226	16310927	-	downstream
28	LOC_Os03g48457	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27590540	27593871	+	downstream
28	LOC_Os03g44400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24976698	24979868	-	downstream
28	LOC_Os07g06500	OsFBL34 - F-box domain and LRR containing protein, expressed	gene	OsFBL34 - F-box domain and LRR containing protein, expressed	chr7	3152396	3156168	-	downstream
28	LOC_Os12g26850	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	15725852	15731668	-	downstream
28	LOC_Os11g26350	hypothetical protein	gene	hypothetical protein	chr11	14615464	14617908	+	downstream
28	LOC_Os03g62190	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	35217834	35223812	+	downstream
28	LOC_Os06g39200	hypothetical protein	gene	hypothetical protein	chr6	23276563	23278020	+	downstream
28	LOC_Os07g36760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	22023808	22026098	-	downstream
28	LOC_Os02g56780	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	34797090	34800790	-	downstream
28	LOC_Os01g23820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	13400898	13401356	-	downstream
28	LOC_Os04g55899	hypothetical protein	gene	hypothetical protein	chr4	33102045	33102257	-	downstream
28	LOC_Os12g31230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18774852	18779179	+	downstream
28	LOC_Os06g28560	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	16250106	16251884	+	downstream
28	LOC_Os10g11060	ACI13, putative, expressed	gene	ACI13, putative, expressed	chr10	6128064	6131805	+	downstream
28	LOC_Os01g29280	expressed protein	gene	expressed protein	chr1	16414015	16415112	+	downstream
28	LOC_Os05g19170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	11122463	11125573	-	downstream
28	LOC_Os07g34660	hypothetical protein	gene	hypothetical protein	chr7	20779839	20780144	+	downstream
28	LOC_Os08g24360	hypothetical protein	gene	hypothetical protein	chr8	14700051	14702463	-	downstream
28	LOC_Os06g24470	hypothetical protein	gene	hypothetical protein	chr6	14336586	14338038	-	downstream
28	LOC_Os11g45339	unknown	gene	unknown	chr11	26960584	26961025	+	downstream
28	LOC_Os08g12180	hypothetical protein	gene	hypothetical protein	chr8	7169252	7172408	-	downstream
28	LOC_Os04g16480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	8953704	8954102	-	downstream
28	LOC_Os01g47210	hypothetical protein	gene	hypothetical protein	chr1	26980275	26980535	-	downstream
28	LOC_Os09g19750	expressed protein	gene	expressed protein	chr9	11817397	11820424	-	downstream
28	LOC_Os11g18839	unknown	gene	unknown	chr11	10696952	10697062	+	downstream
28	LOC_Os01g27300	glutathione S-transferase GSTF1, putative	gene	glutathione S-transferase GSTF1, putative	chr1	15233419	15233667	+	downstream
28	LOC_Os10g19820	hypothetical protein	gene	hypothetical protein	chr10	9812595	9814432	+	downstream
28	LOC_Os07g01114	expressed protein	gene	expressed protein	chr7	65665	66808	-	downstream
28	LOC_Os05g06870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	3595513	3601668	-	downstream
28	LOC_Os08g30460	hypothetical protein	gene	hypothetical protein	chr8	18747019	18747585	+	downstream
28	LOC_Os04g27620	expressed protein	gene	expressed protein	chr4	16157624	16160112	-	downstream
28	LOC_Os02g39850	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr2	24074835	24078895	+	downstream
28	LOC_Os06g30820	expressed protein	gene	expressed protein	chr6	17870087	17873269	-	downstream
28	LOC_Os10g28430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	14718927	14719376	-	downstream
28	LOC_Os04g19470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	10835428	10836875	+	downstream
28	LOC_Os12g14590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8332026	8332583	-	downstream
28	LOC_Os04g18480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10203426	10208156	+	downstream
28	LOC_Os01g49970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	28713263	28716488	+	downstream
28	LOC_Os06g42500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25550263	25553963	-	downstream
28	LOC_Os11g20300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11723669	11727191	-	downstream
28	LOC_Os01g61870	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	35806724	35807245	+	downstream
28	LOC_Os09g19800	aminopeptidase, putative	gene	aminopeptidase, putative	chr9	11852027	11856936	+	downstream
28	LOC_Os08g25480	hypothetical protein	gene	hypothetical protein	chr8	15503144	15503979	+	downstream
28	LOC_Os06g37600	expressed protein	gene	expressed protein	chr6	22259998	22261041	+	downstream
28	LOC_Os08g14280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8555979	8557466	+	downstream
28	LOC_Os02g25370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14782511	14784953	-	downstream
28	LOC_Os04g21040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11818256	11821115	+	downstream
28	LOC_Os07g22910	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	12905254	12907656	+	downstream
28	LOC_Os01g46890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	26749406	26751055	-	downstream
28	LOC_Os12g10110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5348232	5349218	-	downstream
28	LOC_Os08g05690	ABC transporter, ATP-binding protein, putative	gene	ABC transporter, ATP-binding protein, putative	chr8	3049171	3055076	+	downstream
28	LOC_Os08g04280	actin, putative, expressed	gene	actin, putative, expressed	chr8	2083557	2092721	+	downstream
28	LOC_Os02g56229	unknown	gene	unknown	chr2	34385019	34386372	+	downstream
28	LOC_Os09g21000	potassium transporter, putative, expressed	gene	potassium transporter, putative, expressed	chr9	12661737	12666522	-	downstream
28	LOC_Os06g30790	CAF1 family ribonuclease containing protein, putative	gene	CAF1 family ribonuclease containing protein, putative	chr6	17859786	17862357	+	downstream
28	LOC_Os11g36620	hypothetical protein	gene	hypothetical protein	chr11	21144596	21145832	+	downstream
28	LOC_Os05g22420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12668966	12669988	+	downstream
28	LOC_Os12g10560	clathrin adaptor complex small chain domain containing protein, expressed	gene	clathrin adaptor complex small chain domain containing protein, expressed	chr12	5601155	5605132	+	downstream
28	LOC_Os06g35230	hypothetical protein	gene	hypothetical protein	chr6	20552375	20552868	+	downstream
28	LOC_Os09g03130	hypothetical protein	gene	hypothetical protein	chr9	1495013	1495378	+	downstream
28	LOC_Os10g08790	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	4779406	4779870	+	downstream
28	LOC_Os12g16010	sex determination protein tasselseed-2, putative, expressed	gene	sex determination protein tasselseed-2, putative, expressed	chr12	9121521	9122856	-	downstream
28	LOC_Os01g62620	DHHC zinc finger domain containing protein, expressed	gene	DHHC zinc finger domain containing protein, expressed	chr1	36256392	36260701	-	downstream
28	LOC_Os12g15250	hypothetical protein	gene	hypothetical protein	chr12	8687515	8688216	-	downstream
28	LOC_Os09g03460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1703759	1704445	+	downstream
28	LOC_Os09g06464	CCT/B-box zinc finger protein, putative, expressed	gene	CCT/B-box zinc finger protein, putative, expressed	chr9	3047020	3063571	-	downstream
28	LOC_Os04g26000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15121547	15125247	-	downstream
28	LOC_Os12g28280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16714626	16717535	+	downstream
28	LOC_Os12g37020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	22656590	22659030	-	downstream
28	LOC_Os08g11610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6813047	6814413	-	downstream
28	LOC_Os04g47730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	28134091	28136581	+	downstream
28	LOC_Os11g37840	hypothetical protein	gene	hypothetical protein	chr11	21947373	21948106	+	downstream
28	LOC_Os07g22080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	12341315	12342241	+	downstream
28	LOC_Os11g30260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17122623	17123398	-	downstream
28	LOC_Os09g12070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6813647	6815509	+	downstream
28	LOC_Os10g04800	hypothetical protein	gene	hypothetical protein	chr10	2316270	2316561	+	downstream
28	LOC_Os03g14400	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr3	7830814	7832729	-	downstream
28	LOC_Os04g12370	hypothetical protein	gene	hypothetical protein	chr4	6817680	6818111	+	downstream
28	LOC_Os06g44790	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	27058073	27061660	-	downstream
28	LOC_Os02g27080	hypothetical protein	gene	hypothetical protein	chr2	15914329	15915022	+	downstream
28	LOC_Os08g16840	OsFBL45 - F-box domain and LRR containing protein, expressed	gene	OsFBL45 - F-box domain and LRR containing protein, expressed	chr8	10295776	10299735	-	downstream
28	LOC_Os09g15389	expressed protein	gene	expressed protein	chr9	9419103	9424292	-	downstream
28	LOC_Os04g56330	ABC transporter, ATP-binding protein, putative	gene	ABC transporter, ATP-binding protein, putative	chr4	33395202	33397231	+	downstream
28	LOC_Os11g18860	hypothetical protein	gene	hypothetical protein	chr11	10712803	10713171	-	downstream
28	LOC_Os05g23530	expressed protein	gene	expressed protein	chr5	13418300	13434680	+	downstream
28	LOC_Os11g24440	expressed protein	gene	expressed protein	chr11	13468377	13469156	-	downstream
28	LOC_Os07g19420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11487987	11489384	+	downstream
28	LOC_Os12g28730	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	16969093	16972039	+	downstream
28	LOC_Os03g40300	hypothetical protein	gene	hypothetical protein	chr3	22400924	22401653	+	downstream
28	LOC_Os02g21160	hypothetical protein	gene	hypothetical protein	chr2	12558782	12559030	-	downstream
28	LOC_Os08g19170	G-patch domain containing protein, expressed	gene	G-patch domain containing protein, expressed	chr8	11462121	11467811	-	downstream
28	LOC_Os11g10000	mTERF family protein, expressed	gene	mTERF family protein, expressed	chr11	5358938	5360708	-	downstream
28	LOC_Os06g31760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18444757	18445356	+	downstream
28	LOC_Os03g21600	expressed protein	gene	expressed protein	chr3	12333199	12336185	-	downstream
28	LOC_Os01g35930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19883209	19885307	+	downstream
28	LOC_Os08g08930	hypothetical protein	gene	hypothetical protein	chr8	5192892	5193308	+	downstream
28	LOC_Os11g19864	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr11	11431268	11440583	-	downstream
28	LOC_Os04g26530	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr4	15465555	15466816	-	downstream
28	LOC_Os12g14840	expressed protein	gene	expressed protein	chr12	8492220	8495385	-	downstream
28	LOC_Os11g37630	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	21742150	21746518	-	downstream
28	LOC_Os05g03000	inner membrane protein alx, putative, expressed	gene	inner membrane protein alx, putative, expressed	chr5	1126995	1132412	-	downstream
28	LOC_Os05g08930	chloroplast lumen common family protein, putative, expressed	gene	chloroplast lumen common family protein, putative, expressed	chr5	4938236	4940937	-	downstream
28	LOC_Os07g28720	expressed protein	gene	expressed protein	chr7	16814752	16815839	-	downstream
28	LOC_Os05g30960	hypothetical protein	gene	hypothetical protein	chr5	17917636	17918103	+	downstream
28	LOC_Os11g33934	hypothetical protein	gene	hypothetical protein	chr11	19354947	19355748	-	downstream
28	LOC_Os01g54810	lipase, putative, expressed	gene	lipase, putative, expressed	chr1	31523004	31526133	-	downstream
28	LOC_Os07g05530	hypothetical protein	gene	hypothetical protein	chr7	2579218	2580012	+	downstream
28	LOC_Os02g17920	glyoxalase family protein, putative, expressed	gene	glyoxalase family protein, putative, expressed	chr2	10378453	10380937	-	downstream
28	LOC_Os03g30170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17218202	17220876	+	downstream
28	LOC_Os09g02660	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr9	1167865	1174665	-	downstream
28	LOC_Os12g15280	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	8712553	8713062	+	downstream
28	LOC_Os04g44650	ferredoxin-thioredoxin reductase, variable chain, putative, expressed	gene	ferredoxin-thioredoxin reductase, variable chain, putative, expressed	chr4	26246251	26247121	-	downstream
28	LOC_Os02g20450	hypothetical protein	gene	hypothetical protein	chr2	12064009	12064783	+	downstream
28	LOC_Os12g22150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	12472574	12478469	+	downstream
28	LOC_Os04g02790	hypothetical protein	gene	hypothetical protein	chr4	1080211	1080522	-	downstream
28	LOC_Os02g22630	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	13485651	13488773	-	downstream
28	LOC_Os12g32560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	19624136	19625193	+	downstream
28	LOC_Os02g22800	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	13582299	13588851	-	downstream
28	LOC_Os11g26420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14669964	14670698	+	downstream
28	LOC_Os06g39820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23655251	23659992	+	downstream
28	LOC_Os04g05790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2967487	2969568	-	downstream
28	LOC_Os04g10180	hypothetical protein	gene	hypothetical protein	chr4	5501386	5502874	-	downstream
28	LOC_Os11g32800	hypothetical protein	gene	hypothetical protein	chr11	18909176	18909828	-	downstream
28	LOC_Os04g27960	B3 DNA binding domain containing protein	gene	B3 DNA binding domain containing protein	chr4	16333814	16337553	-	downstream
28	LOC_Os11g27450	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr11	15336244	15340245	+	downstream
28	LOC_Os02g28480	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	16835419	16837857	+	downstream
28	LOC_Os01g01312	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr1	150409	155500	+	downstream
28	LOC_Os09g04460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2370253	2378520	+	downstream
28	LOC_Os07g12940	hypothetical protein	gene	hypothetical protein	chr7	7424914	7425430	+	downstream
28	LOC_Os11g23790	expressed protein	gene	expressed protein	chr11	12996849	13003130	-	downstream
28	LOC_Os10g13710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7466845	7468334	+	downstream
28	LOC_Os08g13240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7867862	7869112	+	downstream
28	LOC_Os03g20680	late embryogenesis abundant protein 1, putative, expressed	gene	late embryogenesis abundant protein 1, putative, expressed	chr3	11697980	11699390	-	downstream
28	LOC_Os10g12730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7114685	7117394	+	downstream
28	LOC_Os07g47550	glucosyltransferase, putative, expressed	gene	glucosyltransferase, putative, expressed	chr7	28438741	28440463	-	downstream
28	LOC_Os01g40030	hypothetical protein	gene	hypothetical protein	chr1	22578431	22580769	-	downstream
28	LOC_Os04g34040	hypothetical protein	gene	hypothetical protein	chr4	20445664	20449397	-	downstream
28	LOC_Os10g13505	expressed protein	gene	expressed protein	chr10	7317281	7320536	-	downstream
28	LOC_Os05g19320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11225679	11226269	-	downstream
28	LOC_Os04g07930	hypothetical protein	gene	hypothetical protein	chr4	4226831	4227382	+	downstream
28	LOC_Os11g02490	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	770344	772659	-	downstream
28	LOC_Os05g44660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25910598	25912541	+	downstream
28	LOC_Os06g32000	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18597083	18600545	-	downstream
28	LOC_Os07g25790	hypothetical protein	gene	hypothetical protein	chr7	14816999	14817504	-	downstream
28	LOC_Os12g08580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4354378	4355340	-	downstream
28	LOC_Os06g29860	hypothetical protein	gene	hypothetical protein	chr6	17204774	17205986	+	downstream
28	LOC_Os12g24090	hypothetical protein	gene	hypothetical protein	chr12	13702410	13703495	-	downstream
28	LOC_Os02g22030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13101419	13104476	+	downstream
28	LOC_Os11g36660	hypothetical protein	gene	hypothetical protein	chr11	21168519	21169332	-	downstream
28	LOC_Os05g22740	hypothetical protein	gene	hypothetical protein	chr5	12842318	12843109	+	downstream
28	LOC_Os10g09370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5074801	5076474	-	downstream
28	LOC_Os03g23909	vegetative incompatibility protein HET-E-1, putative	gene	vegetative incompatibility protein HET-E-1, putative	chr3	13569721	13576074	+	downstream
28	LOC_Os08g01970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	618602	621411	-	downstream
28	LOC_Os10g01580	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	385264	386022	+	downstream
28	LOC_Os02g25400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14801180	14803305	-	downstream
28	LOC_Os12g01790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	477528	481911	+	downstream
28	LOC_Os04g16190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8784996	8787832	-	downstream
28	LOC_Os10g19914	hypothetical protein	gene	hypothetical protein	chr10	9908131	9908551	-	downstream
28	LOC_Os06g28600	hypothetical protein	gene	hypothetical protein	chr6	16275334	16277038	+	downstream
28	LOC_Os06g15120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8577722	8578476	-	downstream
28	LOC_Os02g24480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	14172703	14175148	+	downstream
28	LOC_Os10g26190	hypothetical protein	gene	hypothetical protein	chr10	13493059	13493418	+	downstream
28	LOC_Os08g21740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13020504	13022170	+	downstream
28	LOC_Os02g27560	hypothetical protein	gene	hypothetical protein	chr2	16315482	16316631	-	downstream
28	LOC_Os04g10320	hypothetical protein	gene	hypothetical protein	chr4	5566183	5568909	-	downstream
28	LOC_Os11g43800	PPR repeat domain containing protein, putative	gene	PPR repeat domain containing protein, putative	chr11	25984108	25988484	+	downstream
28	LOC_Os09g21860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13239701	13244215	-	downstream
28	LOC_Os04g30900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	18287942	18291536	+	downstream
28	LOC_Os09g11130	hypothetical protein	gene	hypothetical protein	chr9	6166523	6167856	+	downstream
28	LOC_Os11g11110	expressed protein	gene	expressed protein	chr11	6142551	6144293	-	downstream
28	LOC_Os05g28404	hypothetical protein	gene	hypothetical protein	chr5	16577874	16578320	-	downstream
28	LOC_Os05g04240	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr5	1931872	1934180	+	downstream
28	LOC_Os02g14380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	7899360	7900285	+	downstream
28	LOC_Os04g45880	hypothetical protein	gene	hypothetical protein	chr4	26978510	26978725	-	downstream
28	LOC_Os11g31660	expressed protein	gene	expressed protein	chr11	18049905	18054728	+	downstream
28	LOC_Os11g27940	hypothetical protein	gene	hypothetical protein	chr11	15609421	15610639	+	downstream
28	LOC_Os01g35850	Ras family domain containing protein	gene	Ras family domain containing protein	chr1	19850626	19853220	-	downstream
28	LOC_Os11g25420	hypothetical protein	gene	hypothetical protein	chr11	14029322	14029964	-	downstream
28	LOC_Os12g17960	hypothetical protein	gene	hypothetical protein	chr12	10321824	10322060	+	downstream
28	LOC_Os05g27020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	15654550	15657882	+	downstream
28	LOC_Os12g36010	hypothetical protein	gene	hypothetical protein	chr12	22009539	22009883	-	downstream
28	LOC_Os12g31290	hypothetical protein	gene	hypothetical protein	chr12	18802839	18804569	-	downstream
28	LOC_Os05g07100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3745358	3746425	+	downstream
28	LOC_Os07g22710	CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	gene	CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	chr7	12793967	12802575	-	downstream
28	LOC_Os02g29600	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	17603883	17608320	-	downstream
28	LOC_Os05g09360	glycine-rich protein, putative, expressed	gene	glycine-rich protein, putative, expressed	chr5	5238234	5250014	+	downstream
28	LOC_Os06g13240	BURP domain containing protein	gene	BURP domain containing protein	chr6	7277366	7281976	+	downstream
28	LOC_Os01g11870	hypothetical protein	gene	hypothetical protein	chr1	6424100	6426959	+	downstream
28	LOC_Os02g37450	hypothetical protein	gene	hypothetical protein	chr2	22604814	22606214	-	downstream
28	LOC_Os10g10880	expressed protein	gene	expressed protein	chr10	6041029	6044537	+	downstream
28	LOC_Os05g44430	hypothetical protein	gene	hypothetical protein	chr5	25794797	25796501	+	downstream
28	LOC_Os04g01630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	424513	427803	-	downstream
28	LOC_Os04g54759	expressed protein	gene	expressed protein	chr4	32371765	32380296	-	downstream
28	LOC_Os09g02860	hypothetical protein	gene	hypothetical protein	chr9	1340563	1341235	+	downstream
28	LOC_Os11g31140	hypothetical protein	gene	hypothetical protein	chr11	17661888	17663669	-	downstream
28	LOC_Os06g33110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19273319	19275261	+	downstream
28	LOC_Os01g28310	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	gene	transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24	chr1	15855917	15859294	-	downstream
28	LOC_Os01g46090	GDSL-like lipase/acylhydrolase, putative	gene	GDSL-like lipase/acylhydrolase, putative	chr1	26202171	26205872	+	downstream
28	LOC_Os01g60130	hypothetical protein	gene	hypothetical protein	chr1	34784358	34785367	-	downstream
28	LOC_Os03g04400	heat shock protein DnaJ, putative, expressed	gene	heat shock protein DnaJ, putative, expressed	chr3	2017672	2021076	-	downstream
28	LOC_Os07g24900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	14157320	14159361	-	downstream
28	LOC_Os01g57360	acyltransferase, putative, expressed	gene	acyltransferase, putative, expressed	chr1	33153232	33157276	-	downstream
28	LOC_Os08g27340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16685198	16688275	+	downstream
28	LOC_Os01g22230	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr1	12498897	12503189	+	downstream
28	LOC_Os11g24860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	13707691	13710996	+	downstream
28	LOC_Os01g01470	no apical meristem protein, putative, expressed	gene	no apical meristem protein, putative, expressed	chr1	240641	242468	+	downstream
28	LOC_Os01g31040	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	16975660	16978058	+	downstream
28	LOC_Os11g24120	expressed protein	gene	expressed protein	chr11	13243590	13246326	-	downstream
28	LOC_Os11g21860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12089112	12090816	+	downstream
28	LOC_Os11g06130	PHD-finger family protein, expressed	gene	PHD-finger family protein, expressed	chr11	2905301	2914171	-	downstream
28	LOC_Os12g13850	hypothetical protein	gene	hypothetical protein	chr12	7831499	7832549	+	downstream
28	LOC_Os05g46900	hypothetical protein	gene	hypothetical protein	chr5	27081521	27081721	+	downstream
28	LOC_Os12g12260	diacylglycerol kinase 1, putative, expressed	gene	diacylglycerol kinase 1, putative, expressed	chr12	6728516	6733263	-	downstream
28	LOC_Os10g26760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	13925229	13930745	+	downstream
28	LOC_Os03g24480	hypothetical protein	gene	hypothetical protein	chr3	13951940	13953687	+	downstream
28	LOC_Os02g26404	expressed protein	gene	expressed protein	chr2	15504563	15506703	+	downstream
28	LOC_Os06g34000	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	19799870	19802294	-	downstream
28	LOC_Os03g54010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30957984	30958744	-	downstream
28	LOC_Os09g15470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	9464788	9470500	-	downstream
28	LOC_Os03g32790	expressed protein	gene	expressed protein	chr3	18767370	18769217	+	downstream
28	LOC_Os01g34270	OsFBX12 - F-box domain containing protein	gene	OsFBX12 - F-box domain containing protein	chr1	18891694	18892725	-	downstream
28	LOC_Os05g03660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1583342	1585549	-	downstream
28	LOC_Os09g02580	hypothetical protein	gene	hypothetical protein	chr9	1074066	1074317	-	downstream
28	LOC_Os05g19060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11064325	11065871	-	downstream
28	LOC_Os03g32526	tRNA-splicing endonuclease positive effector-related, putative, expressed	gene	tRNA-splicing endonuclease positive effector-related, putative, expressed	chr3	18601509	18607482	-	downstream
28	LOC_Os05g03510	hypothetical protein	gene	hypothetical protein	chr5	1484638	1485354	+	downstream
28	LOC_Os01g65970	transcription factor HBP-1b, putative	gene	transcription factor HBP-1b, putative	chr1	38290767	38291578	-	downstream
28	LOC_Os08g39510	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	24996784	24997766	+	downstream
28	LOC_Os10g01260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	168495	170573	-	downstream
28	LOC_Os04g19970	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	11123464	11124269	-	downstream
28	LOC_Os04g05530	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	2789792	2793027	-	downstream
28	LOC_Os03g32870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18802846	18804096	-	downstream
28	LOC_Os10g03200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1351617	1352929	-	downstream
28	LOC_Os05g19990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11684860	11688322	+	downstream
28	LOC_Os05g37610	hypothetical protein	gene	hypothetical protein	chr5	21950012	21950542	+	downstream
28	LOC_Os11g04480	peflin, putative, expressed	gene	peflin, putative, expressed	chr11	1867962	1871288	-	downstream
28	LOC_Os02g46810	amino acid transporter, putative	gene	amino acid transporter, putative	chr2	28568142	28568723	-	downstream
28	LOC_Os05g00994	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	13697	14071	+	downstream
28	LOC_Os06g33210	UAA transporter family domain containing protein, expressed	gene	UAA transporter family domain containing protein, expressed	chr6	19337480	19343726	-	downstream
28	LOC_Os05g14230	hypothetical protein	gene	hypothetical protein	chr5	7980881	7981135	+	downstream
28	LOC_Os01g65030	S-locus-specific glycoprotein precursor, putative, expressed	gene	S-locus-specific glycoprotein precursor, putative, expressed	chr1	37744483	37747561	-	downstream
28	LOC_Os12g30580	hypothetical protein	gene	hypothetical protein	chr12	18335742	18336474	+	downstream
28	LOC_Os11g03280	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	1209589	1213220	-	downstream
28	LOC_Os01g01130	snurportin-1, putative, expressed	gene	snurportin-1, putative, expressed	chr1	62244	65302	-	downstream
28	LOC_Os03g52594	CCR4-NOT transcription factor, putative, expressed	gene	CCR4-NOT transcription factor, putative, expressed	chr3	30150022	30166976	-	downstream
28	LOC_Os07g24710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14056864	14057298	-	downstream
28	LOC_Os05g13600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	7541367	7543502	+	downstream
28	LOC_Os02g24430	expressed protein	gene	expressed protein	chr2	14155449	14165912	+	downstream
28	LOC_Os07g30080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	17736068	17736945	-	downstream
28	LOC_Os06g21150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	12215514	12220517	-	downstream
28	LOC_Os03g16180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8924090	8925781	+	downstream
28	LOC_Os02g24040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	13925683	13925937	+	downstream
28	LOC_Os11g32630	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	18781347	18783216	-	downstream
28	LOC_Os01g74500	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	43142673	43145745	+	downstream
28	LOC_Os12g23240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13139236	13143924	-	downstream
28	LOC_Os04g29360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	17274873	17277203	-	downstream
28	LOC_Os04g04190	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	1944947	1948277	+	downstream
28	LOC_Os01g32750	TATA binding protein-associated factor, putative, expressed	gene	TATA binding protein-associated factor, putative, expressed	chr1	17959819	17967556	-	downstream
28	LOC_Os01g44140	expressed protein	gene	expressed protein	chr1	25299930	25301899	-	downstream
28	LOC_Os11g46010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27378878	27381850	-	downstream
28	LOC_Os08g06050	OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed	gene	OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed	chr8	3300042	3303260	-	downstream
28	LOC_Os02g25080	expressed protein	gene	expressed protein	chr2	14551212	14553253	+	downstream
28	LOC_Os07g26010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14921458	14922325	-	downstream
28	LOC_Os04g28420	peptidyl-prolyl isomerase, putative, expressed	gene	peptidyl-prolyl isomerase, putative, expressed	chr4	16641891	16646017	-	downstream
28	LOC_Os11g34810	expressed protein	gene	expressed protein	chr11	19924175	19926151	-	downstream
28	LOC_Os03g39730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	22102257	22103617	-	downstream
28	LOC_Os03g38745	serine/arginine repetitive matrix protein 1, putative, expressed	gene	serine/arginine repetitive matrix protein 1, putative, expressed	chr3	21518619	21520587	-	downstream
28	LOC_Os01g02480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	799898	800654	+	downstream
28	LOC_Os02g20880	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	12348939	12349757	+	downstream
28	LOC_Os08g36270	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	22854467	22854739	+	downstream
28	LOC_Os06g50000	LYR motif containing protein, putative, expressed	gene	LYR motif containing protein, putative, expressed	chr6	30278365	30280772	-	downstream
28	LOC_Os05g51000	expressed protein	gene	expressed protein	chr5	29208593	29212153	-	downstream
28	LOC_Os05g30820	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr5	17825020	17828458	-	downstream
28	LOC_Os08g44680	photosystem I reaction center subunit II, chloroplast precursor, putative, expressed	gene	photosystem I reaction center subunit II, chloroplast precursor, putative, expressed	chr8	28080579	28081584	-	downstream
28	LOC_Os11g40300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	23561866	23564194	-	downstream
28	LOC_Os03g13770	tubulin, putative, expressed	gene	tubulin, putative, expressed	chr3	7452551	7456734	-	downstream
28	LOC_Os06g50620	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	30637239	30638755	-	downstream
28	LOC_Os12g15110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8618830	8621502	+	downstream
28	LOC_Os09g30498	hypothetical protein	gene	hypothetical protein	chr9	18633082	18634910	+	downstream
28	LOC_Os09g38580	cyclic nucleotide-gated ion channel, putative, expressed	gene	cyclic nucleotide-gated ion channel, putative, expressed	chr9	22192244	22196706	+	downstream
28	LOC_Os12g01610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	365357	365983	+	downstream
28	LOC_Os07g22730	AP2 domain containing protein, expressed	gene	AP2 domain containing protein, expressed	chr7	12825366	12826324	-	downstream
28	LOC_Os12g23900	hypothetical protein	gene	hypothetical protein	chr12	13584799	13585449	-	downstream
28	LOC_Os09g02190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	863748	867401	-	downstream
28	LOC_Os04g14654	Sec1 family transport protein, putative, expressed	gene	Sec1 family transport protein, putative, expressed	chr4	8211787	8228558	-	downstream
28	LOC_Os11g41570	OsFBX428 - F-box domain containing protein	gene	OsFBX428 - F-box domain containing protein	chr11	24470627	24473754	-	downstream
28	LOC_Os04g47912	expressed protein	gene	expressed protein	chr4	28304264	28309280	-	downstream
28	LOC_Os04g32004	hypothetical protein	gene	hypothetical protein	chr4	18992784	18993068	+	downstream
28	LOC_Os11g16330	expressed protein	gene	expressed protein	chr11	9000942	9005329	-	downstream
28	LOC_Os04g48720	hypothetical protein	gene	hypothetical protein	chr4	28870874	28872177	+	downstream
28	LOC_Os12g08650	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	4389614	4390265	-	downstream
28	LOC_Os05g50030	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	28619464	28621467	+	downstream
28	LOC_Os11g23160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12862002	12864089	-	downstream
28	LOC_Os03g29200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	16602088	16602762	+	downstream
28	LOC_Os01g21410	expressed protein	gene	expressed protein	chr1	11952316	11954423	-	downstream
28	LOC_Os10g21500	hypothetical protein	gene	hypothetical protein	chr10	10939972	10940247	-	downstream
28	LOC_Os07g28220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	16481403	16482251	+	downstream
28	LOC_Os07g17420	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	10283147	10285894	-	downstream
28	LOC_Os01g50500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	28997866	29002440	-	downstream
28	LOC_Os06g08740	expressed protein	gene	expressed protein	chr6	4369967	4375384	-	downstream
28	LOC_Os03g52540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	30134993	30137896	+	downstream
28	LOC_Os10g01480	Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed	gene	Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed	chr10	300771	307113	-	downstream
28	LOC_Os11g30750	hypothetical protein	gene	hypothetical protein	chr11	17436475	17436819	-	downstream
28	LOC_Os08g32170	oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed	gene	oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed	chr8	19951948	19953518	-	downstream
28	LOC_Os10g26070	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr10	13430621	13432586	-	downstream
28	LOC_Os08g08890	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	5170694	5173029	-	downstream
28	LOC_Os08g10520	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	6176868	6178022	+	downstream
28	LOC_Os09g38890	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	22331328	22333002	+	downstream
28	LOC_Os03g55850	cold acclimation protein WCOR413, putative, expressed	gene	cold acclimation protein WCOR413, putative, expressed	chr3	31783354	31786233	+	downstream
28	LOC_Os04g12570	hypothetical protein	gene	hypothetical protein	chr4	6954495	6954887	-	downstream
28	LOC_Os01g06800	hypothetical protein	gene	hypothetical protein	chr1	3228084	3228782	-	downstream
28	LOC_Os03g37030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20528479	20528946	+	downstream
28	LOC_Os02g43320	hypothetical protein	gene	hypothetical protein	chr2	26129611	26129890	-	downstream
28	LOC_Os07g40340	hypothetical protein	gene	hypothetical protein	chr7	24193629	24193997	-	downstream
28	LOC_Os02g24642	photosystem II reaction center protein K precursor, putative, expressed	gene	photosystem II reaction center protein K precursor, putative, expressed	chr2	14283076	14283720	-	downstream
