agriGO - single species analysis

Spirodela polyrhiza Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

SEA is a traditional and widely used method. User only needs to prepare a list of gene/probe names, and enrichment GO terms will be found out after statistical test from pre_calculated background or customized one.

2. Input a gene list:


<allowed ID types in Spirodela_polyrhiza>
locus ID v2 (Phytozome v11.0)  (eg.Spipo23G0013000)
New_Sp9509v3 protein ID(Spirodela Genome.org and compute)  (eg.Sp01G15410)
Sp7498v3 protein ID(Spirodela Genome.org and compute)  (eg.Sp18G00130)
Sp7498v2 protein ID(Spirodela Genome.org and compute)  (eg.Spipo2G0003600)
Sp7498v0.7 protein ID(Spirodela Genome.org and compute)  (eg.Spipo0017S06720.1)

3. Select reference:

Suggested backgrounds

Customized reference [ Example ]

For each species, suggested backgrounds are provided. These backgrounds are all pre_computated, and are available to download. To those species without a relatively completed GO profile, backgrounds from near organisms are used as suggestion. If you don't like these backgrounds, then you may submit your customized with/without GO annotation.

Spirodela polyrhiza Singular Enrichment Analysis (SEA)

1. Select analysis tool:

Singular Enrichment Analysis (SEA)

Parametric Analysis of Gene Set Enrichment (PAGE)

searching for genes or GO terms

2. Input a gene list:

3. Select reference:

4. Advanced options (optional):