28	LOC_Os04g28180	ribosomal protein, putative, expressed	gene	ribosomal protein, putative, expressed	chr4	16473741	16476426	-	downstream
28	LOC_Os04g26140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	15230261	15239198	+	downstream
28	LOC_Os04g34950	hypothetical protein	gene	hypothetical protein	chr4	21067026	21069995	-	downstream
28	LOC_Os07g12959	unknown	gene	unknown	chr7	7436850	7438342	-	downstream
28	LOC_Os03g40400	interferon-induced, double-stranded RNA-activated protein kinase, putative	gene	interferon-induced, double-stranded RNA-activated protein kinase, putative	chr3	22444319	22446222	+	downstream
28	LOC_Os01g21370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	11939913	11941910	-	downstream
28	LOC_Os12g26300	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	15345414	15346258	+	downstream
28	LOC_Os03g23120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13367839	13369558	+	downstream
28	LOC_Os03g29510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	16815205	16816844	-	downstream
28	LOC_Os01g18560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10454206	10455055	-	downstream
28	LOC_Os03g31070	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr3	17701375	17708831	-	downstream
28	LOC_Os01g35340	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	19550550	19550783	-	downstream
28	LOC_Os02g12210	hypothetical protein	gene	hypothetical protein	chr2	6344742	6347227	-	downstream
28	LOC_Os07g28340	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	16543750	16545008	+	downstream
28	LOC_Os06g25330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14835230	14837287	+	downstream
28	LOC_Os10g13670	Zinc finger, C3HC4 type domain containing protein, expressed	gene	Zinc finger, C3HC4 type domain containing protein, expressed	chr10	7429912	7435232	-	downstream
28	LOC_Os08g24850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	15028870	15029590	+	downstream
28	LOC_Os08g20310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12192439	12194692	-	downstream
28	LOC_Os04g08620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	4678571	4679370	+	downstream
28	LOC_Os04g34550	hypothetical protein	gene	hypothetical protein	chr4	20737868	20740921	+	downstream
28	LOC_Os08g38160	cytokinin-O-glucosyltransferase, putative	gene	cytokinin-O-glucosyltransferase, putative	chr8	24165073	24166464	-	downstream
28	LOC_Os06g15510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	8797638	8801935	+	downstream
28	LOC_Os01g54230	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	31197085	31197877	+	downstream
28	LOC_Os03g36684	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20340783	20346746	-	downstream
28	LOC_Os06g33880	expressed protein	gene	expressed protein	chr6	19700311	19701381	+	downstream
28	LOC_Os08g08670	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	5016158	5020465	-	downstream
28	LOC_Os08g22340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13459856	13465363	+	downstream
28	LOC_Os04g14320	hypothetical protein	gene	hypothetical protein	chr4	8019530	8020581	-	downstream
28	LOC_Os10g09880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5367764	5369467	+	downstream
28	LOC_Os04g09830	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	5272802	5276559	+	downstream
28	LOC_Os05g46070	hAT dimerisation domain containing protein	gene	hAT dimerisation domain containing protein	chr5	26658461	26659247	-	downstream
28	LOC_Os08g14460	expressed protein	gene	expressed protein	chr8	8679812	8685516	-	downstream
28	LOC_Os01g53360	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	30656363	30656836	-	downstream
28	LOC_Os03g39660	hypothetical protein	gene	hypothetical protein	chr3	22055271	22056972	+	downstream
28	LOC_Os10g11384	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	6323957	6328885	-	downstream
28	LOC_Os11g13900	hypothetical protein	gene	hypothetical protein	chr11	7674431	7675635	-	downstream
28	LOC_Os05g15380	lipase class 3, putative	gene	lipase class 3, putative	chr5	8705183	8706312	+	downstream
28	LOC_Os04g14950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8398026	8400974	-	downstream
28	LOC_Os11g18800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	10664834	10665886	-	downstream
28	LOC_Os07g49160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29440245	29443133	+	downstream
28	LOC_Os04g22970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13024665	13027687	-	downstream
28	LOC_Os04g45470	vacuolar-processing enzyme precursor, putative, expressed	gene	vacuolar-processing enzyme precursor, putative, expressed	chr4	26718739	26723552	-	downstream
28	LOC_Os08g25624	phosphate/phosphate translocator, putative, expressed	gene	phosphate/phosphate translocator, putative, expressed	chr8	15589545	15596404	+	downstream
28	LOC_Os01g57780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	33416101	33419318	+	downstream
28	LOC_Os12g03760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	1527561	1531654	-	downstream
28	LOC_Os07g26790	hypothetical protein	gene	hypothetical protein	chr7	15484883	15485310	-	downstream
28	LOC_Os09g26180	transcription initiation factor TFIID subunit 10, putative, expressed	gene	transcription initiation factor TFIID subunit 10, putative, expressed	chr9	15780079	15783884	-	downstream
28	LOC_Os07g28800	heat shock protein DnaJ, putative	gene	heat shock protein DnaJ, putative	chr7	16862286	16866129	-	downstream
28	LOC_Os03g49900	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr3	28441867	28449465	-	downstream
28	LOC_Os07g37045	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	22196484	22197218	-	downstream
28	LOC_Os06g36940	expressed protein	gene	expressed protein	chr6	21762121	21764047	-	downstream
28	LOC_Os09g08850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4667787	4669896	+	downstream
28	LOC_Os03g33710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19273849	19275075	-	downstream
28	LOC_Os01g09384	ankyrin repeat domain containing protein, putative, expressed	gene	ankyrin repeat domain containing protein, putative, expressed	chr1	4767735	4781706	-	downstream
28	LOC_Os02g34790	receptor-like protein kinase 5 precursor, putative, expressed	gene	receptor-like protein kinase 5 precursor, putative, expressed	chr2	20851176	20855475	-	downstream
28	LOC_Os11g24640	hypothetical protein	gene	hypothetical protein	chr11	13591985	13593866	-	downstream
28	LOC_Os02g17740	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	10241914	10245611	-	downstream
28	LOC_Os12g01300	hypothetical protein	gene	hypothetical protein	chr12	173691	174119	-	downstream
28	LOC_Os02g43400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	26186104	26189068	-	downstream
28	LOC_Os03g04860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	2317721	2323681	+	downstream
28	LOC_Os02g43430	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr2	26203100	26207138	-	downstream
28	LOC_Os01g19724	unknown	gene	unknown	chr1	11190808	11191318	+	downstream
28	LOC_Os11g22730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	12613560	12615122	+	downstream
28	LOC_Os11g06390	actin, putative, expressed	gene	actin, putative, expressed	chr11	3074762	3078115	+	downstream
28	LOC_Os10g24810	cytidylyltransferase domain containing protein, expressed	gene	cytidylyltransferase domain containing protein, expressed	chr10	12684213	12688401	-	downstream
28	LOC_Os08g29530	double-stranded RNA binding motif containing protein, expressed	gene	double-stranded RNA binding motif containing protein, expressed	chr8	18100548	18105647	-	downstream
28	LOC_Os10g29570	late embryogenesis abundant protein D-34, putative, expressed	gene	late embryogenesis abundant protein D-34, putative, expressed	chr10	15298544	15299959	+	downstream
28	LOC_Os01g43990	hypothetical protein	gene	hypothetical protein	chr1	25210001	25211258	+	downstream
28	LOC_Os04g54640	peptidase, cysteine peptidase active site, putative, expressed	gene	peptidase, cysteine peptidase active site, putative, expressed	chr4	32297905	32300446	-	downstream
28	LOC_Os11g28520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15959286	15959927	+	downstream
28	LOC_Os04g39890	hypothetical protein	gene	hypothetical protein	chr4	23571128	23571370	-	downstream
28	LOC_Os04g26640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	15531714	15532581	-	downstream
28	LOC_Os01g34164	unknown	gene	unknown	chr1	18839542	18839752	+	downstream
28	LOC_Os10g13380	hypothetical protein	gene	hypothetical protein	chr10	7242909	7243492	-	downstream
28	LOC_Os12g33750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	20336407	20336790	+	downstream
28	LOC_Os12g35830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21802882	21803775	-	downstream
28	LOC_Os08g12070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7110195	7111550	-	downstream
28	LOC_Os05g19430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11285745	11288468	+	downstream
28	LOC_Os11g20170	expressed protein	gene	expressed protein	chr11	11655542	11657015	+	downstream
28	LOC_Os05g39290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22975612	22976514	-	downstream
28	LOC_Os01g02530	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	823624	829778	-	downstream
28	LOC_Os08g09350	gar2, putative, expressed	gene	gar2, putative, expressed	chr8	5421261	5425677	-	downstream
28	LOC_Os01g27440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	15315869	15322172	-	downstream
28	LOC_Os05g03720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1625063	1630704	-	downstream
28	LOC_Os02g27290	hypothetical protein	gene	hypothetical protein	chr2	16068149	16068750	+	downstream
28	LOC_Os06g25700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15012323	15013186	-	downstream
28	LOC_Os09g15400	inositol monophosphatase family protein, putative	gene	inositol monophosphatase family protein, putative	chr9	9430092	9431665	+	downstream
28	LOC_Os12g09390	hypothetical protein	gene	hypothetical protein	chr12	4921841	4923598	+	downstream
28	LOC_Os05g40460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23703916	23706297	-	downstream
28	LOC_Os05g14710	hypothetical protein	gene	hypothetical protein	chr5	8358395	8359018	+	downstream
28	LOC_Os07g49410	uncharacterized ACR, YagE family COG1723 containing protein, expressed	gene	uncharacterized ACR, YagE family COG1723 containing protein, expressed	chr7	29588764	29592820	-	downstream
28	LOC_Os05g16590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9404448	9406029	-	downstream
28	LOC_Os08g31440	expressed protein	gene	expressed protein	chr8	19443106	19444589	+	downstream
28	LOC_Os10g26820	hypothetical protein	gene	hypothetical protein	chr10	14003628	14004810	-	downstream
28	LOC_Os01g31780	hypothetical protein	gene	hypothetical protein	chr1	17412437	17412773	+	downstream
28	LOC_Os08g21820	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13057250	13058404	-	downstream
28	LOC_Os07g35250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21098465	21100901	-	downstream
28	LOC_Os02g16330	xa1, putative	gene	xa1, putative	chr2	9284786	9290815	+	downstream
28	LOC_Os02g33430	E2F family transcription factor protein, putative, expressed	gene	E2F family transcription factor protein, putative, expressed	chr2	19862331	19867439	-	downstream
28	LOC_Os07g29510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	17323339	17324164	+	downstream
28	LOC_Os06g15520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8802581	8803516	-	downstream
28	LOC_Os01g27820	hypothetical protein	gene	hypothetical protein	chr1	15533175	15534701	-	downstream
28	LOC_Os02g10720	expressed protein	gene	expressed protein	chr2	5640774	5644630	-	downstream
28	LOC_Os03g12260	cytochrome P450 protein, putative, expressed	gene	cytochrome P450 protein, putative, expressed	chr3	6442453	6444473	-	downstream
28	LOC_Os02g19900	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	11709902	11710459	-	downstream
28	LOC_Os05g11910	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr5	6787618	6791533	+	downstream
28	LOC_Os09g27120	hypothetical protein	gene	hypothetical protein	chr9	16494698	16495444	-	downstream
28	LOC_Os02g29570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17582204	17588100	-	downstream
28	LOC_Os09g02450	hypothetical protein	gene	hypothetical protein	chr9	1014115	1014456	+	downstream
28	LOC_Os04g14450	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr4	8080452	8085986	-	downstream
28	LOC_Os11g24300	exostosin, putative	gene	exostosin, putative	chr11	13380956	13385076	+	downstream
28	LOC_Os11g20790	adenylate kinase, putative, expressed	gene	adenylate kinase, putative, expressed	chr11	12028946	12033855	+	downstream
28	LOC_Os12g01260	protein transport protein Sec61 subunit beta, putative, expressed	gene	protein transport protein Sec61 subunit beta, putative, expressed	chr12	155368	156071	-	downstream
28	LOC_Os05g31300	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr5	18137576	18138902	+	downstream
28	LOC_Os09g26220	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15842391	15844601	-	downstream
28	LOC_Os12g21570	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr12	12122597	12126049	+	downstream
28	LOC_Os05g19940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11636916	11637722	+	downstream
28	LOC_Os02g55200	expressed protein	gene	expressed protein	chr2	33801136	33809546	-	downstream
28	LOC_Os02g26170	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	15362388	15362723	-	downstream
28	LOC_Os12g23720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13451160	13452318	-	downstream
28	LOC_Os01g71570	hypothetical protein	gene	hypothetical protein	chr1	41456227	41458853	+	downstream
28	LOC_Os12g21798	40S ribosomal protein S3a, putative, expressed	gene	40S ribosomal protein S3a, putative, expressed	chr12	12267718	12271708	-	downstream
28	LOC_Os07g24200	hypothetical protein	gene	hypothetical protein	chr7	13767263	13767724	-	downstream
28	LOC_Os08g40460	BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain	gene	BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain	chr8	25597065	25598421	-	downstream
28	LOC_Os05g52080	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	29848703	29849200	+	downstream
28	LOC_Os02g02410	DnaK family protein, putative, expressed	gene	DnaK family protein, putative, expressed	chr2	838717	842672	-	downstream
28	LOC_Os05g12350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	7094668	7099348	-	downstream
28	LOC_Os03g40860	hypothetical protein	gene	hypothetical protein	chr3	22720410	22720667	-	downstream
28	LOC_Os02g16500	expressed protein	gene	expressed protein	chr2	9417103	9418631	-	downstream
28	LOC_Os02g16580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	9475114	9477681	+	downstream
28	LOC_Os12g28270	amidohydrolase, putative, expressed	gene	amidohydrolase, putative, expressed	chr12	16699510	16706874	-	downstream
28	LOC_Os06g22470	hypothetical protein	gene	hypothetical protein	chr6	13060316	13061207	-	downstream
28	LOC_Os07g06940	valyl-tRNA synthetase, putative, expressed	gene	valyl-tRNA synthetase, putative, expressed	chr7	3393840	3399180	+	downstream
28	LOC_Os03g27710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15882171	15886639	+	downstream
28	LOC_Os03g40110	nop14-like family protein, expressed	gene	nop14-like family protein, expressed	chr3	22284190	22291069	-	downstream
28	LOC_Os01g24520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13822915	13824266	-	downstream
28	LOC_Os02g24720	LTPL21 - Protease inhibitor/seed storage/LTP family protein precursor	gene	LTPL21 - Protease inhibitor/seed storage/LTP family protein precursor	chr2	14331198	14333118	+	downstream
28	LOC_Os01g64930	expressed protein	gene	expressed protein	chr1	37689257	37692346	+	downstream
28	LOC_Os09g37210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	21473144	21476460	+	downstream
28	LOC_Os08g30250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	18589878	18593616	+	downstream
28	LOC_Os07g22230	hypothetical protein	gene	hypothetical protein	chr7	12449552	12449824	-	downstream
28	LOC_Os01g50230	hypothetical protein	gene	hypothetical protein	chr1	28859512	28861922	-	downstream
28	LOC_Os08g35250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22239217	22241775	+	downstream
28	LOC_Os10g30460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15759507	15760614	-	downstream
28	LOC_Os11g43070	hypothetical protein	gene	hypothetical protein	chr11	25514753	25515048	-	downstream
28	LOC_Os01g25770	hypothetical protein	gene	hypothetical protein	chr1	14604148	14604944	-	downstream
28	LOC_Os07g23260	hypothetical protein	gene	hypothetical protein	chr7	13103731	13104948	-	downstream
28	LOC_Os09g15910	hypothetical protein	gene	hypothetical protein	chr9	9717101	9717337	-	downstream
28	LOC_Os02g32210	hypothetical protein	gene	hypothetical protein	chr2	19020648	19026474	+	downstream
28	LOC_Os09g03000	hypothetical protein	gene	hypothetical protein	chr9	1408724	1409494	-	downstream
28	LOC_Os04g48614	unknown	gene	unknown	chr4	28788715	28789414	-	downstream
28	LOC_Os06g45184	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr6	27318474	27321665	-	downstream
28	LOC_Os01g50790	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	29173452	29175404	+	downstream
28	LOC_Os01g28940	hypothetical protein	gene	hypothetical protein	chr1	16209909	16210226	-	downstream
28	LOC_Os09g04850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	2579306	2581998	-	downstream
28	LOC_Os02g58760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	35891145	35892771	+	downstream
28	LOC_Os02g20760	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr2	12263988	12265988	-	downstream
28	LOC_Os11g22090	hypothetical protein	gene	hypothetical protein	chr11	12222121	12222672	-	downstream
28	LOC_Os08g20240	hypothetical protein	gene	hypothetical protein	chr8	12146286	12147556	-	downstream
28	LOC_Os05g10590	expressed protein	gene	expressed protein	chr5	5763711	5767435	+	downstream
28	LOC_Os06g15040	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8523137	8523598	-	downstream
28	LOC_Os02g22190	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr2	13223107	13227348	-	downstream
28	LOC_Os01g29690	hypothetical protein	gene	hypothetical protein	chr1	16635911	16636413	+	downstream
28	LOC_Os09g16470	hypothetical protein	gene	hypothetical protein	chr9	10091551	10092201	-	downstream
28	LOC_Os02g18850	OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed	gene	OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed	chr2	10999886	11004647	-	downstream
28	LOC_Os03g52090	calcium-transporting ATPase 3, endoplasmic reticulum-type, putative	gene	calcium-transporting ATPase 3, endoplasmic reticulum-type, putative	chr3	29882993	29903956	-	downstream
28	LOC_Os02g05199	expressed protein	gene	expressed protein	chr2	2486463	2488965	+	downstream
28	LOC_Os06g07660	myb-like DNA-binding domain, SHAQKYF class family protein	gene	myb-like DNA-binding domain, SHAQKYF class family protein	chr6	3706187	3710819	-	downstream
28	LOC_Os01g19040	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	10763907	10771237	+	downstream
28	LOC_Os05g40870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23903324	23908966	-	downstream
28	LOC_Os04g13220	ABC transporter family protein, putative, expressed	gene	ABC transporter family protein, putative, expressed	chr4	7312502	7321058	-	downstream
28	LOC_Os04g04290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2002565	2004655	-	downstream
28	LOC_Os06g31600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18372466	18373537	+	downstream
28	LOC_Os06g12740	expressed protein	gene	expressed protein	chr6	6952696	6955089	-	downstream
28	LOC_Os05g02260	expressed protein	gene	expressed protein	chr5	719132	721868	-	downstream
28	LOC_Os02g43510	GDP-L-fucose synthase 1, putative	gene	GDP-L-fucose synthase 1, putative	chr2	26247149	26247875	-	downstream
28	LOC_Os03g47584	hypothetical protein	gene	hypothetical protein	chr3	26918699	26919442	-	downstream
28	LOC_Os01g13640	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	7647657	7649004	+	downstream
28	LOC_Os02g14340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7869071	7871088	-	downstream
28	LOC_Os01g50430	hypothetical protein	gene	hypothetical protein	chr1	28951137	28952759	+	downstream
28	LOC_Os10g02940	hypothetical protein	gene	hypothetical protein	chr10	1213152	1213840	-	downstream
28	LOC_Os07g39040	hypothetical protein	gene	hypothetical protein	chr7	23405640	23407547	-	downstream
28	LOC_Os09g16070	expressed protein	gene	expressed protein	chr9	9809122	9809503	+	downstream
28	LOC_Os01g61000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35290485	35293720	-	downstream
28	LOC_Os11g23220	myosin, putative, expressed	gene	myosin, putative, expressed	chr11	12914256	12915819	-	downstream
28	LOC_Os02g01940	transcription factor jumonji, putative	gene	transcription factor jumonji, putative	chr2	509377	517148	-	downstream
28	LOC_Os07g31970	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	19010751	19017328	+	downstream
28	LOC_Os05g06028	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3023484	3024029	-	downstream
28	LOC_Os02g18200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10569001	10571742	+	downstream
28	LOC_Os03g33120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18949126	18950213	-	downstream
28	LOC_Os09g09330	expressed protein	gene	expressed protein	chr9	4991062	4996394	-	downstream
28	LOC_Os10g19050	hypothetical protein	gene	hypothetical protein	chr10	9628889	9631139	-	downstream
28	LOC_Os08g34220	omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed	gene	omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed	chr8	21448249	21453256	-	downstream
28	LOC_Os12g15690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8963451	8965639	+	downstream
28	LOC_Os12g31140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	18717638	18720970	+	downstream
28	LOC_Os06g47070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	28537704	28538273	+	downstream
28	LOC_Os05g35880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	21218536	21222234	-	downstream
28	LOC_Os10g42950	cyclin-dependent kinase E-1, putative, expressed	gene	cyclin-dependent kinase E-1, putative, expressed	chr10	23077202	23081732	-	downstream
28	LOC_Os02g22650	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr2	13495407	13498719	+	downstream
28	LOC_Os07g22190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12386350	12388454	+	downstream
28	LOC_Os08g01090	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr8	62574	66839	-	downstream
28	LOC_Os02g34610	expressed protein	gene	expressed protein	chr2	20747040	20747552	-	downstream
28	LOC_Os02g39100	fasciated ear2, putative, expressed	gene	fasciated ear2, putative, expressed	chr2	23606133	23608650	-	downstream
28	LOC_Os11g25470	hypothetical protein	gene	hypothetical protein	chr11	14053230	14054086	-	downstream
28	LOC_Os11g34330	hypothetical protein	gene	hypothetical protein	chr11	19659619	19660382	-	downstream
28	LOC_Os08g14560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8751760	8754947	-	downstream
28	LOC_Os01g53910	dehydrogenase, putative, expressed	gene	dehydrogenase, putative, expressed	chr1	30996941	30998410	-	downstream
28	LOC_Os07g49500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29643205	29648934	-	downstream
28	LOC_Os12g10290	hypothetical protein	gene	hypothetical protein	chr12	5439409	5439792	-	downstream
28	LOC_Os06g19340	hypothetical protein	gene	hypothetical protein	chr6	11001120	11003256	-	downstream
28	LOC_Os01g54200	unknown	gene	unknown	chr1	31169485	31169669	-	downstream
28	LOC_Os05g24750	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr5	14293745	14294501	-	downstream
28	LOC_Os05g14350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8072764	8076101	-	downstream
28	LOC_Os01g71150	hypothetical protein	gene	hypothetical protein	chr1	41171351	41171911	-	downstream
28	LOC_Os02g54320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	33300722	33301896	-	downstream
28	LOC_Os10g32100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	16785500	16786120	-	downstream
28	LOC_Os04g21310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12006801	12012956	-	downstream
28	LOC_Os12g08300	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	4222873	4224915	+	downstream
28	LOC_Os03g23790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	13483867	13485753	+	downstream
28	LOC_Os02g16450	expressed protein	gene	expressed protein	chr2	9390821	9393827	-	downstream
28	LOC_Os03g42284	hypothetical protein	gene	hypothetical protein	chr3	23528235	23528776	-	downstream
28	LOC_Os10g07350	hypothetical protein	gene	hypothetical protein	chr10	3872916	3874360	+	downstream
28	LOC_Os08g05120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	2645668	2651766	+	downstream
28	LOC_Os12g13209	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7356606	7356956	-	downstream
28	LOC_Os12g30760	disease resistance protein, putative	gene	disease resistance protein, putative	chr12	18440649	18445885	-	downstream
28	LOC_Os12g23960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	13612803	13613365	+	downstream
28	LOC_Os01g32200	hypothetical protein	gene	hypothetical protein	chr1	17628743	17629733	+	downstream
28	LOC_Os08g35790	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	22570254	22570754	-	downstream
28	LOC_Os08g29124	expressed protein	gene	expressed protein	chr8	17819654	17835422	-	downstream
28	LOC_Os08g23849	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	14436247	14436618	-	downstream
28	LOC_Os05g18320	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	10553486	10553888	-	downstream
28	LOC_Os01g65130	peptide transporter, putative, expressed	gene	peptide transporter, putative, expressed	chr1	37802975	37807157	+	downstream
28	LOC_Os10g08060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	4385317	4387396	+	downstream
28	LOC_Os02g36710	SET, putative, expressed	gene	SET, putative, expressed	chr2	22145563	22150173	-	downstream
28	LOC_Os01g08050	hypothetical protein	gene	hypothetical protein	chr1	3900384	3900836	+	downstream
28	LOC_Os05g17360	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9960118	9964562	-	downstream
28	LOC_Os01g19970	MYB family transcription factor, putative, expressed	gene	MYB family transcription factor, putative, expressed	chr1	11349483	11355839	+	downstream
28	LOC_Os05g31940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	18541432	18543596	-	downstream
28	LOC_Os02g27030	cysteine proteinase 1 precursor, putative, expressed	gene	cysteine proteinase 1 precursor, putative, expressed	chr2	15885658	15889427	+	downstream
28	LOC_Os05g30250	Os5bglu19 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed	gene	Os5bglu19 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed	chr5	17469786	17474289	+	downstream
28	LOC_Os04g06780	hypothetical protein	gene	hypothetical protein	chr4	3561027	3561347	-	downstream
28	LOC_Os11g12550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7041706	7042160	-	downstream
28	LOC_Os05g07430	hypothetical protein	gene	hypothetical protein	chr5	3959834	3960936	-	downstream
28	LOC_Os07g34760	expressed protein	gene	expressed protein	chr7	20825001	20826220	+	downstream
28	LOC_Os02g16890	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	9629924	9630448	-	downstream
28	LOC_Os01g28650	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	16029181	16029657	+	downstream
28	LOC_Os12g14948	unknown	gene	unknown	chr12	8545147	8545393	-	downstream
28	LOC_Os10g17660	profilin domain containing protein, expressed	gene	profilin domain containing protein, expressed	chr10	8856768	8857878	+	downstream
28	LOC_Os04g38820	GRF zinc finger family protein	gene	GRF zinc finger family protein	chr4	22900834	22902818	-	downstream
28	LOC_Os11g22050	hypothetical protein	gene	hypothetical protein	chr11	12212747	12213037	-	downstream
28	LOC_Os05g23200	expressed protein	gene	expressed protein	chr5	13178328	13180956	-	downstream
28	LOC_Os03g26010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	14906232	14907607	-	downstream
28	LOC_Os09g21930	hypothetical protein	gene	hypothetical protein	chr9	13278528	13278941	-	downstream
28	LOC_Os06g34480	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	20068816	20072120	+	downstream
28	LOC_Os04g58140	elongation factor Tu, putative, expressed	gene	elongation factor Tu, putative, expressed	chr4	34441235	34446230	-	downstream
28	LOC_Os06g33340	expressed protein	gene	expressed protein	chr6	19417812	19420896	-	downstream
28	LOC_Os03g32330	expressed protein	gene	expressed protein	chr3	18494588	18499925	+	downstream
28	LOC_Os07g31230	hypothetical protein	gene	hypothetical protein	chr7	18485724	18488047	-	downstream
28	LOC_Os06g50430	hypothetical protein	gene	hypothetical protein	chr6	30528301	30529521	+	downstream
28	LOC_Os09g18070	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	11074866	11076417	+	downstream
28	LOC_Os05g52104	unknown	gene	unknown	chr5	29887201	29887419	+	downstream
28	LOC_Os10g39770	zinc finger, C3HC4 type, domain containing protein, expressed	gene	zinc finger, C3HC4 type, domain containing protein, expressed	chr10	21200192	21205281	+	downstream
28	LOC_Os04g10820	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	5867865	5868260	-	downstream
28	LOC_Os11g29060	hypothetical protein	gene	hypothetical protein	chr11	16371266	16373667	+	downstream
28	LOC_Os01g16910	outer mitochondrial membrane porin, putative, expressed	gene	outer mitochondrial membrane porin, putative, expressed	chr1	9669749	9674723	-	downstream
28	LOC_Os05g16700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	9489276	9491060	-	downstream
28	LOC_Os04g41720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	24546292	24547788	+	downstream
28	LOC_Os06g49250	peptide transporter PTR2, putative, expressed	gene	peptide transporter PTR2, putative, expressed	chr6	29837285	29840402	+	downstream
28	LOC_Os07g34800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	20854036	20857343	+	downstream
28	LOC_Os12g35180	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	21363019	21363930	-	downstream
28	LOC_Os02g48510	hypothetical protein	gene	hypothetical protein	chr2	29688880	29690097	-	downstream
28	LOC_Os05g22280	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	12555531	12555938	+	downstream
28	LOC_Os07g19460	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr7	11504610	11508634	-	downstream
28	LOC_Os05g30454	thiamin pyrophosphokinase 1, putative, expressed	gene	thiamin pyrophosphokinase 1, putative, expressed	chr5	17584486	17589306	-	downstream
28	LOC_Os08g16850	hypothetical protein	gene	hypothetical protein	chr8	10300445	10300723	+	downstream
28	LOC_Os07g39330	hypothetical protein	gene	hypothetical protein	chr7	23561178	23561481	+	downstream
28	LOC_Os12g40000	hypothetical protein	gene	hypothetical protein	chr12	24694200	24696598	-	downstream
28	LOC_Os01g32510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17826118	17830581	-	downstream
28	LOC_Os02g18350	hypothetical protein	gene	hypothetical protein	chr2	10677080	10678983	-	downstream
28	LOC_Os10g04170	hypothetical protein	gene	hypothetical protein	chr10	1937488	1944393	+	downstream
28	LOC_Os01g12350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	6746476	6749728	+	downstream
28	LOC_Os10g01150	hypothetical protein	gene	hypothetical protein	chr10	116752	117419	-	downstream
28	LOC_Os04g05770	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2955163	2959421	-	downstream
28	LOC_Os04g10260	basic region leucine zipper domain containing protein	gene	basic region leucine zipper domain containing protein	chr4	5535015	5540912	-	downstream
28	LOC_Os05g48430	hypothetical protein	gene	hypothetical protein	chr5	27709630	27709845	-	downstream
28	LOC_Os07g46100	hypothetical protein	gene	hypothetical protein	chr7	27514146	27515417	-	downstream
28	LOC_Os08g22480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	13545406	13549868	+	downstream
28	LOC_Os04g05860	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3009795	3011589	-	downstream
28	LOC_Os02g28240	transferase family protein, putative	gene	transferase family protein, putative	chr2	16701967	16703216	-	downstream
28	LOC_Os02g33120	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	19697600	19698067	-	downstream
28	LOC_Os09g16760	ankyrin repeat family protein, putative, expressed	gene	ankyrin repeat family protein, putative, expressed	chr9	10251138	10253786	+	downstream
28	LOC_Os10g31050	hypothetical protein	gene	hypothetical protein	chr10	16168529	16171504	+	downstream
28	LOC_Os01g04310	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	1918749	1919431	-	downstream
28	LOC_Os12g28190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	16637064	16643174	+	downstream
28	LOC_Os07g14260	hypothetical protein	gene	hypothetical protein	chr7	8126482	8128443	-	downstream
28	LOC_Os10g08230	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr10	4461937	4463834	+	downstream
28	LOC_Os04g31950	LSM domain containing protein, expressed	gene	LSM domain containing protein, expressed	chr4	18962287	18967624	-	downstream
28	LOC_Os01g43774	cytochrome P450 72A1, putative, expressed	gene	cytochrome P450 72A1, putative, expressed	chr1	25072805	25077505	+	downstream
28	LOC_Os06g28910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16489582	16490124	+	downstream
28	LOC_Os01g34910	hypothetical protein	gene	hypothetical protein	chr1	19283916	19285904	-	downstream
28	LOC_Os07g26760	hypothetical protein	gene	hypothetical protein	chr7	15458779	15459170	+	downstream
28	LOC_Os05g17020	hypothetical protein	gene	hypothetical protein	chr5	9713061	9713537	+	downstream
28	LOC_Os05g41430	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	24197675	24199740	-	downstream
28	LOC_Os01g47960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	27443552	27447202	-	downstream
28	LOC_Os08g28250	hypothetical protein	gene	hypothetical protein	chr8	17237447	17238519	+	downstream
28	LOC_Os10g05450	hypothetical protein	gene	hypothetical protein	chr10	2686324	2686616	-	downstream
28	LOC_Os05g25600	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr5	14821979	14828912	+	downstream
28	LOC_Os02g43250	receptor-like protein kinase precursor, putative, expressed	gene	receptor-like protein kinase precursor, putative, expressed	chr2	26046951	26048347	-	downstream
28	LOC_Os05g05510	expressed protein	gene	expressed protein	chr5	2739682	2741043	-	downstream
28	LOC_Os07g18080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	10694856	10698161	+	downstream
28	LOC_Os06g25260	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	14774618	14775872	-	downstream
28	LOC_Os10g29960	hypothetical protein	gene	hypothetical protein	chr10	15477626	15479705	+	downstream
28	LOC_Os11g31200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	17717479	17719804	+	downstream
28	LOC_Os08g27360	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16703773	16707457	-	downstream
28	LOC_Os05g51710	pleckstrin homology domain-containing protein-related taxo, putative, expressed	gene	pleckstrin homology domain-containing protein-related taxo, putative, expressed	chr5	29601385	29604919	-	downstream
28	LOC_Os07g47860	tRNA synthetase, putative, expressed	gene	tRNA synthetase, putative, expressed	chr7	28583757	28592374	-	downstream
28	LOC_Os04g05130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2541770	2542739	-	downstream
28	LOC_Os06g31040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18057942	18059264	-	downstream
28	LOC_Os03g47380	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	26787382	26788621	-	downstream
28	LOC_Os01g15709	transferase family protein, putative	gene	transferase family protein, putative	chr1	8834574	8836002	+	downstream
28	LOC_Os12g11950	hypothetical protein	gene	hypothetical protein	chr12	6524487	6525376	+	downstream
28	LOC_Os07g32100	hypothetical protein	gene	hypothetical protein	chr7	19072369	19073790	+	downstream
28	LOC_Os02g27980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	16562510	16562972	+	downstream
28	LOC_Os03g30110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	17180469	17187077	-	downstream
28	LOC_Os07g09750	hypothetical protein	gene	hypothetical protein	chr7	5191109	5193921	-	downstream
28	LOC_Os05g08110	early light-induced protein, chloroplast precursor, putative, expressed	gene	early light-induced protein, chloroplast precursor, putative, expressed	chr5	4415759	4416698	-	downstream
28	LOC_Os06g23370	expressed protein	gene	expressed protein	chr6	13634896	13639071	-	downstream
28	LOC_Os10g14060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7665915	7667107	-	downstream
28	LOC_Os06g24370	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr6	14265061	14269871	+	downstream
28	LOC_Os04g13280	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7355909	7356325	-	downstream
28	LOC_Os07g18780	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	11106990	11112293	+	downstream
28	LOC_Os04g22660	tropinone reductase, putative, expressed	gene	tropinone reductase, putative, expressed	chr4	12829103	12829917	+	downstream
28	LOC_Os02g53540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	32751206	32754497	+	downstream
28	LOC_Os04g39310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	23219537	23221054	+	downstream
28	LOC_Os08g10110	hypothetical protein	gene	hypothetical protein	chr8	5866462	5867968	+	downstream
28	LOC_Os02g05130	hypothetical protein	gene	hypothetical protein	chr2	2451314	2452587	+	downstream
28	LOC_Os07g06910	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr7	3377110	3378240	-	downstream
28	LOC_Os06g20440	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	11741657	11745430	-	downstream
28	LOC_Os10g25180	phosphoinositide phosphatase family protein, putative, expressed	gene	phosphoinositide phosphatase family protein, putative, expressed	chr10	12926468	12930008	-	downstream
28	LOC_Os04g07280	AGAP002737-PA, putative, expressed	gene	AGAP002737-PA, putative, expressed	chr4	3861535	3864875	+	downstream
28	LOC_Os11g27580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	15417925	15420198	+	downstream
28	LOC_Os01g60860	spotted leaf 11, putative, expressed	gene	spotted leaf 11, putative, expressed	chr1	35184468	35186961	-	downstream
28	LOC_Os01g45770	hypothetical protein	gene	hypothetical protein	chr1	25999404	26000187	-	downstream
28	LOC_Os09g27630	hypothetical protein	gene	hypothetical protein	chr9	16791513	16794853	-	downstream
28	LOC_Os04g05630	hypothetical protein	gene	hypothetical protein	chr4	2864786	2865981	-	downstream
28	LOC_Os11g40720	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23887899	23889107	-	downstream
28	LOC_Os12g21540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12107199	12109346	+	downstream
28	LOC_Os04g22750	hypothetical protein	gene	hypothetical protein	chr4	12884091	12884291	+	downstream
28	LOC_Os04g06400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3353683	3356383	-	downstream
28	LOC_Os11g01090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	44371	50691	+	downstream
28	LOC_Os01g36130	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	19987805	19988146	+	downstream
28	LOC_Os07g36370	OsFBX247 - F-box domain containing protein, expressed	gene	OsFBX247 - F-box domain containing protein, expressed	chr7	21746761	21750112	-	downstream
28	LOC_Os01g55710	DNA-binding protein, putative	gene	DNA-binding protein, putative	chr1	32081972	32082649	+	downstream
28	LOC_Os08g26280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	16014693	16019983	-	downstream
28	LOC_Os06g34670	hypothetical protein	gene	hypothetical protein	chr6	20148014	20149254	-	downstream
28	LOC_Os12g22750	hypothetical protein	gene	hypothetical protein	chr12	12838213	12838922	-	downstream
28	LOC_Os01g47380	hypothetical protein	gene	hypothetical protein	chr1	27066564	27067972	+	downstream
28	LOC_Os02g35720	signal peptidase complex subunit 2, putative, expressed	gene	signal peptidase complex subunit 2, putative, expressed	chr2	21456307	21458651	-	downstream
28	LOC_Os07g17560	expressed protein	gene	expressed protein	chr7	10373301	10374103	-	downstream
28	LOC_Os04g19490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10844857	10847665	+	downstream
28	LOC_Os01g34020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18726880	18727101	+	downstream
28	LOC_Os01g15070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8456426	8456686	+	downstream
28	LOC_Os03g44270	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr3	24881873	24884763	+	downstream
28	LOC_Os01g24030	AMP-binding enzyme, putative, expressed	gene	AMP-binding enzyme, putative, expressed	chr1	13538736	13540932	+	downstream
28	LOC_Os10g32324	hypothetical protein	gene	hypothetical protein	chr10	16886009	16887394	-	downstream
28	LOC_Os06g20380	hypothetical protein	gene	hypothetical protein	chr6	11703388	11705017	-	downstream
28	LOC_Os07g14070	SCP-like extracellular protein	gene	SCP-like extracellular protein	chr7	8022549	8024747	+	downstream
28	LOC_Os12g05790	hypothetical protein	gene	hypothetical protein	chr12	2667725	2668922	-	downstream
28	LOC_Os04g40440	expressed protein	gene	expressed protein	chr4	23847386	23850960	+	downstream
28	LOC_Os11g22154	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	12243638	12245871	-	downstream
28	LOC_Os06g20509	unknown	gene	unknown	chr6	11789512	11789738	+	downstream
28	LOC_Os07g10040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	5353575	5354756	-	downstream
28	LOC_Os06g19910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11390392	11391975	-	downstream
28	LOC_Os11g16420	protein of unknown function containing protein, expressed	gene	protein of unknown function containing protein, expressed	chr11	9073789	9080017	-	downstream
28	LOC_Os02g21240	OsFBX48 - F-box domain containing protein, expressed	gene	OsFBX48 - F-box domain containing protein, expressed	chr2	12600448	12604232	-	downstream
28	LOC_Os04g27800	expressed protein	gene	expressed protein	chr4	16255030	16256947	-	downstream
28	LOC_Os03g26680	hypothetical protein	gene	hypothetical protein	chr3	15234159	15234717	-	downstream
28	LOC_Os10g42210	enoyl-CoA-hydratase, putative, expressed	gene	enoyl-CoA-hydratase, putative, expressed	chr10	22658335	22663014	-	downstream
28	LOC_Os06g42200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25333947	25337202	-	downstream
28	LOC_Os06g25020	hypothetical protein	gene	hypothetical protein	chr6	14649192	14649503	-	downstream
28	LOC_Os04g13930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7776344	7781854	+	downstream
28	LOC_Os01g19548	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr1	11088027	11092963	-	downstream
28	LOC_Os01g67940	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	39479630	39480010	-	downstream
28	LOC_Os02g45750	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr2	27831765	27835366	+	downstream
28	LOC_Os09g10720	AP2-associated protein kinase 1, putative, expressed	gene	AP2-associated protein kinase 1, putative, expressed	chr9	5846603	5850899	-	downstream
28	LOC_Os12g10784	2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed	gene	2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed	chr12	5800404	5806220	+	downstream
28	LOC_Os08g04320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	2117517	2120555	-	downstream
28	LOC_Os12g28310	hypothetical protein	gene	hypothetical protein	chr12	16735999	16737217	+	downstream
28	LOC_Os08g20750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12459915	12461228	-	downstream
28	LOC_Os03g37170	hypothetical protein	gene	hypothetical protein	chr3	20592861	20593684	-	downstream
28	LOC_Os10g09200	hypothetical protein	gene	hypothetical protein	chr10	4983059	4986533	+	downstream
28	LOC_Os12g09430	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4937526	4941050	+	downstream
28	LOC_Os01g38244	expressed protein	gene	expressed protein	chr1	21446441	21449046	-	downstream
28	LOC_Os10g17040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8464415	8466217	-	downstream
28	LOC_Os05g19340	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11233941	11234690	-	downstream
28	LOC_Os08g16670	OsFBX280 - F-box domain containing protein, expressed	gene	OsFBX280 - F-box domain containing protein, expressed	chr8	10197428	10200762	-	downstream
28	LOC_Os06g39430	hypothetical protein	gene	hypothetical protein	chr6	23408358	23409028	-	downstream
28	LOC_Os04g06930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3657281	3658204	+	downstream
28	LOC_Os01g03600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	1466735	1470802	-	downstream
28	LOC_Os01g25430	hypothetical protein	gene	hypothetical protein	chr1	14384670	14385900	-	downstream
28	LOC_Os11g32940	OsFBX421 - F-box domain containing protein, expressed	gene	OsFBX421 - F-box domain containing protein, expressed	chr11	18982697	18987554	-	downstream
28	LOC_Os03g16300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	8996180	9001477	-	downstream
28	LOC_Os06g09020	expressed protein	gene	expressed protein	chr6	4537338	4540706	+	downstream
28	LOC_Os10g12030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6695967	6702116	-	downstream
28	LOC_Os04g17220	hypothetical protein	gene	hypothetical protein	chr4	9430197	9430457	+	downstream
28	LOC_Os02g41530	hypothetical protein	gene	hypothetical protein	chr2	24902226	24902674	-	downstream
28	LOC_Os05g30280	Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed	gene	Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed	chr5	17486988	17492062	+	downstream
28	LOC_Os12g08100	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	4126211	4129542	+	downstream
28	LOC_Os09g04210	hydrolase/ zinc ion binding protein, putative, expressed	gene	hydrolase/ zinc ion binding protein, putative, expressed	chr9	2211160	2221909	-	downstream
28	LOC_Os02g30560	hypothetical protein	gene	hypothetical protein	chr2	18180503	18180790	-	downstream
28	LOC_Os03g57600	expressed protein	gene	expressed protein	chr3	32825515	32827793	-	downstream
28	LOC_Os08g35610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22420505	22421389	-	downstream
28	LOC_Os11g45680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	27158468	27161706	+	downstream
28	LOC_Os11g10180	OsFBX412 - F-box domain containing protein, expressed	gene	OsFBX412 - F-box domain containing protein, expressed	chr11	5514332	5517680	+	downstream
28	LOC_Os02g14210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	7781740	7787429	+	downstream
28	LOC_Os08g13280	expressed protein	gene	expressed protein	chr8	7893937	7894912	-	downstream
28	LOC_Os08g36250	expressed protein	gene	expressed protein	chr8	22846663	22848514	-	downstream
28	LOC_Os11g35600	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	20410973	20411482	-	downstream
28	LOC_Os11g35990	unknown	gene	unknown	chr11	20684471	20685603	+	downstream
28	LOC_Os07g08120	BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed	gene	BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed	chr7	4117355	4122593	+	downstream
28	LOC_Os01g28780	hypothetical protein	gene	hypothetical protein	chr1	16121291	16121902	-	downstream
28	LOC_Os06g29230	hypothetical protein	gene	hypothetical protein	chr6	16683094	16683462	+	downstream
28	LOC_Os04g26680	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	15560576	15561013	+	downstream
28	LOC_Os05g38780	hypothetical protein	gene	hypothetical protein	chr5	22688985	22690118	+	downstream
28	LOC_Os03g21690	lung seven transmembrane domain containing protein, putative, expressed	gene	lung seven transmembrane domain containing protein, putative, expressed	chr3	12379116	12384271	-	downstream
28	LOC_Os08g10700	hypothetical protein	gene	hypothetical protein	chr8	6297986	6298243	-	downstream
28	LOC_Os03g47100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	26634728	26635411	-	downstream
28	LOC_Os10g15210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7989557	7994871	+	downstream
28	LOC_Os02g40340	expressed protein	gene	expressed protein	chr2	24426182	24429328	-	downstream
28	LOC_Os03g41480	hypothetical protein	gene	hypothetical protein	chr3	23076320	23078739	-	downstream
28	LOC_Os03g15470	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	8496434	8497129	+	downstream
28	LOC_Os06g47540	hypothetical protein	gene	hypothetical protein	chr6	28776683	28778894	-	downstream
28	LOC_Os08g15350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9353570	9355604	-	downstream
28	LOC_Os01g57170	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	33039811	33040615	-	downstream
28	LOC_Os01g55650	phospholipase, patatin family, putative, expressed	gene	phospholipase, patatin family, putative, expressed	chr1	32056339	32061785	-	downstream
28	LOC_Os05g32280	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	18757384	18758573	-	downstream
28	LOC_Os12g19930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11609819	11614506	-	downstream
28	LOC_Os11g12050	NBS-LRR type disease resistance protein, putative, expressed	gene	NBS-LRR type disease resistance protein, putative, expressed	chr11	6698873	6704990	+	downstream
28	LOC_Os10g22840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	11797554	11798872	-	downstream
28	LOC_Os01g35780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19818841	19819668	+	downstream
28	LOC_Os08g11870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	6960243	6961523	-	downstream
28	LOC_Os09g26270	hypothetical protein	gene	hypothetical protein	chr9	15873527	15875552	+	downstream
28	LOC_Os05g48710	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	27858076	27861101	+	downstream
28	LOC_Os04g34340	hypothetical protein	gene	hypothetical protein	chr4	20625778	20627113	-	downstream
28	LOC_Os02g25810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	15115100	15120954	-	downstream
28	LOC_Os01g25290	hypothetical protein	gene	hypothetical protein	chr1	14284923	14285984	+	downstream
28	LOC_Os06g37990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	22465481	22468359	+	downstream
28	LOC_Os09g22090	mannose-6-phosphate isomerase, putative, expressed	gene	mannose-6-phosphate isomerase, putative, expressed	chr9	13374696	13380516	-	downstream
28	LOC_Os06g49890	coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed	gene	coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed	chr6	30201972	30206143	-	downstream
28	LOC_Os08g19790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	11849814	11850759	+	downstream
28	LOC_Os02g29980	X8 domain containing protein, expressed	gene	X8 domain containing protein, expressed	chr2	17807578	17813305	+	downstream
28	LOC_Os08g23829	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	14428872	14430266	-	downstream
28	LOC_Os06g45750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	27689484	27692242	+	downstream
28	LOC_Os05g23060	hypothetical protein	gene	hypothetical protein	chr5	13086288	13086977	+	downstream
28	LOC_Os12g08540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4329181	4329453	+	downstream
28	LOC_Os11g43440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	25762625	25763245	+	downstream
28	LOC_Os12g37320	lipoxygenase 2.2, chloroplast precursor, putative, expressed	gene	lipoxygenase 2.2, chloroplast precursor, putative, expressed	chr12	22886566	22890237	+	downstream
28	LOC_Os02g08330	gp176, putative, expressed	gene	gp176, putative, expressed	chr2	4424436	4426617	-	downstream
28	LOC_Os12g12020	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	6588993	6589523	-	downstream
28	LOC_Os01g15170	hypothetical protein	gene	hypothetical protein	chr1	8504035	8504685	+	downstream
28	LOC_Os04g31200	hypothetical protein	gene	hypothetical protein	chr4	18500215	18501393	-	downstream
28	LOC_Os01g37200	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr1	20774429	20775062	-	downstream
28	LOC_Os08g34410	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	21601098	21601865	-	downstream
28	LOC_Os07g36070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	21564828	21568329	-	downstream
28	LOC_Os02g33040	hypothetical protein	gene	hypothetical protein	chr2	19636332	19636992	+	downstream
28	LOC_Os12g18240	hypothetical protein	gene	hypothetical protein	chr12	10531200	10531499	+	downstream
28	LOC_Os02g47550	hypothetical protein	gene	hypothetical protein	chr2	29046402	29046770	-	downstream
28	LOC_Os01g47440	hypothetical protein	gene	hypothetical protein	chr1	27111806	27112462	-	downstream
28	LOC_Os08g23450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14193627	14197595	-	downstream
28	LOC_Os08g23110	tRNA synthetase, putative, expressed	gene	tRNA synthetase, putative, expressed	chr8	13917211	13923003	+	downstream
28	LOC_Os05g28580	hypothetical protein	gene	hypothetical protein	chr5	16674820	16675521	+	downstream
28	LOC_Os12g04300	sulfotransferase domain containing protein	gene	sulfotransferase domain containing protein	chr12	1821392	1822197	-	downstream
28	LOC_Os05g04390	hypothetical protein	gene	hypothetical protein	chr5	2022128	2022863	-	downstream
28	LOC_Os08g33060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	20536158	20540299	+	downstream
28	LOC_Os02g13110	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed	gene	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed	chr2	6963959	6971934	-	downstream
28	LOC_Os10g12790	ligA, putative	gene	ligA, putative	chr10	7157972	7158574	-	downstream
28	LOC_Os08g40280	lectin-like protein kinase, putative, expressed	gene	lectin-like protein kinase, putative, expressed	chr8	25495150	25499447	+	downstream
28	LOC_Os05g51560	CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed	gene	CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed	chr5	29508496	29513367	-	downstream
28	LOC_Os07g11530	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr7	6348277	6348729	+	downstream
28	LOC_Os07g22504	NADPH-dependent oxidoreductase, putative	gene	NADPH-dependent oxidoreductase, putative	chr7	12659994	12661499	+	downstream
28	LOC_Os04g30580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	18089074	18092405	+	downstream
28	LOC_Os01g06290	splicing factor, arginine/serine-rich, putative, expressed	gene	splicing factor, arginine/serine-rich, putative, expressed	chr1	2984356	2988299	-	downstream
28	LOC_Os09g09150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	4893043	4895858	-	downstream
28	LOC_Os05g31290	acyl carrier protein, putative, expressed	gene	acyl carrier protein, putative, expressed	chr5	18130150	18132720	-	downstream
28	LOC_Os11g07710	dirigent, putative	gene	dirigent, putative	chr11	3929957	3930493	-	downstream
28	LOC_Os03g42920	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	23936499	23936999	-	downstream
28	LOC_Os04g25300	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	14614687	14617293	-	downstream
28	LOC_Os05g30850	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr5	17842897	17843760	+	downstream
28	LOC_Os08g12960	speckle-type POZ protein-like, putative	gene	speckle-type POZ protein-like, putative	chr8	7692827	7693870	-	downstream
28	LOC_Os11g31600	hypothetical protein	gene	hypothetical protein	chr11	18003663	18004326	+	downstream
28	LOC_Os07g20544	aspartokinase, chloroplast precursor, putative, expressed	gene	aspartokinase, chloroplast precursor, putative, expressed	chr7	11864389	11873248	-	downstream
28	LOC_Os04g06990	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	3677724	3679766	+	downstream
28	LOC_Os11g16830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9338514	9341621	-	downstream
28	LOC_Os06g29310	ulp1 protease family protein, putative, expressed	gene	ulp1 protease family protein, putative, expressed	chr6	16731926	16744664	-	downstream
28	LOC_Os04g45290	glycosyl hydrolases, putative, expressed	gene	glycosyl hydrolases, putative, expressed	chr4	26580076	26586770	+	downstream
28	LOC_Os04g21920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	12403099	12403815	+	downstream
28	LOC_Os07g39550	hypothetical protein	gene	hypothetical protein	chr7	23694189	23694545	+	downstream
28	LOC_Os02g47710	hypothetical protein	gene	hypothetical protein	chr2	29163379	29163617	-	downstream
28	LOC_Os08g25500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	15514207	15514719	+	downstream
28	LOC_Os09g26620	auxin-repressed protein, putative, expressed	gene	auxin-repressed protein, putative, expressed	chr9	16152175	16154169	+	downstream
28	LOC_Os03g33900	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19351434	19353926	-	downstream
28	LOC_Os07g28310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16531604	16533685	-	downstream
28	LOC_Os02g55790	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	34152482	34155627	+	downstream
28	LOC_Os10g16680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8246401	8246772	-	downstream
28	LOC_Os08g15030	aspartate carbamoyltransferase, putative, expressed	gene	aspartate carbamoyltransferase, putative, expressed	chr8	9070643	9074887	-	downstream
28	LOC_Os09g23890	hypothetical protein	gene	hypothetical protein	chr9	14241752	14242440	-	downstream
28	LOC_Os10g02990	leucine-rich repeat receptor-like protein kinase 1, putative	gene	leucine-rich repeat receptor-like protein kinase 1, putative	chr10	1242455	1244637	-	downstream
28	LOC_Os05g18950	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr5	11000357	11002088	+	downstream
28	LOC_Os05g06814	expressed protein	gene	expressed protein	chr5	3560962	3571357	-	downstream
28	LOC_Os03g29370	hypothetical protein	gene	hypothetical protein	chr3	16721756	16722523	-	downstream
28	LOC_Os03g07020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	3578797	3582102	+	downstream
28	LOC_Os04g26660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	15548695	15555307	+	downstream
28	LOC_Os09g03890	octicosapeptide/Phox/Bem1p, putative, expressed	gene	octicosapeptide/Phox/Bem1p, putative, expressed	chr9	1984632	1989885	+	downstream
28	LOC_Os03g25510	hypothetical protein	gene	hypothetical protein	chr3	14573217	14573462	-	downstream
28	LOC_Os12g35510	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	21563962	21564348	-	downstream
28	LOC_Os02g26440	prefoldin subunit, putative, expressed	gene	prefoldin subunit, putative, expressed	chr2	15518249	15522294	+	downstream
28	LOC_Os06g42540	expressed protein	gene	expressed protein	chr6	25581965	25584095	+	downstream
28	LOC_Os07g12430	hypothetical protein	gene	hypothetical protein	chr7	7090853	7092513	-	downstream
28	LOC_Os05g15070	ligA, putative	gene	ligA, putative	chr5	8561172	8561693	-	downstream
28	LOC_Os01g52030	zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed	gene	zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed	chr1	29903059	29903812	-	downstream
28	LOC_Os08g30150	1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed	gene	1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed	chr8	18539420	18540873	-	downstream
28	LOC_Os07g22470	hypothetical protein	gene	hypothetical protein	chr7	12631413	12633113	+	downstream
28	LOC_Os09g17690	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	10820770	10821132	-	downstream
28	LOC_Os07g42670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25547695	25548759	+	downstream
28	LOC_Os01g66379	expressed protein	gene	expressed protein	chr1	38544536	38557338	-	downstream
28	LOC_Os11g45030	hypothetical protein	gene	hypothetical protein	chr11	26782200	26782421	+	downstream
28	LOC_Os01g20050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11385046	11386630	-	downstream
28	LOC_Os02g24750	expressed protein	gene	expressed protein	chr2	14351273	14355991	-	downstream
28	LOC_Os07g11570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6384564	6385337	-	downstream
28	LOC_Os12g26510	expressed protein	gene	expressed protein	chr12	15496106	15497082	-	downstream
28	LOC_Os03g27900	ZIM motif family protein, expressed	gene	ZIM motif family protein, expressed	chr3	16023836	16024837	-	downstream
28	LOC_Os08g09520	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr8	5518882	5522437	-	downstream
28	LOC_Os08g21350	cig3, putative, expressed	gene	cig3, putative, expressed	chr8	12722126	12730478	-	downstream
28	LOC_Os10g22440	hypothetical protein	gene	hypothetical protein	chr10	11545904	11546737	-	downstream
28	LOC_Os07g11460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6302926	6305761	+	downstream
28	LOC_Os01g20080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	11397890	11400008	-	downstream
28	LOC_Os08g10170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	5897000	5899376	+	downstream
28	LOC_Os06g40450	targeting protein for Xklp2, putative, expressed	gene	targeting protein for Xklp2, putative, expressed	chr6	24090285	24095121	-	downstream
28	LOC_Os05g25990	hypothetical protein	gene	hypothetical protein	chr5	15038858	15039856	-	downstream
28	LOC_Os08g17000	expressed protein	gene	expressed protein	chr8	10409097	10410908	+	downstream
28	LOC_Os05g18130	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	10421177	10421791	-	downstream
28	LOC_Os03g36790	tobamovirus multiplication protein, putative, expressed	gene	tobamovirus multiplication protein, putative, expressed	chr3	20419260	20424839	-	downstream
28	LOC_Os11g27500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15359002	15359993	-	downstream
28	LOC_Os12g33620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20267779	20268728	-	downstream
28	LOC_Os01g39230	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	22066753	22067196	-	downstream
28	LOC_Os04g14520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8125486	8127639	+	downstream
28	LOC_Os11g11000	 ELMO/CED-12 family protein, putative, expressed	gene	 ELMO/CED-12 family protein, putative, expressed	chr11	6063986	6069551	-	downstream
28	LOC_Os07g20160	glycine-rich cell wall protein, putative	gene	glycine-rich cell wall protein, putative	chr7	11636286	11636942	-	downstream
28	LOC_Os08g11940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	7000089	7002919	-	downstream
28	LOC_Os07g16090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9376088	9379423	-	downstream
28	LOC_Os03g40490	hypothetical protein	gene	hypothetical protein	chr3	22510750	22511034	-	downstream
28	LOC_Os11g42320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	25013977	25020087	+	downstream
28	LOC_Os01g29040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16254494	16257493	-	downstream
28	LOC_Os10g25740	cellulose synthase, putative	gene	cellulose synthase, putative	chr10	13268175	13268537	-	downstream
28	LOC_Os12g25250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14516707	14518155	+	downstream
28	LOC_Os12g08590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4365579	4368331	+	downstream
28	LOC_Os02g33510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	19929142	19930348	-	downstream
28	LOC_Os05g37960	indole-3-acetic acid-amido synthetase GH3.2, putative	gene	indole-3-acetic acid-amido synthetase GH3.2, putative	chr5	22209199	22211066	-	downstream
28	LOC_Os12g18870	unknown	gene	unknown	chr12	10945860	10946163	+	downstream
28	LOC_Os01g50660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	29094655	29094981	-	downstream
28	LOC_Os01g03790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	1591575	1591979	-	downstream
28	LOC_Os11g17400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	9698612	9700982	+	downstream
28	LOC_Os02g17260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9894795	9895713	-	downstream
28	LOC_Os01g60100	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	34754299	34756610	+	downstream
28	LOC_Os05g10430	hypothetical protein	gene	hypothetical protein	chr5	5679735	5680596	+	downstream
28	LOC_Os11g29190	40S ribosomal protein S5, putative, expressed	gene	40S ribosomal protein S5, putative, expressed	chr11	16452540	16454636	-	downstream
28	LOC_Os06g13890	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	7734542	7740580	+	downstream
28	LOC_Os10g32960	peroxisome assembly protein 12, putative, expressed	gene	peroxisome assembly protein 12, putative, expressed	chr10	17179539	17184438	+	downstream
28	LOC_Os02g01460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	269817	271352	-	downstream
28	LOC_Os09g01860	hypothetical protein	gene	hypothetical protein	chr9	591852	592884	-	downstream
28	LOC_Os09g14210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8397366	8400724	-	downstream
28	LOC_Os10g15150	hypothetical protein	gene	hypothetical protein	chr10	7959376	7960176	+	downstream
28	LOC_Os09g10860	hypothetical protein	gene	hypothetical protein	chr9	5942545	5942847	-	downstream
28	LOC_Os10g08200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4451952	4453563	-	downstream
28	LOC_Os06g09140	hypothetical protein	gene	hypothetical protein	chr6	4603421	4604035	-	downstream
28	LOC_Os09g03580	hypothetical protein	gene	hypothetical protein	chr9	1763591	1765060	+	downstream
28	LOC_Os01g63060	phosphatidic acid phosphatase-related, putative, expressed	gene	phosphatidic acid phosphatase-related, putative, expressed	chr1	36539104	36544153	+	downstream
28	LOC_Os12g32760	transporter family protein, putative, expressed	gene	transporter family protein, putative, expressed	chr12	19759779	19762953	-	downstream
28	LOC_Os04g02940	hypothetical protein	gene	hypothetical protein	chr4	1169172	1169435	-	downstream
28	LOC_Os06g48889	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29601567	29601998	-	downstream
28	LOC_Os06g08930	glutamate receptor 2.8 precursor, putative	gene	glutamate receptor 2.8 precursor, putative	chr6	4499767	4501666	-	downstream
28	LOC_Os04g17000	hypothetical protein	gene	hypothetical protein	chr4	9300472	9300945	-	downstream
28	LOC_Os11g31910	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	18289397	18292909	+	downstream
28	LOC_Os01g68410	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	39749851	39755796	+	downstream
28	LOC_Os02g42330	nitrilase, putative, expressed	gene	nitrilase, putative, expressed	chr2	25453528	25456861	+	downstream
28	LOC_Os02g09569	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	4926922	4928035	-	downstream
28	LOC_Os02g18260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	10593566	10594339	-	downstream
28	LOC_Os08g26610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16182297	16184135	-	downstream
28	LOC_Os02g30730	SART-1 family protein, putative, expressed	gene	SART-1 family protein, putative, expressed	chr2	18305661	18311428	-	downstream
28	LOC_Os03g59880	expressed protein	gene	expressed protein	chr3	34081806	34082981	+	downstream
28	LOC_Os05g18270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10511032	10512913	-	downstream
28	LOC_Os01g38940	hypothetical protein	gene	hypothetical protein	chr1	21875080	21875546	+	downstream
28	LOC_Os12g17710	hypothetical protein	gene	hypothetical protein	chr12	10144055	10145398	-	downstream
28	LOC_Os04g25580	hypothetical protein	gene	hypothetical protein	chr4	14819424	14821325	-	downstream
28	LOC_Os04g24020	hypothetical protein	gene	hypothetical protein	chr4	13715917	13717081	-	downstream
28	LOC_Os10g22200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	11402272	11406239	+	downstream
28	LOC_Os09g16410	hypothetical protein	gene	hypothetical protein	chr9	10038307	10038856	-	downstream
28	LOC_Os07g31340	regulator of nonsense transcripts 1, putative, expressed	gene	regulator of nonsense transcripts 1, putative, expressed	chr7	18554549	18564226	+	downstream
28	LOC_Os02g13030	hypothetical protein	gene	hypothetical protein	chr2	6905218	6905667	-	downstream
28	LOC_Os01g64840	aspartic proteinase nepenthesin-1 precursor, putative, expressed	gene	aspartic proteinase nepenthesin-1 precursor, putative, expressed	chr1	37640469	37642377	+	downstream
28	LOC_Os09g08590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	4477192	4480656	+	downstream
28	LOC_Os03g36160	DNAJ heat shock N-terminal domain-containing protein, putative, expressed	gene	DNAJ heat shock N-terminal domain-containing protein, putative, expressed	chr3	20060188	20061066	+	downstream
28	LOC_Os11g37290	hypothetical protein	gene	hypothetical protein	chr11	21553224	21555440	-	downstream
28	LOC_Os02g52570	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	32163252	32163946	+	downstream
28	LOC_Os04g16600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9020489	9029767	+	downstream
28	LOC_Os12g20300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11850593	11856529	-	downstream
28	LOC_Os04g07870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	4188724	4190398	+	downstream
28	LOC_Os12g14490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8269372	8271512	+	downstream
28	LOC_Os04g15690	DSBA-like thioredoxin domain containing protein, expressed	gene	DSBA-like thioredoxin domain containing protein, expressed	chr4	8523785	8528456	+	downstream
28	LOC_Os02g24134	Sec1 family transport protein, putative, expressed	gene	Sec1 family transport protein, putative, expressed	chr2	13971739	13981560	-	downstream
28	LOC_Os06g41270	hypothetical protein	gene	hypothetical protein	chr6	24694685	24695080	-	downstream
28	LOC_Os03g26730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	15253767	15254810	+	downstream
28	LOC_Os01g11670	OsSCP2 - Putative Serine Carboxypeptidase homologue, expressed	gene	OsSCP2 - Putative Serine Carboxypeptidase homologue, expressed	chr1	6294991	6296676	+	downstream
28	LOC_Os12g14660	hypothetical protein	gene	hypothetical protein	chr12	8382722	8384434	+	downstream
28	LOC_Os03g37140	expressed protein	gene	expressed protein	chr3	20582936	20591933	-	downstream
28	LOC_Os10g16560	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr10	8182919	8190980	+	downstream
28	LOC_Os08g19310	pentatricopeptide repeat domain containing protein, putative	gene	pentatricopeptide repeat domain containing protein, putative	chr8	11551524	11553944	-	downstream
28	LOC_Os12g42180	ribosomal protein, putative, expressed	gene	ribosomal protein, putative, expressed	chr12	26105879	26108174	-	downstream
28	LOC_Os07g26100	expressed protein	gene	expressed protein	chr7	14972703	14974038	-	downstream
28	LOC_Os05g09210	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	5149905	5150762	+	downstream
28	LOC_Os01g27240	12-oxophytodienoate reductase, putative, expressed	gene	12-oxophytodienoate reductase, putative, expressed	chr1	15191834	15194672	-	downstream
28	LOC_Os08g33500	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	20905777	20909109	+	downstream
28	LOC_Os03g43860	SNF7 domain containing protein, putative, expressed	gene	SNF7 domain containing protein, putative, expressed	chr3	24594867	24598455	-	downstream
28	LOC_Os03g37340	hypothetical protein	gene	hypothetical protein	chr3	20693586	20694615	-	downstream
28	LOC_Os04g18930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10515275	10516856	-	downstream
28	LOC_Os06g20240	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr6	11617544	11618253	-	downstream
28	LOC_Os10g05329	hypothetical protein	gene	hypothetical protein	chr10	2628436	2628819	-	downstream
28	LOC_Os07g29850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	17554710	17564132	-	downstream
28	LOC_Os05g17510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10052264	10054083	-	downstream
28	LOC_Os01g40760	expressed protein	gene	expressed protein	chr1	23029208	23029956	+	downstream
28	LOC_Os01g07820	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr1	3747865	3751620	-	downstream
28	LOC_Os10g18810	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	9503885	9504274	-	downstream
28	LOC_Os08g16960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10382450	10384891	+	downstream
28	LOC_Os06g16880	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9776895	9781535	+	downstream
28	LOC_Os07g05760	hypothetical protein	gene	hypothetical protein	chr7	2771086	2772060	+	downstream
28	LOC_Os09g12170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6882145	6883931	-	downstream
28	LOC_Os06g32560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18936419	18939147	+	downstream
28	LOC_Os09g24630	hypothetical protein	gene	hypothetical protein	chr9	14660674	14663151	-	downstream
28	LOC_Os05g33390	cation-transporting ATPase, putative, expressed	gene	cation-transporting ATPase, putative, expressed	chr5	19546956	19562189	-	downstream
28	LOC_Os08g22230	transposon protein, putative, Pong sub-class	gene	transposon protein, putative, Pong sub-class	chr8	13402150	13404008	-	downstream
28	LOC_Os03g33660	hypothetical protein	gene	hypothetical protein	chr3	19252722	19253641	-	downstream
28	LOC_Os04g01250	amidase family protein, putative, expressed	gene	amidase family protein, putative, expressed	chr4	186743	196110	-	downstream
28	LOC_Os10g38520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	20497598	20498020	+	downstream
28	LOC_Os07g27180	tetratricopeptide repeat domain containing protein, expressed	gene	tetratricopeptide repeat domain containing protein, expressed	chr7	15767899	15786364	-	downstream
28	LOC_Os10g15320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8052108	8052836	-	downstream
28	LOC_Os06g31520	hypothetical protein	gene	hypothetical protein	chr6	18329311	18330439	+	downstream
28	LOC_Os12g36120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	22110194	22113212	+	downstream
28	LOC_Os04g13460	expressed protein	gene	expressed protein	chr4	7487741	7489133	-	downstream
28	LOC_Os11g36980	hypothetical protein	gene	hypothetical protein	chr11	21358606	21359479	-	downstream
28	LOC_Os06g45610	expressed protein	gene	expressed protein	chr6	27613008	27613832	+	downstream
28	LOC_Os08g11400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6693374	6693781	+	downstream
28	LOC_Os06g13100	CREG1 precursor, putative, expressed	gene	CREG1 precursor, putative, expressed	chr6	7187390	7190452	-	downstream
28	LOC_Os05g43252	expressed protein	gene	expressed protein	chr5	25101733	25106715	+	downstream
28	LOC_Os06g49710	expressed protein	gene	expressed protein	chr6	30073602	30074501	+	downstream
28	LOC_Os04g47110	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	27795733	27796912	-	downstream
28	LOC_Os11g19890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11452569	11453422	-	downstream
28	LOC_Os02g35480	expressed protein	gene	expressed protein	chr2	21319447	21324077	-	downstream
28	LOC_Os12g31200	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr12	18754902	18758784	+	downstream
28	LOC_Os07g27530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16089321	16090422	-	downstream
28	LOC_Os06g16980	DNA topoisomerase I family protein, expressed	gene	DNA topoisomerase I family protein, expressed	chr6	9839889	9855981	-	downstream
28	LOC_Os12g19280	hypothetical protein	gene	hypothetical protein	chr12	11171928	11173479	+	downstream
28	LOC_Os05g40800	hypothetical protein	gene	hypothetical protein	chr5	23863391	23865674	+	downstream
28	LOC_Os02g15320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	8565851	8569181	+	downstream
28	LOC_Os04g17080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	9352134	9352904	+	downstream
28	LOC_Os12g15800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9015950	9018878	+	downstream
28	LOC_Os11g09410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	5039735	5042993	+	downstream
28	LOC_Os10g20320	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	10154308	10154991	+	downstream
28	LOC_Os05g16490	hypothetical protein	gene	hypothetical protein	chr5	9357360	9359240	-	downstream
28	LOC_Os05g43930	O-methyltransferase, putative, expressed	gene	O-methyltransferase, putative, expressed	chr5	25501929	25503649	+	downstream
28	LOC_Os01g22600	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr1	12703674	12708782	-	downstream
28	LOC_Os09g28090	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	17052919	17053350	-	downstream
28	LOC_Os03g19740	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	11096141	11096615	+	downstream
28	LOC_Os03g47564	expressed protein	gene	expressed protein	chr3	26891332	26892579	+	downstream
28	LOC_Os10g35400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	18851733	18854848	+	downstream
28	LOC_Os05g14620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8328582	8328917	-	downstream
28	LOC_Os11g36780	hypothetical protein	gene	hypothetical protein	chr11	21250719	21252325	+	downstream
28	LOC_Os07g22400	POLA3 - Putative DNA polymerase alpha complex subunit, expressed	gene	POLA3 - Putative DNA polymerase alpha complex subunit, expressed	chr7	12573587	12578672	-	downstream
28	LOC_Os02g33190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	19728096	19729943	+	downstream
28	LOC_Os04g23910	OsMADS25 - MADS-box family gene with MIKCc type-box, expressed	gene	OsMADS25 - MADS-box family gene with MIKCc type-box, expressed	chr4	13663424	13666598	+	downstream
28	LOC_Os04g16020	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	8691097	8691624	-	downstream
28	LOC_Os02g25460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	14864372	14865388	-	downstream
28	LOC_Os03g14470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	7859698	7861523	+	downstream
28	LOC_Os11g40560	expressed protein	gene	expressed protein	chr11	23737494	23738252	+	downstream
28	LOC_Os11g09780	hypothetical protein	gene	hypothetical protein	chr11	5219584	5220920	+	downstream
28	LOC_Os11g24012	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13145041	13148900	+	downstream
28	LOC_Os01g18050	tubulin/FtsZ domain containing protein, putative, expressed	gene	tubulin/FtsZ domain containing protein, putative, expressed	chr1	10097258	10101997	-	downstream
28	LOC_Os01g32610	expressed protein	gene	expressed protein	chr1	17880735	17884441	-	downstream
28	LOC_Os08g22200	expressed protein	gene	expressed protein	chr8	13390181	13396125	-	downstream
28	LOC_Os08g23640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14304126	14305983	-	downstream
28	LOC_Os09g10380	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5680007	5680749	-	downstream
28	LOC_Os09g11100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	6153314	6159137	+	downstream
28	LOC_Os02g46890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	28599792	28602017	-	downstream
28	LOC_Os01g41510	calcineurin B, putative, expressed	gene	calcineurin B, putative, expressed	chr1	23497399	23501333	+	downstream
28	LOC_Os12g30350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	18193501	18196716	+	downstream
28	LOC_Os01g29640	hypothetical protein	gene	hypothetical protein	chr1	16611700	16612173	+	downstream
28	LOC_Os09g09279	unknown	gene	unknown	chr9	4965329	4966709	+	downstream
28	LOC_Os04g30810	OsFBX129 - F-box domain containing protein	gene	OsFBX129 - F-box domain containing protein	chr4	18247614	18249257	-	downstream
28	LOC_Os08g36179	hypothetical protein	gene	hypothetical protein	chr8	22819276	22820136	+	downstream
28	LOC_Os04g02700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	1025344	1028645	+	downstream
28	LOC_Os03g16190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	8926652	8927176	+	downstream
28	LOC_Os11g36220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	20844733	20851486	-	downstream
28	LOC_Os02g20980	expressed protein	gene	expressed protein	chr2	12414326	12421423	-	downstream
28	LOC_Os02g18400	hypothetical protein	gene	hypothetical protein	chr2	10705442	10705903	-	downstream
28	LOC_Os05g22630	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	12787240	12789041	+	downstream
28	LOC_Os08g25864	expressed protein	gene	expressed protein	chr8	15752746	15755813	-	downstream
28	LOC_Os11g32330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18629617	18632149	+	downstream
28	LOC_Os08g23800	hypothetical protein	gene	hypothetical protein	chr8	14406103	14407871	+	downstream
28	LOC_Os12g25968	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	15072117	15072317	-	downstream
28	LOC_Os11g38290	hypothetical protein	gene	hypothetical protein	chr11	22205081	22206398	+	downstream
28	LOC_Os04g43400	Os4bglu17 - GH1 gene fragment, expressed	gene	Os4bglu17 - GH1 gene fragment, expressed	chr4	25487433	25489844	+	downstream
28	LOC_Os06g15180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	8600270	8601527	-	downstream
28	LOC_Os11g43560	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr11	25814964	25819692	-	downstream
28	LOC_Os04g10709	unknown	gene	unknown	chr4	5818136	5818382	+	downstream
28	LOC_Os09g12990	hypothetical protein	gene	hypothetical protein	chr9	7493637	7494432	-	downstream
28	LOC_Os04g35320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21308213	21311222	+	downstream
28	LOC_Os07g25410	peptidase, M24 family protein, putative, expressed	gene	peptidase, M24 family protein, putative, expressed	chr7	14519338	14523576	-	downstream
28	LOC_Os04g29490	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	17357413	17357850	+	downstream
28	LOC_Os06g25439	NAD dependent epimerase/dehydratase family protein, putative, expressed	gene	NAD dependent epimerase/dehydratase family protein, putative, expressed	chr6	14879481	14880941	-	downstream
28	LOC_Os10g20300	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	10137238	10139480	-	downstream
28	LOC_Os08g01170	acetyltransferase, GNAT family, putative, expressed	gene	acetyltransferase, GNAT family, putative, expressed	chr8	108493	109395	-	downstream
28	LOC_Os07g20150	expressed protein	gene	expressed protein	chr7	11631046	11635664	-	downstream
28	LOC_Os11g25280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	13940567	13944551	+	downstream
28	LOC_Os07g28960	hypothetical protein	gene	hypothetical protein	chr7	16988474	16989119	-	downstream
28	LOC_Os05g51250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29328818	29333740	-	downstream
28	LOC_Os03g31700	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	18098797	18099832	+	downstream
28	LOC_Os10g20740	hypothetical protein	gene	hypothetical protein	chr10	10440641	10441676	-	downstream
28	LOC_Os03g33150	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	18960628	18960876	+	downstream
28	LOC_Os04g34220	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	20556860	20558095	-	downstream
28	LOC_Os01g05970	OsFBO1 - F-box and other domain containing protein, expressed	gene	OsFBO1 - F-box and other domain containing protein, expressed	chr1	2843429	2857134	-	downstream
28	LOC_Os03g33140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	18956324	18959874	+	downstream
28	LOC_Os01g37740	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	21108212	21109046	-	downstream
28	LOC_Os01g41090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23267252	23272370	-	downstream
28	LOC_Os08g13140	hypothetical protein	gene	hypothetical protein	chr8	7807561	7808013	-	downstream
28	LOC_Os02g33500	threonyl-tRNA synthetase, putative, expressed	gene	threonyl-tRNA synthetase, putative, expressed	chr2	19918486	19922472	-	downstream
28	LOC_Os09g14019	expressed protein	gene	expressed protein	chr9	8281691	8285162	-	downstream
28	LOC_Os10g18910	hypothetical protein	gene	hypothetical protein	chr10	9560680	9560997	+	downstream
28	LOC_Os03g51890	hypothetical protein	gene	hypothetical protein	chr3	29741901	29748891	-	downstream
28	LOC_Os12g19870	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11574561	11576807	-	downstream
28	LOC_Os10g17890	OsWAK113 - OsWAK receptor-like  protein OsWAK-RLP	gene	OsWAK113 - OsWAK receptor-like  protein OsWAK-RLP	chr10	8970821	8971732	+	downstream
28	LOC_Os04g09450	hypothetical protein	gene	hypothetical protein	chr4	5055138	5056397	-	downstream
28	LOC_Os04g31290	helix-loop-helix DNA-binding domain containing protein, expressed	gene	helix-loop-helix DNA-binding domain containing protein, expressed	chr4	18548512	18550781	+	downstream
28	LOC_Os01g38790	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	21761116	21762552	-	downstream
28	LOC_Os09g15620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	9532863	9534256	-	downstream
28	LOC_Os01g18020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	10079785	10081250	-	downstream
28	LOC_Os03g16500	aspartic proteinase nepenthesin precursor, putative, expressed	gene	aspartic proteinase nepenthesin precursor, putative, expressed	chr3	9095199	9097370	+	downstream
28	LOC_Os10g31060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16174568	16176005	+	downstream
28	LOC_Os08g23350	hypothetical protein	gene	hypothetical protein	chr8	14097604	14097984	-	downstream
28	LOC_Os01g21970	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr1	12331769	12336201	-	downstream
28	LOC_Os09g29710	beta-expansin precursor, putative, expressed	gene	beta-expansin precursor, putative, expressed	chr9	18066433	18067461	+	downstream
28	LOC_Os08g02310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	879669	882286	-	downstream
28	LOC_Os02g21710	Ras family domain containing protein	gene	Ras family domain containing protein	chr2	12907605	12908006	+	downstream
28	LOC_Os11g40979	unknown	gene	unknown	chr11	24073563	24074452	-	downstream
28	LOC_Os05g51860	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	29700534	29704394	+	downstream
28	LOC_Os11g28350	CDK-activating kinase assembly factor MAT1 family protein, expressed	gene	CDK-activating kinase assembly factor MAT1 family protein, expressed	chr11	15844486	15846993	-	downstream
28	LOC_Os12g18150	ZOS12-04 - C2H2 zinc finger protein, expressed	gene	ZOS12-04 - C2H2 zinc finger protein, expressed	chr12	10465595	10475811	-	downstream
28	LOC_Os08g33220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	20707851	20709859	+	downstream
28	LOC_Os01g51660	hypothetical protein	gene	hypothetical protein	chr1	29694796	29695358	+	downstream
28	LOC_Os12g25820	O-methyltransferase, putative, expressed	gene	O-methyltransferase, putative, expressed	chr12	14972328	14974907	+	downstream
28	LOC_Os11g09710	expressed protein	gene	expressed protein	chr11	5178223	5179859	+	downstream
28	LOC_Os08g11840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	6941361	6942092	-	downstream
28	LOC_Os06g28648	unknown	gene	unknown	chr6	16316198	16316691	-	downstream
28	LOC_Os01g19250	hypothetical protein	gene	hypothetical protein	chr1	10884867	10885181	+	downstream
28	LOC_Os06g29910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17227349	17230202	+	downstream
28	LOC_Os09g38860	hypothetical protein	gene	hypothetical protein	chr9	22318388	22320008	-	downstream
28	LOC_Os01g63370	hypothetical protein	gene	hypothetical protein	chr1	36724283	36725123	+	downstream
28	LOC_Os11g14820	hypothetical protein	gene	hypothetical protein	chr11	8337713	8338129	-	downstream
28	LOC_Os02g22500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13427624	13431400	-	downstream
28	LOC_Os04g16340	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8873324	8875386	+	downstream
28	LOC_Os10g42870	peptide transporter PTR2, putative, expressed	gene	peptide transporter PTR2, putative, expressed	chr10	23043170	23046226	+	downstream
28	LOC_Os12g18530	nucleotidyltransferase, putative, expressed	gene	nucleotidyltransferase, putative, expressed	chr12	10709294	10715231	-	downstream
28	LOC_Os01g16620	expressed protein	gene	expressed protein	chr1	9430711	9434933	-	downstream
28	LOC_Os12g34250	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	20729859	20733108	+	downstream
28	LOC_Os02g25890	hypothetical protein	gene	hypothetical protein	chr2	15174970	15175332	+	downstream
28	LOC_Os11g28880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	16253806	16254976	-	downstream
28	LOC_Os05g39460	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	23084781	23088481	-	downstream
28	LOC_Os02g30670	hypothetical protein	gene	hypothetical protein	chr2	18271782	18272532	+	downstream
28	LOC_Os02g18980	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	11089999	11091500	+	downstream
28	LOC_Os11g40340	expressed protein	gene	expressed protein	chr11	23580269	23583996	-	downstream
28	LOC_Os09g28830	OsSCP42 - Putative Serine Carboxypeptidase homologue	gene	OsSCP42 - Putative Serine Carboxypeptidase homologue	chr9	17505381	17509105	-	downstream
28	LOC_Os06g49260	OsWAK65 - OsWAK receptor-like protein kinase	gene	OsWAK65 - OsWAK receptor-like protein kinase	chr6	29849304	29854923	-	downstream
28	LOC_Os05g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	11854881	11856067	-	downstream
28	LOC_Os09g31120	pirin, putative, expressed	gene	pirin, putative, expressed	chr9	18706883	18709315	+	downstream
28	LOC_Os06g42280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	25389035	25395160	+	downstream
28	LOC_Os01g08610	hAT dimerisation domain-containing protein, putative	gene	hAT dimerisation domain-containing protein, putative	chr1	4283626	4287083	+	downstream
28	LOC_Os05g10754	expressed protein	gene	expressed protein	chr5	5927447	5929893	-	downstream
28	LOC_Os06g15230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	8624241	8624517	-	downstream
28	LOC_Os03g40150	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	22308876	22312345	+	downstream
28	LOC_Os08g11770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	6896155	6897345	-	downstream
28	LOC_Os03g35640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	19738944	19742159	-	downstream
28	LOC_Os09g07930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	4062778	4067524	-	downstream
28	LOC_Os07g22300	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	12500533	12500979	-	downstream
28	LOC_Os02g12770	cytokinin dehydrogenase precursor, putative, expressed	gene	cytokinin dehydrogenase precursor, putative, expressed	chr2	6687558	6689840	+	downstream
28	LOC_Os12g15760	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8993416	8995314	-	downstream
28	LOC_Os10g08800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	4780976	4781473	-	downstream
28	LOC_Os11g06240	ATOZI1, putative, expressed	gene	ATOZI1, putative, expressed	chr11	2982452	2984123	-	downstream
28	LOC_Os05g23960	pentatricopeptide, putative	gene	pentatricopeptide, putative	chr5	13737744	13740796	-	downstream
28	LOC_Os01g27890	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr1	15580760	15582660	-	downstream
28	LOC_Os12g22030	serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed	gene	serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed	chr12	12390066	12393977	-	downstream
28	LOC_Os10g30770	inorganic phosphate transporter, putative, expressed	gene	inorganic phosphate transporter, putative, expressed	chr10	15956631	15958211	+	downstream
28	LOC_Os08g18070	hypothetical protein	gene	hypothetical protein	chr8	11066895	11068982	-	downstream
28	LOC_Os06g02640	ripening-related protein precursor, putative	gene	ripening-related protein precursor, putative	chr6	936167	939109	-	downstream
28	LOC_Os03g36810	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	20433398	20434016	+	downstream
28	LOC_Os03g45540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25694891	25695259	-	downstream
28	LOC_Os09g16870	A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence	gene	A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence	chr9	10305222	10306406	+	downstream
28	LOC_Os08g41250	signal recognition particle receptor subunit beta, putative, expressed	gene	signal recognition particle receptor subunit beta, putative, expressed	chr8	26043967	26046968	-	downstream
28	LOC_Os04g27200	hypothetical protein	gene	hypothetical protein	chr4	15899947	15900321	-	downstream
28	LOC_Os10g11160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6198331	6199293	+	downstream
28	LOC_Os07g32270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19177270	19177596	-	downstream
28	LOC_Os12g29300	CESA10 - cellulose synthase, expressed	gene	CESA10 - cellulose synthase, expressed	chr12	17361289	17362357	-	downstream
28	LOC_Os10g22610	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	11671437	11672070	-	downstream
28	LOC_Os12g01100	hypothetical protein	gene	hypothetical protein	chr12	49744	50678	+	downstream
28	LOC_Os04g58650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	34699304	34700140	-	downstream
28	LOC_Os11g26670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14810334	14816463	-	downstream
28	LOC_Os12g24290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13852652	13854807	+	downstream
28	LOC_Os04g14850	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	8346335	8348024	-	downstream
28	LOC_Os04g04540	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	2167976	2169360	-	downstream
28	LOC_Os05g06880	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	3602207	3603665	+	downstream
28	LOC_Os04g05350	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	2657879	2659366	+	downstream
28	LOC_Os04g31971	expressed protein	gene	expressed protein	chr4	18976803	18980057	+	downstream
28	LOC_Os07g05960	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	2882040	2891648	-	downstream
28	LOC_Os05g00998	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	24458	25518	-	downstream
28	LOC_Os07g10270	hypothetical protein	gene	hypothetical protein	chr7	5512501	5513921	-	downstream
28	LOC_Os08g15670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	9515585	9517158	-	downstream
28	LOC_Os01g38430	plant protein of unknown function domain containing protein	gene	plant protein of unknown function domain containing protein	chr1	21602366	21604300	-	downstream
28	LOC_Os04g14350	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	8033796	8034561	+	downstream
28	LOC_Os10g09510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5151701	5154235	+	downstream
28	LOC_Os08g06890	hypothetical protein	gene	hypothetical protein	chr8	3847490	3849258	+	downstream
28	LOC_Os10g40540	enoyl-CoA hydratase/isomerase family protein, putative, expressed	gene	enoyl-CoA hydratase/isomerase family protein, putative, expressed	chr10	21629199	21633277	-	downstream
28	LOC_Os04g46490	aquaporin protein, putative, expressed	gene	aquaporin protein, putative, expressed	chr4	27390522	27391857	-	downstream
28	LOC_Os03g48780	Cupin domain containing protein, expressed	gene	Cupin domain containing protein, expressed	chr3	27784031	27785101	-	downstream
28	LOC_Os11g24910	hypothetical protein	gene	hypothetical protein	chr11	13725414	13726028	+	downstream
28	LOC_Os07g24260	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13791993	13793958	-	downstream
28	LOC_Os05g01640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	381174	381761	+	downstream
28	LOC_Os03g01420	expressed protein	gene	expressed protein	chr3	294311	296898	-	downstream
28	LOC_Os01g28420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	15922077	15925545	-	downstream
28	LOC_Os09g22210	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	13433663	13434462	-	downstream
28	LOC_Os06g24430	hypothetical protein	gene	hypothetical protein	chr6	14314897	14315520	+	downstream
28	LOC_Os07g23310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13138146	13141368	-	downstream
28	LOC_Os06g36620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	21515350	21516699	-	downstream
28	LOC_Os09g06830	hypothetical protein	gene	hypothetical protein	chr9	3265945	3268225	-	downstream
28	LOC_Os07g16054	hypothetical protein	gene	hypothetical protein	chr7	9358581	9361315	-	downstream
28	LOC_Os03g36460	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	20194110	20194628	+	downstream
28	LOC_Os04g55420	leucine-rich repeat family protein, putative, expressed	gene	leucine-rich repeat family protein, putative, expressed	chr4	32778159	32781891	+	downstream
28	LOC_Os02g24390	hypothetical protein	gene	hypothetical protein	chr2	14140046	14140988	-	downstream
28	LOC_Os12g17000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9725933	9728945	-	downstream
28	LOC_Os12g10690	hypothetical protein	gene	hypothetical protein	chr12	5726918	5727651	-	downstream
28	LOC_Os07g23830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13456326	13459694	-	downstream
28	LOC_Os07g18260	hypothetical protein	gene	hypothetical protein	chr7	10824620	10826008	+	downstream
28	LOC_Os09g01375	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	308408	308803	-	downstream
28	LOC_Os12g34680	hypothetical protein	gene	hypothetical protein	chr12	21019319	21020325	-	downstream
28	LOC_Os06g03150	expressed protein	gene	expressed protein	chr6	1171582	1174252	+	downstream
28	LOC_Os05g18470	CRAL/TRIO domain containing protein, expressed	gene	CRAL/TRIO domain containing protein, expressed	chr5	10672260	10675576	-	downstream
28	LOC_Os05g15180	expressed protein	gene	expressed protein	chr5	8616429	8618414	-	downstream
28	LOC_Os02g17060	OsSub15 - Putative Subtilisin homologue	gene	OsSub15 - Putative Subtilisin homologue	chr2	9757893	9762117	-	downstream
28	LOC_Os10g22900	hypothetical protein	gene	hypothetical protein	chr10	11829056	11830580	-	downstream
28	LOC_Os03g29790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	16980955	16987318	-	downstream
28	LOC_Os06g27630	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	15628986	15630821	-	downstream
28	LOC_Os11g34180	uncharacterized protein family UPF0016 domain containing protein, expressed	gene	uncharacterized protein family UPF0016 domain containing protein, expressed	chr11	19542473	19547278	-	downstream
28	LOC_Os12g31640	vacuolar protein sorting-associated protein 26, putative, expressed	gene	vacuolar protein sorting-associated protein 26, putative, expressed	chr12	19027158	19032412	+	downstream
28	LOC_Os03g24960	ulp1 protease family, C-terminal catalytic domain containing protein	gene	ulp1 protease family, C-terminal catalytic domain containing protein	chr3	14247886	14252228	+	downstream
28	LOC_Os05g26194	expressed protein	gene	expressed protein	chr5	15187695	15188301	-	downstream
28	LOC_Os11g25140	hypothetical protein	gene	hypothetical protein	chr11	13852294	13853344	-	downstream
28	LOC_Os05g23300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13243386	13244702	-	downstream
28	LOC_Os04g01660	erythronate-4-phosphate dehydrogenase domain containing protein, expressed	gene	erythronate-4-phosphate dehydrogenase domain containing protein, expressed	chr4	445010	446108	+	downstream
28	LOC_Os08g26800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16278948	16280642	+	downstream
28	LOC_Os09g10054	disease resistance protein RPS2, putative, expressed	gene	disease resistance protein RPS2, putative, expressed	chr9	5470800	5490310	-	downstream
28	LOC_Os05g35030	hypothetical protein	gene	hypothetical protein	chr5	20737265	20737762	+	downstream
28	LOC_Os01g41160	FAD dependent oxidoreductase domain containing protein, expressed	gene	FAD dependent oxidoreductase domain containing protein, expressed	chr1	23299822	23301914	-	downstream
28	LOC_Os10g04780	OsFBX363 - F-box domain containing protein, expressed	gene	OsFBX363 - F-box domain containing protein, expressed	chr10	2295683	2299692	-	downstream
28	LOC_Os08g30390	unknown	gene	unknown	chr8	18692436	18692937	-	downstream
28	LOC_Os01g39350	protein kinase domain containing protein	gene	protein kinase domain containing protein	chr1	22145491	22147703	+	downstream
28	LOC_Os02g19960	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	11743444	11743953	+	downstream
28	LOC_Os11g22860	hypothetical protein	gene	hypothetical protein	chr11	12685547	12685894	-	downstream
28	LOC_Os10g29670	expressed protein	gene	expressed protein	chr10	15357087	15360397	-	downstream
28	LOC_Os12g14110	expressed protein	gene	expressed protein	chr12	7997903	8001905	-	downstream
28	LOC_Os12g03920	nodulin, putative	gene	nodulin, putative	chr12	1621020	1625198	+	downstream
28	LOC_Os12g19470	ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed	gene	ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed	chr12	11317603	11319883	+	downstream
28	LOC_Os09g09240	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	4948220	4954135	+	downstream
28	LOC_Os05g16380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9274529	9274963	-	downstream
28	LOC_Os03g38120	hypothetical protein	gene	hypothetical protein	chr3	21168240	21169187	-	downstream
28	LOC_Os05g16330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	9248257	9251589	+	downstream
28	LOC_Os01g21290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	11885829	11889032	+	downstream
28	LOC_Os03g49080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	27953305	27953799	+	downstream
28	LOC_Os06g27670	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	15661500	15662873	-	downstream
28	LOC_Os06g42050	hypothetical protein	gene	hypothetical protein	chr6	25258476	25260162	+	downstream
28	LOC_Os06g31140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	18091723	18092838	+	downstream
28	LOC_Os08g08300	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	4756376	4759470	+	downstream
28	LOC_Os02g15360	expressed protein	gene	expressed protein	chr2	8597166	8601726	-	downstream
28	LOC_Os12g20030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11646794	11648290	-	downstream
28	LOC_Os07g27890	hypothetical protein	gene	hypothetical protein	chr7	16274396	16275398	-	downstream
28	LOC_Os04g18630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10291493	10292195	-	downstream
28	LOC_Os04g26060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15147030	15150362	+	downstream
28	LOC_Os05g40690	hypothetical protein	gene	hypothetical protein	chr5	23796807	23799196	-	downstream
28	LOC_Os03g47870	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	27204682	27210283	-	downstream
28	LOC_Os07g41770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	25023947	25027290	+	downstream
28	LOC_Os07g47050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	28125426	28126668	-	downstream
28	LOC_Os06g38390	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr6	22743905	22744279	-	downstream
28	LOC_Os05g24280	hypothetical protein	gene	hypothetical protein	chr5	13984762	13985046	-	downstream
28	LOC_Os06g31230	hypothetical protein	gene	hypothetical protein	chr6	18167529	18167756	+	downstream
28	LOC_Os11g34420	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	19698690	19701913	-	downstream
28	LOC_Os04g32430	expressed protein	gene	expressed protein	chr4	19270991	19272451	+	downstream
28	LOC_Os11g09375	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	5029017	5030433	-	downstream
28	LOC_Os11g18954	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	10793973	10797670	-	downstream
28	LOC_Os07g20580	DEAD-box ATP-dependent RNA helicase, putative, expressed	gene	DEAD-box ATP-dependent RNA helicase, putative, expressed	chr7	11886129	11893428	-	downstream
28	LOC_Os08g03800	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	1815733	1816161	-	downstream
28	LOC_Os05g31785	expressed protein	gene	expressed protein	chr5	18455311	18456493	-	downstream
28	LOC_Os01g46310	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	26331001	26331384	-	downstream
28	LOC_Os11g23860	hypothetical protein	gene	hypothetical protein	chr11	13046181	13047151	-	downstream
28	LOC_Os05g23460	eukaryotic protein of unknown function DUF914 domain containing protein	gene	eukaryotic protein of unknown function DUF914 domain containing protein	chr5	13356709	13359653	+	downstream
28	LOC_Os11g32000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18387458	18390485	-	downstream
28	LOC_Os04g12080	TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed	gene	TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed	chr4	6629446	6634290	+	downstream
28	LOC_Os01g51940	hypothetical protein	gene	hypothetical protein	chr1	29853616	29854649	+	downstream
28	LOC_Os02g36120	hypothetical protein	gene	hypothetical protein	chr2	21736990	21737338	-	downstream
28	LOC_Os10g10570	hypothetical protein	gene	hypothetical protein	chr10	5854312	5855038	+	downstream
28	LOC_Os05g11470	hypothetical protein	gene	hypothetical protein	chr5	6489832	6490926	+	downstream
28	LOC_Os03g38720	proteasome maturation factor UMP1 family protein	gene	proteasome maturation factor UMP1 family protein	chr3	21488769	21493691	+	downstream
28	LOC_Os01g35800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19826346	19828964	+	downstream
28	LOC_Os07g41420	expressed protein	gene	expressed protein	chr7	24813199	24814601	-	downstream
28	LOC_Os09g07700	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	3886046	3889411	-	downstream
28	LOC_Os11g35450	leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed	gene	leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed	chr11	20303926	20307187	+	downstream
28	LOC_Os06g09570	nucleolar GTP-binding protein 1, putative, expressed	gene	nucleolar GTP-binding protein 1, putative, expressed	chr6	4869861	4873712	-	downstream
28	LOC_Os12g15620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8917084	8920104	+	downstream
28	LOC_Os07g20100	expressed protein	gene	expressed protein	chr7	11614655	11615379	+	downstream
28	LOC_Os08g13330	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr8	7919981	7923535	-	downstream
28	LOC_Os07g38310	hypothetical protein	gene	hypothetical protein	chr7	23013951	23014715	-	downstream
28	LOC_Os07g39220	BES1/BZR1 homolog protein, putative, expressed	gene	BES1/BZR1 homolog protein, putative, expressed	chr7	23482816	23484351	-	downstream
28	LOC_Os10g28914	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	14998882	14999298	-	downstream
28	LOC_Os11g12720	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	7178387	7179099	-	downstream
28	LOC_Os05g22660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12801416	12804567	-	downstream
28	LOC_Os05g24060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13809442	13812390	+	downstream
28	LOC_Os01g11510	OsMADS91 - MADS-box family gene with M-beta type-box	gene	OsMADS91 - MADS-box family gene with M-beta type-box	chr1	6190931	6192745	+	downstream
28	LOC_Os10g23160	ent-kaurenoic acid oxidase 1, putative	gene	ent-kaurenoic acid oxidase 1, putative	chr10	12015054	12016310	-	downstream
28	LOC_Os07g35990	strictosidine synthase 1 precursor, putative	gene	strictosidine synthase 1 precursor, putative	chr7	21530383	21531135	-	downstream
28	LOC_Os01g16100	translin, putative, expressed	gene	translin, putative, expressed	chr1	9066360	9070396	-	downstream
28	LOC_Os04g01010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	9521	10296	+	downstream
28	LOC_Os04g16850	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	9218757	9222938	-	downstream
28	LOC_Os06g28670	polygalacturonase, putative, expressed	gene	polygalacturonase, putative, expressed	chr6	16328397	16330466	+	downstream
28	LOC_Os10g26870	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	14053899	14058865	+	downstream
28	LOC_Os02g36010	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	21622344	21626044	-	downstream
28	LOC_Os05g23020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13071206	13072105	-	downstream
28	LOC_Os02g22530	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	13441490	13442386	-	downstream
28	LOC_Os10g18042	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr10	9072670	9074871	+	downstream
28	LOC_Os10g12232	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	6825133	6828060	-	downstream
28	LOC_Os02g18560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	10827394	10831164	+	downstream
28	LOC_Os02g18790	hypothetical protein	gene	hypothetical protein	chr2	10955205	10955979	+	downstream
28	LOC_Os03g38410	hypothetical protein	gene	hypothetical protein	chr3	21319757	21320834	-	downstream
28	LOC_Os06g14010	myb-like DNA-binding domain containing protein	gene	myb-like DNA-binding domain containing protein	chr6	7791173	7791682	-	downstream
28	LOC_Os01g40570	outer mitochondrial membrane porin, putative, expressed	gene	outer mitochondrial membrane porin, putative, expressed	chr1	22907136	22909643	-	downstream
28	LOC_Os12g10770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	5792003	5796844	+	downstream
28	LOC_Os08g42220	hypothetical protein	gene	hypothetical protein	chr8	26662267	26665458	-	downstream
28	LOC_Os07g42140	hydrolase protein, putative, expressed	gene	hydrolase protein, putative, expressed	chr7	25213548	25215626	-	downstream
28	LOC_Os01g74690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	43263362	43266621	-	downstream
28	LOC_Os04g07220	hypothetical protein	gene	hypothetical protein	chr4	3824055	3825297	-	downstream
28	LOC_Os02g45210	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	27452714	27453586	+	downstream
28	LOC_Os09g10580	hypothetical protein	gene	hypothetical protein	chr9	5770360	5771539	+	downstream
28	LOC_Os12g36250	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	22172827	22173273	-	downstream
28	LOC_Os11g19070	hypothetical protein	gene	hypothetical protein	chr11	10865731	10866496	-	downstream
28	LOC_Os11g13480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	7377611	7379764	-	downstream
28	LOC_Os01g03580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	1450477	1453682	+	downstream
28	LOC_Os07g24860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14134815	14137552	+	downstream
28	LOC_Os05g40212	expressed protein	gene	expressed protein	chr5	23554883	23555751	-	downstream
28	LOC_Os11g39860	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23293938	23294696	+	downstream
28	LOC_Os06g33960	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	19773719	19774519	-	downstream
28	LOC_Os01g58880	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	34021110	34021421	+	downstream
28	LOC_Os12g27530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16212167	16214674	+	downstream
28	LOC_Os06g29040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16548148	16548765	+	downstream
28	LOC_Os03g42320	Sec1 family transport protein, putative, expressed	gene	Sec1 family transport protein, putative, expressed	chr3	23543491	23545842	-	downstream
28	LOC_Os11g14730	expressed protein	gene	expressed protein	chr11	8297799	8298360	-	downstream
28	LOC_Os08g34530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21669900	21673597	-	downstream
28	LOC_Os02g22374	expressed protein	gene	expressed protein	chr2	13361030	13364224	-	downstream
28	LOC_Os05g28290	ranBP1 domain containing protein, expressed	gene	ranBP1 domain containing protein, expressed	chr5	16502227	16505012	+	downstream
28	LOC_Os04g45550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26762463	26765217	-	downstream
28	LOC_Os10g13760	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	7492135	7495811	-	downstream
28	LOC_Os04g04420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2098829	2102056	-	downstream
28	LOC_Os02g28790	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	17025378	17025956	-	downstream
28	LOC_Os04g18670	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	10326604	10327511	-	downstream
28	LOC_Os03g36320	hypothetical protein	gene	hypothetical protein	chr3	20142741	20143154	-	downstream
28	LOC_Os12g38700	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	23739166	23739549	-	downstream
28	LOC_Os07g33250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	19867928	19871199	+	downstream
28	LOC_Os10g07616	chalcone synthase, putative	gene	chalcone synthase, putative	chr10	4243440	4245680	+	downstream
28	LOC_Os08g11210	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	6585970	6586834	-	downstream
28	LOC_Os02g14790	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	8204967	8206392	-	downstream
28	LOC_Os12g12470	NADP-dependent oxidoreductase, putative, expressed	gene	NADP-dependent oxidoreductase, putative, expressed	chr12	6868873	6871370	+	downstream
28	LOC_Os04g22800	hypothetical protein	gene	hypothetical protein	chr4	12907172	12909666	+	downstream
28	LOC_Os12g04040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	1696203	1699494	+	downstream
28	LOC_Os04g19060	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	10569899	10571284	-	downstream
28	LOC_Os01g32590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	17869491	17870165	-	downstream
28	LOC_Os10g05030	hypothetical protein	gene	hypothetical protein	chr10	2457027	2457570	+	downstream
28	LOC_Os09g30360	caffeoyl-CoA O-methyltransferase, putative, expressed	gene	caffeoyl-CoA O-methyltransferase, putative, expressed	chr9	18473986	18475380	-	downstream
28	LOC_Os11g35240	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr11	20194159	20195777	-	downstream
28	LOC_Os07g12610	OsFBX227 - F-box domain containing protein, expressed	gene	OsFBX227 - F-box domain containing protein, expressed	chr7	7205347	7208542	-	downstream
28	LOC_Os05g13690	hypothetical protein	gene	hypothetical protein	chr5	7586321	7586710	-	downstream
28	LOC_Os03g31790	hypothetical protein	gene	hypothetical protein	chr3	18182012	18182302	+	downstream
28	LOC_Os01g47920	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	27424554	27425695	-	downstream
28	LOC_Os04g43380	Os4bglu15 - GH1 gene fragment	gene	Os4bglu15 - GH1 gene fragment	chr4	25464993	25467507	-	downstream
28	LOC_Os05g48090	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	27504284	27507588	+	downstream
28	LOC_Os05g14590	MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed	gene	MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed	chr5	8312835	8319327	+	downstream
28	LOC_Os02g25330	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	14760353	14764854	+	downstream
28	LOC_Os11g31160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	17678011	17681669	+	downstream
28	LOC_Os10g16990	expressed protein	gene	expressed protein	chr10	8435234	8438489	+	downstream
28	LOC_Os10g29590	hypothetical protein	gene	hypothetical protein	chr10	15305187	15307374	+	downstream
28	LOC_Os12g15830	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	9027198	9029378	-	downstream
28	LOC_Os08g39790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25186637	25188074	-	downstream
28	LOC_Os04g13010	OsFBX123 - F-box domain containing protein	gene	OsFBX123 - F-box domain containing protein	chr4	7172966	7173811	-	downstream
28	LOC_Os12g43450	thaumatin family domain containing protein, expressed	gene	thaumatin family domain containing protein, expressed	chr12	26926886	26927804	+	downstream
28	LOC_Os11g27290	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15233379	15234938	-	downstream
28	LOC_Os04g13600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	7591458	7594496	-	downstream
28	LOC_Os07g16320	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	9530008	9530914	-	downstream
28	LOC_Os05g04300	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1950962	1954434	-	downstream
28	LOC_Os04g28910	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16964945	16968372	+	downstream
28	LOC_Os06g28639	unknown	gene	unknown	chr6	16307991	16308169	-	downstream
28	LOC_Os06g10720	hypothetical protein	gene	hypothetical protein	chr6	5596521	5596826	+	downstream
28	LOC_Os04g27520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16094889	16100981	-	downstream
28	LOC_Os07g14860	hypothetical protein	gene	hypothetical protein	chr7	8503413	8503858	-	downstream
28	LOC_Os08g34590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	21731904	21735122	-	downstream
28	LOC_Os05g01760	lysine ketoglutarate reductase trans-splicing related 1, putative, expressed	gene	lysine ketoglutarate reductase trans-splicing related 1, putative, expressed	chr5	453836	458282	-	downstream
28	LOC_Os12g15040	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	8587701	8588933	-	downstream
28	LOC_Os01g23280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13078856	13079875	+	downstream
28	LOC_Os11g24560	protein transport protein, putative, expressed	gene	protein transport protein, putative, expressed	chr11	13551101	13558781	+	downstream
28	LOC_Os04g20164	amine oxidase precursor, putative, expressed	gene	amine oxidase precursor, putative, expressed	chr4	11227167	11234756	+	downstream
28	LOC_Os01g61260	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	35441919	35442869	-	downstream
28	LOC_Os01g18500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	10401693	10404794	-	downstream
28	LOC_Os05g30990	zinc finger protein, putative	gene	zinc finger protein, putative	chr5	17943392	17946585	-	downstream
28	LOC_Os02g18115	expressed protein	gene	expressed protein	chr2	10525182	10526918	+	downstream
28	LOC_Os12g06750	DEFL16 - Defensin and Defensin-like DEFL family	gene	DEFL16 - Defensin and Defensin-like DEFL family	chr12	3283378	3284162	+	downstream
28	LOC_Os09g25730	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	15430738	15432537	-	downstream
28	LOC_Os05g19510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11339890	11342026	+	downstream
28	LOC_Os01g60080	monocopper oxidase, putative, expressed	gene	monocopper oxidase, putative, expressed	chr1	34745809	34748471	+	downstream
28	LOC_Os10g03380	hypothetical protein	gene	hypothetical protein	chr10	1437246	1438304	-	downstream
28	LOC_Os02g20000	hypothetical protein	gene	hypothetical protein	chr2	11771411	11777938	+	downstream
28	LOC_Os06g23750	hypothetical protein	gene	hypothetical protein	chr6	13876623	13877189	+	downstream
28	LOC_Os01g19260	ATPase, putative, expressed	gene	ATPase, putative, expressed	chr1	10890786	10892786	+	downstream
28	LOC_Os07g16299	unknown	gene	unknown	chr7	9513920	9514167	-	downstream
28	LOC_Os03g30264	hypothetical protein	gene	hypothetical protein	chr3	17270152	17270802	-	downstream
28	LOC_Os09g21780	expressed protein	gene	expressed protein	chr9	13184202	13190511	-	downstream
28	LOC_Os12g35720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21704455	21707899	-	downstream
28	LOC_Os05g22400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	12653711	12654227	+	downstream
28	LOC_Os11g37800	mla1, putative	gene	mla1, putative	chr11	21919075	21923647	+	downstream
28	LOC_Os04g08600	ZOS4-05 - C2H2 zinc finger protein	gene	ZOS4-05 - C2H2 zinc finger protein	chr4	4670183	4674272	-	downstream
28	LOC_Os12g32310	hypothetical protein	gene	hypothetical protein	chr12	19473878	19475306	+	downstream
28	LOC_Os12g39140	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	24040447	24041136	+	downstream
28	LOC_Os04g50130	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	29714279	29714707	+	downstream
28	LOC_Os01g45000	hypothetical protein	gene	hypothetical protein	chr1	25531412	25531763	+	downstream
28	LOC_Os03g39310	hypothetical protein	gene	hypothetical protein	chr3	21841272	21842232	-	downstream
28	LOC_Os07g26400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	15168187	15170143	-	downstream
28	LOC_Os07g28400	CDGSH iron sulfur domain-containing protein 1, putative, expressed	gene	CDGSH iron sulfur domain-containing protein 1, putative, expressed	chr7	16598918	16601043	-	downstream
28	LOC_Os04g23849	expressed protein	gene	expressed protein	chr4	13609437	13615765	-	downstream
28	LOC_Os04g13710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7642272	7643089	-	downstream
28	LOC_Os09g27290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16590747	16592595	+	downstream
28	LOC_Os06g13770	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	7634956	7636291	-	downstream
28	LOC_Os04g35630	hypothetical protein	gene	hypothetical protein	chr4	21542872	21544032	+	downstream
28	LOC_Os08g14370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	8622650	8623363	+	downstream
28	LOC_Os09g26670	expressed protein	gene	expressed protein	chr9	16199909	16200901	-	downstream
28	LOC_Os05g30590	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	17664594	17665933	-	downstream
28	LOC_Os06g27870	signal recognition particle receptor subunit beta, putative	gene	signal recognition particle receptor subunit beta, putative	chr6	15794378	15796244	-	downstream
28	LOC_Os02g04350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	1917163	1919044	-	downstream
28	LOC_Os12g14350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	8172216	8172918	+	downstream
28	LOC_Os01g40450	2-aminoethanethiol dioxygenase, putative, expressed	gene	2-aminoethanethiol dioxygenase, putative, expressed	chr1	22834734	22839083	-	downstream
28	LOC_Os06g21960	hypothetical protein	gene	hypothetical protein	chr6	12699244	12700178	+	downstream
28	LOC_Os09g04870	hypothetical protein	gene	hypothetical protein	chr9	2586837	2588885	-	downstream
28	LOC_Os03g52430	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr3	30078480	30083146	-	downstream
28	LOC_Os04g54160	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32079181	32082812	-	downstream
28	LOC_Os01g31200	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	17058238	17061003	-	downstream
28	LOC_Os05g51940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	29748167	29748919	-	downstream
28	LOC_Os06g23430	signal recognition particle 19 kDa protein, putative, expressed	gene	signal recognition particle 19 kDa protein, putative, expressed	chr6	13676378	13680876	-	downstream
28	LOC_Os01g03770	hypothetical protein	gene	hypothetical protein	chr1	1579843	1581345	-	downstream
28	LOC_Os04g22540	hypothetical protein	gene	hypothetical protein	chr4	12757528	12758637	-	downstream
28	LOC_Os06g01520	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	315182	315772	-	downstream
28	LOC_Os10g24590	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12551397	12553377	-	downstream
28	LOC_Os08g19400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	11597900	11599334	-	downstream
28	LOC_Os05g25460	hypothetical protein	gene	hypothetical protein	chr5	14743335	14744062	+	downstream
28	LOC_Os09g36400	hypothetical protein	gene	hypothetical protein	chr9	21002611	21006961	+	downstream
28	LOC_Os06g15950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9068421	9071021	-	downstream
28	LOC_Os11g04267	hypothetical protein	gene	hypothetical protein	chr11	1767459	1769312	+	downstream
28	LOC_Os04g24390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	13974907	13977607	+	downstream
28	LOC_Os12g35370	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21472142	21475327	+	downstream
28	LOC_Os07g47160	OsFBX259 - F-box domain containing protein	gene	OsFBX259 - F-box domain containing protein	chr7	28192741	28193768	-	downstream
28	LOC_Os11g39190	NB-ARC domain containing protein, putative, expressed	gene	NB-ARC domain containing protein, putative, expressed	chr11	22867533	22871307	+	downstream
28	LOC_Os06g11240	12-oxophytodienoate reductase, putative, expressed	gene	12-oxophytodienoate reductase, putative, expressed	chr6	5893722	5895353	-	downstream
28	LOC_Os04g21450	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr4	12117387	12119034	-	downstream
28	LOC_Os03g24800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	14127460	14130758	-	downstream
28	LOC_Os04g44970	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	26420377	26423557	-	downstream
28	LOC_Os12g13445	expressed protein	gene	expressed protein	chr12	7533655	7535427	-	downstream
28	LOC_Os04g11180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6072111	6078074	-	downstream
28	LOC_Os10g14889	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7805617	7808241	-	downstream
28	LOC_Os08g23600	hypothetical protein	gene	hypothetical protein	chr8	14285325	14286501	-	downstream
28	LOC_Os01g06180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2943998	2946735	-	downstream
28	LOC_Os12g01660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	399407	400441	-	downstream
28	LOC_Os01g54969	O-methyltransferase, putative	gene	O-methyltransferase, putative	chr1	31609694	31611089	+	downstream
28	LOC_Os01g23350	hypothetical protein	gene	hypothetical protein	chr1	13129016	13130173	+	downstream
28	LOC_Os12g38590	pumilio-family RNA binding repeat containing protein, expressed	gene	pumilio-family RNA binding repeat containing protein, expressed	chr12	23669895	23679360	+	downstream
28	LOC_Os11g16690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	9251374	9251635	-	downstream
28	LOC_Os08g28460	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr8	17364845	17369517	-	downstream
28	LOC_Os04g22270	expressed protein	gene	expressed protein	chr4	12600233	12602992	+	downstream
28	LOC_Os02g01790	expressed protein	gene	expressed protein	chr2	432960	436158	-	downstream
28	LOC_Os02g22770	hypothetical protein	gene	hypothetical protein	chr2	13555768	13556195	+	downstream
28	LOC_Os11g04440	expressed protein	gene	expressed protein	chr11	1848547	1852977	-	downstream
28	LOC_Os05g19560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	11381904	11389676	-	downstream
28	LOC_Os01g55840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	32153231	32155109	-	downstream
28	LOC_Os06g28110	hypothetical protein	gene	hypothetical protein	chr6	15964218	15964427	-	downstream
28	LOC_Os09g14260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	8428231	8435616	-	downstream
28	LOC_Os09g14730	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	8749518	8753915	+	downstream
28	LOC_Os01g48120	hypothetical protein	gene	hypothetical protein	chr1	27545775	27547195	-	downstream
28	LOC_Os11g02964	FAR1 family protein	gene	FAR1 family protein	chr11	1029410	1037579	+	downstream
28	LOC_Os09g24300	hypothetical protein	gene	hypothetical protein	chr9	14440360	14440806	+	downstream
28	LOC_Os07g30710	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18179566	18180263	-	downstream
28	LOC_Os11g39630	ZOS11-08 - C2H2 zinc finger protein, expressed	gene	ZOS11-08 - C2H2 zinc finger protein, expressed	chr11	23134850	23137529	-	downstream
28	LOC_Os09g23120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	13671982	13677734	+	downstream
28	LOC_Os04g01030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	18440	29372	-	downstream
28	LOC_Os12g37310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	22866225	22867206	-	downstream
28	LOC_Os03g31944	hypothetical protein	gene	hypothetical protein	chr3	18278060	18278956	-	downstream
28	LOC_Os05g24160	double-stranded RNA binding motif containing protein, expressed	gene	double-stranded RNA binding motif containing protein, expressed	chr5	13882237	13889216	-	downstream
28	LOC_Os09g03030	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	1422154	1423774	+	downstream
28	LOC_Os03g46130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	26081840	26082208	-	downstream
28	LOC_Os09g24250	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed	gene	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed	chr9	14393486	14398473	-	downstream
28	LOC_Os07g24230	integral membrane transporter family protein, putative, expressed	gene	integral membrane transporter family protein, putative, expressed	chr7	13775874	13779346	-	downstream
28	LOC_Os09g17250	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10577655	10580546	-	downstream
28	LOC_Os08g37800	CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	gene	CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed	chr8	23939523	23944697	+	downstream
28	LOC_Os04g26410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	15391203	15393404	-	downstream
28	LOC_Os07g39410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	23604948	23607977	+	downstream
28	LOC_Os05g44470	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25818380	25819201	+	downstream
28	LOC_Os11g13630	gibberellin receptor GID1L2, putative	gene	gibberellin receptor GID1L2, putative	chr11	7458696	7459790	-	downstream
28	LOC_Os10g05360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	2642325	2644175	-	downstream
28	LOC_Os07g06148	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	2993041	2993337	-	downstream
28	LOC_Os09g07030	hypothetical protein	gene	hypothetical protein	chr9	3407880	3408122	-	downstream
28	LOC_Os08g26250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	16003896	16004653	+	downstream
28	LOC_Os09g11060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6138209	6141906	-	downstream
28	LOC_Os01g36330	hypothetical protein	gene	hypothetical protein	chr1	20144964	20145640	+	downstream
28	LOC_Os02g13460	receptor-like protein kinase 2 precursor, putative	gene	receptor-like protein kinase 2 precursor, putative	chr2	7183462	7187529	-	downstream
28	LOC_Os01g70620	hypothetical protein	gene	hypothetical protein	chr1	40882136	40882360	+	downstream
28	LOC_Os07g20270	expressed protein	gene	expressed protein	chr7	11683754	11686270	-	downstream
28	LOC_Os04g45834	DUF584 domain containing protein, putative, expressed	gene	DUF584 domain containing protein, putative, expressed	chr4	26951916	26959162	+	downstream
28	LOC_Os07g17980	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	10644805	10646469	-	downstream
28	LOC_Os06g50310	E2F-related protein, putative, expressed	gene	E2F-related protein, putative, expressed	chr6	30451440	30455224	-	downstream
28	LOC_Os12g09020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	4713440	4714194	+	downstream
28	LOC_Os02g45720	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	27810607	27814307	-	downstream
28	LOC_Os12g29420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17464046	17465971	-	downstream
28	LOC_Os07g31920	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18979030	18981343	-	downstream
28	LOC_Os12g16170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9234378	9235199	+	downstream
28	LOC_Os04g32230	hypothetical protein	gene	hypothetical protein	chr4	19145880	19147566	-	downstream
28	LOC_Os03g44580	DNA binding protein, putative, expressed	gene	DNA binding protein, putative, expressed	chr3	25099861	25102691	-	downstream
28	LOC_Os09g16580	amidase family protein, putative	gene	amidase family protein, putative	chr9	10173376	10176698	-	downstream
28	LOC_Os03g62700	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr3	35473453	35479216	-	downstream
28	LOC_Os05g42170	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	24595854	24596255	-	downstream
28	LOC_Os11g08130	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	4265355	4266062	+	downstream
28	LOC_Os09g21560	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	13040006	13043703	-	downstream
28	LOC_Os08g33320	expressed protein	gene	expressed protein	chr8	20773383	20779954	-	downstream
28	LOC_Os09g04230	hypothetical protein	gene	hypothetical protein	chr9	2232191	2234828	+	downstream
28	LOC_Os04g29190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17129937	17137183	+	downstream
28	LOC_Os06g20570	glycosyltransferase, putative, expressed	gene	glycosyltransferase, putative, expressed	chr6	11839481	11843304	-	downstream
28	LOC_Os11g27510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	15360408	15361612	-	downstream
28	LOC_Os01g39840	expressed protein	gene	expressed protein	chr1	22470841	22473368	-	downstream
28	LOC_Os05g03940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	1766666	1770939	+	downstream
28	LOC_Os08g08340	hypothetical protein	gene	hypothetical protein	chr8	4789029	4790447	-	downstream
28	LOC_Os12g30840	hypothetical protein	gene	hypothetical protein	chr12	18502869	18503601	-	downstream
28	LOC_Os10g36984	hypothetical protein	gene	hypothetical protein	chr10	19740874	19742553	-	downstream
28	LOC_Os01g19910	hypothetical protein	gene	hypothetical protein	chr1	11306260	11306790	+	downstream
28	LOC_Os11g18880	UBX domain-containing protein, putative, expressed	gene	UBX domain-containing protein, putative, expressed	chr11	10732841	10742083	-	downstream
28	LOC_Os03g49650	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	28271946	28272407	-	downstream
28	LOC_Os12g01630	hypothetical protein	gene	hypothetical protein	chr12	379395	379742	+	downstream
28	LOC_Os12g10990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	5928721	5929224	-	downstream
28	LOC_Os11g01350	ligA, putative	gene	ligA, putative	chr11	204308	204751	-	downstream
28	LOC_Os07g19570	hypothetical protein	gene	hypothetical protein	chr7	11596834	11597193	-	downstream
28	LOC_Os06g16990	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	9856524	9857170	-	downstream
28	LOC_Os04g23500	hypothetical protein	gene	hypothetical protein	chr4	13424083	13428429	-	downstream
28	LOC_Os04g25020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	14412580	14419250	-	downstream
28	LOC_Os01g34350	RNA-dependent RNA polymerase, putative, expressed	gene	RNA-dependent RNA polymerase, putative, expressed	chr1	18939343	18944621	-	downstream
28	LOC_Os08g44110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27773007	27776629	-	downstream
28	LOC_Os11g44520	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	26452103	26453539	+	downstream
28	LOC_Os03g45560	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	25703685	25704047	-	downstream
28	LOC_Os01g34570	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr1	19061378	19062922	+	downstream
28	LOC_Os09g09570	hypothetical protein	gene	hypothetical protein	chr9	5162478	5163879	-	downstream
28	LOC_Os10g21880	hypothetical protein	gene	hypothetical protein	chr10	11176758	11177030	-	downstream
28	LOC_Os11g12170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	6775928	6776626	+	downstream
28	LOC_Os06g15390	acylphosphatase, putative, expressed	gene	acylphosphatase, putative, expressed	chr6	8744257	8745007	-	downstream
28	LOC_Os11g25040	plant-specific domain TIGR01615 family protein, expressed	gene	plant-specific domain TIGR01615 family protein, expressed	chr11	13804058	13805289	+	downstream
28	LOC_Os01g63890	G10 protein, putative, expressed	gene	G10 protein, putative, expressed	chr1	37068351	37070869	-	downstream
28	LOC_Os07g42970	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein	chr7	25740020	25743886	+	downstream
28	LOC_Os11g18760	hypothetical protein	gene	hypothetical protein	chr11	10637000	10637558	-	downstream
28	LOC_Os06g17550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10177767	10178313	+	downstream
28	LOC_Os08g33720	lactate/malate dehydrogenase, putative, expressed	gene	lactate/malate dehydrogenase, putative, expressed	chr8	21051946	21054848	-	downstream
28	LOC_Os01g74630	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	43219178	43220210	-	downstream
28	LOC_Os09g03790	hypothetical protein	gene	hypothetical protein	chr9	1920818	1921186	+	downstream
28	LOC_Os02g45370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	27571685	27577976	-	downstream
28	LOC_Os10g07970	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed	gene	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed	chr10	4267880	4269564	+	downstream
28	LOC_Os05g12730	hypothetical protein	gene	hypothetical protein	chr5	7305752	7307781	-	downstream
28	LOC_Os07g37660	hypothetical protein	gene	hypothetical protein	chr7	22579078	22579493	+	downstream
28	LOC_Os05g39620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	23199973	23205656	-	downstream
28	LOC_Os12g12240	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr12	6719650	6723790	+	downstream
28	LOC_Os04g22480	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	12718486	12720199	+	downstream
28	LOC_Os06g40530	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr6	24156238	24158714	-	downstream
28	LOC_Os06g27970	FKBP12-interacting protein of 37 kDa, putative, expressed	gene	FKBP12-interacting protein of 37 kDa, putative, expressed	chr6	15862216	15871706	-	downstream
28	LOC_Os01g46540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	26495247	26498550	+	downstream
28	LOC_Os01g27020	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr1	15058396	15066528	+	downstream
28	LOC_Os12g31100	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	18664370	18666154	+	downstream
28	LOC_Os09g01380	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	308906	309412	-	downstream
28	LOC_Os02g11720	lipase, putative, expressed	gene	lipase, putative, expressed	chr2	6038222	6039636	-	downstream
28	LOC_Os02g50520	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr2	30847106	30847687	+	downstream
28	LOC_Os03g17100	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	gene	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	chr3	9497836	9498762	-	downstream
28	LOC_Os01g27350	CXE carboxylesterase, putative	gene	CXE carboxylesterase, putative	chr1	15275258	15275710	-	downstream
28	LOC_Os01g17080	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	9822075	9824946	-	downstream
28	LOC_Os02g47330	hypothetical protein	gene	hypothetical protein	chr2	28895716	28896078	+	downstream
28	LOC_Os07g17900	hypothetical protein	gene	hypothetical protein	chr7	10591374	10591604	+	downstream
28	LOC_Os05g04220	nitrogen regulatory protein P-II, putative, expressed	gene	nitrogen regulatory protein P-II, putative, expressed	chr5	1924048	1927224	-	downstream
28	LOC_Os08g35220	cyclin-dependent kinase C-3, putative, expressed	gene	cyclin-dependent kinase C-3, putative, expressed	chr8	22216732	22224774	-	downstream
28	LOC_Os06g24750	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr6	14535307	14536451	-	downstream
28	LOC_Os10g39540	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr10	21054681	21058573	+	downstream
28	LOC_Os11g09290	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	4972825	4975422	+	downstream
28	LOC_Os05g28540	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	16659801	16664102	+	downstream
28	LOC_Os04g14340	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	8028578	8033247	-	downstream
28	LOC_Os03g27430	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	15738734	15739479	-	downstream
28	LOC_Os06g22394	expressed protein	gene	expressed protein	chr6	13008939	13009620	-	downstream
28	LOC_Os07g31150	hypothetical protein	gene	hypothetical protein	chr7	18434959	18435817	-	downstream
28	LOC_Os12g06370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	3049788	3052848	-	downstream
28	LOC_Os05g01610	FYVE zinc finger domain containing protein	gene	FYVE zinc finger domain containing protein	chr5	362500	365961	+	downstream
28	LOC_Os06g20690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	11916026	11916654	-	downstream
28	LOC_Os03g43830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	24565332	24565892	+	downstream
28	LOC_Os02g27950	ataxin-2 related protein, putative, expressed	gene	ataxin-2 related protein, putative, expressed	chr2	16531342	16539876	-	downstream
28	LOC_Os04g08800	expressed protein	gene	expressed protein	chr4	4812046	4818218	-	downstream
28	LOC_Os05g06640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3430994	3433089	+	downstream
28	LOC_Os12g41270	cysteine-rich receptor-like protein kinase 20 precursor, putative	gene	cysteine-rich receptor-like protein kinase 20 precursor, putative	chr12	25559004	25564343	+	downstream
28	LOC_Os11g30120	hypothetical protein	gene	hypothetical protein	chr11	17047437	17047694	+	downstream
28	LOC_Os08g20280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	12183122	12185390	+	downstream
28	LOC_Os12g32434	hypothetical protein	gene	hypothetical protein	chr12	19535492	19536601	-	downstream
28	LOC_Os01g51590	hypothetical protein	gene	hypothetical protein	chr1	29623439	29624440	-	downstream
28	LOC_Os05g23030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13074858	13075927	+	downstream
28	LOC_Os02g57930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	35460748	35466204	+	downstream
28	LOC_Os12g15740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	8985726	8986406	-	downstream
28	LOC_Os12g32660	NB-ARC domain containing protein, expressed	gene	NB-ARC domain containing protein, expressed	chr12	19675258	19681652	-	downstream
28	LOC_Os11g43020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	25460992	25464695	-	downstream
28	LOC_Os06g19320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10984418	10985582	-	downstream
28	LOC_Os10g10214	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	5635079	5639413	-	downstream
28	LOC_Os01g74370	domain of unknown function DUF966 domain containing protein, expressed	gene	domain of unknown function DUF966 domain containing protein, expressed	chr1	43077752	43079356	-	downstream
28	LOC_Os11g34500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	19742858	19748823	+	downstream
28	LOC_Os07g30510	TKL_IRAK_DUF26-la.3 - DUF26 kinases have homology to DUF26 containing loci	gene	TKL_IRAK_DUF26-la.3 - DUF26 kinases have homology to DUF26 containing loci	chr7	18046064	18050117	-	downstream
28	LOC_Os12g24880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14259350	14262852	-	downstream
28	LOC_Os03g34230	hypothetical protein	gene	hypothetical protein	chr3	19491044	19491868	+	downstream
28	LOC_Os09g24749	unknown	gene	unknown	chr9	14744411	14744847	+	downstream
28	LOC_Os04g05940	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	3065644	3067278	-	downstream
28	LOC_Os06g37820	Leucine Rich Repeat family protein	gene	Leucine Rich Repeat family protein	chr6	22375669	22386249	-	downstream
28	LOC_Os01g64150	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	37257095	37260792	-	downstream
28	LOC_Os10g09670	hypothetical protein	gene	hypothetical protein	chr10	5248046	5249371	+	downstream
28	LOC_Os10g02950	hypothetical protein	gene	hypothetical protein	chr10	1214978	1215403	-	downstream
28	LOC_Os12g02260	nucleotidyltransferase, putative, expressed	gene	nucleotidyltransferase, putative, expressed	chr12	706530	714414	-	downstream
28	LOC_Os02g33860	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	20176345	20180268	+	downstream
28	LOC_Os01g29870	multidrug resistance protein 9, putative, expressed	gene	multidrug resistance protein 9, putative, expressed	chr1	16730618	16732693	+	downstream
28	LOC_Os10g11640	hypothetical protein	gene	hypothetical protein	chr10	6437814	6438275	+	downstream
28	LOC_Os12g30640	ZmEBE-2 protein, putative	gene	ZmEBE-2 protein, putative	chr12	18383882	18384977	+	downstream
28	LOC_Os11g17030	hypothetical protein	gene	hypothetical protein	chr11	9432725	9433120	+	downstream
28	LOC_Os07g25160	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14377588	14380325	-	downstream
28	LOC_Os05g31160	peptide chain release factor 2, putative, expressed	gene	peptide chain release factor 2, putative, expressed	chr5	18065819	18069147	+	downstream
28	LOC_Os06g17810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	10324438	10328084	+	downstream
28	LOC_Os11g11070	mRNA-capping enzyme, putative, expressed	gene	mRNA-capping enzyme, putative, expressed	chr11	6110546	6123321	-	downstream
28	LOC_Os01g51110	hypothetical protein	gene	hypothetical protein	chr1	29356493	29357010	+	downstream
28	LOC_Os06g06250	GDSL-like lipase/acylhydrolase, putative, expressed	gene	GDSL-like lipase/acylhydrolase, putative, expressed	chr6	2892582	2894870	+	downstream
28	LOC_Os05g38890	transposon protein, putative, CACTA, En/Spm sub-class, expressed	gene	transposon protein, putative, CACTA, En/Spm sub-class, expressed	chr5	22749287	22753576	+	downstream
28	LOC_Os07g15280	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	8811242	8814253	-	downstream
28	LOC_Os02g33990	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	20281683	20286618	-	downstream
28	LOC_Os03g09950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	4966249	4966494	-	downstream
28	LOC_Os01g29250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16393654	16396739	-	downstream
28	LOC_Os12g02370	chalcone--flavonone isomerase, putative, expressed	gene	chalcone--flavonone isomerase, putative, expressed	chr12	765434	767581	-	downstream
28	LOC_Os02g17480	expressed protein	gene	expressed protein	chr2	10066676	10067446	-	downstream
28	LOC_Os04g17120	formin-like protein 20, putative	gene	formin-like protein 20, putative	chr4	9367818	9370901	-	downstream
28	LOC_Os11g03760	expressed protein	gene	expressed protein	chr11	1471832	1476591	-	downstream
28	LOC_Os09g22140	hypothetical protein	gene	hypothetical protein	chr9	13404183	13404452	+	downstream
28	LOC_Os04g20019	unknown	gene	unknown	chr4	11147116	11147586	+	downstream
28	LOC_Os05g30050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	17326120	17327517	-	downstream
28	LOC_Os09g20770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	12511574	12516407	+	downstream
28	LOC_Os04g05600	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr4	2845308	2845760	+	downstream
28	LOC_Os11g47436	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	28051752	28054269	+	downstream
28	LOC_Os06g40280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23989809	23992668	-	downstream
28	LOC_Os05g03270	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	1322864	1326564	-	downstream
28	LOC_Os06g38790	ZmEBE protein, putative	gene	ZmEBE protein, putative	chr6	23022773	23025628	-	downstream
28	LOC_Os11g04610	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	1959939	1960652	+	downstream
28	LOC_Os04g45310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	26596062	26597894	-	downstream
28	LOC_Os06g14879	unknown	gene	unknown	chr6	8454482	8454726	-	downstream
28	LOC_Os03g29550	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr3	16840154	16841647	-	downstream
28	LOC_Os11g34230	expressed protein	gene	expressed protein	chr11	19578918	19582901	-	downstream
28	LOC_Os05g44230	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	25670015	25670490	+	downstream
28	LOC_Os11g09160	B3 DNA binding domain containing protein, expressed	gene	B3 DNA binding domain containing protein, expressed	chr11	4890449	4897025	-	downstream
28	LOC_Os09g14110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8354913	8361135	+	downstream
28	LOC_Os11g30920	transposon protein, putative, Mariner sub-class	gene	transposon protein, putative, Mariner sub-class	chr11	17525043	17527706	+	downstream
28	LOC_Os11g15624	expressed protein	gene	expressed protein	chr11	8859071	8861891	-	downstream
28	LOC_Os08g17470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10697518	10699678	-	downstream
28	LOC_Os01g24510	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	13821736	13822730	-	downstream
28	LOC_Os10g31400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	16395942	16396806	-	downstream
28	LOC_Os08g35520	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	22380612	22386862	-	downstream
28	LOC_Os12g24550	expressed protein	gene	expressed protein	chr12	14024035	14034695	-	downstream
28	LOC_Os09g37810	S-locus-specific glycoprotein precursor, putative	gene	S-locus-specific glycoprotein precursor, putative	chr9	21782574	21784157	-	downstream
28	LOC_Os05g07280	expressed protein	gene	expressed protein	chr5	3856555	3859234	-	downstream
28	LOC_Os10g20139	hypothetical protein	gene	hypothetical protein	chr10	10036621	10041289	+	downstream
28	LOC_Os09g10350	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5654552	5656370	+	downstream
28	LOC_Os07g49370	glycosyltransferase family 43 protein, putative, expressed	gene	glycosyltransferase family 43 protein, putative, expressed	chr7	29564832	29570722	-	downstream
28	LOC_Os03g46610	DEAD-box ATP-dependent RNA helicase, putative, expressed	gene	DEAD-box ATP-dependent RNA helicase, putative, expressed	chr3	26373800	26378548	-	downstream
28	LOC_Os02g48220	expressed protein	gene	expressed protein	chr2	29517485	29522459	-	downstream
28	LOC_Os04g08410	ELM2 domain containing protein, putative, expressed	gene	ELM2 domain containing protein, putative, expressed	chr4	4504408	4509487	-	downstream
28	LOC_Os04g35440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	21398367	21400271	+	downstream
28	LOC_Os09g08730	pumilio domain-containing protein, putative	gene	pumilio domain-containing protein, putative	chr9	4599910	4604598	-	downstream
28	LOC_Os12g43850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	27186781	27191737	+	downstream
28	LOC_Os05g33170	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	19390079	19391260	-	downstream
28	LOC_Os03g35849	expressed protein	gene	expressed protein	chr3	19863206	19865751	-	downstream
28	LOC_Os01g05610	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	gene	Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed	chr1	2673400	2674373	+	downstream
28	LOC_Os01g33270	hypothetical protein	gene	hypothetical protein	chr1	18337910	18338398	+	downstream
28	LOC_Os11g17370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	9674104	9676219	+	downstream
28	LOC_Os03g29710	hypothetical protein	gene	hypothetical protein	chr3	16931370	16934256	-	downstream
28	LOC_Os08g35030	hypothetical protein	gene	hypothetical protein	chr8	22063467	22064964	-	downstream
28	LOC_Os03g39640	CBS domain containing protein, expressed	gene	CBS domain containing protein, expressed	chr3	22014658	22028247	-	downstream
28	LOC_Os02g55729	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	34122248	34125907	+	downstream
28	LOC_Os01g66440	hypothetical protein	gene	hypothetical protein	chr1	38573072	38579064	+	downstream
28	LOC_Os02g55000	zinc finger CCCH-type with G patch domain-containing protein, putative, expressed	gene	zinc finger CCCH-type with G patch domain-containing protein, putative, expressed	chr2	33688851	33692709	-	downstream
28	LOC_Os06g29170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16639068	16644642	-	downstream
28	LOC_Os07g30460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18024607	18029073	-	downstream
28	LOC_Os01g31320	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17135901	17136401	-	downstream
28	LOC_Os06g01030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	10524	17197	-	downstream
28	LOC_Os05g12524	unknown	gene	unknown	chr5	7196833	7197547	+	downstream
28	LOC_Os08g13650	hypothetical protein	gene	hypothetical protein	chr8	8118674	8122234	+	downstream
28	LOC_Os12g43150	hypothetical protein	gene	hypothetical protein	chr12	26760625	26764744	-	downstream
28	LOC_Os01g12600	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr1	6933782	6937200	-	downstream
28	LOC_Os11g26060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14442006	14443570	-	downstream
28	LOC_Os12g09210	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr12	4806479	4809275	-	downstream
28	LOC_Os06g39770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23621875	23623844	-	downstream
28	LOC_Os03g39830	expressed protein	gene	expressed protein	chr3	22148830	22150119	-	downstream
28	LOC_Os09g10020	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	5455318	5460131	-	downstream
28	LOC_Os11g22770	hypothetical protein	gene	hypothetical protein	chr11	12635398	12636033	-	downstream
28	LOC_Os04g13180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7265953	7276625	-	downstream
28	LOC_Os09g04680	photosystem II P680 chlorophyll A apoprotein, putative	gene	photosystem II P680 chlorophyll A apoprotein, putative	chr9	2493946	2495364	+	downstream
28	LOC_Os09g25340	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	15185138	15188343	+	downstream
28	LOC_Os02g33350	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	19813045	19814436	-	downstream
28	LOC_Os04g32900	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	19702489	19702956	-	downstream
28	LOC_Os07g23620	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	13348700	13349548	+	downstream
28	LOC_Os11g17090	hypothetical protein	gene	hypothetical protein	chr11	9474265	9476125	-	downstream
28	LOC_Os09g10000	expressed protein	gene	expressed protein	chr9	5444591	5449231	-	downstream
28	LOC_Os09g03400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1675148	1676592	+	downstream
28	LOC_Os03g37670	OsMADS86 - MADS-box family gene with M-gamma type-box	gene	OsMADS86 - MADS-box family gene with M-gamma type-box	chr3	20890014	20893564	-	downstream
28	LOC_Os11g44470	hypothetical protein	gene	hypothetical protein	chr11	26436034	26436666	+	downstream
28	LOC_Os09g17270	hypothetical protein	gene	hypothetical protein	chr9	10583691	10587885	-	downstream
28	LOC_Os05g18540	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	10728700	10736134	+	downstream
28	LOC_Os01g31660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	17329341	17331766	-	downstream
28	LOC_Os12g20390	expressed protein	gene	expressed protein	chr12	11901981	11904628	-	downstream
28	LOC_Os04g54690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	32319596	32322859	+	downstream
28	LOC_Os09g27800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	16912698	16917173	+	downstream
28	LOC_Os03g02620	hypothetical protein	gene	hypothetical protein	chr3	965243	965590	+	downstream
28	LOC_Os09g40010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	22948956	22952110	+	downstream
28	LOC_Os06g30901	HEAT repeat family protein, putative, expressed	gene	HEAT repeat family protein, putative, expressed	chr6	17946256	17969693	-	downstream
28	LOC_Os02g01649	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	367563	368905	-	downstream
28	LOC_Os06g28530	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr6	16234163	16236118	-	downstream
28	LOC_Os11g47420	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27999185	28002486	+	downstream
28	LOC_Os03g31190	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	17760400	17760849	-	downstream
28	LOC_Os12g12530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	6898518	6899015	+	downstream
28	LOC_Os12g01590	expressed protein	gene	expressed protein	chr12	354523	358361	-	downstream
28	LOC_Os02g40220	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr2	24327763	24328803	+	downstream
28	LOC_Os05g36390	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	21472895	21475062	-	downstream
28	LOC_Os12g16460	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9421649	9423296	-	downstream
28	LOC_Os12g38960	ZOS12-07 - C2H2 zinc finger protein, expressed	gene	ZOS12-07 - C2H2 zinc finger protein, expressed	chr12	23918702	23922532	-	downstream
28	LOC_Os01g36010	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	19924570	19927053	+	downstream
28	LOC_Os11g41470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	24407835	24410865	-	downstream
28	LOC_Os07g30840	proteasome subunit, putative, expressed	gene	proteasome subunit, putative, expressed	chr7	18252481	18256984	-	downstream
28	LOC_Os06g11550	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	6121038	6122369	-	downstream
28	LOC_Os09g03050	hypothetical protein	gene	hypothetical protein	chr9	1439949	1440158	-	downstream
28	LOC_Os09g16820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10274870	10275205	+	downstream
28	LOC_Os03g47804	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	27132520	27133086	-	downstream
28	LOC_Os02g15200	hypothetical protein	gene	hypothetical protein	chr2	8479274	8479606	+	downstream
28	LOC_Os12g18990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	11020707	11021345	+	downstream
28	LOC_Os02g06220	receptor protein kinase-like protein At4g34220 precursor, putative	gene	receptor protein kinase-like protein At4g34220 precursor, putative	chr2	3113443	3114237	+	downstream
28	LOC_Os04g01210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	146420	148785	-	downstream
28	LOC_Os03g44110	phosphonate metabolism protein-related, putative	gene	phosphonate metabolism protein-related, putative	chr3	24782037	24784776	-	downstream
28	LOC_Os08g17340	hypothetical protein	gene	hypothetical protein	chr8	10607906	10608898	+	downstream
28	LOC_Os01g32540	acanthoscurrin-2 precursor, putative	gene	acanthoscurrin-2 precursor, putative	chr1	17845192	17845488	-	downstream
28	LOC_Os10g13540	hypothetical protein	gene	hypothetical protein	chr10	7345711	7345959	-	downstream
28	LOC_Os02g10930	hypothetical protein	gene	hypothetical protein	chr2	5806604	5806954	+	downstream
28	LOC_Os03g30990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17647431	17653295	-	downstream
28	LOC_Os01g37650	esterase, putative, expressed	gene	esterase, putative, expressed	chr1	21061284	21062673	-	downstream
28	LOC_Os10g02190	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	751029	751559	+	downstream
28	LOC_Os02g16950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	9662975	9668952	+	downstream
28	LOC_Os12g35950	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	21939568	21942444	+	downstream
28	LOC_Os03g33010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	18871865	18872473	-	downstream
28	LOC_Os03g61360	hydrolase, alpha/beta fold family domain containing protein, expressed	gene	hydrolase, alpha/beta fold family domain containing protein, expressed	chr3	34818351	34821814	-	downstream
28	LOC_Os09g12050	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6802261	6805757	+	downstream
28	LOC_Os06g01060	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	39328	47391	-	downstream
28	LOC_Os07g20200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	11656379	11659679	+	downstream
28	LOC_Os08g05840	DNA topoisomerase 1, putative, expressed	gene	DNA topoisomerase 1, putative, expressed	chr8	3135747	3141894	+	downstream
28	LOC_Os07g31040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	18379261	18381678	+	downstream
28	LOC_Os06g15630	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8853014	8854636	+	downstream
28	LOC_Os07g49050	hypothetical protein	gene	hypothetical protein	chr7	29369555	29370706	-	downstream
28	LOC_Os04g19440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10823709	10824868	-	downstream
28	LOC_Os02g29830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17736150	17737987	-	downstream
28	LOC_Os01g48470	RUNX1 protein, putative	gene	RUNX1 protein, putative	chr1	27784654	27785167	+	downstream
28	LOC_Os09g15840	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr9	9672999	9673694	-	downstream
28	LOC_Os06g14920	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8467007	8470274	+	downstream
28	LOC_Os07g45820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27343790	27345139	-	downstream
28	LOC_Os11g05250	hypothetical protein	gene	hypothetical protein	chr11	2320717	2323376	+	downstream
28	LOC_Os05g08490	cytokinin-O-glucosyltransferase 1, putative	gene	cytokinin-O-glucosyltransferase 1, putative	chr5	4635417	4636342	+	downstream
28	LOC_Os05g33780	hypothetical protein	gene	hypothetical protein	chr5	19840036	19840398	-	downstream
28	LOC_Os02g54400	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	33328089	33331789	-	downstream
28	LOC_Os09g10280	hypothetical protein	gene	hypothetical protein	chr9	5600227	5601061	-	downstream
28	LOC_Os11g25060	flavonol synthase/flavanone 3-hydroxylase, putative	gene	flavonol synthase/flavanone 3-hydroxylase, putative	chr11	13821458	13827174	+	downstream
28	LOC_Os04g32560	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed	gene	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed	chr4	19429322	19435953	-	downstream
28	LOC_Os02g27530	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	16291477	16294253	-	downstream
28	LOC_Os02g16880	protein of unknown function DUF502 domain containing protein, expressed	gene	protein of unknown function DUF502 domain containing protein, expressed	chr2	9617781	9623833	-	downstream
28	LOC_Os07g25850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	14844101	14846001	+	downstream
28	LOC_Os05g18220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10478162	10478845	-	downstream
28	LOC_Os08g15490	hypothetical protein	gene	hypothetical protein	chr8	9419333	9420354	-	downstream
28	LOC_Os07g39650	hypothetical protein	gene	hypothetical protein	chr7	23765657	23766824	+	downstream
28	LOC_Os02g44120	ZOS2-13 - C2H2 zinc finger protein, expressed	gene	ZOS2-13 - C2H2 zinc finger protein, expressed	chr2	26662927	26665275	+	downstream
28	LOC_Os02g15530	hypothetical protein	gene	hypothetical protein	chr2	8706393	8707266	-	downstream
28	LOC_Os06g06100	dihydroneopterin aldolase, putative, expressed	gene	dihydroneopterin aldolase, putative, expressed	chr6	2814948	2816061	-	downstream
28	LOC_Os05g04320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	1958741	1960903	-	downstream
28	LOC_Os02g27890	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	16503874	16504341	-	downstream
28	LOC_Os01g62140	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	35971819	35972616	-	downstream
28	LOC_Os07g46010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	27453169	27454762	+	downstream
28	LOC_Os08g15510	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	9433853	9436880	-	downstream
28	LOC_Os03g30070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	17146166	17149498	+	downstream
28	LOC_Os05g14450	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	8160573	8163878	+	downstream
28	LOC_Os09g03660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	1838844	1841929	-	downstream
28	LOC_Os12g19740	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr12	11492417	11495119	+	downstream
28	LOC_Os10g32658	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr10	17034199	17035335	-	downstream
28	LOC_Os12g28670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	16937370	16938023	-	downstream
28	LOC_Os10g30020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15508941	15512531	-	downstream
28	LOC_Os09g07520	hypothetical protein	gene	hypothetical protein	chr9	3769533	3769862	-	downstream
28	LOC_Os02g44420	conserved hypothetical protein	gene	conserved hypothetical protein	chr2	26894170	26894981	+	downstream
28	LOC_Os12g26880	plastocyanin-like domain containing protein, putative, expressed	gene	plastocyanin-like domain containing protein, putative, expressed	chr12	15755946	15757781	+	downstream
28	LOC_Os04g22150	hypothetical protein	gene	hypothetical protein	chr4	12540299	12541299	-	downstream
28	LOC_Os06g15420	asparagine synthetase, putative, expressed	gene	asparagine synthetase, putative, expressed	chr6	8757770	8764754	-	downstream
28	LOC_Os02g29320	expressed protein	gene	expressed protein	chr2	17410513	17413493	+	downstream
28	LOC_Os05g20570	invertase/pectin methylesterase inhibitor family protein, putative, expressed	gene	invertase/pectin methylesterase inhibitor family protein, putative, expressed	chr5	12069435	12070495	+	downstream
28	LOC_Os06g30330	U-box domain containing protein, putative	gene	U-box domain containing protein, putative	chr6	17518054	17518602	+	downstream
28	LOC_Os08g12600	expressed protein	gene	expressed protein	chr8	7450368	7451406	+	downstream
28	LOC_Os08g42130	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	26619638	26622929	+	downstream
28	LOC_Os03g41920	expressed protein	gene	expressed protein	chr3	23278876	23283741	-	downstream
28	LOC_Os07g24070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13646577	13648717	+	downstream
28	LOC_Os04g03940	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	1791156	1796294	+	downstream
28	LOC_Os06g17050	hypothetical protein	gene	hypothetical protein	chr6	9888300	9888719	-	downstream
28	LOC_Os10g17990	phosphatidate cytidylyltransferase, putative, expressed	gene	phosphatidate cytidylyltransferase, putative, expressed	chr10	9049394	9055387	-	downstream
28	LOC_Os01g40800	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	23051385	23054468	+	downstream
28	LOC_Os05g23270	hypothetical protein	gene	hypothetical protein	chr5	13228923	13230469	-	downstream
28	LOC_Os04g04610	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	2199904	2201785	-	downstream
28	LOC_Os11g16600	hypothetical protein	gene	hypothetical protein	chr11	9198469	9199826	-	downstream
28	LOC_Os05g01120	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr5	101365	104149	-	downstream
28	LOC_Os01g66400	hypothetical protein	gene	hypothetical protein	chr1	38558094	38558626	+	downstream
28	LOC_Os07g39600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	23732255	23733712	+	downstream
28	LOC_Os04g32404	expressed protein	gene	expressed protein	chr4	19258083	19263427	-	downstream
28	LOC_Os01g32940	hypothetical protein	gene	hypothetical protein	chr1	18078382	18079254	-	downstream
28	LOC_Os09g25650	GEX2, putative, expressed	gene	GEX2, putative, expressed	chr9	15407311	15414547	-	downstream
28	LOC_Os11g03470	bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed	gene	bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed	chr11	1328411	1332416	-	downstream
28	LOC_Os06g29320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16745314	16750068	+	downstream
28	LOC_Os01g34030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18730172	18734110	+	downstream
28	LOC_Os05g27510	hypothetical protein	gene	hypothetical protein	chr5	15944273	15945236	+	downstream
28	LOC_Os12g39050	hypothetical protein	gene	hypothetical protein	chr12	23994523	23995360	+	downstream
28	LOC_Os10g12760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7136731	7143360	-	downstream
28	LOC_Os06g32320	THION11 - Plant thionin family protein precursor	gene	THION11 - Plant thionin family protein precursor	chr6	18809317	18811262	-	downstream
28	LOC_Os01g34650	unknown	gene	unknown	chr1	19107604	19108491	+	downstream
28	LOC_Os08g16080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	9803293	9806993	-	downstream
28	LOC_Os05g48340	proteasome-related, putative, expressed	gene	proteasome-related, putative, expressed	chr5	27649707	27655256	+	downstream
28	LOC_Os10g17540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	8778295	8780478	+	downstream
28	LOC_Os06g39080	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed	chr6	23203563	23205056	-	downstream
28	LOC_Os02g21900	40S ribosomal protein S7, putative	gene	40S ribosomal protein S7, putative	chr2	13025539	13026579	-	downstream
28	LOC_Os07g12480	receptor protein kinase, putative	gene	receptor protein kinase, putative	chr7	7109762	7111744	-	downstream
28	LOC_Os07g01450	DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed	gene	DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed	chr7	291640	293566	-	downstream
28	LOC_Os03g01500	hypothetical protein	gene	hypothetical protein	chr3	323858	324980	-	downstream
28	LOC_Os04g21140	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	11890746	11896211	+	downstream
28	LOC_Os12g13750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	7753330	7755881	+	downstream
28	LOC_Os07g17620	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10404493	10410930	-	downstream
28	LOC_Os07g46950	ligA, putative, expressed	gene	ligA, putative, expressed	chr7	28060383	28062272	+	downstream
28	LOC_Os04g42800	photosystem-II repair protein, putative, expressed	gene	photosystem-II repair protein, putative, expressed	chr4	25155165	25156851	-	downstream
28	LOC_Os12g24910	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	14296913	14298753	+	downstream
28	LOC_Os04g55190	SPOC domain containing protein, putative, expressed	gene	SPOC domain containing protein, putative, expressed	chr4	32622756	32628041	-	downstream
28	LOC_Os08g22600	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13592830	13593544	-	downstream
28	LOC_Os06g39180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23257758	23263522	-	downstream
28	LOC_Os02g38598	expressed protein	gene	expressed protein	chr2	23328325	23329472	+	downstream
28	LOC_Os10g16500	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	8157635	8158432	+	downstream
28	LOC_Os08g15430	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	9388256	9388745	-	downstream
28	LOC_Os06g31660	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18397412	18399213	-	downstream
28	LOC_Os12g09050	hypothetical protein	gene	hypothetical protein	chr12	4728454	4729068	+	downstream
28	LOC_Os07g31700	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	18820316	18829346	+	downstream
28	LOC_Os10g10990	transcription initiation factor IIF, alpha subunit domain containing protein, expressed	gene	transcription initiation factor IIF, alpha subunit domain containing protein, expressed	chr10	6096507	6104381	-	downstream
28	LOC_Os11g35620	expressed protein	gene	expressed protein	chr11	20419023	20421527	+	downstream
28	LOC_Os04g57060	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	33822973	33827939	-	downstream
28	LOC_Os12g02920	hypothetical protein	gene	hypothetical protein	chr12	1080583	1081152	-	downstream
28	LOC_Os06g30350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	17533154	17533486	+	downstream
28	LOC_Os11g47250	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	27889226	27894754	+	downstream
28	LOC_Os02g30920	hypothetical protein	gene	hypothetical protein	chr2	18463256	18464808	-	downstream
28	LOC_Os04g56810	hypothetical protein	gene	hypothetical protein	chr4	33692391	33692882	+	downstream
28	LOC_Os06g19670	OsFBX196 - F-box domain containing protein	gene	OsFBX196 - F-box domain containing protein	chr6	11227951	11232370	-	downstream
28	LOC_Os12g23360	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	13216602	13218012	-	downstream
28	LOC_Os11g11810	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr11	6550267	6557440	+	downstream
28	LOC_Os06g26120	hypothetical protein	gene	hypothetical protein	chr6	15279892	15280654	-	downstream
28	LOC_Os01g38270	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	21466870	21468492	+	downstream
28	LOC_Os10g01890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	569588	572995	-	downstream
28	LOC_Os05g39020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	22825090	22825928	-	downstream
28	LOC_Os06g14950	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8483979	8484575	+	downstream
28	LOC_Os03g31180	diacylglycerol kinase 1, putative, expressed	gene	diacylglycerol kinase 1, putative, expressed	chr3	17753599	17759915	+	downstream
28	LOC_Os11g33250	expressed protein	gene	expressed protein	chr11	19190502	19192496	+	downstream
28	LOC_Os01g37130	protein phosphatase 2C, putative, expressed	gene	protein phosphatase 2C, putative, expressed	chr1	20737538	20741386	+	downstream
28	LOC_Os10g06130	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr10	3112799	3117851	-	downstream
28	LOC_Os05g30950	MSP domain containing protein, putative, expressed	gene	MSP domain containing protein, putative, expressed	chr5	17904547	17910190	-	downstream
28	LOC_Os02g11640	UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed	gene	UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed	chr2	5978154	5979961	-	downstream
28	LOC_Os04g07260	hypothetical protein	gene	hypothetical protein	chr4	3848924	3853495	+	downstream
28	LOC_Os10g10434	dimethyladenosine transferase, putative, expressed	gene	dimethyladenosine transferase, putative, expressed	chr10	5747475	5753009	+	downstream
28	LOC_Os03g42820	LIM domain-containing protein, putative, expressed	gene	LIM domain-containing protein, putative, expressed	chr3	23853318	23860115	+	downstream
28	LOC_Os02g09100	isoleucyl-tRNA synthetase, cytoplasmic, putative, expressed	gene	isoleucyl-tRNA synthetase, cytoplasmic, putative, expressed	chr2	4658133	4668899	-	downstream
28	LOC_Os12g15960	CRP5 - Cysteine-rich family protein precursor, putative	gene	CRP5 - Cysteine-rich family protein precursor, putative	chr12	9095141	9097127	+	downstream
28	LOC_Os10g36370	heat shock protein DnaJ, putative, expressed	gene	heat shock protein DnaJ, putative, expressed	chr10	19359512	19368335	-	downstream
28	LOC_Os10g06540	vesicle-associated membrane protein, putative, expressed	gene	vesicle-associated membrane protein, putative, expressed	chr10	3356988	3359531	-	downstream
28	LOC_Os04g10020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	5384287	5387984	-	downstream
28	LOC_Os11g20720	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11994124	11995983	+	downstream
28	LOC_Os07g10256	mitosis protein dim1, putative, expressed	gene	mitosis protein dim1, putative, expressed	chr7	5507052	5509796	-	downstream
28	LOC_Os09g01006	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	41879	42358	+	downstream
28	LOC_Os11g29650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	16719344	16721934	-	downstream
28	LOC_Os08g11640	hypothetical protein	gene	hypothetical protein	chr8	6830608	6832308	+	downstream
28	LOC_Os05g31950	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	18550164	18550734	+	downstream
28	LOC_Os01g08330	aspartic proteinase nepenthesin-1 precursor, putative	gene	aspartic proteinase nepenthesin-1 precursor, putative	chr1	4080316	4081680	+	downstream
28	LOC_Os03g61170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	34736495	34738210	-	downstream
28	LOC_Os04g13110	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	7226872	7233048	-	downstream
28	LOC_Os11g17580	enoyl-CoA hydratase/isomerase family protein	gene	enoyl-CoA hydratase/isomerase family protein	chr11	9782584	9783291	-	downstream
28	LOC_Os06g16120	expressed protein	gene	expressed protein	chr6	9176214	9177444	-	downstream
28	LOC_Os05g16510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	9368074	9368460	-	downstream
28	LOC_Os03g48980	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr3	27889437	27890963	+	downstream
28	LOC_Os12g27670	tetratricopeptide TPR_4, putative	gene	tetratricopeptide TPR_4, putative	chr12	16301342	16302175	-	downstream
28	LOC_Os10g06010	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	3045447	3049201	-	downstream
28	LOC_Os12g40690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	25152937	25158833	-	downstream
28	LOC_Os03g62300	hypothetical protein	gene	hypothetical protein	chr3	35284514	35292565	+	downstream
28	LOC_Os03g02874	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	1130613	1134168	-	downstream
28	LOC_Os06g16520	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	9480207	9483539	+	downstream
28	LOC_Os12g29620	plant protein of unknown function domain containing protein	gene	plant protein of unknown function domain containing protein	chr12	17662524	17664058	+	downstream
28	LOC_Os06g02670	hypothetical protein	gene	hypothetical protein	chr6	951808	952278	+	downstream
28	LOC_Os01g60970	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	35271615	35276675	+	downstream
28	LOC_Os08g31180	hypothetical protein	gene	hypothetical protein	chr8	19274607	19275047	+	downstream
28	LOC_Os04g32570	MYB protein, putative	gene	MYB protein, putative	chr4	19436425	19437216	-	downstream
28	LOC_Os04g39570	OsWRKY35v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed	gene	OsWRKY35v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed	chr4	23394694	23402045	-	downstream
28	LOC_Os04g21680	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	12253093	12256365	+	downstream
28	LOC_Os04g28940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	16982288	16985158	-	downstream
28	LOC_Os09g25210	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	15100741	15101103	-	downstream
28	LOC_Os10g23120	pyridoxamine 5'-phosphate oxidase family protein, putative, expressed	gene	pyridoxamine 5'-phosphate oxidase family protein, putative, expressed	chr10	11996425	12002475	-	downstream
28	LOC_Os12g14150	expressed protein	gene	expressed protein	chr12	8028826	8034093	+	downstream
28	LOC_Os03g06530	hypothetical protein	gene	hypothetical protein	chr3	3287538	3288074	-	downstream
28	LOC_Os02g26900	hypothetical protein	gene	hypothetical protein	chr2	15790833	15791363	+	downstream
28	LOC_Os10g03800	hypothetical protein	gene	hypothetical protein	chr10	1716144	1716704	-	downstream
28	LOC_Os05g27440	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	15892946	15893239	-	downstream
28	LOC_Os09g17390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	10633949	10638282	-	downstream
28	LOC_Os12g17450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	9997186	10001032	+	downstream
28	LOC_Os03g35510	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	19680325	19680840	-	downstream
28	LOC_Os07g08470	hypothetical protein	gene	hypothetical protein	chr7	4360091	4360318	+	downstream
28	LOC_Os11g44660	protein kinase, putative, expressed	gene	protein kinase, putative, expressed	chr11	26535916	26538083	+	downstream
28	LOC_Os07g33120	expressed protein	gene	expressed protein	chr7	19778506	19781715	+	downstream
28	LOC_Os02g20820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	12305834	12306536	-	downstream
28	LOC_Os03g07930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	4046999	4050560	+	downstream
28	LOC_Os10g21380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	10871739	10873804	-	downstream
28	LOC_Os05g26190	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15182537	15184439	-	downstream
28	LOC_Os09g19620	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	11726504	11728083	+	downstream
28	LOC_Os05g26954	saposin-like type B, region 1 family protein, putative, expressed	gene	saposin-like type B, region 1 family protein, putative, expressed	chr5	15599198	15605034	-	downstream
28	LOC_Os10g24900	OsFBK22 - F-box domain and kelch repeat containing protein, expressed	gene	OsFBK22 - F-box domain and kelch repeat containing protein, expressed	chr10	12744508	12747671	-	downstream
28	LOC_Os12g38030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	23332989	23338947	-	downstream
28	LOC_Os04g43890	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	25811263	25814598	+	downstream
28	LOC_Os02g50090	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	30582283	30585399	+	downstream
28	LOC_Os02g55640	proteasome maturation factor UMP1 family protein, expressed	gene	proteasome maturation factor UMP1 family protein, expressed	chr2	34069938	34072291	-	downstream
28	LOC_Os02g50300	expressed protein	gene	expressed protein	chr2	30699155	30699565	-	downstream
28	LOC_Os05g08040	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	4348357	4350844	-	downstream
28	LOC_Os01g13350	25.3 kDa vesicle transport protein, putative, expressed	gene	25.3 kDa vesicle transport protein, putative, expressed	chr1	7436788	7442252	-	downstream
28	LOC_Os12g40670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	25145244	25147347	+	downstream
28	LOC_Os10g17454	RNA recognition motif containing protein, expressed	gene	RNA recognition motif containing protein, expressed	chr10	8715810	8725381	-	downstream
28	LOC_Os03g47550	expressed protein	gene	expressed protein	chr3	26878778	26881348	-	downstream
28	LOC_Os11g32830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	18928065	18928391	+	downstream
28	LOC_Os06g50240	thaumatin, putative, expressed	gene	thaumatin, putative, expressed	chr6	30419080	30422000	+	downstream
28	LOC_Os07g21980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12291192	12294860	-	downstream
28	LOC_Os05g03020	ZOS5-03 - C2H2 zinc finger protein, expressed	gene	ZOS5-03 - C2H2 zinc finger protein, expressed	chr5	1142011	1145736	+	downstream
28	LOC_Os09g12330	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	7025975	7030101	-	downstream
28	LOC_Os05g24080	hypothetical protein	gene	hypothetical protein	chr5	13822099	13823009	+	downstream
28	LOC_Os12g34890	acyl carrier protein, putative, expressed	gene	acyl carrier protein, putative, expressed	chr12	21206933	21209969	-	downstream
28	LOC_Os07g14570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8307303	8311707	-	downstream
28	LOC_Os06g49370	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	29910417	29912080	-	downstream
28	LOC_Os05g07180	hypothetical protein	gene	hypothetical protein	chr5	3785489	3791566	-	downstream
28	LOC_Os03g15120	imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed	gene	imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed	chr3	8254371	8259749	-	downstream
28	LOC_Os01g49990	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	28723063	28723395	+	downstream
28	LOC_Os07g28870	hypothetical protein	gene	hypothetical protein	chr7	16908240	16909070	-	downstream
28	LOC_Os07g17600	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	10392011	10392313	+	downstream
28	LOC_Os11g09470	hypothetical protein	gene	hypothetical protein	chr11	5072148	5072703	-	downstream
28	LOC_Os11g25830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	14263528	14265118	-	downstream
28	LOC_Os07g01640	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	386960	390009	+	downstream
28	LOC_Os04g51870	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	30571617	30572648	-	downstream
28	LOC_Os02g30955	expressed protein	gene	expressed protein	chr2	18488513	18489274	-	downstream
28	LOC_Os09g13010	hypothetical protein	gene	hypothetical protein	chr9	7509531	7510835	+	downstream
28	LOC_Os04g59380	ZOS4-14 - C2H2 zinc finger protein, expressed	gene	ZOS4-14 - C2H2 zinc finger protein, expressed	chr4	35112479	35115230	+	downstream
28	LOC_Os12g20230	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	11796183	11797223	+	downstream
28	LOC_Os11g22840	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	12668667	12674171	-	downstream
28	LOC_Os12g18230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	10530429	10530632	+	downstream
28	LOC_Os02g19440	sirohydrochlorin ferrochelatase, putative, expressed	gene	sirohydrochlorin ferrochelatase, putative, expressed	chr2	11353277	11357736	-	downstream
28	LOC_Os06g17860	hypothetical protein	gene	hypothetical protein	chr6	10364751	10367451	-	downstream
28	LOC_Os05g27890	hypothetical protein	gene	hypothetical protein	chr5	16219414	16222545	-	downstream
28	LOC_Os12g21610	hypothetical protein	gene	hypothetical protein	chr12	12145116	12145490	+	downstream
28	LOC_Os10g37604	hypothetical protein	gene	hypothetical protein	chr10	20053018	20054130	-	downstream
28	LOC_Os09g18210	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	11158576	11161893	+	downstream
28	LOC_Os05g38870	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	22739950	22740261	-	downstream
28	LOC_Os10g29730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	15387663	15388337	-	downstream
28	LOC_Os04g52200	RNA recognition motif containing protein, putative, expressed	gene	RNA recognition motif containing protein, putative, expressed	chr4	30822177	30828795	-	downstream
28	LOC_Os05g17430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	10006545	10008737	-	downstream
28	LOC_Os06g32520	hypothetical protein	gene	hypothetical protein	chr6	18915542	18915904	-	downstream
28	LOC_Os01g36200	hypothetical protein	gene	hypothetical protein	chr1	20022114	20022395	-	downstream
28	LOC_Os12g03670	D-mannose binding lectin family protein	gene	D-mannose binding lectin family protein	chr12	1472687	1475197	-	downstream
28	LOC_Os07g03530	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	1408726	1412000	+	downstream
28	LOC_Os05g51270	hypothetical protein	gene	hypothetical protein	chr5	29349238	29350511	+	downstream
28	LOC_Os01g66050	wound-responsive family protein, putative, expressed	gene	wound-responsive family protein, putative, expressed	chr1	38328136	38331552	+	downstream
28	LOC_Os07g14320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8171835	8173913	+	downstream
28	LOC_Os07g23450	ZOS7-04 - C2H2 zinc finger protein	gene	ZOS7-04 - C2H2 zinc finger protein	chr7	13245587	13245898	+	downstream
28	LOC_Os04g25800	cytokinin-O-glucosyltransferase 2, putative, expressed	gene	cytokinin-O-glucosyltransferase 2, putative, expressed	chr4	14960538	14962198	+	downstream
28	LOC_Os06g23660	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	13810200	13811016	-	downstream
28	LOC_Os12g22360	hypothetical protein	gene	hypothetical protein	chr12	12617479	12618631	-	downstream
28	LOC_Os07g18489	unknown	gene	unknown	chr7	10940467	10942360	+	downstream
28	LOC_Os11g09880	hypothetical protein	gene	hypothetical protein	chr11	5285689	5286042	-	downstream
28	LOC_Os11g37420	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	21628460	21637016	-	downstream
28	LOC_Os02g15580	cyclic nucleotide-gated ion channel 1, putative, expressed	gene	cyclic nucleotide-gated ion channel 1, putative, expressed	chr2	8746950	8756040	-	downstream
28	LOC_Os07g41100	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	24600332	24601445	-	downstream
28	LOC_Os04g14820	hypothetical protein	gene	hypothetical protein	chr4	8317932	8318251	-	downstream
28	LOC_Os01g31950	hypothetical protein	gene	hypothetical protein	chr1	17493083	17493590	-	downstream
28	LOC_Os08g29410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	18029948	18031159	-	downstream
28	LOC_Os07g36260	transposon protein, putative, Pong sub-class, expressed	gene	transposon protein, putative, Pong sub-class, expressed	chr7	21673784	21677263	-	downstream
28	LOC_Os07g13220	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	7574437	7574802	-	downstream
28	LOC_Os05g23720	mitochondrial carrier protein, putative, expressed	gene	mitochondrial carrier protein, putative, expressed	chr5	13553095	13556987	-	downstream
28	LOC_Os01g62750	expressed protein	gene	expressed protein	chr1	36324640	36335518	-	downstream
28	LOC_Os04g27550	hypothetical protein	gene	hypothetical protein	chr4	16130981	16132155	-	downstream
28	LOC_Os04g24860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	14320104	14321595	+	downstream
28	LOC_Os06g31410	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	18280683	18282814	-	downstream
28	LOC_Os07g47930	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	28626429	28626971	-	downstream
28	LOC_Os12g01850	pentatricopeptide, putative, expressed	gene	pentatricopeptide, putative, expressed	chr12	495700	501261	-	downstream
28	LOC_Os06g17540	hypothetical protein	gene	hypothetical protein	chr6	10171850	10172653	+	downstream
28	LOC_Os11g19770	argininosuccinate synthase, chloroplast precursor, putative	gene	argininosuccinate synthase, chloroplast precursor, putative	chr11	11386128	11386915	+	downstream
28	LOC_Os08g36510	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	23056152	23057363	+	downstream
28	LOC_Os01g29060	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	16266479	16267290	+	downstream
28	LOC_Os05g14990	hypothetical protein	gene	hypothetical protein	chr5	8507112	8507318	+	downstream
28	LOC_Os01g61070	heavy metal-associated domain containing protein, expressed	gene	heavy metal-associated domain containing protein, expressed	chr1	35331662	35332461	+	downstream
28	LOC_Os05g16930	protein kinase domain containing protein, expressed	gene	protein kinase domain containing protein, expressed	chr5	9647920	9654838	+	downstream
28	LOC_Os04g11760	disease resistance protein, putative	gene	disease resistance protein, putative	chr4	6437427	6437747	+	downstream
28	LOC_Os08g28030	retrotransposon protein, putative, Ty1-copia subclass, expressed	gene	retrotransposon protein, putative, Ty1-copia subclass, expressed	chr8	17072117	17074494	-	downstream
28	LOC_Os01g18260	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr1	10247061	10250759	-	downstream
28	LOC_Os06g25940	hypothetical protein	gene	hypothetical protein	chr6	15180834	15181875	+	downstream
28	LOC_Os04g45050	hypothetical protein	gene	hypothetical protein	chr4	26470630	26471046	-	downstream
28	LOC_Os07g32230	domain of unknown function domain containing protein, expressed	gene	domain of unknown function domain containing protein, expressed	chr7	19160255	19164074	-	downstream
28	LOC_Os02g24638	unknown	gene	unknown	chr2	14282949	14283059	-	downstream
28	LOC_Os06g48700	DNA binding protein, putative, expressed	gene	DNA binding protein, putative, expressed	chr6	29461264	29466334	-	downstream
28	LOC_Os07g16670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	9782554	9784257	+	downstream
28	LOC_Os02g30780	LGC1, putative, expressed	gene	LGC1, putative, expressed	chr2	18329028	18329942	+	downstream
28	LOC_Os09g11480	AP2 domain containing protein, expressed	gene	AP2 domain containing protein, expressed	chr9	6403474	6405039	-	downstream
28	LOC_Os12g34124	mitochondrial ribosomal protein S3, putative	gene	mitochondrial ribosomal protein S3, putative	chr12	20642417	20645881	+	downstream
28	LOC_Os04g16160	hypothetical protein	gene	hypothetical protein	chr4	8774188	8775574	-	downstream
28	LOC_Os09g19870	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr9	11891671	11892888	+	downstream
28	LOC_Os09g25220	protein binding protein, putative	gene	protein binding protein, putative	chr9	15110085	15111567	+	downstream
28	LOC_Os05g17860	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10272155	10272529	-	downstream
28	LOC_Os01g32140	hypothetical protein	gene	hypothetical protein	chr1	17588132	17589148	+	downstream
28	LOC_Os09g02510	hypothetical protein	gene	hypothetical protein	chr9	1047804	1050501	-	downstream
28	LOC_Os02g45950	expressed protein	gene	expressed protein	chr2	27989249	27992781	+	downstream
28	LOC_Os08g36070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	22725318	22729015	-	downstream
28	LOC_Os06g24030	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	14035361	14035714	+	downstream
28	LOC_Os10g22380	glutamyl-tRNA synthetase, cytoplasmic, putative, expressed	gene	glutamyl-tRNA synthetase, cytoplasmic, putative, expressed	chr10	11510065	11514103	-	downstream
28	LOC_Os09g11450	transporter, monovalent cation:proton antiporter-2 family, putative, expressed	gene	transporter, monovalent cation:proton antiporter-2 family, putative, expressed	chr9	6372268	6382644	-	downstream
28	LOC_Os06g37109	unknown	gene	unknown	chr6	21916183	21916423	+	downstream
28	LOC_Os08g25149	unknown	gene	unknown	chr8	15276820	15277829	-	downstream
28	LOC_Os12g17890	hypothetical protein	gene	hypothetical protein	chr12	10255645	10256376	-	downstream
28	LOC_Os08g22020	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13292761	13297024	-	downstream
28	LOC_Os10g26180	hypothetical protein	gene	hypothetical protein	chr10	13491659	13492460	+	downstream
28	LOC_Os12g12830	latency associated nuclear antigen, putative	gene	latency associated nuclear antigen, putative	chr12	7076087	7076701	+	downstream
28	LOC_Os02g49020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	29969212	29969886	-	downstream
28	LOC_Os08g26740	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	16261213	16264781	+	downstream
28	LOC_Os12g21820	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr12	12279169	12284086	-	downstream
28	LOC_Os01g22740	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	12780668	12783895	+	downstream
28	LOC_Os08g01200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	140997	143225	-	downstream
28	LOC_Os09g22240	hypothetical protein	gene	hypothetical protein	chr9	13449950	13452360	-	downstream
28	LOC_Os06g43110	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	25907671	25908804	-	downstream
28	LOC_Os02g16820	glutelin, putative, expressed	gene	glutelin, putative, expressed	chr2	9580479	9582523	+	downstream
28	LOC_Os06g13620	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	7543707	7544168	+	downstream
28	LOC_Os07g40590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	24322393	24326015	+	downstream
28	LOC_Os11g15350	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	8684798	8688130	+	downstream
28	LOC_Os02g33690	hypothetical protein	gene	hypothetical protein	chr2	20084348	20084722	-	downstream
28	LOC_Os01g35580	expressed protein	gene	expressed protein	chr1	19680780	19685266	+	downstream
28	LOC_Os10g33820	expressed protein	gene	expressed protein	chr10	17867749	17869305	-	downstream
28	LOC_Os04g13350	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	7413732	7418741	-	downstream
28	LOC_Os08g20636	expressed protein	gene	expressed protein	chr8	12394042	12396311	-	downstream
28	LOC_Os04g16902	unknown	gene	unknown	chr4	9205451	9205522	+	downstream
28	LOC_Os07g11330	RAL2 - Seed allergenic protein RA5/RA14/RA17 precursor, expressed	gene	RAL2 - Seed allergenic protein RA5/RA14/RA17 precursor, expressed	chr7	6243131	6243881	-	downstream
28	LOC_Os10g32372	hypothetical protein	gene	hypothetical protein	chr10	16905840	16907225	-	downstream
28	LOC_Os05g27850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	16179990	16183084	+	downstream
28	LOC_Os04g28720	RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative	gene	RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative	chr4	16844809	16845075	+	downstream
28	LOC_Os02g01250	LSM domain containing protein, expressed	gene	LSM domain containing protein, expressed	chr2	135301	138097	-	downstream
28	LOC_Os06g38220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	22618319	22620632	+	downstream
28	LOC_Os03g04810	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	2284302	2287112	-	downstream
28	LOC_Os06g21250	glycine rich protein family protein, putative, expressed	gene	glycine rich protein family protein, putative, expressed	chr6	12286597	12287836	+	downstream
28	LOC_Os06g01304	spotted leaf 11, putative, expressed	gene	spotted leaf 11, putative, expressed	chr6	184692	190452	+	downstream
28	LOC_Os08g42800	hypothetical protein	gene	hypothetical protein	chr8	27069621	27070375	-	downstream
28	LOC_Os04g35780	expressed protein	gene	expressed protein	chr4	21627249	21629997	-	downstream
28	LOC_Os08g23500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	14222806	14223246	-	downstream
28	LOC_Os02g45110	MT-A70 domain containing protein, expressed	gene	MT-A70 domain containing protein, expressed	chr2	27354548	27359931	+	downstream
28	LOC_Os11g43860	sodium/calcium exchanger protein, putative, expressed	gene	sodium/calcium exchanger protein, putative, expressed	chr11	26016786	26020797	-	downstream
28	LOC_Os08g12580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7442968	7443705	-	downstream
28	LOC_Os04g02830	expressed protein	gene	expressed protein	chr4	1095771	1097846	-	downstream
28	LOC_Os12g11170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	6006536	6011253	-	downstream
28	LOC_Os04g15850	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	8596588	8600123	-	downstream
28	LOC_Os03g42140	hypothetical protein	gene	hypothetical protein	chr3	23451570	23452063	-	downstream
28	LOC_Os03g42910	hypothetical protein	gene	hypothetical protein	chr3	23935619	23936173	+	downstream
28	LOC_Os09g07709	unknown	gene	unknown	chr9	3890091	3890377	-	downstream
28	LOC_Os07g22784	unknown	gene	unknown	chr7	12859820	12859965	-	downstream
28	LOC_Os04g13580	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	7583059	7583499	-	downstream
28	LOC_Os03g51724	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	29639856	29641132	+	downstream
28	LOC_Os08g20370	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr8	12235809	12241969	+	downstream
28	LOC_Os12g20150	phosphoglucan, water dikinase, chloroplast precursor, putative, expressed	gene	phosphoglucan, water dikinase, chloroplast precursor, putative, expressed	chr12	11724731	11741867	-	downstream
28	LOC_Os11g03794	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr11	1490405	1495340	-	downstream
28	LOC_Os01g35120	zinc finger, C3HC4 type domain containing protein	gene	zinc finger, C3HC4 type domain containing protein	chr1	19436856	19437647	-	downstream
28	LOC_Os08g06810	hypothetical protein	gene	hypothetical protein	chr8	3799787	3802054	+	downstream
28	LOC_Os07g34620	expressed protein	gene	expressed protein	chr7	20751222	20753518	-	downstream
28	LOC_Os04g41650	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	24511515	24512378	+	downstream
28	LOC_Os10g14194	POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed	gene	POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed	chr10	7711704	7718097	-	downstream
28	LOC_Os09g17460	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10678410	10678901	-	downstream
28	LOC_Os05g37660	transferase family protein, putative, expressed	gene	transferase family protein, putative, expressed	chr5	21977496	21979405	-	downstream
28	LOC_Os03g45010	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	25407683	25408141	+	downstream
28	LOC_Os10g09430	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5100458	5104511	+	downstream
28	LOC_Os01g33730	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18559400	18561067	-	downstream
28	LOC_Os06g39320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	23327796	23329486	-	downstream
28	LOC_Os01g35370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	19567041	19568066	-	downstream
28	LOC_Os11g30830	conserved hypothetical protein	gene	conserved hypothetical protein	chr11	17486716	17487258	+	downstream
28	LOC_Os01g31629	expressed protein	gene	expressed protein	chr1	17308252	17324714	-	downstream
28	LOC_Os02g32710	hypothetical protein	gene	hypothetical protein	chr2	19425060	19426795	-	downstream
28	LOC_Os07g17230	disease resistance protein, putative, expressed	gene	disease resistance protein, putative, expressed	chr7	10154458	10158781	-	downstream
28	LOC_Os04g24400	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	13978245	13978754	-	downstream
28	LOC_Os08g30930	expressed protein	gene	expressed protein	chr8	19092012	19096227	+	downstream
28	LOC_Os06g32920	hypothetical protein	gene	hypothetical protein	chr6	19159475	19161686	+	downstream
28	LOC_Os09g21810	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	13215138	13220757	-	downstream
28	LOC_Os09g11020	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr9	6116013	6122691	-	downstream
28	LOC_Os01g74230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	42996390	43002498	-	downstream
28	LOC_Os01g59370	hypothetical protein	gene	hypothetical protein	chr1	34335250	34336328	-	downstream
28	LOC_Os01g25189	delta14-sterol reductase, putative, expressed	gene	delta14-sterol reductase, putative, expressed	chr1	14223870	14232630	-	downstream
28	LOC_Os12g12580	NADP-dependent oxidoreductase, putative, expressed	gene	NADP-dependent oxidoreductase, putative, expressed	chr12	6915075	6917493	+	downstream
28	LOC_Os01g34590	expressed protein	gene	expressed protein	chr1	19072002	19072845	-	downstream
28	LOC_Os07g42260	peptidase, T1 family, putative, expressed	gene	peptidase, T1 family, putative, expressed	chr7	25288262	25292799	-	downstream
28	LOC_Os05g51160	Myb transcription factor, putative, expressed	gene	Myb transcription factor, putative, expressed	chr5	29284551	29285986	-	downstream
28	LOC_Os04g26470	hypothetical protein	gene	hypothetical protein	chr4	15426176	15426579	-	downstream
28	LOC_Os04g09700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	5195727	5197703	+	downstream
28	LOC_Os03g62900	OsDegp4 - Putative Deg protease homologue	gene	OsDegp4 - Putative Deg protease homologue	chr3	35576371	35579810	-	downstream
28	LOC_Os10g07966	hypothetical protein	gene	hypothetical protein	chr10	4259739	4262145	+	downstream
28	LOC_Os12g16490	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	9436208	9441368	+	downstream
28	LOC_Os08g12780	chloroplast envelope membrane protein, putative, expressed	gene	chloroplast envelope membrane protein, putative, expressed	chr8	7567537	7573300	-	downstream
28	LOC_Os09g01140	hypothetical protein	gene	hypothetical protein	chr9	146529	151791	-	downstream
28	LOC_Os10g33484	hypothetical protein	gene	hypothetical protein	chr10	17565839	17567901	+	downstream
28	LOC_Os03g30700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	17486667	17489312	+	downstream
28	LOC_Os01g11780	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	6368419	6369066	+	downstream
28	LOC_Os05g25240	hypothetical protein	gene	hypothetical protein	chr5	14589526	14590541	+	downstream
28	LOC_Os05g34780	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr5	20573823	20580796	+	downstream
28	LOC_Os04g19320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10740679	10741437	+	downstream
28	LOC_Os08g15390	hypothetical protein	gene	hypothetical protein	chr8	9368321	9369115	-	downstream
28	LOC_Os02g54110	expressed protein	gene	expressed protein	chr2	33141034	33148238	+	downstream
28	LOC_Os05g20760	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12185249	12188439	+	downstream
28	LOC_Os05g16840	hypothetical protein	gene	hypothetical protein	chr5	9597940	9598377	+	downstream
28	LOC_Os06g17200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	9965307	9966599	-	downstream
28	LOC_Os08g35910	expressed protein	gene	expressed protein	chr8	22644653	22650168	-	downstream
28	LOC_Os02g50740	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	30980991	30982534	+	downstream
28	LOC_Os04g15770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8562965	8563600	+	downstream
28	LOC_Os08g12800	glucan endo-1,3-beta-glucosidase precursor, putative, expressed	gene	glucan endo-1,3-beta-glucosidase precursor, putative, expressed	chr8	7582451	7587424	+	downstream
28	LOC_Os06g48120	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	29114873	29116854	-	downstream
28	LOC_Os06g14560	hypothetical protein	gene	hypothetical protein	chr6	8198009	8199201	+	downstream
28	LOC_Os02g21990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr2	13076893	13077966	-	downstream
28	LOC_Os11g19390	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	11148989	11150446	+	downstream
28	LOC_Os12g23830	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	13545598	13550560	+	downstream
28	LOC_Os12g39890	expressed protein	gene	expressed protein	chr12	24616310	24619047	+	downstream
28	LOC_Os11g22120	hypothetical protein	gene	hypothetical protein	chr11	12229508	12230079	-	downstream
28	LOC_Os01g26920	expressed protein	gene	expressed protein	chr1	14992175	14997081	-	downstream
28	LOC_Os10g25110	pumilio-family RNA binding repeat containing protein, expressed	gene	pumilio-family RNA binding repeat containing protein, expressed	chr10	12869442	12875563	-	downstream
28	LOC_Os03g05890	hypothetical protein	gene	hypothetical protein	chr3	2954829	2955254	-	downstream
28	LOC_Os11g34570	lysM domain-containing GPI-anchored protein precursor, putative	gene	lysM domain-containing GPI-anchored protein precursor, putative	chr11	19773291	19774569	+	downstream
28	LOC_Os07g13500	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	7731847	7732263	-	downstream
28	LOC_Os12g39580	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	24387436	24390846	+	downstream
28	LOC_Os02g16909	dynein light chain type 1 domain containing protein, expressed	gene	dynein light chain type 1 domain containing protein, expressed	chr2	9641061	9642638	+	downstream
28	LOC_Os12g19350	expressed protein	gene	expressed protein	chr12	11215946	11230320	-	downstream
28	LOC_Os03g01400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	287792	288958	-	downstream
28	LOC_Os06g51530	ribosomal protein L29, putative	gene	ribosomal protein L29, putative	chr6	31222503	31225588	-	downstream
28	LOC_Os07g23530	hypothetical protein	gene	hypothetical protein	chr7	13292811	13293131	-	downstream
28	LOC_Os06g50770	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	30717415	30718931	-	downstream
28	LOC_Os06g10079	unknown	gene	unknown	chr6	5133769	5134334	-	downstream
28	LOC_Os08g19910	hypothetical protein	gene	hypothetical protein	chr8	11925927	11926736	-	downstream
28	LOC_Os02g07080	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	3640932	3644263	+	downstream
28	LOC_Os08g22006	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13200488	13205263	-	downstream
28	LOC_Os07g23660	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr7	13365423	13366549	+	downstream
28	LOC_Os01g14570	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	8162863	8166012	-	downstream
28	LOC_Os07g13740	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	7883437	7884447	-	downstream
28	LOC_Os06g42880	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	25762645	25763073	+	downstream
28	LOC_Os08g15960	hypothetical protein	gene	hypothetical protein	chr8	9709957	9710289	+	downstream
28	LOC_Os12g31810	cyclin, putative, expressed	gene	cyclin, putative, expressed	chr12	19109816	19114981	-	downstream
28	LOC_Os10g02380	oxidoreductase, aldo/keto reductase family protein, putative, expressed	gene	oxidoreductase, aldo/keto reductase family protein, putative, expressed	chr10	865365	869930	+	downstream
28	LOC_Os07g27410	hypothetical protein	gene	hypothetical protein	chr7	15969425	15969997	+	downstream
28	LOC_Os06g38062	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr6	22503686	22507345	-	downstream
28	LOC_Os07g08129	unknown	gene	unknown	chr7	4123826	4124350	+	downstream
28	LOC_Os03g53550	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	30704402	30706450	+	downstream
28	LOC_Os11g26170	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	14522132	14522608	-	downstream
28	LOC_Os01g19570	hypothetical protein	gene	hypothetical protein	chr1	11093711	11094106	-	downstream
28	LOC_Os02g25910	histone H3, putative, expressed	gene	histone H3, putative, expressed	chr2	15198238	15200906	-	downstream
28	LOC_Os10g09300	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	5044543	5046294	-	downstream
28	LOC_Os05g10880	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	6026612	6027239	-	downstream
28	LOC_Os04g12020	hypothetical protein	gene	hypothetical protein	chr4	6593727	6594864	-	downstream
28	LOC_Os04g01300	OsRhmbd10 - Putative Rhomboid homologue, expressed	gene	OsRhmbd10 - Putative Rhomboid homologue, expressed	chr4	225838	229061	-	downstream
28	LOC_Os05g20790	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	12203222	12203449	-	downstream
28	LOC_Os12g21550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	12113280	12114816	+	downstream
28	LOC_Os01g72380	expressed protein	gene	expressed protein	chr1	41981073	41984001	+	downstream
28	LOC_Os08g35550	hypothetical protein	gene	hypothetical protein	chr8	22395955	22396871	-	downstream
28	LOC_Os09g13700	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	8008496	8014633	-	downstream
28	LOC_Os10g19110	cytochrome P450, putative	gene	cytochrome P450, putative	chr10	9656831	9659015	+	downstream
28	LOC_Os03g47600	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	26931599	26938373	-	downstream
28	LOC_Os01g03190	expressed protein	gene	expressed protein	chr1	1253028	1254635	+	downstream
28	LOC_Os07g32360	hypothetical protein	gene	hypothetical protein	chr7	19236803	19237240	-	downstream
28	LOC_Os03g20610	hypothetical protein	gene	hypothetical protein	chr3	11668999	11669277	-	downstream
28	LOC_Os10g07290	glycosyl hydrolases family 17, putative, expressed	gene	glycosyl hydrolases family 17, putative, expressed	chr10	3848183	3850711	-	downstream
28	LOC_Os02g35760	STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed	gene	STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed	chr2	21468864	21471763	-	downstream
28	LOC_Os02g44990	OsFBDUF13 - F-box and DUF domain containing protein, expressed	gene	OsFBDUF13 - F-box and DUF domain containing protein, expressed	chr2	27242828	27245601	+	downstream
28	LOC_Os07g31790	CXE carboxylesterase, putative	gene	CXE carboxylesterase, putative	chr7	18892449	18893795	+	downstream
28	LOC_Os01g65610	expressed protein	gene	expressed protein	chr1	38087239	38093159	+	downstream
28	LOC_Os11g08800	hypothetical protein	gene	hypothetical protein	chr11	4666677	4668998	-	downstream
28	LOC_Os05g15240	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	8643817	8647442	+	downstream
28	LOC_Os10g40210	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	21454495	21456942	+	downstream
28	LOC_Os12g38500	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr12	23609356	23616658	+	downstream
28	LOC_Os11g47449	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	28144623	28145587	+	downstream
28	LOC_Os01g33220	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	18289288	18294797	+	downstream
28	LOC_Os12g12200	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	6695684	6699381	-	downstream
28	LOC_Os01g16530	OsClp1 - Putative Clp protease homologue, expressed	gene	OsClp1 - Putative Clp protease homologue, expressed	chr1	9377840	9382159	-	downstream
28	LOC_Os10g29920	snRNP protein, putative	gene	snRNP protein, putative	chr10	15468014	15469221	-	downstream
28	LOC_Os08g40410	translation factor EF-1 alpha, putative	gene	translation factor EF-1 alpha, putative	chr8	25572406	25574343	-	downstream
28	LOC_Os01g29100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	16284896	16287609	-	downstream
28	LOC_Os07g49440	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	29604804	29608409	-	downstream
28	LOC_Os01g16354	rab GDP dissociation inhibitor alpha, putative, expressed	gene	rab GDP dissociation inhibitor alpha, putative, expressed	chr1	9272876	9278032	-	downstream
28	LOC_Os06g25070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	14665932	14666573	+	downstream
28	LOC_Os11g11440	protein disulfide isomerase, putative	gene	protein disulfide isomerase, putative	chr11	6354813	6355654	-	downstream
28	LOC_Os04g07910	hypothetical protein	gene	hypothetical protein	chr4	4216446	4217335	-	downstream
28	LOC_Os11g38456	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	22311262	22314983	-	downstream
28	LOC_Os12g29690	NBS-LRR disease resistance protein, putative	gene	NBS-LRR disease resistance protein, putative	chr12	17701955	17706469	-	downstream
28	LOC_Os04g07690	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	4087581	4088093	-	downstream
28	LOC_Os08g22149	CBS domain containing membrane protein, putative, expressed	gene	CBS domain containing membrane protein, putative, expressed	chr8	13356498	13365130	+	downstream
28	LOC_Os04g11590	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6341995	6343697	-	downstream
28	LOC_Os03g41940	conserved hypothetical protein	gene	conserved hypothetical protein	chr3	23292374	23293086	-	downstream
28	LOC_Os08g26810	hypothetical protein	gene	hypothetical protein	chr8	16299852	16300154	+	downstream
28	LOC_Os11g47379	unknown	gene	unknown	chr11	27977665	27978360	+	downstream
28	LOC_Os07g37720	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	22609108	22614934	+	downstream
28	LOC_Os07g22600	spermidine synthase, putative, expressed	gene	spermidine synthase, putative, expressed	chr7	12715463	12721918	-	downstream
28	LOC_Os10g20910	40S ribosomal protein S23, putative	gene	40S ribosomal protein S23, putative	chr10	10519964	10520231	-	downstream
28	LOC_Os08g26320	hypothetical protein	gene	hypothetical protein	chr8	16047561	16048442	-	downstream
28	LOC_Os04g20320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11355269	11361377	+	downstream
28	LOC_Os08g13200	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	7844959	7845732	-	downstream
28	LOC_Os10g25950	cystathionine gamma-synthase, putative	gene	cystathionine gamma-synthase, putative	chr10	13377992	13379720	-	downstream
28	LOC_Os11g15540	hypothetical protein	gene	hypothetical protein	chr11	8799600	8802543	+	downstream
28	LOC_Os08g07240	hypothetical protein	gene	hypothetical protein	chr8	4036280	4038084	-	downstream
28	LOC_Os01g70610	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	40880739	40881056	+	downstream
28	LOC_Os06g02280	hypothetical protein	gene	hypothetical protein	chr6	753704	754111	+	downstream
28	LOC_Os04g14590	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	8181538	8184976	+	downstream
28	LOC_Os07g35090	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr7	21017783	21018412	+	downstream
28	LOC_Os12g01430	ribosomal protein L10, putative, expressed	gene	ribosomal protein L10, putative, expressed	chr12	266657	269166	-	downstream
28	LOC_Os06g47890	OsFBO9 - F-box and other domain containing protein, expressed	gene	OsFBO9 - F-box and other domain containing protein, expressed	chr6	28968490	28973578	-	downstream
28	LOC_Os07g32460	src homology-3 domain protein 3, putative, expressed	gene	src homology-3 domain protein 3, putative, expressed	chr7	19308974	19314485	-	downstream
28	LOC_Os01g64190	expressed protein	gene	expressed protein	chr1	37277948	37279448	-	downstream
28	LOC_Os02g29840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17738259	17739089	-	downstream
28	LOC_Os03g24070	rhythmically expressed gene 2 protein, putative, expressed	gene	rhythmically expressed gene 2 protein, putative, expressed	chr3	13665622	13668862	+	downstream
28	LOC_Os09g12800	zinc finger Ran-binding domain-containing protein 2, putative, expressed	gene	zinc finger Ran-binding domain-containing protein 2, putative, expressed	chr9	7346438	7353032	-	downstream
28	LOC_Os01g31870	natural resistance-associated macrophage protein, putative, expressed	gene	natural resistance-associated macrophage protein, putative, expressed	chr1	17452977	17464003	-	downstream
28	LOC_Os09g02230	hypothetical protein	gene	hypothetical protein	chr9	892123	893709	+	downstream
28	LOC_Os05g18820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10934391	10935052	-	downstream
28	LOC_Os11g18160	hypothetical protein	gene	hypothetical protein	chr11	10215885	10218140	-	downstream
28	LOC_Os02g27850	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr2	16481976	16487633	-	downstream
28	LOC_Os10g20180	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	10060598	10062597	+	downstream
28	LOC_Os03g03050	expressed protein	gene	expressed protein	chr3	1258343	1259526	-	downstream
28	LOC_Os06g24990	xylanase inhibitor protein 1 precursor, putative, expressed	gene	xylanase inhibitor protein 1 precursor, putative, expressed	chr6	14640577	14641576	-	downstream
28	LOC_Os04g37830	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	22303887	22305999	+	downstream
28	LOC_Os05g01002	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	25739	26206	-	downstream
28	LOC_Os06g15650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8864337	8865720	+	downstream
28	LOC_Os11g39710	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	23185294	23187180	+	downstream
28	LOC_Os12g09230	ligA, putative	gene	ligA, putative	chr12	4830887	4832803	-	downstream
28	LOC_Os10g01310	hypothetical protein	gene	hypothetical protein	chr10	193038	193382	-	downstream
28	LOC_Os01g31990	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr1	17516516	17516767	+	downstream
28	LOC_Os05g11000	hypothetical protein	gene	hypothetical protein	chr5	6153816	6154202	-	downstream
28	LOC_Os06g50420	plastocyanin-like domain containing protein, putative, expressed	gene	plastocyanin-like domain containing protein, putative, expressed	chr6	30526972	30528072	+	downstream
28	LOC_Os11g15670	NBS-LRR disease resistance protein, putative, expressed	gene	NBS-LRR disease resistance protein, putative, expressed	chr11	8877721	8880378	-	downstream
28	LOC_Os04g59280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	35065375	35068630	+	downstream
28	LOC_Os04g40250	hypothetical protein	gene	hypothetical protein	chr4	23754127	23756859	-	downstream
28	LOC_Os06g05450	hypothetical protein	gene	hypothetical protein	chr6	2460243	2461588	+	downstream
28	LOC_Os09g05050	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr9	2715010	2715649	+	downstream
28	LOC_Os05g15730	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	8886811	8889326	-	downstream
28	LOC_Os08g22550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	13577173	13578600	-	downstream
28	LOC_Os12g43900	retrotransposon protein, putative, LINE subclass	gene	retrotransposon protein, putative, LINE subclass	chr12	27219001	27223042	+	downstream
28	LOC_Os03g27630	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr3	15840546	15841734	-	downstream
28	LOC_Os03g41612	ribosomal protein L25, putative, expressed	gene	ribosomal protein L25, putative, expressed	chr3	23133961	23138718	-	downstream
28	LOC_Os09g04020	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	2061081	2063059	-	downstream
28	LOC_Os07g12700	hypothetical protein	gene	hypothetical protein	chr7	7255799	7256080	+	downstream
28	LOC_Os01g05010	mitochondrial glycoprotein, putative, expressed	gene	mitochondrial glycoprotein, putative, expressed	chr1	2356769	2359444	-	downstream
28	LOC_Os06g11100	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	5816259	5819852	+	downstream
28	LOC_Os01g01890	expressed protein	gene	expressed protein	chr1	482885	485492	+	downstream
28	LOC_Os11g17880	hypothetical protein	gene	hypothetical protein	chr11	10007111	10009383	+	downstream
28	LOC_Os10g24520	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	12514168	12516149	-	downstream
28	LOC_Os08g32470	hypothetical protein	gene	hypothetical protein	chr8	20102616	20103644	+	downstream
28	LOC_Os04g59160	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr4	35007075	35008660	-	downstream
28	LOC_Os06g08060	leucoanthocyanidin dioxygenase, putative, expressed	gene	leucoanthocyanidin dioxygenase, putative, expressed	chr6	3899489	3902057	+	downstream
28	LOC_Os09g03280	expressed protein	gene	expressed protein	chr9	1576121	1576927	+	downstream
28	LOC_Os12g07740	eukaryotic translation initiation factor 2 subunit gamma, putative, expressed	gene	eukaryotic translation initiation factor 2 subunit gamma, putative, expressed	chr12	3884386	3888692	-	downstream
28	LOC_Os04g07000	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3737101	3739185	+	downstream
28	LOC_Os01g13980	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	7831349	7832817	-	downstream
28	LOC_Os10g11680	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	6465982	6471667	-	downstream
28	LOC_Os11g17590	hypothetical protein	gene	hypothetical protein	chr11	9784773	9785360	+	downstream
28	LOC_Os09g14614	serine/arginine repetitive matrix protein 1, putative, expressed	gene	serine/arginine repetitive matrix protein 1, putative, expressed	chr9	8664791	8666872	-	downstream
28	LOC_Os04g45440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	26699178	26707937	+	downstream
28	LOC_Os05g28380	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr5	16568935	16570268	+	downstream
28	LOC_Os04g20010	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr4	11143549	11146263	+	downstream
28	LOC_Os04g48960	conserved hypothetical protein	gene	conserved hypothetical protein	chr4	29012881	29014771	+	downstream
28	LOC_Os07g09170	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	4781285	4784985	-	downstream
28	LOC_Os12g09470	hypothetical protein	gene	hypothetical protein	chr12	4967005	4967388	+	downstream
28	LOC_Os03g44974	hypothetical protein	gene	hypothetical protein	chr3	25388164	25388427	-	downstream
28	LOC_Os03g27470	hypothetical protein	gene	hypothetical protein	chr3	15756205	15757523	+	downstream
28	LOC_Os06g17020	anthocyanin 3-O-beta-glucosyltransferase, putative, expressed	gene	anthocyanin 3-O-beta-glucosyltransferase, putative, expressed	chr6	9869663	9871418	-	downstream
28	LOC_Os03g13250	peptide transporter PTR2, putative, expressed	gene	peptide transporter PTR2, putative, expressed	chr3	7146276	7150338	-	downstream
28	LOC_Os12g40600	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr12	25095558	25098312	-	downstream
28	LOC_Os01g15950	expressed protein	gene	expressed protein	chr1	8978005	8978280	-	downstream
28	LOC_Os08g19840	hypothetical protein	gene	hypothetical protein	chr8	11879363	11880129	+	downstream
28	LOC_Os01g40220	DEFL7 - Defensin and Defensin-like DEFL family	gene	DEFL7 - Defensin and Defensin-like DEFL family	chr1	22694236	22694621	+	downstream
28	LOC_Os04g41000	expressed protein	gene	expressed protein	chr4	24145654	24149690	-	downstream
28	LOC_Os04g05410	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	2704323	2707830	-	downstream
28	LOC_Os01g38310	hypothetical protein	gene	hypothetical protein	chr1	21486832	21487425	-	downstream
28	LOC_Os02g37680	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr2	22731641	22732785	-	downstream
28	LOC_Os01g06690	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	3156179	3157987	+	downstream
28	LOC_Os05g51190	protein kinase family protein, putative, expressed	gene	protein kinase family protein, putative, expressed	chr5	29297266	29302050	-	downstream
28	LOC_Os07g28540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	16697591	16700986	-	downstream
28	LOC_Os07g23140	hypothetical protein	gene	hypothetical protein	chr7	13048255	13048494	+	downstream
28	LOC_Os12g31380	initiation factor 2 subunit family domain containing protein, expressed	gene	initiation factor 2 subunit family domain containing protein, expressed	chr12	18850834	18853849	-	downstream
28	LOC_Os12g25665	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	14865490	14867728	-	downstream
28	LOC_Os11g29540	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr11	16676829	16678067	-	downstream
28	LOC_Os05g26510	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15351757	15352410	+	downstream
28	LOC_Os09g27710	pollen allergen Cyn d 23, putative	gene	pollen allergen Cyn d 23, putative	chr9	16866459	16867177	+	downstream
28	LOC_Os04g11550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	6321294	6322851	+	downstream
28	LOC_Os12g25370	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	14631795	14634026	-	downstream
28	LOC_Os09g12180	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr9	6884052	6886245	-	downstream
28	LOC_Os12g03490	hypothetical protein	gene	hypothetical protein	chr12	1377167	1377496	+	downstream
28	LOC_Os08g15560	hypothetical protein	gene	hypothetical protein	chr8	9459985	9460809	-	downstream
28	LOC_Os06g31290	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	18203807	18204133	+	downstream
28	LOC_Os09g21590	conserved hypothetical protein	gene	conserved hypothetical protein	chr9	13067714	13070076	-	downstream
28	LOC_Os01g37054	unknown	gene	unknown	chr1	20670742	20671380	-	downstream
28	LOC_Os02g24080	SNARE domain containing protein, putative, expressed	gene	SNARE domain containing protein, putative, expressed	chr2	13943553	13946014	-	downstream
28	LOC_Os10g13350	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	7222193	7227081	-	downstream
28	LOC_Os07g49480	KIP1, putative, expressed	gene	KIP1, putative, expressed	chr7	29632593	29637371	-	downstream
28	LOC_Os10g30250	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	15642024	15645258	+	downstream
28	LOC_Os02g18820	WD domain, G-beta repeat domain containing protein, expressed	gene	WD domain, G-beta repeat domain containing protein, expressed	chr2	10972700	10986656	-	downstream
28	LOC_Os04g27096	hypothetical protein	gene	hypothetical protein	chr4	15872671	15874053	-	downstream
28	LOC_Os04g06940	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	3658504	3659544	-	downstream
28	LOC_Os02g30020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr2	17830216	17833146	+	downstream
28	LOC_Os05g09716	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	5491345	5495267	+	downstream
28	LOC_Os04g27380	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	16005870	16006484	-	downstream
28	LOC_Os04g19400	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10799708	10801844	-	downstream
28	LOC_Os10g38680	conserved hypothetical protein	gene	conserved hypothetical protein	chr10	20540211	20541697	-	downstream
28	LOC_Os08g05040	hypothetical protein	gene	hypothetical protein	chr8	2583840	2584726	-	downstream
28	LOC_Os07g19560	TATA-binding protein-associated factor 2N, putative, expressed	gene	TATA-binding protein-associated factor 2N, putative, expressed	chr7	11591285	11595871	-	downstream
28	LOC_Os09g14670	phosphoenolpyruvate carboxylase, putative, expressed	gene	phosphoenolpyruvate carboxylase, putative, expressed	chr9	8691190	8696572	-	downstream
28	LOC_Os11g19540	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	11258241	11258543	+	downstream
28	LOC_Os07g17210	FAS1, putative, expressed	gene	FAS1, putative, expressed	chr7	10127342	10136480	-	downstream
28	LOC_Os07g27560	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16100229	16102450	+	downstream
28	LOC_Os07g24440	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	13912176	13918817	+	downstream
28	LOC_Os01g60470	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	34967893	34969665	+	downstream
28	LOC_Os04g21080	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11836256	11837452	-	downstream
28	LOC_Os05g17650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	10156758	10159440	-	downstream
28	LOC_Os06g47500	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	28761362	28761872	-	downstream
28	LOC_Os02g42070	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr2	25284747	25285178	-	downstream
28	LOC_Os01g23550	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	13223079	13225551	+	downstream
28	LOC_Os07g14290	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	8147475	8149863	-	downstream
28	LOC_Os08g19470	hypothetical protein	gene	hypothetical protein	chr8	11629395	11630405	+	downstream
28	LOC_Os02g37834	expressed protein	gene	expressed protein	chr2	22829928	22832976	+	downstream
28	LOC_Os02g07250	peptidase, cysteine peptidase active site, putative, expressed	gene	peptidase, cysteine peptidase active site, putative, expressed	chr2	3720871	3724567	-	downstream
28	LOC_Os04g20810	receptor protein kinase, putative, expressed	gene	receptor protein kinase, putative, expressed	chr4	11671679	11675856	-	downstream
28	LOC_Os11g30640	hypothetical protein	gene	hypothetical protein	chr11	17370738	17371214	-	downstream
28	LOC_Os02g07550	DEFL1 - Defensin and Defensin-like DEFL family, expressed	gene	DEFL1 - Defensin and Defensin-like DEFL family, expressed	chr2	3909434	3910011	+	downstream
28	LOC_Os07g25940	hypothetical protein	gene	hypothetical protein	chr7	14885519	14886070	+	downstream
28	LOC_Os07g31940	phosphoribosylanthranilate transferase, 3 partial, putative	gene	phosphoribosylanthranilate transferase, 3 partial, putative	chr7	19001090	19001335	+	downstream
28	LOC_Os07g20840	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	12052986	12054713	-	downstream
28	LOC_Os07g14780	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	8439539	8440018	+	downstream
28	LOC_Os08g35360	hypothetical protein	gene	hypothetical protein	chr8	22293503	22294107	+	downstream
28	LOC_Os03g31950	keratin, putative	gene	keratin, putative	chr3	18279225	18280411	+	downstream
28	LOC_Os07g11230	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	6179634	6182567	-	downstream
28	LOC_Os05g09030	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr5	5008984	5012219	+	downstream
28	LOC_Os12g31420	hypothetical protein	gene	hypothetical protein	chr12	18869607	18871005	-	downstream
28	LOC_Os08g17140	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	10490644	10493284	-	downstream
28	LOC_Os03g41260	hypothetical protein	gene	hypothetical protein	chr3	22942945	22943229	-	downstream
28	LOC_Os01g43000	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr1	24487854	24490348	-	downstream
28	LOC_Os12g42440	chaperone protein dnaJ, putative, expressed	gene	chaperone protein dnaJ, putative, expressed	chr12	26344262	26346243	+	downstream
28	LOC_Os09g17160	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10528066	10529378	-	downstream
28	LOC_Os05g17380	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	9969769	9970899	-	downstream
28	LOC_Os10g08070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	4388063	4388743	+	downstream
28	LOC_Os04g05950	hypothetical protein	gene	hypothetical protein	chr4	3077736	3079060	-	downstream
28	LOC_Os07g22129	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	12368207	12368686	+	downstream
28	LOC_Os10g17700	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	8874978	8875373	-	downstream
28	LOC_Os09g04790	PAP fibrillin family domain containing protein, expressed	gene	PAP fibrillin family domain containing protein, expressed	chr9	2547874	2551855	+	downstream
28	LOC_Os09g32968	emp24/gp25L/p24 family protein, putative, expressed	gene	emp24/gp25L/p24 family protein, putative, expressed	chr9	19677366	19681012	-	downstream
28	LOC_Os02g32615	expressed protein	gene	expressed protein	chr2	19326605	19327755	-	downstream
28	LOC_Os03g53820	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	30860223	30863478	-	downstream
28	LOC_Os08g10030	KH domain-containing protein, putative, expressed	gene	KH domain-containing protein, putative, expressed	chr8	5810118	5815031	-	downstream
28	LOC_Os09g28670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	17430825	17435611	-	downstream
28	LOC_Os08g26129	unknown	gene	unknown	chr8	15888494	15890159	+	downstream
28	LOC_Os07g45760	hypothetical protein	gene	hypothetical protein	chr7	27317043	27319874	+	downstream
28	LOC_Os04g40279	unknown	gene	unknown	chr4	23766545	23766930	+	downstream
28	LOC_Os01g48150	expressed protein	gene	expressed protein	chr1	27570160	27570901	+	downstream
28	LOC_Os03g33780	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr3	19308536	19310626	-	downstream
28	LOC_Os09g36460	zinc RING finger protein, putative, expressed	gene	zinc RING finger protein, putative, expressed	chr9	21037633	21041162	+	downstream
28	LOC_Os05g47450	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	27123715	27129770	+	downstream
28	LOC_Os11g19760	hypothetical protein	gene	hypothetical protein	chr11	11377509	11378166	+	downstream
28	LOC_Os06g14930	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	8471698	8472129	-	downstream
28	LOC_Os12g17610	hypothetical protein	gene	hypothetical protein	chr12	10082760	10083598	-	downstream
28	LOC_Os06g24930	transposon protein, putative, Ac/Ds sub-class, expressed	gene	transposon protein, putative, Ac/Ds sub-class, expressed	chr6	14615407	14616289	+	downstream
28	LOC_Os05g23580	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	13462056	13463711	-	downstream
28	LOC_Os05g23500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	13388061	13392100	+	downstream
28	LOC_Os04g29170	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	17121411	17122107	+	downstream
28	LOC_Os07g39970	ZOS7-08 - C2H2 zinc finger protein, expressed	gene	ZOS7-08 - C2H2 zinc finger protein, expressed	chr7	23979546	23980257	+	downstream
28	LOC_Os10g07626	hypothetical protein	gene	hypothetical protein	chr10	4253728	4254168	+	downstream
28	LOC_Os06g17730	plastocyanin-like domain containing protein, putative, expressed	gene	plastocyanin-like domain containing protein, putative, expressed	chr6	10286638	10287679	+	downstream
28	LOC_Os05g50170	ATPCME, putative, expressed	gene	ATPCME, putative, expressed	chr5	28682644	28689164	-	downstream
28	LOC_Os08g17070	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	10447359	10450805	+	downstream
28	LOC_Os08g35960	OsFBD14 - F-box and FBD domain containing protein, expressed	gene	OsFBD14 - F-box and FBD domain containing protein, expressed	chr8	22673057	22676599	-	downstream
28	LOC_Os06g22610	heat shock factor protein HSF8, putative	gene	heat shock factor protein HSF8, putative	chr6	13147278	13147890	+	downstream
28	LOC_Os05g07330	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	3896744	3900120	+	downstream
28	LOC_Os12g07200	conserved hypothetical protein	gene	conserved hypothetical protein	chr12	3537613	3538138	+	downstream
28	LOC_Os04g24240	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	13866722	13872036	+	downstream
28	LOC_Os06g05810	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr6	2645016	2645578	+	downstream
28	LOC_Os11g35470	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr11	20320981	20323499	-	downstream
28	LOC_Os08g21770	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr8	13033220	13037369	-	downstream
28	LOC_Os03g25430	transcription regulator, putative, expressed	gene	transcription regulator, putative, expressed	chr3	14536818	14538297	-	downstream
28	LOC_Os11g44200	hypothetical protein	gene	hypothetical protein	chr11	26225374	26226495	-	downstream
28	LOC_Os05g43990	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	25529326	25532871	+	downstream
28	LOC_Os03g22480	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr3	12884814	12890553	+	downstream
28	LOC_Os10g01340	expressed protein	gene	expressed protein	chr10	207873	208564	-	downstream
28	LOC_Os10g11320	expressed protein	gene	expressed protein	chr10	6298589	6299134	+	downstream
28	LOC_Os01g64540	anthocyanidin 3-O-glucosyltransferase, putative, expressed	gene	anthocyanidin 3-O-glucosyltransferase, putative, expressed	chr1	37450354	37451960	-	downstream
28	LOC_Os04g20240	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	11287459	11288686	-	downstream
28	LOC_Os10g08640	hypothetical protein	gene	hypothetical protein	chr10	4702197	4702999	+	downstream
28	LOC_Os01g70740	expressed protein	gene	expressed protein	chr1	40946028	40948550	-	downstream
28	LOC_Os08g31590	hypothetical protein	gene	hypothetical protein	chr8	19548295	19548585	+	downstream
28	LOC_Os01g04770	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr1	2180346	2181254	+	downstream
28	LOC_Os06g28020	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	15902547	15904690	+	downstream
28	LOC_Os04g18090	histone H1, putative, expressed	gene	histone H1, putative, expressed	chr4	9984198	9985211	+	downstream
28	LOC_Os01g28989	expressed protein	gene	expressed protein	chr1	16231094	16233443	+	downstream
28	LOC_Os04g30080	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	17779093	17779323	-	downstream
28	LOC_Os07g26770	circumsporozoite protein precursor, putative	gene	circumsporozoite protein precursor, putative	chr7	15460437	15460838	-	downstream
28	LOC_Os10g28990	MBTB42 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	gene	MBTB42 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain	chr10	15039195	15040355	+	downstream
28	LOC_Os12g28840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr12	17043737	17044306	-	downstream
28	LOC_Os09g31960	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	19055825	19059115	-	downstream
28	LOC_Os07g16500	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr7	9672270	9674837	+	downstream
28	LOC_Os06g31310	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	18219113	18225142	+	downstream
28	LOC_Os08g27100	conserved hypothetical protein	gene	conserved hypothetical protein	chr8	16556722	16557865	+	downstream
28	LOC_Os11g22250	hypothetical protein	gene	hypothetical protein	chr11	12304298	12305678	-	downstream
28	LOC_Os02g15900	50S ribosomal protein L21, chloroplast precursor, putative, expressed	gene	50S ribosomal protein L21, chloroplast precursor, putative, expressed	chr2	9005185	9007484	-	downstream
28	LOC_Os06g22150	hypothetical protein	gene	hypothetical protein	chr6	12859094	12859591	-	downstream
28	LOC_Os05g20914	expressed protein	gene	expressed protein	chr5	12293850	12298462	+	downstream
28	LOC_Os01g36930	ubiquitin carboxyl-terminal hydrolase 6, putative, expressed	gene	ubiquitin carboxyl-terminal hydrolase 6, putative, expressed	chr1	20580570	20588538	-	downstream
28	LOC_Os11g25110	tropinone reductase 2, putative	gene	tropinone reductase 2, putative	chr11	13844489	13845728	+	downstream
28	LOC_Os01g27400	hypothetical protein	gene	hypothetical protein	chr1	15295937	15298106	-	downstream
28	LOC_Os06g24300	hypothetical protein	gene	hypothetical protein	chr6	14211158	14212559	-	downstream
28	LOC_Os05g10800	expressed protein	gene	expressed protein	chr5	5964794	5966345	+	downstream
28	LOC_Os01g15410	conserved hypothetical protein	gene	conserved hypothetical protein	chr1	8635482	8636032	-	downstream
28	LOC_Os11g19740	hypothetical protein	gene	hypothetical protein	chr11	11373686	11373913	-	downstream
28	LOC_Os06g43370	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr6	26071381	26073149	+	downstream
28	LOC_Os06g18790	anthocyanidin 3-O-glucosyltransferase, putative	gene	anthocyanidin 3-O-glucosyltransferase, putative	chr6	10658719	10659690	+	downstream
28	LOC_Os02g28490	hypothetical protein	gene	hypothetical protein	chr2	16843093	16844485	+	downstream
28	LOC_Os12g36084	unknown	gene	unknown	chr12	22088476	22089137	-	downstream
28	LOC_Os09g25290	methyladenine glycosylase, putative, expressed	gene	methyladenine glycosylase, putative, expressed	chr9	15134213	15138450	-	downstream
28	LOC_Os11g40330	hypothetical protein	gene	hypothetical protein	chr11	23574632	23576482	-	downstream
28	LOC_Os10g09710	auxin-induced protein 5NG4, putative	gene	auxin-induced protein 5NG4, putative	chr10	5263969	5264450	+	downstream
28	LOC_Os07g28320	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr7	16533962	16534360	+	downstream
28	LOC_Os11g10350	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr11	5614941	5615759	-	downstream
28	LOC_Os06g39000	hypothetical protein	gene	hypothetical protein	chr6	23155212	23155634	+	downstream
28	LOC_Os12g34900	expressed protein	gene	expressed protein	chr12	21214115	21216773	+	downstream
28	LOC_Os08g44880	hypothetical protein	gene	hypothetical protein	chr8	28184689	28184961	-	downstream
28	LOC_Os10g12650	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	7069387	7069821	+	downstream
28	LOC_Os01g25640	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr1	14533126	14533449	+	downstream
28	LOC_Os03g14230	hypothetical protein	gene	hypothetical protein	chr3	7719568	7720656	-	downstream
28	LOC_Os03g16630	retrotransposon protein, putative, Ty1-copia subclass	gene	retrotransposon protein, putative, Ty1-copia subclass	chr3	9179879	9180697	-	downstream
28	LOC_Os09g26710	major ampullate spidroin 2, putative	gene	major ampullate spidroin 2, putative	chr9	16228908	16230064	-	downstream
28	LOC_Os09g11500	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr9	6412996	6422117	-	downstream
28	LOC_Os03g23140	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	13374633	13376884	-	downstream
28	LOC_Os06g29030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr6	16543766	16547533	+	downstream
28	LOC_Os03g19950	hypothetical protein	gene	hypothetical protein	chr3	11223236	11223715	-	downstream
28	LOC_Os12g23310	hypothetical protein	gene	hypothetical protein	chr12	13197116	13197525	+	downstream
28	LOC_Os10g03120	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1317037	1319497	+	downstream
28	LOC_Os08g44490	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	27976823	27980115	+	downstream
28	LOC_Os07g13060	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	7486165	7489491	+	downstream
28	LOC_Os07g23320	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr7	13142304	13142630	-	downstream
28	LOC_Os08g15190	expressed protein	gene	expressed protein	chr8	9182813	9184691	+	downstream
28	LOC_Os10g06820	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr10	3556978	3557892	+	downstream
28	LOC_Os08g27550	hypothetical protein	gene	hypothetical protein	chr8	16798931	16799286	+	downstream
28	LOC_Os04g16970	zinc finger, C3HC4 type domain containing protein, expressed	gene	zinc finger, C3HC4 type domain containing protein, expressed	chr4	9286486	9287272	-	downstream
28	LOC_Os07g15140	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	8688723	8691955	-	downstream
28	LOC_Os12g25494	transposon protein, putative, unclassified, expressed	gene	transposon protein, putative, unclassified, expressed	chr12	14751646	14755330	-	downstream
28	LOC_Os08g29790	hypothetical protein	gene	hypothetical protein	chr8	18310641	18311341	-	downstream
28	LOC_Os05g12170	plant-specific domain TIGR01589 family protein, putative, expressed	gene	plant-specific domain TIGR01589 family protein, putative, expressed	chr5	6957321	6964134	-	downstream
28	LOC_Os07g23910	hypothetical protein	gene	hypothetical protein	chr7	13516003	13516215	-	downstream
28	LOC_Os05g04450	peroxidase precursor, putative, expressed	gene	peroxidase precursor, putative, expressed	chr5	2050476	2052090	+	downstream
28	LOC_Os03g12470	OsWAK25 - OsWAK receptor-like protein kinase, expressed	gene	OsWAK25 - OsWAK receptor-like protein kinase, expressed	chr3	6588671	6593037	+	downstream
28	LOC_Os05g51760	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr5	29633535	29636699	-	downstream
28	LOC_Os10g09450	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr10	5113000	5113440	+	downstream
28	LOC_Os04g19700	zinc finger family protein, putative	gene	zinc finger family protein, putative	chr4	10987602	10987910	-	downstream
28	LOC_Os03g01670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	412342	415017	+	downstream
28	LOC_Os05g27480	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	15922560	15923177	+	downstream
28	LOC_Os08g05380	hypothetical protein	gene	hypothetical protein	chr8	2837130	2837737	+	downstream
28	LOC_Os04g48900	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr4	28982982	28985681	+	downstream
28	LOC_Os04g18280	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	10090392	10093113	-	downstream
28	LOC_Os07g26070	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr7	14959206	14962407	-	downstream
28	LOC_Os06g47410	hypothetical protein	gene	hypothetical protein	chr6	28724243	28725531	-	downstream
28	LOC_Os02g15370	hypothetical protein	gene	hypothetical protein	chr2	8602053	8602313	+	downstream
28	LOC_Os06g03270	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	1246146	1246769	-	downstream
28	LOC_Os04g12390	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6829355	6837812	-	downstream
28	LOC_Os05g27360	conserved hypothetical protein	gene	conserved hypothetical protein	chr5	15851278	15851763	+	downstream
28	LOC_Os03g36890	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr3	20465056	20468456	-	downstream
28	LOC_Os03g36490	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	gene	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	chr3	20208478	20210330	-	downstream
28	LOC_Os12g30030	IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed	gene	IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed	chr12	17936172	17939184	-	downstream
28	LOC_Os04g16898	unknown	gene	unknown	chr4	9205254	9205454	+	downstream
28	LOC_Os02g28680	expressed protein	gene	expressed protein	chr2	16960601	16962469	+	downstream
28	LOC_Os03g33590	interferon-related developmental regulator, putative, expressed	gene	interferon-related developmental regulator, putative, expressed	chr3	19196361	19202850	-	downstream
28	LOC_Os11g03920	expressed protein	gene	expressed protein	chr11	1564339	1565354	-	downstream
28	LOC_Os05g08580	hypothetical protein	gene	hypothetical protein	chr5	4699285	4700409	+	downstream
28	LOC_Os02g33180	rar1, putative, expressed	gene	rar1, putative, expressed	chr2	19721250	19724020	-	downstream
28	LOC_Os04g25499	hypothetical protein	gene	hypothetical protein	chr4	14782691	14782993	-	downstream
28	LOC_Os04g43180	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr4	25373871	25374308	-	downstream
28	LOC_Os04g05840	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr4	2994662	2999230	-	downstream
28	LOC_Os04g33115	hypothetical protein	gene	hypothetical protein	chr4	19875543	19876127	+	downstream
28	LOC_Os07g25830	conserved hypothetical protein	gene	conserved hypothetical protein	chr7	14829340	14830320	+	downstream
28	LOC_Os05g23389	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr5	13306043	13306244	-	downstream
28	LOC_Os05g33440	mTERF domain containing protein, expressed	gene	mTERF domain containing protein, expressed	chr5	19587192	19588588	-	downstream
28	LOC_Os01g16670	BSD domain-containing protein, putative, expressed	gene	BSD domain-containing protein, putative, expressed	chr1	9453952	9455899	+	downstream
28	LOC_Os12g01620	expressed protein	gene	expressed protein	chr12	373598	378382	-	downstream
28	LOC_Os11g26400	retrotransposon, putative, centromere-specific	gene	retrotransposon, putative, centromere-specific	chr11	14657890	14658993	-	downstream
28	LOC_Os12g04800	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	2045502	2047557	-	downstream
28	LOC_Os07g22950	adenylate kinase isoenzyme 6, putative, expressed	gene	adenylate kinase isoenzyme 6, putative, expressed	chr7	12925455	12929718	+	downstream
28	LOC_Os04g29030	dehydrogenase, putative, expressed	gene	dehydrogenase, putative, expressed	chr4	17029265	17031527	+	downstream
28	LOC_Os06g28410	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr6	16161417	16163522	+	downstream
28	LOC_Os04g15880	hypothetical protein	gene	hypothetical protein	chr4	8609706	8613369	-	downstream
28	LOC_Os08g29980	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr8	18412056	18417096	-	downstream
28	LOC_Os12g19180	ATP binding protein, putative, expressed	gene	ATP binding protein, putative, expressed	chr12	11135285	11138969	+	downstream
28	LOC_Os07g13834	expressed protein	gene	expressed protein	chr7	7922181	7922754	+	downstream
28	LOC_Os08g43020	transferase family protein, putative	gene	transferase family protein, putative	chr8	27193768	27194726	+	downstream
28	LOC_Os10g02850	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr10	1144356	1147392	+	downstream
28	LOC_Os07g15500	expressed protein	gene	expressed protein	chr7	8993047	8996220	-	downstream
28	LOC_Os08g07460	transposon protein, putative, unclassified	gene	transposon protein, putative, unclassified	chr8	4183127	4186054	-	downstream
28	LOC_Os06g29100	hypothetical protein	gene	hypothetical protein	chr6	16587695	16589111	-	downstream
28	LOC_Os12g14020	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr12	7963028	7963801	-	downstream
28	LOC_Os04g06300	expressed protein	gene	expressed protein	chr4	3291502	3295869	-	downstream
28	LOC_Os05g22300	transferase family protein, putative	gene	transferase family protein, putative	chr5	12564386	12565886	+	downstream
28	LOC_Os08g39750	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr8	25166044	25168094	+	downstream
28	LOC_Os09g27880	hypothetical protein	gene	hypothetical protein	chr9	16952726	16953814	+	downstream
28	LOC_Os02g38730	hypothetical protein	gene	hypothetical protein	chr2	23402441	23403366	+	downstream
28	LOC_Os08g12280	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr8	7225554	7229230	-	downstream
28	LOC_Os01g26320	ZmEBE-1 protein, putative, expressed	gene	ZmEBE-1 protein, putative, expressed	chr1	14923897	14926989	+	downstream
28	LOC_Os07g48880	importin subunit alpha-1b, putative, expressed	gene	importin subunit alpha-1b, putative, expressed	chr7	29246392	29250978	-	downstream
28	LOC_Os06g11900	conserved hypothetical protein	gene	conserved hypothetical protein	chr6	6332935	6333979	-	downstream
28	LOC_Os04g08828	cytochrome P450, putative, expressed	gene	cytochrome P450, putative, expressed	chr4	4869813	4873784	+	downstream
28	LOC_Os04g08700	hypothetical protein	gene	hypothetical protein	chr4	4718445	4719283	-	downstream
28	LOC_Os04g11580	transposon protein, putative, CACTA, En/Spm sub-class	gene	transposon protein, putative, CACTA, En/Spm sub-class	chr4	6340508	6341406	-	downstream
28	LOC_Os05g14670	retrotransposon protein, putative, unclassified	gene	retrotransposon protein, putative, unclassified	chr5	8340439	8342063	-	downstream
28	LOC_Os11g24220	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr11	13326079	13328532	+	downstream
28	LOC_Os09g17030	retrotransposon protein, putative, Ty3-gypsy subclass	gene	retrotransposon protein, putative, Ty3-gypsy subclass	chr9	10435661	10441366	-	downstream
28	LOC_Os03g30030	retrotransposon protein, putative, unclassified, expressed	gene	retrotransposon protein, putative, unclassified, expressed	chr3	17133040	17134701	-	downstream